BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032633
(137 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JR1|A Chain A, Crystal Structure Of Putative Fructosamine-3-Kinase
(Yp_719053.1) From Haemophilus Somnus 129pt At 2.32 A
Resolution
pdb|3JR1|B Chain B, Crystal Structure Of Putative Fructosamine-3-Kinase
(Yp_719053.1) From Haemophilus Somnus 129pt At 2.32 A
Resolution
Length = 312
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 15/79 (18%)
Query: 37 IVAKGGKIKTDKPYGVNGG----MDLREGLDASGRKAKGKGVY----------QFVDKYG 82
++AK I YG+ L E L+ S K ++ Q DKYG
Sbjct: 84 LLAKTNSINVPLVYGIGNSQGHSFLLLEALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYG 143
Query: 83 ANVDGYS-PIYNENDWSPS 100
+ D + PIY NDW S
Sbjct: 144 LDFDTWLGPIYQPNDWQTS 162
>pdb|3S18|A Chain A, Crystal Structure Of A Plant Albumin From Cicer Arietinum
Showing Hemagglutination
pdb|3S18|B Chain B, Crystal Structure Of A Plant Albumin From Cicer Arietinum
Showing Hemagglutination
Length = 227
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 36 KIVAKGGKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFV-DKYGANVD 86
KI++ KI P+ G G+DA+ R KGK VY F DKY A +D
Sbjct: 96 KIISGPKKIADMFPFF--KGTVFENGIDAAFRSTKGKEVYLFKGDKY-ARID 144
>pdb|3V6N|A Chain A, Crystal Structure Of A Plant Albumin From Cicer Arietinum
Showing Hemagglutination
pdb|3V6N|B Chain B, Crystal Structure Of A Plant Albumin From Cicer Arietinum
Showing Hemagglutination
pdb|4HSD|A Chain A, Crystal Structure Of A New Form Of Plant Lectin From Cicer
Arietinum At 2.45 Angstrom Resolution
pdb|4HSD|B Chain B, Crystal Structure Of A New Form Of Plant Lectin From Cicer
Arietinum At 2.45 Angstrom Resolution
Length = 227
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 36 KIVAKGGKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFV-DKYGANVD 86
KI++ KI P+ G G+DA+ R KGK VY F DKY A +D
Sbjct: 96 KIISGPKKIADMFPFF--KGTVFENGIDAAFRSTKGKEVYLFKGDKY-ARID 144
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 25.8 bits (55), Expect = 7.7, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 16 PFTVEKSAARGLPSLAKTSFKIVAKGGKIKTD 47
P T+E + +G+P L K +F+ ++G I D
Sbjct: 269 PRTIEPAMEKGIPILVKNTFEPESEGTLITND 300
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 25.8 bits (55), Expect = 7.7, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 16 PFTVEKSAARGLPSLAKTSFKIVAKGGKIKTD 47
P T+E + +G+P L K +F+ ++G I D
Sbjct: 270 PRTIEPAMEKGIPILVKNTFEPESEGTLITND 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,010,969
Number of Sequences: 62578
Number of extensions: 179873
Number of successful extensions: 315
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 7
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 46 (22.3 bits)