Query 032633
Match_columns 137
No_of_seqs 53 out of 55
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 05:50:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pvc_A TRNA 5-methylaminomethy 39.0 8.7 0.0003 32.7 0.8 36 85-133 177-212 (689)
2 1h80_A IOTA-carrageenase; hydr 22.2 32 0.0011 29.4 1.4 16 92-107 387-402 (464)
3 3vyw_A MNMC2; tRNA wobble urid 19.0 22 0.00076 29.1 -0.2 16 85-100 192-207 (308)
4 2htj_A P fimbrial regulatory p 16.0 1.1E+02 0.0039 18.7 2.7 25 71-97 52-76 (81)
5 1nrp_R Receptor based peptide 15.8 47 0.0016 19.0 0.7 12 86-97 13-24 (26)
6 2yuy_A RHO GTPase activating p 14.6 1E+02 0.0035 20.4 2.3 18 81-98 21-38 (126)
7 1nro_R Receptor based peptide 14.1 60 0.0021 18.7 0.9 13 86-98 13-25 (27)
8 3arc_H Photosystem II reaction 12.9 75 0.0026 21.6 1.2 37 100-136 17-54 (65)
9 1v60_A BOLA1, riken cDNA 18100 12.6 74 0.0025 23.1 1.2 12 91-102 103-114 (123)
10 3tr3_A BOLA; cellular processe 12.5 14 0.00049 25.0 -2.5 8 92-99 74-81 (82)
No 1
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=38.98 E-value=8.7 Score=32.70 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=21.7
Q ss_pred CCCccccccCCCCCCCCCeeccChhHHHHHHHHHHHHhhhceeeeeecc
Q 032633 85 VDGYSPIYNENDWSPSGDVYTGGATGLAIWAVTLAGLLAGGALLVYNTS 133 (137)
Q Consensus 85 VDgYSPIY~p~eWs~~GD~Y~gG~~gL~~WA~tl~glL~~Gallvy~TS 133 (137)
.||+||-+|||-|++. +++.+ +-++.-|+.+...|+
T Consensus 177 lD~f~p~~np~~w~~~-----------~~~~l--~~~~~~g~~~~t~~~ 212 (689)
T 3pvc_A 177 LDGFAPAKNPDMWNEQ-----------LFNAM--ARMTRPGGTFSTFTA 212 (689)
T ss_dssp ECSSCC--CCTTCSHH-----------HHHHH--HHHEEEEEEEEESCC
T ss_pred ECCCCCCCChhhhhHH-----------HHHHH--HHHhCCCCEEEeccC
Confidence 6999999999999764 33333 335555666554444
No 2
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A
Probab=22.23 E-value=32 Score=29.44 Aligned_cols=16 Identities=31% Similarity=0.816 Sum_probs=14.3
Q ss_pred ccCCCCCCCCCeeccC
Q 032633 92 YNENDWSPSGDVYTGG 107 (137)
Q Consensus 92 Y~p~eWs~~GD~Y~gG 107 (137)
++||||+.+|..|.|=
T Consensus 387 ~~~~~~~~~~~~~~~~ 402 (464)
T 1h80_A 387 PTKEQWSKQGQIYIGP 402 (464)
T ss_dssp CCTTTCSSTTSCEEEC
T ss_pred cCCccccCCCcEEeCC
Confidence 5799999999999884
No 3
>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*
Probab=18.97 E-value=22 Score=29.14 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=14.2
Q ss_pred CCCccccccCCCCCCC
Q 032633 85 VDGYSPIYNENDWSPS 100 (137)
Q Consensus 85 VDgYSPIY~p~eWs~~ 100 (137)
.||+||-=+||-|++.
T Consensus 192 lDgFsP~kNPeLWs~e 207 (308)
T 3vyw_A 192 HDAFSPYKNPELWTLD 207 (308)
T ss_dssp ECCSCTTTSGGGGSHH
T ss_pred eCCCCcccCcccCCHH
Confidence 4999999999999864
No 4
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=15.99 E-value=1.1e+02 Score=18.67 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=16.1
Q ss_pred CCcceeeehhcccCCCCccccccCCCC
Q 032633 71 GKGVYQFVDKYGANVDGYSPIYNENDW 97 (137)
Q Consensus 71 gkGvYqfv~KyGANVDgYSPIY~p~eW 97 (137)
|++.|-.... ..+.+++++||.-|-
T Consensus 52 gr~~~y~l~~--~~~~~~~~~~~~~~~ 76 (81)
T 2htj_A 52 GMATYWFLKG--EKQAGQSCSSTTLEH 76 (81)
T ss_dssp SSSCEEEESS--CSSSSCGGGGCSSSC
T ss_pred CCcEEEEECh--hhhccHHHHHhHHhh
Confidence 3444433332 478999999997653
No 5
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=15.78 E-value=47 Score=19.01 Aligned_cols=12 Identities=25% Similarity=0.814 Sum_probs=9.9
Q ss_pred CCccccccCCCC
Q 032633 86 DGYSPIYNENDW 97 (137)
Q Consensus 86 DgYSPIY~p~eW 97 (137)
|-|.|.|..||.
T Consensus 13 dkyepfwedee~ 24 (26)
T 1nrp_R 13 DKYEPFWEDEEX 24 (26)
T ss_pred cccCcccccccc
Confidence 778999988774
No 6
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=14.60 E-value=1e+02 Score=20.44 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=16.0
Q ss_pred cccCCCCccccccCCCCC
Q 032633 81 YGANVDGYSPIYNENDWS 98 (137)
Q Consensus 81 yGANVDgYSPIY~p~eWs 98 (137)
||.++|+|+--++|++..
T Consensus 21 ~Gf~l~~~t~y~~~~~~~ 38 (126)
T 2yuy_A 21 FGFTLRHFIVYPPESAIQ 38 (126)
T ss_dssp CSCCBCCCCCCCCSSCCC
T ss_pred cceeecCccccCCHHHHH
Confidence 789999999999998886
No 7
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=14.10 E-value=60 Score=18.71 Aligned_cols=13 Identities=23% Similarity=0.741 Sum_probs=10.0
Q ss_pred CCccccccCCCCC
Q 032633 86 DGYSPIYNENDWS 98 (137)
Q Consensus 86 DgYSPIY~p~eWs 98 (137)
|-|.|.|..+|=.
T Consensus 13 dkyepfwedeekn 25 (27)
T 1nro_R 13 DKYEPFWEDEEKN 25 (27)
T ss_pred cccCccccchhhc
Confidence 7789999877643
No 8
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=12.91 E-value=75 Score=21.57 Aligned_cols=37 Identities=27% Similarity=0.261 Sum_probs=25.2
Q ss_pred CCCeecc-ChhHHHHHHHHHHHHhhhceeeeeeccccc
Q 032633 100 SGDVYTG-GATGLAIWAVTLAGLLAGGALLVYNTSALA 136 (137)
Q Consensus 100 ~GD~Y~g-G~~gL~~WA~tl~glL~~Gallvy~TSaLa 136 (137)
-|.+=-| |||-|..-+..|..+...=.|-|||.|-|-
T Consensus 17 yGKvaPGWGTtplMgv~m~Lf~vFl~iiLeIYNsSvlL 54 (65)
T 3arc_H 17 YGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLIL 54 (65)
T ss_dssp TTCCBSTTTTHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred cCcccCCccChhHHHHHHHHHHHHHHHHHHHhCcceee
Confidence 3444333 788887666666666666678899988663
No 9
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=12.63 E-value=74 Score=23.13 Aligned_cols=12 Identities=8% Similarity=0.318 Sum_probs=9.1
Q ss_pred cccCCCCCCCCC
Q 032633 91 IYNENDWSPSGD 102 (137)
Q Consensus 91 IY~p~eWs~~GD 102 (137)
.|||+||....+
T Consensus 103 t~TP~Ew~~~~~ 114 (123)
T 1v60_A 103 AKTPAQWRENPQ 114 (123)
T ss_dssp EECTTTTTTCCC
T ss_pred ecCHHHHHhccC
Confidence 489999987543
No 10
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=12.48 E-value=14 Score=25.02 Aligned_cols=8 Identities=13% Similarity=0.671 Sum_probs=4.8
Q ss_pred ccCCCCCC
Q 032633 92 YNENDWSP 99 (137)
Q Consensus 92 Y~p~eWs~ 99 (137)
|||+||..
T Consensus 74 ~Tp~Ew~~ 81 (82)
T 3tr3_A 74 YTPDEYER 81 (82)
T ss_dssp ECHHHHHC
T ss_pred CCHHHHhc
Confidence 56666643
Done!