Query 032632
Match_columns 137
No_of_seqs 150 out of 585
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v31_A Hypothetical protein RA 100.0 3.3E-31 1.1E-35 187.8 5.8 81 55-136 5-85 (93)
2 1uhr_A SWI/SNF related, matrix 100.0 1.5E-30 5.1E-35 184.6 3.3 79 56-135 6-84 (93)
3 1v32_A AT5G08430, hypothetical 100.0 2.2E-29 7.4E-34 181.6 8.3 76 60-136 12-93 (101)
4 3dac_M MDM4 protein; MDMX, MDM 97.4 0.00011 3.7E-09 54.8 4.0 77 58-135 21-106 (130)
5 3fea_A MDM4 protein; HDMX, HDM 97.2 0.00022 7.7E-09 51.0 3.6 74 61-135 15-97 (100)
6 2z5s_M MDM4 protein, zebrafish 97.2 0.00037 1.3E-08 52.4 4.4 76 57-133 19-103 (140)
7 1ycq_A MDM2, MDM2; anti-oncoge 97.1 0.00069 2.3E-08 49.0 5.4 74 60-134 10-92 (107)
8 1z1m_A Ubiquitin-protein ligas 97.1 0.00039 1.3E-08 51.1 3.9 73 61-134 27-108 (119)
9 2axi_A Ubiquitin-protein ligas 96.8 0.00055 1.9E-08 50.1 2.3 73 60-133 10-91 (115)
10 2kwl_A ACP, acyl carrier prote 86.5 0.56 1.9E-05 30.0 3.1 57 73-133 1-57 (84)
11 1f80_D Acyl carrier protein; t 73.2 2 7E-05 26.9 2.3 54 76-133 2-55 (81)
12 2dnw_A Acyl carrier protein; A 69.6 2.7 9.2E-05 27.9 2.3 58 72-133 6-63 (99)
13 2lol_A ACP, acyl carrier prote 68.1 5.5 0.00019 24.8 3.5 53 77-133 2-54 (81)
14 2cnr_A FAS, ACP, acyl carrier 67.4 5.3 0.00018 24.8 3.3 53 77-133 3-55 (82)
15 3e6c_C CPRK, cyclic nucleotide 65.9 4.7 0.00016 29.8 3.2 63 66-132 181-250 (250)
16 1dv5_A APO-DCP, APO-D-alanyl c 63.7 3.8 0.00013 26.2 2.0 52 78-133 1-52 (80)
17 2zcw_A TTHA1359, transcription 55.5 6.5 0.00022 28.0 2.3 51 61-115 144-196 (202)
18 1ft9_A Carbon monoxide oxidati 54.5 8 0.00027 27.9 2.7 55 57-115 157-214 (222)
19 1x3o_A Acyl carrier protein; s 53.0 4.9 0.00017 24.8 1.1 53 77-133 1-53 (80)
20 3fx3_A Cyclic nucleotide-bindi 53.0 17 0.00059 26.2 4.3 51 61-116 176-228 (237)
21 2fmy_A COOA, carbon monoxide o 52.6 7.3 0.00025 28.0 2.2 55 57-115 161-218 (220)
22 3b02_A Transcriptional regulat 51.1 7.5 0.00026 27.6 2.0 52 61-116 137-190 (195)
23 1klp_A ACP, ACPM, meromycolate 50.9 9.8 0.00034 25.9 2.5 54 76-133 2-55 (115)
24 2jq4_A AGR_C_4658P, hypothetic 49.1 7.1 0.00024 26.5 1.5 56 75-133 16-71 (105)
25 2l4b_A Acyl carrier protein; i 49.1 2.2 7.4E-05 27.5 -1.1 56 76-133 3-59 (88)
26 2ava_A ACP I, acyl carrier pro 47.8 12 0.00042 23.2 2.5 52 78-133 1-52 (82)
27 1af8_A Actinorhodin polyketide 47.0 13 0.00045 23.4 2.5 50 82-133 6-56 (86)
28 2gau_A Transcriptional regulat 45.9 7.6 0.00026 28.1 1.4 46 66-115 184-230 (232)
29 2cgq_A Acyl carrier protein AC 44.9 7.2 0.00024 27.3 1.0 49 75-133 25-73 (113)
30 3e97_A Transcriptional regulat 44.5 12 0.0004 27.1 2.2 46 66-115 179-225 (231)
31 2bgc_A PRFA; bacterial infecti 43.6 12 0.00041 27.4 2.2 49 63-115 169-220 (238)
32 1vku_A Acyl carrier protein; T 41.0 17 0.00058 24.5 2.5 54 75-133 11-64 (100)
33 3d0s_A Transcriptional regulat 40.4 13 0.00045 26.7 1.9 48 62-113 176-225 (227)
34 3gzm_A Acyl carrier protein; h 39.7 16 0.00055 22.8 2.0 52 78-133 2-53 (81)
35 3ejb_A Acyl carrier protein; p 39.5 10 0.00035 25.2 1.1 55 75-133 16-70 (97)
36 3la7_A Global nitrogen regulat 36.7 11 0.00037 27.8 1.0 54 57-114 187-242 (243)
37 2qnw_A Acyl carrier protein; m 36.0 16 0.00056 22.8 1.6 53 77-133 3-55 (82)
38 4ev0_A Transcription regulator 35.8 36 0.0012 24.0 3.6 47 65-115 166-213 (216)
39 3ce7_A Specific mitochodrial a 35.2 18 0.00063 24.6 1.9 52 77-133 15-71 (107)
40 3dv8_A Transcriptional regulat 34.4 35 0.0012 24.1 3.4 45 66-114 173-218 (220)
41 2cpg_A REPA protein, transcrip 31.5 54 0.0018 18.1 3.3 33 62-94 7-44 (45)
42 1nq4_A Oxytetracycline polyket 31.1 61 0.0021 21.1 3.9 53 76-133 3-55 (95)
43 2k9i_A Plasmid PRN1, complete 30.1 24 0.00083 20.4 1.6 37 59-95 11-52 (55)
44 2ld7_A Histone deacetylase com 29.9 42 0.0014 23.2 3.0 16 84-99 30-45 (94)
45 3dkw_A DNR protein; CRP-FNR, H 28.5 17 0.00059 25.9 0.9 43 66-112 182-225 (227)
46 1jw2_A Hemolysin expression mo 27.5 9.1 0.00031 25.6 -0.7 8 84-91 65-72 (72)
47 3jyw_F 60S ribosomal protein L 27.2 37 0.0013 26.2 2.6 39 91-129 118-157 (213)
48 1fh1_A NODF, nodulation protei 26.9 26 0.00089 22.6 1.4 50 82-133 5-59 (92)
49 2bj7_A Nickel responsive regul 25.6 44 0.0015 23.8 2.6 38 62-99 8-51 (138)
50 2hza_A Nickel-responsive regul 25.5 26 0.00089 24.8 1.4 40 62-101 6-51 (133)
51 2k6m_S Supervillin; SVHP, HP, 25.1 15 0.0005 24.0 -0.1 32 96-128 24-55 (67)
52 1yu8_X Villin; alpha helix, 3- 24.3 21 0.0007 23.3 0.5 32 96-128 24-55 (67)
53 1o5l_A Transcriptional regulat 24.0 16 0.00056 26.2 0.0 38 66-107 168-205 (213)
54 2l3v_A ACP, acyl carrier prote 24.0 22 0.00076 21.7 0.6 50 80-133 3-52 (79)
55 1qzp_A Dematin; villin headpie 23.8 17 0.00057 23.7 0.0 32 96-128 25-56 (68)
56 1zyb_A Transcription regulator 23.7 33 0.0011 24.9 1.6 43 62-108 185-228 (232)
57 1ujs_A Actin-binding LIM prote 23.4 20 0.00067 24.6 0.3 32 96-128 39-70 (88)
58 2lfh_A DNA-binding protein inh 23.2 1E+02 0.0034 20.1 3.8 27 66-92 34-64 (68)
59 1z4h_A TORI, TOR inhibition pr 23.2 41 0.0014 20.6 1.8 27 65-98 13-39 (66)
60 3fwk_A FMN adenylyltransferase 23.0 28 0.00097 28.6 1.3 12 85-96 204-215 (308)
61 1kqn_A Nmnat, nicotinamide mon 22.2 16 0.00056 29.0 -0.3 16 82-97 240-255 (279)
62 3h05_A Uncharacterized protein 22.0 11 0.00038 28.0 -1.3 16 82-97 156-171 (177)
63 2qtr_A Nicotinate (nicotinamid 21.9 18 0.0006 26.1 -0.2 34 63-96 153-187 (189)
64 2oq2_A Phosphoadenosine phosph 21.8 32 0.0011 26.6 1.3 12 85-96 194-205 (261)
65 1nup_A FKSG76; NAD biosynthesi 20.8 23 0.00077 27.5 0.2 18 82-99 219-236 (252)
66 2pzm_A Putative nucleotide sug 20.5 1.3E+02 0.0043 22.9 4.5 38 66-104 289-327 (330)
67 2wvf_A Hpnikr, putative nickel 20.2 57 0.002 23.6 2.3 37 61-97 14-56 (148)
68 1j9i_A GPNU1 DBD;, terminase s 20.2 48 0.0017 20.2 1.7 22 66-95 6-27 (68)
No 1
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.97 E-value=3.3e-31 Score=187.80 Aligned_cols=81 Identities=27% Similarity=0.501 Sum_probs=77.2
Q ss_pred CCCCCccccCCHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccCC
Q 032632 55 PTGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFV 134 (137)
Q Consensus 55 ~~G~~k~~~lSpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl~ 134 (137)
..++.++|.+|++|++|+|..++||+||++.||+|||+||||||+||+.|+||++|++||| +++|.|++|+++|++||.
T Consensus 5 ~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg-~~~v~~~~~~klL~~Hl~ 83 (93)
T 1v31_A 5 SSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFG-EEKLKFTMVSQKISHHLS 83 (93)
T ss_dssp CCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSC-SSEEETTTTHHHHHHHCB
T ss_pred CCCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhC-CCcccHHHHHHHHHHhcC
Confidence 4667899999999999999999999999999999999999999999999999999999997 899999999999999997
Q ss_pred CC
Q 032632 135 KT 136 (137)
Q Consensus 135 k~ 136 (137)
+.
T Consensus 84 p~ 85 (93)
T 1v31_A 84 PP 85 (93)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 2
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=99.96 E-value=1.5e-30 Score=184.56 Aligned_cols=79 Identities=32% Similarity=0.603 Sum_probs=75.4
Q ss_pred CCCCccccCCHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccCCC
Q 032632 56 TGISKVSPVSPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHFVK 135 (137)
Q Consensus 56 ~G~~k~~~lSpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl~k 135 (137)
..-.++|.+|++|++|+|..++||+||++.||+|||+||||||+||+.|+||++|++||| +++|.|++|+++|++||.+
T Consensus 6 ~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg-~~~v~~~~~~klL~~Hl~p 84 (93)
T 1uhr_A 6 SGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFE-SQRMKFSEIPQRLHALLMP 84 (93)
T ss_dssp SSSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTC-CSSEEGGGSHHHHHHHEEC
T ss_pred ccCCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhC-CCcccHHHHHHHHHHhcCC
Confidence 445678999999999999999999999999999999999999999999999999999997 8999999999999999976
No 3
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=99.96 E-value=2.2e-29 Score=181.61 Aligned_cols=76 Identities=28% Similarity=0.433 Sum_probs=71.4
Q ss_pred ccccCCHHHHhhh---CC---CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 60 KVSPVSPALAKFL---GA---PEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 60 k~~~lSpeLa~fL---G~---~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
-.-++|++|++|| |. +++||++|++.||+|||+||||||+||+.|+||++|+.||| +++|.|++|+++|++||
T Consensus 12 ~~~w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg-~~~v~~~~m~klL~~Hl 90 (101)
T 1v32_A 12 FVGWGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFG-TRTIFRMKVYDLLEKHY 90 (101)
T ss_dssp SSSSSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTC-CSEEETTHHHHHHHHHS
T ss_pred ecccCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHC-CCcccHHHHHHHHHHHc
Confidence 3348999999999 88 57999999999999999999999999999999999999997 89999999999999999
Q ss_pred CCC
Q 032632 134 VKT 136 (137)
Q Consensus 134 ~k~ 136 (137)
.++
T Consensus 91 ~~~ 93 (101)
T 1v32_A 91 KEN 93 (101)
T ss_dssp CSC
T ss_pred Ccc
Confidence 874
No 4
>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}
Probab=97.43 E-value=0.00011 Score=54.78 Aligned_cols=77 Identities=13% Similarity=0.216 Sum_probs=64.8
Q ss_pred CCccccCCHHHHhhh---CC--CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCccCHHH---HHHH
Q 032632 58 ISKVSPVSPALAKFL---GA--PEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNAVGFLE---IGKL 128 (137)
Q Consensus 58 ~~k~~~lSpeLa~fL---G~--~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~v~~~e---l~kl 128 (137)
-...++--++|-.+| |. ...|+.||+-.+=+||-.+.|.||.+..+|.|. |.|-++|| ++++.+-| |.+.
T Consensus 21 q~~~Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llG-v~sFSVkdp~~L~~m 99 (130)
T 3dac_M 21 EGTQVHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLE-VGSFSVKNPSPLYEM 99 (130)
T ss_dssp --CEEEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHT-SSEEETTSCHHHHHH
T ss_pred cceecCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccC-CcceeecCcHHHHHH
Confidence 334566777888887 44 679999999999999999999999999999996 78889998 89998877 8888
Q ss_pred hcccCCC
Q 032632 129 LSPHFVK 135 (137)
Q Consensus 129 L~~Hl~k 135 (137)
|.++|+.
T Consensus 100 L~~NLv~ 106 (130)
T 3dac_M 100 LKRNLVI 106 (130)
T ss_dssp HHHHEEE
T ss_pred HHhheec
Confidence 8888764
No 5
>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A
Probab=97.24 E-value=0.00022 Score=51.04 Aligned_cols=74 Identities=14% Similarity=0.245 Sum_probs=63.0
Q ss_pred cccCCHHHHhhh---CC--CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCccCHH---HHHHHhcc
Q 032632 61 VSPVSPALAKFL---GA--PEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNAVGFL---EIGKLLSP 131 (137)
Q Consensus 61 ~~~lSpeLa~fL---G~--~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~v~~~---el~klL~~ 131 (137)
.++--++|-.+| |. ...|+.||+..+=+||-.+.|.||.+..+|.|. |.|-++|| ++++.+- .|.+.|.+
T Consensus 15 ~Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G-~~sFsvkdp~~l~~ml~~ 93 (100)
T 3fea_A 15 QVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLG-RQSFSVKDPSPLYDMLRK 93 (100)
T ss_dssp CBEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHT-CSEEETTCCHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccC-CcceeecCchHHHHHHHh
Confidence 456667788777 44 679999999999999999999999999999997 77888998 8988874 78888888
Q ss_pred cCCC
Q 032632 132 HFVK 135 (137)
Q Consensus 132 Hl~k 135 (137)
||+.
T Consensus 94 nLv~ 97 (100)
T 3fea_A 94 NLVT 97 (100)
T ss_dssp HEEC
T ss_pred hcee
Confidence 8764
No 6
>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M
Probab=97.18 E-value=0.00037 Score=52.35 Aligned_cols=76 Identities=13% Similarity=0.243 Sum_probs=61.3
Q ss_pred CCCccccCCHHHHhhh---CC--CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCccCHHH---HHH
Q 032632 57 GISKVSPVSPALAKFL---GA--PEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNAVGFLE---IGK 127 (137)
Q Consensus 57 G~~k~~~lSpeLa~fL---G~--~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~v~~~e---l~k 127 (137)
|-...++--++|-.|| |. ...|+-||+-.|-+||-.+.|.|+.+..+|.|. |.|-+||| ++++.+-| +.+
T Consensus 19 ~e~~~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~G-v~sFSVKdp~~ly~ 97 (140)
T 2z5s_M 19 GEGTQVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLE-VGSFSVKNPSPVYE 97 (140)
T ss_dssp -CCCCBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHT-SSEEETTBCHHHHH
T ss_pred cccceecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHH
Confidence 3334788888999998 44 679999999999999999999999999999997 77799998 88887743 445
Q ss_pred HhcccC
Q 032632 128 LLSPHF 133 (137)
Q Consensus 128 lL~~Hl 133 (137)
.|.+.|
T Consensus 98 ML~~NL 103 (140)
T 2z5s_M 98 MLKRNL 103 (140)
T ss_dssp HHHHHE
T ss_pred HHHHhc
Confidence 554443
No 7
>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1
Probab=97.14 E-value=0.00069 Score=49.02 Aligned_cols=74 Identities=18% Similarity=0.342 Sum_probs=59.5
Q ss_pred ccccCCHHHHhhh---CC--CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCccCHHH---HHHHhc
Q 032632 60 KVSPVSPALAKFL---GA--PEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNAVGFLE---IGKLLS 130 (137)
Q Consensus 60 k~~~lSpeLa~fL---G~--~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~v~~~e---l~klL~ 130 (137)
..++-.+.|-.+| |. ...|+.||+..+-+||-.+.|.|+.+..+|.|. |.|-++|| ++++.+-+ +.+.|.
T Consensus 10 ~~VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g-~~~Fsvkdp~~l~~ml~ 88 (107)
T 1ycq_A 10 KLVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFG-VQEFSVKEPRRLYAMIS 88 (107)
T ss_dssp CCBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHT-CSEEETTCHHHHHHHHH
T ss_pred cccCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHHHHH
Confidence 3566677788887 43 679999999999999999999999999999997 77799998 88887754 445555
Q ss_pred ccCC
Q 032632 131 PHFV 134 (137)
Q Consensus 131 ~Hl~ 134 (137)
+.++
T Consensus 89 ~nLv 92 (107)
T 1ycq_A 89 RNLV 92 (107)
T ss_dssp TTEE
T ss_pred Hhcc
Confidence 5443
No 8
>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}
Probab=97.11 E-value=0.00039 Score=51.11 Aligned_cols=73 Identities=18% Similarity=0.294 Sum_probs=58.5
Q ss_pred cccCCHHHHhhh---CC--CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCccCHH---HHHHHhcc
Q 032632 61 VSPVSPALAKFL---GA--PEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNAVGFL---EIGKLLSP 131 (137)
Q Consensus 61 ~~~lSpeLa~fL---G~--~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~v~~~---el~klL~~ 131 (137)
.++-.++|-.+| |. ...|+.||+..+-+||-.+.|.|+.+..+|.|. |.|-+||| ++++.+- .+.+.|.+
T Consensus 27 ~VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g-~~~Fsvkdp~~l~~ml~~ 105 (119)
T 1z1m_A 27 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFG-VPSFSVKEHRKIYTMIYR 105 (119)
T ss_dssp CCCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSC-CSCEETTCHHHHHHHHSC
T ss_pred cccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHHHHHH
Confidence 455556666666 44 679999999999999999999999999999997 77799998 8888774 55666666
Q ss_pred cCC
Q 032632 132 HFV 134 (137)
Q Consensus 132 Hl~ 134 (137)
.|+
T Consensus 106 nLv 108 (119)
T 1z1m_A 106 NLV 108 (119)
T ss_dssp SCC
T ss_pred hcc
Confidence 554
No 9
>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*
Probab=96.78 E-value=0.00055 Score=50.06 Aligned_cols=73 Identities=16% Similarity=0.279 Sum_probs=58.8
Q ss_pred ccccCCHHHHhhh---CC--CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCccCHH---HHHHHhc
Q 032632 60 KVSPVSPALAKFL---GA--PEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNAVGFL---EIGKLLS 130 (137)
Q Consensus 60 k~~~lSpeLa~fL---G~--~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~v~~~---el~klL~ 130 (137)
..++-.++|-.+| |. ...|+.||+-.+-+||-.+.|.||.+..+|.|. |.|-+||| ++++.+- .+.+.|.
T Consensus 10 ~~VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g-~~~Fsvkdp~~l~~ml~ 88 (115)
T 2axi_A 10 TLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFG-VPSFSVKEHRKIYTMIY 88 (115)
T ss_dssp CEEEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHS-SSEEETTCHHHHHHHHH
T ss_pred cccCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccC-ccceeecCcHHHHHHHH
Confidence 3566677788887 43 578999999999999999999999999999997 77799998 8888774 4555555
Q ss_pred ccC
Q 032632 131 PHF 133 (137)
Q Consensus 131 ~Hl 133 (137)
+-|
T Consensus 89 ~nL 91 (115)
T 2axi_A 89 RNL 91 (115)
T ss_dssp TTE
T ss_pred Hhc
Confidence 444
No 10
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=86.54 E-value=0.56 Score=29.99 Aligned_cols=57 Identities=14% Similarity=0.242 Sum_probs=43.9
Q ss_pred CCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 73 GAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 73 G~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
|...|+|.++...|.++|.+.--.++ ..|..|..|..-+| -|++.+.+|...|+.+|
T Consensus 1 ~~~~m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG-~DSl~~vel~~~le~~f 57 (84)
T 2kwl_A 1 GPGSMDNDEIFSKVRSIISEQLDKKE---DEITTDSRFVEDLN-ADSLDIYELLYLLEEAF 57 (84)
T ss_dssp CCCCSTHHHHHHHHHHHHHHHHCCCG---GGCCTTTHHHHTSS-SCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCc---ccCCCCCchhhhcC-CCHHHHHHHHHHHHHHH
Confidence 45679999999999999988632332 46889999966676 68888888888877665
No 11
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=73.18 E-value=2 Score=26.90 Aligned_cols=54 Identities=9% Similarity=0.139 Sum_probs=39.3
Q ss_pred CcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 76 EASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 76 e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
.|++.++...|.++|.+.-=.++ ..|..|..|..-+| -|++.+.+|...|+.+|
T Consensus 2 ~m~~~~i~~~l~~~l~~~l~~~~---~~i~~~~~l~~dlG-~DSl~~vel~~~le~~f 55 (81)
T 1f80_D 2 PLGSADTLERVTKIIVDRLGVDE---ADVKLEASFKEDLG-ADXLDVVELVMELEDEF 55 (81)
T ss_dssp ---CCHHHHHHHHHHHHHSSCCS---SCCCTTCBHHHHSC-CCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCH---HhCCCccchHHHcC-CcHHHHHHHHHHHHHHh
Confidence 47888899999999887642333 36889999966676 68888888888887765
No 12
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.57 E-value=2.7 Score=27.91 Aligned_cols=58 Identities=12% Similarity=0.182 Sum_probs=38.8
Q ss_pred hCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 72 LGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 72 LG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
.+.+.+++.++...|.+.|.+.--.++ ..|..|..|..-+| -|++.+.+|...|+.+|
T Consensus 6 ~~m~~m~~~~i~~~l~~~l~~~l~~~~---~~i~~d~~l~~dlG-~DSL~~vel~~~le~~f 63 (99)
T 2dnw_A 6 SGMPPLTLEGIQDRVLYVLKLYDKIDP---EKLSVNSHFMKDLG-LDSLDQVEIIMAMEDEF 63 (99)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHCTTSCT---TTCCTTCCCCCCCC-CCHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCH---hhCCCCCchhhhcC-CCHHHHHHHHHHHHHHH
Confidence 345679999999999999988632333 24666666632344 56777777766666554
No 13
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=68.10 E-value=5.5 Score=24.80 Aligned_cols=53 Identities=8% Similarity=0.137 Sum_probs=39.1
Q ss_pred cCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 77 ASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 77 ~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
++|.++...|.++|.+.-=.++ ..|..|..|..-+| -|++.+.+|...|+.+|
T Consensus 2 m~~~~i~~~l~~ii~~~l~~~~---~~i~~~~~l~~dlG-~DSl~~~el~~~le~~f 54 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNKDK---AIITTDSRFIEDLK-ADSLDTVELMMAIEVEY 54 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCCCT---TTCCTTCCHHHHTT-CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCh---hhCCCCCcHHHhcC-CcHHHHHHHHHHHHHHH
Confidence 6888999999999887532333 35888888865666 58888888887777655
No 14
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=67.38 E-value=5.3 Score=24.80 Aligned_cols=53 Identities=11% Similarity=0.153 Sum_probs=38.7
Q ss_pred cCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 77 ASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 77 ~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
++|.++...|.++|.+.-=.++ ..|..|..|..-+| -|++.+.+|...|+.+|
T Consensus 3 m~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~dlG-~DSl~~~~l~~~le~~f 55 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGIPV---EDVKLDKSFTDDLD-VDSLSMVEVVVAAEERF 55 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCT---TTCCTTSBTTTTSC-CCHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCCcchhhccC-CChHHHHHHHHHHHHHh
Confidence 7899999999999987642332 35777777754455 57888888888887766
No 15
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=65.86 E-value=4.7 Score=29.84 Aligned_cols=63 Identities=17% Similarity=0.309 Sum_probs=35.2
Q ss_pred HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCCCCc------cCHHHHHHHhccc
Q 032632 66 PALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEGKNA------VGFLEIGKLLSPH 132 (137)
Q Consensus 66 peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg~d~------v~~~el~klL~~H 132 (137)
.+|++++|++.. . +.++..-.++.|+.+-..+++++.| +.|+.+.++... -.+..+.++|..|
T Consensus 181 ~~iA~~lG~sr~---t-vsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~a~~~~~~~~~~~~~~~~l~~~~~~~ 250 (250)
T 3e6c_C 181 KSIGEITGVHHV---T-VSRVLASLKRENILDKKKNKIIVYNLGELKHLSEQTSYYSDPNSSSVDKLAAALDHH 250 (250)
T ss_dssp HHHHHHHTCCHH---H-HHHHHHHHHHTTSEEECSSEEEESCHHHHHHHHTSSCCCC-----------------
T ss_pred HHHHHHhCCcHH---H-HHHHHHHHHHCCCeEeCCCEEEEecHHHHHHHHccCcccccCCchhHHHHHHhhccC
Confidence 578999997543 3 3344455667888888888888888 889998874211 2334555566554
No 16
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=63.75 E-value=3.8 Score=26.15 Aligned_cols=52 Identities=10% Similarity=-0.013 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 78 SRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 78 SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
++.++...|.+||.+.--.++ ..|..|..|..+. +-|++.+.+|.-.|..+|
T Consensus 1 ~~~~i~~~i~~il~~~~~~~~---~~i~~d~~l~~~g-~lDSl~~velv~~lE~~f 52 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGSDD---VKKNLDLNLFETG-LLDSMGTVQLLLELQSQF 52 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTSSS---TTTCSSCCSSTTS-SCCSHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHHHHHhCCCc---ccCCCCcchhhcc-CcChHHHHHHHHHHHHHh
Confidence 467888889999987653332 2478888887764 378999999999998887
No 17
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=55.53 E-value=6.5 Score=27.98 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=35.8
Q ss_pred cccCC-HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhC
Q 032632 61 VSPVS-PALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFE 115 (137)
Q Consensus 61 ~~~lS-peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFg 115 (137)
...+| .+|++++|.+..| | .++..-.++.|+..-+.+++++.| +.|+.+.+
T Consensus 144 ~~~~t~~~lA~~lg~sr~t---v-sR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~~~ 196 (202)
T 2zcw_A 144 VLKATHDELAAAVGSVRET---V-TKVIGELAREGYIRSGYGKIQLLDLKGLKELAE 196 (202)
T ss_dssp EEECCHHHHHHHHTCCHHH---H-HHHHHHHHHTTSEEEETTEEEESCHHHHHHHHT
T ss_pred ccCCCHHHHHHHhCCCHHH---H-HHHHHHHHHCCCEEeCCCEEEEeCHHHHHHHhc
Confidence 34555 6799999985433 3 333344578888887778888888 67888876
No 18
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=54.55 E-value=8 Score=27.94 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=35.7
Q ss_pred CCCccccCC-HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCc-ccccc-hhHHhhhC
Q 032632 57 GISKVSPVS-PALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKR-EILCD-EKLKAIFE 115 (137)
Q Consensus 57 G~~k~~~lS-peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr-~I~cD-ekLk~LFg 115 (137)
|..-...+| .+|++++|.+..|=+.++ .-.++.|+..-..++ +++.| +.|+.+.+
T Consensus 157 ~~~~~~~~t~~~lA~~lG~sr~tvsR~l----~~L~~~g~I~~~~~~i~~i~d~~~L~~~~~ 214 (222)
T 1ft9_A 157 GVIVSVDFTVEEIANLIGSSRQTTSTAL----NSLIKEGYISRQGRGHYTIPNLVRLKAAAD 214 (222)
T ss_dssp CCCCEECCCHHHHHHHHCSCHHHHHHHH----HHHHHTTSSEECSTTCEECSSHHHHHHTC-
T ss_pred cEEEeccCCHHHHHHHhCCcHHHHHHHH----HHHHHCCcEEEcCCceEEEcCHHHHHHHHh
Confidence 433444555 689999998654433333 345788888877777 46667 57888775
No 19
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=53.02 E-value=4.9 Score=24.77 Aligned_cols=53 Identities=9% Similarity=0.172 Sum_probs=35.5
Q ss_pred cCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 77 ASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 77 ~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
|+|.++...|.++|.+.-=.++ ..|..|..|..-+| -|++.+.+|...|+.+|
T Consensus 1 M~~~~i~~~l~~~i~~~l~~~~---~~i~~~~~l~~~lG-~DSl~~~~l~~~le~~f 53 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQVEP---EKVTLEARFIEDLG-ADSLDTVELIMGLEDEF 53 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCG---GGCCTTCBTTTTTC-CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCH---HHCCCcCcHHhhcC-ccHHHHHHHHHHHHHHH
Confidence 5788888888888877521222 35777777755555 57777777777776554
No 20
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=52.99 E-value=17 Score=26.24 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=34.2
Q ss_pred cccCC-HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCC
Q 032632 61 VSPVS-PALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEG 116 (137)
Q Consensus 61 ~~~lS-peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg 116 (137)
.++++ .+|++++|++ |..|...+ .-.++.|+ .-..+++++.| +.|+.+.+.
T Consensus 176 ~l~~t~~~iA~~lg~s---r~tvsR~l-~~L~~~gi-~~~~~~i~I~d~~~L~~~~~~ 228 (237)
T 3fx3_A 176 TLPYDKMLIAGRLGMK---PESLSRAF-SRLKAAGV-TVKRNHAEIEDIALLRDYAES 228 (237)
T ss_dssp ECCSCTHHHHHHTTCC---HHHHHHHH-HHHGGGTE-ECCTTEEEESCHHHHHHHHCC
T ss_pred EecCCHHHHHHHhCCC---HHHHHHHH-HHHHHCCe-EeeCCEEEEcCHHHHHHHhcC
Confidence 34443 6899999974 44444444 34556668 56667788888 788888874
No 21
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=52.62 E-value=7.3 Score=28.02 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=35.9
Q ss_pred CCCccccCC-HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCC-CCcccccc-hhHHhhhC
Q 032632 57 GISKVSPVS-PALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPE-NKREILCD-EKLKAIFE 115 (137)
Q Consensus 57 G~~k~~~lS-peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~-nKr~I~cD-ekLk~LFg 115 (137)
|..-...+| .+|++++|.+..|=+.+++ -.++.|+..-. .+++++.| +.|+.+.+
T Consensus 161 ~~~~~~~~t~~~lA~~lg~sr~tvsR~l~----~l~~~g~I~~~~~~~i~i~d~~~L~~~~~ 218 (220)
T 2fmy_A 161 GIKLELGLNTEEIALMLGTTRQTVSVLLN----DFKKMGILERVNQRTLLLKDLQKLKEFSS 218 (220)
T ss_dssp EEEEECSSCHHHHHHHHTSCHHHHHHHHH----HHHHTTSEEESSSSEEEESCHHHHHHHCC
T ss_pred cEEEeccCCHHHHHHHhCCcHHHHHHHHH----HHHHCCCEEEcCCCEEEEcCHHHHHHHhc
Confidence 433344555 6799999986544333333 34777888775 67788888 67777764
No 22
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=51.13 E-value=7.5 Score=27.56 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=34.9
Q ss_pred cccCC-HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhCC
Q 032632 61 VSPVS-PALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFEG 116 (137)
Q Consensus 61 ~~~lS-peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFgg 116 (137)
.+.+| .+|++++|.+.. .|.+.+- -.++.|+.+-..+++++.| +.|+.+.++
T Consensus 137 ~~~~t~~~lA~~lg~sr~---tvsR~l~-~L~~~g~I~~~~~~i~i~d~~~L~~~~~~ 190 (195)
T 3b02_A 137 YVTVSHEEIADATASIRE---SVSKVLA-DLRREGLIATAYRRVYLLDLAALEREAGS 190 (195)
T ss_dssp EEECCHHHHHHTTTSCHH---HHHHHHH-HHHHHTSEEEETTEEEECCHHHHHHHHCS
T ss_pred eccCCHHHHHHHhCCCHH---HHHHHHH-HHHHCCCEEecCCEEEEeCHHHHHHHhcc
Confidence 34555 579999998543 3333333 3466778777777888888 578888763
No 23
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=50.85 E-value=9.8 Score=25.87 Aligned_cols=54 Identities=11% Similarity=0.204 Sum_probs=38.9
Q ss_pred CcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 76 EASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 76 e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
.+++.++...|.++|.+.-=.++ ..|..|..|..-+| -|++.+.+|...|..+|
T Consensus 2 ~m~~~~i~~~l~~il~~~l~~~~---~~i~~d~~l~~dlG-~DSL~~vel~~~lE~~f 55 (115)
T 1klp_A 2 PVTQEEIIAGIAEIIEEVTGIEP---SEITPEKSFVDDLD-IDSLSMVEIAVQTEDKY 55 (115)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCT---TTCCTTCCTTTTTC-SHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhCcCH---HhCCCCCchhhccC-CCHHHHHHHHHHHHHHH
Confidence 37889999999999987532233 35777877755565 67888888877777665
No 24
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=49.12 E-value=7.1 Score=26.52 Aligned_cols=56 Identities=9% Similarity=-0.047 Sum_probs=36.3
Q ss_pred CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 75 PEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 75 ~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
...++.++...|.++|.+.--.+ -+...|..|..|.+ +| -|++.+.+|.-.|+..|
T Consensus 16 ~~~~~~~i~~~i~~il~~~l~~~-v~~~~i~~d~~l~d-lG-lDSL~~veLv~~lE~~f 71 (105)
T 2jq4_A 16 NLYFQGHMNATIREILAKFGQLP-TPVDTIADEADLYA-AG-LSSFASVQLMLGIEEAF 71 (105)
T ss_dssp -------CHHHHHHHHHHTSCCS-SCGGGCCTTSCGGG-GT-CCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhccC-CCcccCCCCCCHhh-cC-CCHHHHHHHHHHHHHHH
Confidence 45778889999999999863222 12356888999885 76 78898888888877654
No 25
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=49.08 E-value=2.2 Score=27.51 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=38.9
Q ss_pred CcCHHHHHHHHHHHHhHcC-CCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 76 EASRSDAVRQIWAHVKTHN-LQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 76 e~SR~eVvk~LW~YIK~nn-LQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
.|+|.+|...|.++|.+.- +.+ -+...|..|..|..-+| -|++.+.+|.-.|+.+|
T Consensus 3 ~m~~~~i~~~v~~~i~~~l~~~~-~~~~~i~~d~~l~~dlg-lDSl~~vel~~~lE~~f 59 (88)
T 2l4b_A 3 SMVSEEIKAQVMESVIGCLKLND-EQKQILSGTTNLAKDFN-LDSLDFVDLIMSLEERF 59 (88)
T ss_dssp SSSCHHHHHHHHHHHHHHHTCCH-HHHHSCCTTSCTTTTTT-CCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCC-CCHhhCCCCCchhhccC-CcHHHHHHHHHHHHHHH
Confidence 5789999999999998763 211 01134777777755565 68888888887777665
No 26
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=47.80 E-value=12 Score=23.23 Aligned_cols=52 Identities=13% Similarity=0.234 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 78 SRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 78 SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
||.++...|.+.|.+.--.+++ ..|..|..|.. +| -|++.+.+|...|+.+|
T Consensus 1 ~~~~i~~~l~~i~~~~l~~~~~--~~i~~~~~l~d-lG-~DSl~~vel~~~le~~f 52 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLALGAD--VVVTADSEFSK-LG-ADSLDTVEIVMNLEEEF 52 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTCSSS--SCCCSSCCSCC-CT-TCCSCHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHhCCCcc--cccCCCCchhh-cC-CCHHHHHHHHHHHHHHH
Confidence 5678888888888775323332 25777877764 55 68888888888887765
No 27
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=46.96 E-value=13 Score=23.36 Aligned_cols=50 Identities=6% Similarity=0.096 Sum_probs=31.5
Q ss_pred HHHHHHHHHhHcCCCCCC-CCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 82 AVRQIWAHVKTHNLQNPE-NKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 82 Vvk~LW~YIK~nnLQDP~-nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
+...|.++|.+.=-.++. +-..|..|..| .=+| -|++.+.+|...|+.+|
T Consensus 6 ~~~~l~~il~~~l~~~~~~~~~~i~~~~~l-~dlG-~DSL~~vel~~~le~~f 56 (86)
T 1af8_A 6 TTDDLRRALVECAGETDGTDLSGDFLDLRF-EDIG-YDSLALMETAARLESRY 56 (86)
T ss_dssp CHHHHHHHHHTTCCCCSCCCTTTCSSTTST-TTTT-CCTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhCCCcccccccCCCCCCh-hhcC-CCHHHHHHHHHHHHHHH
Confidence 444555555543223333 11246778887 4466 79999999999998876
No 28
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=45.88 E-value=7.6 Score=28.09 Aligned_cols=46 Identities=13% Similarity=0.184 Sum_probs=32.9
Q ss_pred HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhC
Q 032632 66 PALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFE 115 (137)
Q Consensus 66 peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFg 115 (137)
.+|++++|.+..|=+.+++. .++.|+.+-..+++++.| +.|+.+.+
T Consensus 184 ~~lA~~lg~sr~tvsR~l~~----l~~~g~I~~~~~~i~i~d~~~L~~~~~ 230 (232)
T 2gau_A 184 EELATLSNMTVSNAIRTLST----FVSERMLALDGKRIKIIDCDRLQKTAR 230 (232)
T ss_dssp HHHHHHTTSCHHHHHHHHHH----HHHTTSEEEETTEEEESCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH----HHHCCCEeeCCCEEEEeCHHHHHHHhh
Confidence 68999999875544444443 477888887778888888 57776653
No 29
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=44.88 E-value=7.2 Score=27.31 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=35.3
Q ss_pred CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 75 PEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 75 ~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
..| +.+|...|.++|.+.-= |..|..|..-+| -|++.+.||.-.|+..|
T Consensus 25 ~~M-~~ei~~~v~~il~e~l~--------I~~d~~l~~dLG-lDSLd~veLi~~LEe~F 73 (113)
T 2cgq_A 25 GAM-EEAINATIQRILRTDRG--------ITANQVLVDDLG-FDSLKLFQLITELEDEF 73 (113)
T ss_dssp -CH-HHHHHHHHHHHHTCCSC--------CCTTCBTTTTTC-CCHHHHHHHHHHHHHHH
T ss_pred ccc-HHHHHHHHHHHHHHHhC--------CCCCCchhhhcC-CCHHHHHHHHHHHHHHh
Confidence 357 89999999999987531 667777766665 67777777777766544
No 30
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=44.47 E-value=12 Score=27.07 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=33.0
Q ss_pred HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhC
Q 032632 66 PALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFE 115 (137)
Q Consensus 66 peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFg 115 (137)
.+|++++|++..| +.++..-.++.|+.+-+.+++++.| +.|+.+-.
T Consensus 179 ~~iA~~lg~sr~t----vsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~a~ 225 (231)
T 3e97_A 179 QDIMARTSSSRET----VSRVLKRLEAHNILEVSPRSVTLLDLAALEALSF 225 (231)
T ss_dssp HHHHHHHTCCHHH----HHHHHHHHHHTTSEEECSSCEEESCHHHHHHCC-
T ss_pred HHHHHHhCCcHHH----HHHHHHHHHHCCcEEecCCEEEEeCHHHHHHHHh
Confidence 6799999986543 3344445578888888888888888 56777654
No 31
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=43.58 E-value=12 Score=27.42 Aligned_cols=49 Identities=14% Similarity=0.113 Sum_probs=35.9
Q ss_pred cCC-HHHHhhhCCCC-cCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhC
Q 032632 63 PVS-PALAKFLGAPE-ASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFE 115 (137)
Q Consensus 63 ~lS-peLa~fLG~~e-~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFg 115 (137)
.+| .+|++++|++. .|=+.+++. .++.|+.+-..+++++.| +.|+.+.+
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~----l~~~glI~~~~~~i~I~d~~~L~~~~~ 220 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISK----LKQEKVIVYKNSCFYVQNLDYLKRYAP 220 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHH----HHHTTSEEEETTEEEESCHHHHHHHCH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHH----HHHCCCEEecCCEEEEeCHHHHHHHhc
Confidence 566 68999999876 555555554 478888877777888888 57877764
No 32
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=41.05 E-value=17 Score=24.48 Aligned_cols=54 Identities=6% Similarity=0.124 Sum_probs=41.1
Q ss_pred CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 75 PEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 75 ~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
..+-|+++...|+++|.+.--.+++ .|..|..| .-+| -|++.+.+|.-.|...|
T Consensus 11 ~~~~~~~i~~~l~~ila~~l~v~~~---~I~~d~~L-~dLG-lDSL~~veL~~~LE~~f 64 (100)
T 1vku_A 11 HHMERKKLIAKFVEIASEKMGKDLE---TVDEENTF-KELG-FDSIDVIDLVMFFEDEF 64 (100)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCCCCC---SCCTTSBT-TTTT-CCHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHCCCHH---HCCCCCCH-HHcC-CchHHHHHHHHHHHHHH
Confidence 4688999999999999886433433 58888888 5566 78888888887776654
No 33
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=40.44 E-value=13 Score=26.71 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=32.2
Q ss_pred ccCC-HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhh
Q 032632 62 SPVS-PALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAI 113 (137)
Q Consensus 62 ~~lS-peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~L 113 (137)
..+| .+|++++|.+..|=+.+++ -.++.|+.+-..+++++.| +.|+.+
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~----~l~~~g~I~~~~~~i~i~d~~~L~~~ 225 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALA----DFAHRGWIRLEGKSVLISDSERLARR 225 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHH----HHHHTTSEEEETTEEEESCHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHH----HHHHCCCEEecCCEEEEcCHHHHHHh
Confidence 3455 4699999986544443333 3577788777778888888 466654
No 34
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=39.66 E-value=16 Score=22.80 Aligned_cols=52 Identities=12% Similarity=0.143 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 78 SRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 78 SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
+|.++...|.+.|.+.==.++ ..|..|..|..-+| -|++.+.+|...|..+|
T Consensus 2 ~~~~i~~~l~~ii~~~l~~~~---~~i~~d~~l~~dlg-~DSl~~vel~~~le~~f 53 (81)
T 3gzm_A 2 SLKSTFDDIKKIISKQLSVEE---DKIQMNSNFTKDLG-ADSLDLVELIMALEEKF 53 (81)
T ss_dssp CHHHHHHHHHHHHHHHHTCCG---GGCCTTCBHHHHSC-CCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCcCH---HHCCCCCcchhhcC-CCHHHHHHHHHHHHHHH
Confidence 678888888888887532232 36888988876676 68888888877776654
No 35
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=39.52 E-value=10 Score=25.21 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=39.2
Q ss_pred CCcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 75 PEASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 75 ~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
..+++.+|...|.+.|.+.==.++ ..|..|..|..-+| -|++.+.+|.-.|+..|
T Consensus 16 ~~~t~~~i~~~l~~iia~~l~~~~---~~i~~d~~l~~dLG-lDSL~~vel~~~lE~~f 70 (97)
T 3ejb_A 16 RGSHMSTIEERVKKIIGEQLGVKQ---EEVTNNASFVEDLG-ADSLDTVELVMALEEEF 70 (97)
T ss_dssp --CCCCCHHHHHHHHHHHHSCCCT---TTSCTTCBTTTTTC-CCTTHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHCcCH---HHCCCCCCchhhcC-CCHHHHHHHHHHHHHHH
Confidence 467888899999999987632233 36788888865666 68888888888777655
No 36
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=36.67 E-value=11 Score=27.83 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=30.8
Q ss_pred CCCccccCC-HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhh
Q 032632 57 GISKVSPVS-PALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIF 114 (137)
Q Consensus 57 G~~k~~~lS-peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LF 114 (137)
|..-...++ .+|++++|.+..| | .++..-.++.|+.+-+.+++++.| +.|++.|
T Consensus 187 ~~~i~~~lt~~~lA~~lG~sr~t---v-sR~l~~L~~~GlI~~~~~~i~I~d~~~L~~~~ 242 (243)
T 3la7_A 187 GITIDLKLSHQAIAEAIGSTRVT---V-TRLLGDLREKKMISIHKKKITVHKPVTLSRQF 242 (243)
T ss_dssp SEEECSCCCHHHHHHHHTCCHHH---H-HHHHHHHHHTTSEEEETTEEEECC--------
T ss_pred CeEEeccCCHHHHHHHHCCcHHH---H-HHHHHHHHHCCCEEEcCCEEEECCHHHHHhhh
Confidence 333344454 7899999965433 3 334445577788877778888888 5565544
No 37
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=35.99 E-value=16 Score=22.78 Aligned_cols=53 Identities=8% Similarity=0.079 Sum_probs=37.2
Q ss_pred cCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 77 ASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 77 ~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
.++.++...|.++|.+.-=.++ ..|..|..|..-+| -|++.+.+|...|+.+|
T Consensus 3 ~~~~~i~~~l~~ii~~~l~~~~---~~i~~d~~l~~dlG-~DSl~~vel~~~le~~f 55 (82)
T 2qnw_A 3 SDDRPLLERVKDVVADQLGVDR---ARINPESNFIKDLD-ADSLDSVELVMAFEEKF 55 (82)
T ss_dssp CCSHHHHHHHHHHHHHHHCCCG---GGCCTTCBHHHHSC-CCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCCCH---hhCCCccchhhccC-CcHHHHHHHHHHHHHHH
Confidence 4677788888888877421222 46888888866676 68888888877776654
No 38
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=35.80 E-value=36 Score=23.95 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=33.3
Q ss_pred CHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhhC
Q 032632 65 SPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIFE 115 (137)
Q Consensus 65 SpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LFg 115 (137)
-.+|++++|.+..| +.++..-.++.|+.+-+.+++++.| +.|+.+-+
T Consensus 166 ~~~lA~~lg~sr~t----vsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~~a~ 213 (216)
T 4ev0_A 166 HHELAALAGTSRET----VSRVLHALAEEGVVRLGPGTVEVREAALLEEIAF 213 (216)
T ss_dssp HHHHHHHHTSCHHH----HHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHT
T ss_pred HHHHHHHhCCCHHH----HHHHHHHHHHCCCEEecCCEEEEeCHHHHHHHhh
Confidence 36899999985433 3344555677888877778888888 56777654
No 39
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=35.19 E-value=18 Score=24.56 Aligned_cols=52 Identities=12% Similarity=0.008 Sum_probs=38.5
Q ss_pred cCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHH-----hhhCCCCccCHHHHHHHhcccC
Q 032632 77 ASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLK-----AIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 77 ~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk-----~LFgg~d~v~~~el~klL~~Hl 133 (137)
+++.+|...|.++|.+.- .++ ..|..|..|. .=+| -|++.+.+|.-.|..+|
T Consensus 15 ~~~~~i~~~i~~il~e~l-~~~---~~i~~d~~l~~~~~~~dLg-lDSL~~veli~~lE~~f 71 (107)
T 3ce7_A 15 TDINAVTNYIVGMCQKFL-QKG---EKVTPSSKLEELRTREDRL-WDCLDTVEFVLDVEEIF 71 (107)
T ss_dssp TCHHHHHHHHHHHHHTTB-CTT---CCCCTTSCGGGSBBTTSSB-CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh-CCc---cccCCCCcccccCcccccC-CCHHHHHHHHHHHHHHH
Confidence 689999999999998762 232 3688888876 3344 67888888877777655
No 40
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=34.40 E-value=35 Score=24.08 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=31.2
Q ss_pred HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHhhh
Q 032632 66 PALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKAIF 114 (137)
Q Consensus 66 peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~LF 114 (137)
.+|++++|++..| +.++-.-.++.|+.+-+.+++++.| +.|+.+-
T Consensus 173 ~~lA~~lg~sr~t----vsR~l~~L~~~g~I~~~~~~i~i~d~~~L~~~a 218 (220)
T 3dv8_A 173 ETIANHLGSHREV----ITRMLRYFQVEGLVKLSRGKITILDSKRLETLQ 218 (220)
T ss_dssp HHHHHHHTCCHHH----HHHHHHHHHHTTSEEEETTEEEESCHHHHHHHH
T ss_pred HHHHHHhCCCHHH----HHHHHHHHHHCCCEEeCCCEEEEeCHHHHHHHh
Confidence 6899999986443 3344445577888887778888888 5566553
No 41
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=31.53 E-value=54 Score=18.14 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=21.4
Q ss_pred ccCCHHHHhhhCC----CCcCHHHHHH-HHHHHHhHcC
Q 032632 62 SPVSPALAKFLGA----PEASRSDAVR-QIWAHVKTHN 94 (137)
Q Consensus 62 ~~lSpeLa~fLG~----~e~SR~eVvk-~LW~YIK~nn 94 (137)
+.|+++|.+-|.. ...||++++. +|-+|+..++
T Consensus 7 v~l~~~l~~~Ld~~a~~~g~srS~~ir~ai~~~l~~~~ 44 (45)
T 2cpg_A 7 ITLSESVLENLEKMAREMGLSKSAMISVALENYKKGQE 44 (45)
T ss_dssp EEEEHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHCC-
T ss_pred EecCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHcc
Confidence 4566666665532 3469999987 6777887653
No 42
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=31.07 E-value=61 Score=21.07 Aligned_cols=53 Identities=8% Similarity=0.054 Sum_probs=36.8
Q ss_pred CcCHHHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 76 EASRSDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 76 e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
+++..+|...|-+++.... +.+-..|..|..|. -+| -|++.+.+|...|+.+|
T Consensus 3 ~~t~~~l~~ii~~~l~~~~---~~~~~~i~~d~~~~-dlG-~DSL~~vel~~~le~~f 55 (95)
T 1nq4_A 3 LLTLSDLLTLLRECAGEEE---SIDLGGDVEDVAFD-ALG-YDSLALLNTVGRIERDY 55 (95)
T ss_dssp CCCHHHHHHHHHHHHTCSS---TTCSCSCCSSSCHH-HHT-CCSHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHcccc---ccccccCCCCCChh-hhC-CCHHHHHHHHHHHHHHH
Confidence 5677777777777765432 22223588888885 456 68898889888887765
No 43
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=30.12 E-value=24 Score=20.40 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=27.4
Q ss_pred CccccCCHHHHhhhCC----CCcCHHHHHH-HHHHHHhHcCC
Q 032632 59 SKVSPVSPALAKFLGA----PEASRSDAVR-QIWAHVKTHNL 95 (137)
Q Consensus 59 ~k~~~lSpeLa~fLG~----~e~SR~eVvk-~LW~YIK~nnL 95 (137)
.-.+.|+++|.+-|.. ...|+++++. +|-+|+.++.-
T Consensus 11 ~i~vrl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~~~ 52 (55)
T 2k9i_A 11 KLGVYIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDNHDK 52 (55)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred eEEEEcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHh
Confidence 3457888888887743 3569999886 67889988763
No 44
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=29.89 E-value=42 Score=23.18 Aligned_cols=16 Identities=6% Similarity=0.065 Sum_probs=13.6
Q ss_pred HHHHHHHhHcCCCCCC
Q 032632 84 RQIWAHVKTHNLQNPE 99 (137)
Q Consensus 84 k~LW~YIK~nnLQDP~ 99 (137)
..||.|-+.++|+-|.
T Consensus 30 ~tLrrY~r~y~L~~~~ 45 (94)
T 2ld7_A 30 NTLRRYKRHFKLPTRP 45 (94)
T ss_dssp HHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHhCCCCCC
Confidence 4799999999997665
No 45
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=28.50 E-value=17 Score=25.88 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=29.3
Q ss_pred HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc-hhHHh
Q 032632 66 PALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD-EKLKA 112 (137)
Q Consensus 66 peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD-ekLk~ 112 (137)
.+|++++|++..| +.++..-.++.|+.+-+.+++++.| +.|+.
T Consensus 182 ~~lA~~lg~sr~t----vsR~l~~l~~~g~I~~~~~~i~i~d~~~L~~ 225 (227)
T 3dkw_A 182 QLVAGHLSIQPET----FSRIMHRLGDEGIIHLDGREISILDRERLEC 225 (227)
T ss_dssp HHHHHHTTSCHHH----HHHHHHHHHHHTSEEESSSCEEESCSTTTSS
T ss_pred HHHHHHhCCCHHH----HHHHHHHHHHCCcEEecCCEEEEeCHHHHhh
Confidence 7899999985443 3334445677788777778888888 44443
No 46
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=27.52 E-value=9.1 Score=25.58 Aligned_cols=8 Identities=13% Similarity=0.941 Sum_probs=5.5
Q ss_pred HHHHHHHh
Q 032632 84 RQIWAHVK 91 (137)
Q Consensus 84 k~LW~YIK 91 (137)
+.+|.||+
T Consensus 65 ~sVW~~V~ 72 (72)
T 1jw2_A 65 SSVWKFIR 72 (72)
T ss_dssp HHHHHHCC
T ss_pred HHHhHhcC
Confidence 56788764
No 47
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F
Probab=27.18 E-value=37 Score=26.21 Aligned_cols=39 Identities=10% Similarity=0.084 Sum_probs=18.9
Q ss_pred hHcCCCCCCCCcccccchhHH-hhhCCCCccCHHHHHHHh
Q 032632 91 KTHNLQNPENKREILCDEKLK-AIFEGKNAVGFLEIGKLL 129 (137)
Q Consensus 91 K~nnLQDP~nKr~I~cDekLk-~LFgg~d~v~~~el~klL 129 (137)
..++.-..++++.-+.|+.+. +-||...-+.+.+|..-|
T Consensus 118 ~KRg~~k~~~~~i~ltdn~iie~~lg~~gi~ciedli~ei 157 (213)
T 3jyw_F 118 YKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEI 157 (213)
T ss_dssp HHSCCCSSSCCSSCSSSHHHHSSSSCCSCCCCHHHHHHHH
T ss_pred HhcCcccCCCCeecCCcchHHHHhccCCCceeHHHHHHHH
Confidence 333432344455566677774 355532334555554433
No 48
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=26.91 E-value=26 Score=22.64 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=18.3
Q ss_pred HHHHHHHHHhHcCCCCCC-----CCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 82 AVRQIWAHVKTHNLQNPE-----NKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 82 Vvk~LW~YIK~nnLQDP~-----nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
+...|.++|.+.--.++. +...|..|..| .=+| -|++.+.+|.-.|..+|
T Consensus 5 i~~~i~~ii~~~~~~~~~~~~~~~~~~i~~d~~l-~dlg-~DSl~~vel~~~lE~~f 59 (92)
T 1fh1_A 5 LTLEIISAINKLVKAENGERTSVALGEITTDTEL-TSLG-IDSLGLADVLWDLEQLY 59 (92)
T ss_dssp CHHHHHHHHHHHC------------------------------CTTTTHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhccccccCCCHhhCCCCCCH-hhcC-CChHHHHHHHHHHHHHh
Confidence 445566666665443332 33468889988 5566 68899888888887765
No 49
>2bj7_A Nickel responsive regulator; transcription, repressor, NIKR, DNA- binding, metal-binding, transcription regulation; HET: PG4; 2.1A {Pyrococcus horikoshii} SCOP: a.43.1.3 d.58.18.4 PDB: 2bj1_A 2bj3_A* 2bj8_A* 2bj9_A*
Probab=25.56 E-value=44 Score=23.75 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=28.9
Q ss_pred ccCCHHHHhhhCC-----CCcCHHHHHH-HHHHHHhHcCCCCCC
Q 032632 62 SPVSPALAKFLGA-----PEASRSDAVR-QIWAHVKTHNLQNPE 99 (137)
Q Consensus 62 ~~lSpeLa~fLG~-----~e~SR~eVvk-~LW~YIK~nnLQDP~ 99 (137)
+.|+++|.+.+.. ...||+|++. +|-+|+.++..+..+
T Consensus 8 VsLp~~l~~~ld~~v~~~~y~sRSe~Ir~air~~l~~~~~~~~~ 51 (138)
T 2bj7_A 8 ISIPSKLLEKFDQIIEEIGYENRSEAIRDLIRDFIIRHEWEVGN 51 (138)
T ss_dssp EEEEHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTSCCCS
T ss_pred EEeCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhhccc
Confidence 5678888888753 3389999998 577799998876643
No 50
>2hza_A Nickel-responsive regulator; nickel-binding, ribbon-helix-helix, transcription factor, ME binding protein; HET: 3CM; 2.10A {Escherichia coli} SCOP: a.43.1.3 d.58.18.4 PDB: 1q5v_A* 2hzv_A 3od2_A*
Probab=25.53 E-value=26 Score=24.84 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=29.9
Q ss_pred ccCCHHHHhhhCC----C-CcCHHHHHH-HHHHHHhHcCCCCCCCC
Q 032632 62 SPVSPALAKFLGA----P-EASRSDAVR-QIWAHVKTHNLQNPENK 101 (137)
Q Consensus 62 ~~lSpeLa~fLG~----~-e~SR~eVvk-~LW~YIK~nnLQDP~nK 101 (137)
+.|+++|.+.+.. . ..||+|++. +|-+|+..+..++++..
T Consensus 6 VsLp~~ll~~lD~~v~~~~y~sRSe~Ir~air~~l~~~~~~~~~~~ 51 (133)
T 2hza_A 6 ITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEATQQHGTQ 51 (133)
T ss_dssp EEECHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHTCTTCE
T ss_pred EEECHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhhccCCc
Confidence 5678888888753 3 389999998 57779999877665543
No 51
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=25.11 E-value=15 Score=23.97 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=23.9
Q ss_pred CCCCCCcccccchhHHhhhCCCCccCHHHHHHH
Q 032632 96 QNPENKREILCDEKLKAIFEGKNAVGFLEIGKL 128 (137)
Q Consensus 96 QDP~nKr~I~cDekLk~LFgg~d~v~~~el~kl 128 (137)
.||..+..-..|+....||| ..+-.|..|+++
T Consensus 24 VD~~~lE~yLsdedF~~vFg-msr~eF~~LP~W 55 (67)
T 2k6m_S 24 VDPLKLEIYLTDEDFEFALD-MTRDEYNALPAW 55 (67)
T ss_dssp SBTTBCGGGSCHHHHHHHTS-SCHHHHTTSCHH
T ss_pred CCchHHHhhCCHHHHHHHHC-cCHHHHHHCcHH
Confidence 47777888999999999998 455555555443
No 52
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=24.28 E-value=21 Score=23.31 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=24.6
Q ss_pred CCCCCCcccccchhHHhhhCCCCccCHHHHHHH
Q 032632 96 QNPENKREILCDEKLKAIFEGKNAVGFLEIGKL 128 (137)
Q Consensus 96 QDP~nKr~I~cDekLk~LFgg~d~v~~~el~kl 128 (137)
.||..+..-..|+....||| ..+-.|..|+.+
T Consensus 24 VD~~~lE~yLsdedF~~vFg-ms~~eF~~LP~W 55 (67)
T 1yu8_X 24 VDPSAKENHLSDEDFKAVFG-MTRSAFANLPLW 55 (67)
T ss_dssp CCTTCGGGGSCHHHHHHHHS-SCHHHHHTSCHH
T ss_pred cChHHHHhcCCHHHHHHHHC-cCHHHHHHChHH
Confidence 57888889999999999998 555556555443
No 53
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=24.00 E-value=16 Score=26.19 Aligned_cols=38 Identities=11% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccc
Q 032632 66 PALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCD 107 (137)
Q Consensus 66 peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cD 107 (137)
.+|++++|.+..|=+.+++. .++.|+.+-..+++++.|
T Consensus 168 ~~lA~~lg~sr~tvsR~l~~----L~~~G~I~~~~~~i~I~d 205 (213)
T 1o5l_A 168 EELSRLFGCARPALSRVFQE----LEREGYIEKHGRRIKVLK 205 (213)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHH----HHHCCeEEEcCCEEEEec
Confidence 67899999876555555554 366677766666777777
No 54
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=23.96 E-value=22 Score=21.68 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhHcCCCCCCCCcccccchhHHhhhCCCCccCHHHHHHHhcccC
Q 032632 80 SDAVRQIWAHVKTHNLQNPENKREILCDEKLKAIFEGKNAVGFLEIGKLLSPHF 133 (137)
Q Consensus 80 ~eVvk~LW~YIK~nnLQDP~nKr~I~cDekLk~LFgg~d~v~~~el~klL~~Hl 133 (137)
.++...|.++|.+.-=.++ ..|..|..|..-+| -|++.+.+|...|+.+|
T Consensus 3 ~~i~~~l~~~~~~~l~~~~---~~i~~~~~l~~~lG-~DSl~~~~l~~~le~~f 52 (79)
T 2l3v_A 3 SDTAERVKKIVVEHLGVDA---DKVTEGASFIDDLG-ADSLDTVELVMAFEEEF 52 (79)
T ss_dssp THHHHHHHHHHHHHTCCCS---TTCCTTCCHHHHTC-CCSSSSSSTTTTHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCH---hhCCCCCccccccC-CCHHHHHHHHHHHHHHH
Confidence 3667777777776532222 35778888855565 56776666655555544
No 55
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=23.84 E-value=17 Score=23.71 Aligned_cols=32 Identities=13% Similarity=0.163 Sum_probs=24.1
Q ss_pred CCCCCCcccccchhHHhhhCCCCccCHHHHHHH
Q 032632 96 QNPENKREILCDEKLKAIFEGKNAVGFLEIGKL 128 (137)
Q Consensus 96 QDP~nKr~I~cDekLk~LFgg~d~v~~~el~kl 128 (137)
.||..+..-..|+-...||| ..+-.|..|+.+
T Consensus 25 VD~~~lE~yLsdedF~~vFg-msr~eF~~LP~W 56 (68)
T 1qzp_A 25 VDRMRLERHLSAEDFSRVFA-MSPEEFGKLALW 56 (68)
T ss_dssp CCGGGCGGGBCHHHHHHHSS-SCHHHHHHSCHH
T ss_pred CCchHHHhhCCHHHHHHHHC-cCHHHHHHChHH
Confidence 46777888899999999998 555666655544
No 56
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=23.67 E-value=33 Score=24.87 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=29.3
Q ss_pred ccCC-HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCCCCCcccccch
Q 032632 62 SPVS-PALAKFLGAPEASRSDAVRQIWAHVKTHNLQNPENKREILCDE 108 (137)
Q Consensus 62 ~~lS-peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP~nKr~I~cDe 108 (137)
..+| .+|++++|++..|=+.+++. .++.|+.+-..+++++.|.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~----l~~~glI~~~~~~i~I~d~ 228 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNE----LQDNGLIELHRKEILIPDA 228 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHH----HHHTTSCEEETTEEEESCG
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHH----HHHCCCEEecCCEEEEeCh
Confidence 4444 78999999865444444333 4778888777777888874
No 57
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=23.41 E-value=20 Score=24.64 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=24.3
Q ss_pred CCCCCCcccccchhHHhhhCCCCccCHHHHHHH
Q 032632 96 QNPENKREILCDEKLKAIFEGKNAVGFLEIGKL 128 (137)
Q Consensus 96 QDP~nKr~I~cDekLk~LFgg~d~v~~~el~kl 128 (137)
.||..+..-..|+.+..||| ..+-.|..|+++
T Consensus 39 VD~tklE~YLSdedF~~vFg-Msr~eF~~LP~W 70 (88)
T 1ujs_A 39 VDRTRLERHLSQEEFYQVFG-MTISEFDRLALW 70 (88)
T ss_dssp CCTTTGGGGSCTTHHHHHHS-SCHHHHTTSCHH
T ss_pred cCHHHHHhcCCHHHHHHHHC-cCHHHHHHChHH
Confidence 47888888999999999998 455556555443
No 58
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.23 E-value=1e+02 Score=20.11 Aligned_cols=27 Identities=7% Similarity=0.218 Sum_probs=21.1
Q ss_pred HHHHhhh----CCCCcCHHHHHHHHHHHHhH
Q 032632 66 PALAKFL----GAPEASRSDAVRQIWAHVKT 92 (137)
Q Consensus 66 peLa~fL----G~~e~SR~eVvk~LW~YIK~ 92 (137)
..|.+.+ ....+|+-|++...++||..
T Consensus 34 ~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~ 64 (68)
T 2lfh_A 34 SRLRELVPGVPRGTQLSQVEILQRVIDYILD 64 (68)
T ss_dssp HHHHHHCCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCCccHHHHHHHHHHHHHH
Confidence 4566665 23579999999999999974
No 59
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=23.18 E-value=41 Score=20.58 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=21.1
Q ss_pred CHHHHhhhCCCCcCHHHHHHHHHHHHhHcCCCCC
Q 032632 65 SPALAKFLGAPEASRSDAVRQIWAHVKTHNLQNP 98 (137)
Q Consensus 65 SpeLa~fLG~~e~SR~eVvk~LW~YIK~nnLQDP 98 (137)
-+++++++|++.. .||.+|+...+--|
T Consensus 13 ~~eva~~lgvsrs-------tiy~~~~~g~fP~p 39 (66)
T 1z4h_A 13 LKFIMADTGFGKT-------FIYDRIKSGDLPKA 39 (66)
T ss_dssp HHHHHHHHSSCHH-------HHHHHHHHHHCCCS
T ss_pred HHHHHHHHCcCHH-------HHHHHHHCCCCCCC
Confidence 3789999998655 78999998876544
No 60
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=23.05 E-value=28 Score=28.62 Aligned_cols=12 Identities=25% Similarity=0.509 Sum_probs=10.6
Q ss_pred HHHHHHhHcCCC
Q 032632 85 QIWAHVKTHNLQ 96 (137)
Q Consensus 85 ~LW~YIK~nnLQ 96 (137)
-||+||+.|+|-
T Consensus 204 DVW~YI~~~~LP 215 (308)
T 3fwk_A 204 NIWSFLLYSNEP 215 (308)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCC
Confidence 689999999885
No 61
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=22.21 E-value=16 Score=29.00 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.2
Q ss_pred HHHHHHHHHhHcCCCC
Q 032632 82 AVRQIWAHVKTHNLQN 97 (137)
Q Consensus 82 Vvk~LW~YIK~nnLQD 97 (137)
|-..+++||++|+|..
T Consensus 240 vP~~V~~YI~~~~LY~ 255 (279)
T 1kqn_A 240 VPDLVQEYIEKHNLYS 255 (279)
T ss_dssp BCHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHcCCcC
Confidence 3457899999999985
No 62
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=22.04 E-value=11 Score=27.98 Aligned_cols=16 Identities=6% Similarity=0.027 Sum_probs=8.4
Q ss_pred HHHHHHHHHhHcCCCC
Q 032632 82 AVRQIWAHVKTHNLQN 97 (137)
Q Consensus 82 Vvk~LW~YIK~nnLQD 97 (137)
|-..+++||++|+|..
T Consensus 156 vp~~V~~yI~~~~LY~ 171 (177)
T 3h05_A 156 TTPTVSELLLNEGLYR 171 (177)
T ss_dssp SCHHHHHHHHC-----
T ss_pred CCHHHHHHHHHcCCCC
Confidence 3346889999999973
No 63
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=21.94 E-value=18 Score=26.13 Aligned_cols=34 Identities=12% Similarity=0.087 Sum_probs=19.7
Q ss_pred cCC-HHHHhhhCCCCcCHHHHHHHHHHHHhHcCCC
Q 032632 63 PVS-PALAKFLGAPEASRSDAVRQIWAHVKTHNLQ 96 (137)
Q Consensus 63 ~lS-peLa~fLG~~e~SR~eVvk~LW~YIK~nnLQ 96 (137)
.|| ..+.+.+.....-+.-|-..+++||++|+|.
T Consensus 153 ~iSST~IR~~l~~g~~~~~lvP~~V~~yI~~~~lY 187 (189)
T 2qtr_A 153 AVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLY 187 (189)
T ss_dssp CCCHHHHHHHHHTTCCCTTTSCHHHHHHHHHTTGG
T ss_pred ccCHHHHHHHHHcCCCchhcCCHHHHHHHHHcCCc
Confidence 454 4455555221112233556889999999986
No 64
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=21.75 E-value=32 Score=26.63 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=10.7
Q ss_pred HHHHHHhHcCCC
Q 032632 85 QIWAHVKTHNLQ 96 (137)
Q Consensus 85 ~LW~YIK~nnLQ 96 (137)
-||+||+.|+|.
T Consensus 194 dV~~Yi~~~~lp 205 (261)
T 2oq2_A 194 QVKQYIDANNVP 205 (261)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHcCCC
Confidence 579999999986
No 65
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=20.85 E-value=23 Score=27.45 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=13.9
Q ss_pred HHHHHHHHHhHcCCCCCC
Q 032632 82 AVRQIWAHVKTHNLQNPE 99 (137)
Q Consensus 82 Vvk~LW~YIK~nnLQDP~ 99 (137)
|-..+++||++|+|....
T Consensus 219 vP~~V~~yI~~~~LY~~~ 236 (252)
T 1nup_A 219 IPDAVITYIKDHGLYTKG 236 (252)
T ss_dssp BCHHHHHHHHHTTCSCC-
T ss_pred CCHHHHHHHHHcCCcCCC
Confidence 445789999999998643
No 66
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Probab=20.47 E-value=1.3e+02 Score=22.94 Aligned_cols=38 Identities=8% Similarity=0.022 Sum_probs=30.3
Q ss_pred HHHHhhhCCC-CcCHHHHHHHHHHHHhHcCCCCCCCCccc
Q 032632 66 PALAKFLGAP-EASRSDAVRQIWAHVKTHNLQNPENKREI 104 (137)
Q Consensus 66 peLa~fLG~~-e~SR~eVvk~LW~YIK~nnLQDP~nKr~I 104 (137)
..|.+ ||-. ..+-.|.+..+++|.+++++.+|.+...|
T Consensus 289 ~~l~~-lG~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 327 (330)
T 2pzm_A 289 KTETE-FGWKAKVDFKDTITGQLAWYDKYGVTDIFSHLSA 327 (330)
T ss_dssp HHHHH-HCCCCCCCHHHHHHHHHHHHHHHCSCSCCCSSCC
T ss_pred chHHH-cCCcccCCHHHHHHHHHHHHHhhCcccccCcCCC
Confidence 44566 8864 46889999999999999999999876544
No 67
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 3pht_A 2ca9_A 2cad_A* 2caj_A 3lgh_A 2wvd_A 2wve_A* 2wvb_A 2y3y_A* 3qsi_B
Probab=20.25 E-value=57 Score=23.65 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=28.9
Q ss_pred cccCCHHHHhhhCC-----CCcCHHHHHH-HHHHHHhHcCCCC
Q 032632 61 VSPVSPALAKFLGA-----PEASRSDAVR-QIWAHVKTHNLQN 97 (137)
Q Consensus 61 ~~~lSpeLa~fLG~-----~e~SR~eVvk-~LW~YIK~nnLQD 97 (137)
.+.|+++|.+.|.. ...||+|++. +|-+|+.++..++
T Consensus 14 sVsLp~~ll~~lD~~v~~~~y~sRSe~Ir~Air~~l~~~~~~~ 56 (148)
T 2wvf_A 14 SVSLQQNLLDELDNRIIKNGYSSRSELVRDMIREKLVEDNWAE 56 (148)
T ss_dssp EEEEEHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHCSSCTT
T ss_pred EEEeCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 36788888888853 3379999998 5777999988765
No 68
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=20.21 E-value=48 Score=20.19 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=18.0
Q ss_pred HHHHhhhCCCCcCHHHHHHHHHHHHhHcCC
Q 032632 66 PALAKFLGAPEASRSDAVRQIWAHVKTHNL 95 (137)
Q Consensus 66 peLa~fLG~~e~SR~eVvk~LW~YIK~nnL 95 (137)
.+++++||++.- .|+.|++. ++
T Consensus 6 ~e~a~~LgvS~~-------Tl~rw~~~-G~ 27 (68)
T 1j9i_A 6 KQLADIFGASIR-------TIQNWQEQ-GM 27 (68)
T ss_dssp HHHHHHTTCCHH-------HHHHHTTT-TC
T ss_pred HHHHHHHCcCHH-------HHHHHHHC-CC
Confidence 689999999876 78999986 54
Done!