BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032632
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UHR|A Chain A, Solution Structure Of The Swib Domain Of Mouse Brg1-
Associated Factor 60a
Length = 93
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 64 VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFL 123
+ P LA+ LG +R ++ +W ++KTH LQ+P + +LCD+ L+ IFE + + F
Sbjct: 14 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQR-MKFS 72
Query: 124 EIGKLL 129
EI + L
Sbjct: 73 EIPQRL 78
>pdb|1V31|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE
Hypothetical Protein At5g14170 From Arabidopsis Thaliana
Length = 93
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 56 TGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFE 115
+G+ + +S AL LG +R + IW +VK LQNP + CD L+ +F
Sbjct: 6 SGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF- 64
Query: 116 GKNAVGFLEIGKLLSPHF 133
G+ + F + + +S H
Sbjct: 65 GEEKLKFTMVSQKISHHL 82
>pdb|1V32|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE
Hypothetical Protein At5g08430 From Arabidopsis Thaliana
Length = 101
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 78 SRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133
SR D I ++ L +P NK++++CD++L +F G + +++ LL H+
Sbjct: 36 SRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLF-GTRTIFRMKVYDLLEKHY 90
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 91 KTHNLQNPENKREILCDEKLKAIFEGKNAVG--FLEIGKLL 129
+ HN NPE K+ +E+ + IFE +G + EI KLL
Sbjct: 48 RWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLL 88
>pdb|3R66|A Chain A, Crystal Structure Of Human Isg15 In Complex With Ns1
N-Terminal Region From Influenza Virus B, Northeast
Structural Genomics Consortium Target Ids Hx6481,
Hr2873, And Or2
pdb|3R66|B Chain B, Crystal Structure Of Human Isg15 In Complex With Ns1
N-Terminal Region From Influenza Virus B, Northeast
Structural Genomics Consortium Target Ids Hx6481,
Hr2873, And Or2
pdb|3SDL|A Chain A, Crystal Structure Of Human Isg15 In Complex With Ns1
N-Terminal Region From Influenza B Virus, Northeast
Structural Genomics Consortium Target Ids Hx6481,
Hr2873, And Or2
pdb|3SDL|B Chain B, Crystal Structure Of Human Isg15 In Complex With Ns1
N-Terminal Region From Influenza B Virus, Northeast
Structural Genomics Consortium Target Ids Hx6481,
Hr2873, And Or2
Length = 113
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 84 RQIWAHVKTHNLQNPENKREILCDEKLKAI 113
R++ + +KTHN PENKR L E+ KAI
Sbjct: 63 RKLESRIKTHNKSEPENKRMSL--EERKAI 90
>pdb|1XEQ|A Chain A, Crystal Tructure Of Rna Binding Domain Of Influenza B
Virus Non- Structural Protein
pdb|1XEQ|B Chain B, Crystal Tructure Of Rna Binding Domain Of Influenza B
Virus Non- Structural Protein
Length = 103
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 84 RQIWAHVKTHNLQNPENKREILCDEKLKAI 113
R++ + +KTHN PENKR L E+ KAI
Sbjct: 53 RKLESRIKTHNKSEPENKRMSL--EERKAI 80
>pdb|3RT3|C Chain C, Complex Of Influenza Virus Protein With Host Anti-Viral
Factor
Length = 109
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 84 RQIWAHVKTHNLQNPENKREILCDEKLKAI 113
R++ + +KTHN PENKR L E+ KAI
Sbjct: 53 RKLESRIKTHNKSEPENKRMSL--EERKAI 80
>pdb|2NP2|A Chain A, Hbb-Dna Complex
pdb|2NP2|B Chain B, Hbb-Dna Complex
Length = 108
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 71 FLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD---EKLKAIFEGKNAVGFLEIG 126
F P+ ++SD V QI ++K +NL+ + ++ D E+LK+ N + F G
Sbjct: 3 FSRRPKVTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFG 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,975,813
Number of Sequences: 62578
Number of extensions: 93933
Number of successful extensions: 165
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 8
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)