BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032632
(137 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08747|UAF30_YEAST Upstream activation factor subunit UAF30 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1
SV=1
Length = 228
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 61/89 (68%), Gaps = 4/89 (4%)
Query: 48 KRGAPTR-PTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILC 106
K+G ++ P KV+ +S +LA LG E +R++ VR++WA++K HNLQNP NK+EILC
Sbjct: 110 KKGTVSKSPISTRKVT-LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILC 168
Query: 107 DEKLKAIFEGKNAVGFLEIGKLLSPHFVK 135
DEKL+ I GK+ F E+ K+L+ H +
Sbjct: 169 DEKLELIL-GKSTNMF-EMHKILASHMTE 195
>sp|Q05024|TRI1_YEAST Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TRI1 PE=1 SV=1
Length = 226
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 64 VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFL 123
+S L KFLG+ E R+ V+ IW ++K H+LQNP+++REILCDEK++ IF GK F
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF-GKKMTMF- 183
Query: 124 EIGKLLSPHF 133
+ KLL+ H
Sbjct: 184 SMNKLLTKHL 193
>sp|O74503|UAF30_SCHPO Upstream activation factor subunit spp27 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1
Length = 233
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 63/121 (52%), Gaps = 13/121 (10%)
Query: 10 NGCRALLAPAKSSAAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGISKVSPVSPALA 69
NG PAK + K K + P A +P ++K +SP LA
Sbjct: 81 NGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDP-ANNP-----------LNKPMKLSPKLA 128
Query: 70 KFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLL 129
+FLG + SR V+++W ++K H+LQ+P +KR ILCD+KLK++FE + + + K L
Sbjct: 129 EFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFEV-DTLHMFTMNKYL 187
Query: 130 S 130
+
Sbjct: 188 T 188
>sp|Q9P7S3|SSR3_SCHPO SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr3 PE=1 SV=1
Length = 425
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 64 VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEG 116
+S A A LG E +R D V +W ++K H LQ+ E KR I CD+ L+ +FE
Sbjct: 208 LSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEA 260
>sp|Q91FL8|VF306_IIV6 Putative SWIB domain-containing protein 306R OS=Invertebrate
iridescent virus 6 GN=IIV6-306R PE=3 SV=1
Length = 312
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 47 VKRGAPTRPTGISKVSPVSPALAKFLG---APEASRSDAVRQIWAHVKTHNLQNPENKRE 103
VK + TG+ K+ ++ LAKFLG + SR+D + I HV+ LQN ENK+
Sbjct: 131 VKHTRTSANTGLGKLRVITNDLAKFLGCDPSEMKSRNDVTKAICKHVEEKKLQNQENKKI 190
Query: 104 ILCDEKL 110
I+CD L
Sbjct: 191 IMCDTML 197
>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Mus musculus
GN=Smarcd1 PE=1 SV=3
Length = 515
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 64 VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFL 123
+ P LA+ LG +R ++ +W ++KTH LQ+P + +LCD+ L+ IFE + + F
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQR-MKFS 355
Query: 124 EIGKLL 129
EI + L
Sbjct: 356 EIPQRL 361
>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Homo sapiens
GN=SMARCD1 PE=1 SV=2
Length = 515
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 64 VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFL 123
+ P LA+ LG +R ++ +W ++KTH LQ+P + ++CD+ L+ IFE + + F
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQR-MKFS 355
Query: 124 EIGKLL 129
EI + L
Sbjct: 356 EIPQRL 361
>sp|Q2TBN1|SMRD1_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1
PE=2 SV=1
Length = 515
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 64 VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFL 123
+ P LA+ LG +R ++ +W ++KTH LQ+P + ++CD+ L+ IFE + + F
Sbjct: 297 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQR-MKFS 355
Query: 124 EIGKLL 129
EI + L
Sbjct: 356 EIPQRL 361
>sp|Q9SIV5|C3H19_ARATH Zinc finger CCCH domain-containing protein 19 OS=Arabidopsis
thaliana GN=NERD PE=1 SV=3
Length = 1773
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 88 AHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVK 135
A++K +NL++P K +++CD +L+ +F GK+ VG E+ LL HF+K
Sbjct: 838 AYIKRYNLRDPRRKSQVICDSRLQNLF-GKSHVGHFEMLNLLDSHFLK 884
>sp|Q196Z0|VF306_IIV3 Putative SWIB domain-containing protein 070L OS=Invertebrate
iridescent virus 3 GN=IIV3-070L PE=3 SV=1
Length = 282
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 48 KRGAPTRPTGISKVSPVSPALAKF----LGAPEASRSDAVRQIWAHVKTHNLQNPENKRE 103
KR + TG+ K +S A+A F G E SR D + + A++K ++L++ NK
Sbjct: 88 KRTRESHNTGLEKPRMISEAMATFADWEYGKTEKSRYDVTKYLCAYIKDNDLRDASNKTI 147
Query: 104 ILCDEKLKAIFEGKNAV 120
IL D KLK + + ++V
Sbjct: 148 ILPDAKLKKLLQVDDSV 164
>sp|Q9SD34|C3H44_ARATH Zinc finger CCCH domain-containing protein 44 OS=Arabidopsis
thaliana GN=At3g51120 PE=2 SV=3
Length = 1292
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 78 SRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFV 134
S+ D + ++K NL++P K ++LCD+ L +F GK VG E+ KLL H +
Sbjct: 340 SQFDVQGLLLDYIKKKNLRDPLQKSQVLCDQMLVKLF-GKQRVGHFEMLKLLESHVL 395
>sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana
GN=At5g14170 PE=1 SV=1
Length = 534
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 64 VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFL 123
+S AL LG +R + IW +VK LQNP + CD L+ +F G+ + F
Sbjct: 321 LSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVF-GEEKLKFT 379
Query: 124 EIGKLLSPHF 133
+ + +S H
Sbjct: 380 MVSQKISHHL 389
>sp|Q6P9Z1|SMRD3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 OS=Mus musculus
GN=Smarcd3 PE=1 SV=2
Length = 483
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 64 VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFE 115
+ P LA+ LG SRS V+ +W +VKT+ LQ+ +K I D+ + IF+
Sbjct: 265 LDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFD 316
>sp|Q6STE5|SMRD3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 3 OS=Homo sapiens
GN=SMARCD3 PE=1 SV=1
Length = 483
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 64 VSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFE 115
+ P LA+ LG SRS V+ +W +VKT+ LQ+ +K I D+ + IF+
Sbjct: 265 LDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFD 316
>sp|Q9FT92|Y5843_ARATH Uncharacterized protein At5g08430 OS=Arabidopsis thaliana
GN=At5g08430 PE=1 SV=2
Length = 553
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 43 AKSPVKRGAPTRPTGISKVSPVSPALAKFL------GAPEASRSDAVRQIWAHVKTHNLQ 96
A S KR A RP V S L +FL + SR D I ++ L
Sbjct: 14 ATSSRKRKA--RPKRFEFVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLL 71
Query: 97 NPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133
+P NK++++CD++L +F G + +++ LL H+
Sbjct: 72 DPSNKKKVVCDKRLVLLF-GTRTIFRMKVYDLLEKHY 107
>sp|Q556Z0|SNF12_DICDI SWI/SNF complex component SNF12 homolog OS=Dictyostelium discoideum
GN=snf12-1 PE=3 SV=1
Length = 456
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 67 ALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIG 126
L++ L ++ + +W ++K++ L + E K+ I CDE LK IF + + F +I
Sbjct: 244 GLSQLLNIHTDTKPRIILALWHYIKSNTLLDAETKK-ITCDENLKNIFSLEE-LQFNQIP 301
Query: 127 KLLSPHF 133
+LL H
Sbjct: 302 QLLREHL 308
>sp|Q5R4B2|ARMX1_PONAB Armadillo repeat-containing X-linked protein 1 OS=Pongo abelii
GN=ARMCX1 PE=2 SV=1
Length = 453
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 12 CRALLAPAKSSAAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGISKVSPVSPALAKF 71
C + +++ AS + KA+SK+T+ P PV+RG P I + +P L K
Sbjct: 152 CHPTRSGSRAGGRASGKSKGKARSKSTRAPATTWPVRRGKFNFPYKIDDILS-APDLQKV 210
Query: 72 LGAPEASRSDAVRQI 86
L E + ++++
Sbjct: 211 LNILERTNDPFIQEV 225
>sp|Q9P291|ARMX1_HUMAN Armadillo repeat-containing X-linked protein 1 OS=Homo sapiens
GN=ARMCX1 PE=1 SV=1
Length = 453
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 12 CRALLAPAKSSAAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGISKVSPVSPALAKF 71
C + +++ AS + KA+SK+T+ P PV+RG P I + +P L K
Sbjct: 152 CHPTRSGSRAGGRASGKSKGKARSKSTRAPATTWPVRRGKFNFPYKIDDILS-APDLQKV 210
Query: 72 LGAPEASRSDAVRQI 86
L E + ++++
Sbjct: 211 LNILERTNDPFIQEV 225
>sp|Q9HCE9|ANO8_HUMAN Anoctamin-8 OS=Homo sapiens GN=ANO8 PE=2 SV=3
Length = 1232
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 23 AAASSAASTKAKSKTTKKPRAKSPVKRGAPTRPTGISKVSPVSPALAKFLGAPEAS 78
A +S AS KAK T + P + G+ P + K+ + P KFL + S
Sbjct: 940 ATSSEKASAKAKGSTAGGHGPERPKRPGSLLAPNNVMKLKQIIPLQGKFLSSGATS 995
>sp|Q5EAW4|MCM10_XENLA Protein MCM10 homolog OS=Xenopus laevis GN=mcm10 PE=1 SV=2
Length = 860
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 41 PRAKSPVKRGAPTRPTGISKVSPVSPALAKFLGAPEAS 78
P+AK P AP R +S SPV +A FL PE S
Sbjct: 177 PKAKLP---DAPKRKQNLSDKSPVQKKMASFLSPPEKS 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.124 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,666,549
Number of Sequences: 539616
Number of extensions: 1693610
Number of successful extensions: 8392
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 168
Number of HSP's that attempted gapping in prelim test: 7637
Number of HSP's gapped (non-prelim): 788
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)