Query 032633
Match_columns 137
No_of_seqs 53 out of 55
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 05:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032633.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032633hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dlja3 c.26.3.1 (A:295-402) U 29.0 4.3 0.00031 26.1 -0.6 41 55-96 22-62 (108)
2 d1d5ra1 b.7.1.1 (A:188-351) Pt 18.0 62 0.0045 21.4 3.8 40 13-52 2-45 (141)
3 d2hqsa1 b.68.4.1 (A:163-431) T 14.5 13 0.00097 23.7 -0.5 9 96-104 45-53 (269)
4 d2axtz1 f.17.5.1 (Z:1-62) Phot 13.5 17 0.0012 22.9 -0.2 23 93-118 29-51 (62)
5 d2i53a1 a.74.1.1 (A:14-157) Cy 11.0 33 0.0024 21.9 0.6 17 83-99 2-20 (144)
6 d1uala_ c.116.1.4 (A:) tRNA(m1 9.9 40 0.0029 25.5 0.8 18 43-60 49-66 (252)
7 d1oy5a_ c.116.1.4 (A:) tRNA(m1 9.4 44 0.0032 25.0 0.9 15 45-59 49-63 (232)
8 d2i7na1 c.55.1.14 (A:236-381) 8.1 44 0.0032 22.8 0.4 19 68-86 102-124 (146)
9 d2vzsa1 b.1.4.1 (A:226-335) Ex 7.9 60 0.0043 19.7 0.9 12 90-101 69-80 (110)
10 d2axth1 f.23.33.1 (H:2-65) Pho 7.8 70 0.0051 20.1 1.2 38 99-136 16-54 (64)
No 1
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}
Probab=29.03 E-value=4.3 Score=26.06 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=33.5
Q ss_pred CcccCccccCCCCCccCCcceeeehhcccCCCCccccccCCC
Q 032633 55 GMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYSPIYNEND 96 (137)
Q Consensus 55 ~m~~k~~vDa~gRk~kgkGvYqfv~KyGANVDgYSPIY~p~e 96 (137)
|+.+|.++|-- |....--+++.-.++|++|.-|=|..++.+
T Consensus 22 Gl~fK~n~dD~-R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~ 62 (108)
T d1dlja3 22 RLIMKSNSDNF-RESAIKDVIDILKSKDIKIIIYEPMLNKLE 62 (108)
T ss_dssp CCCSSTTCSCC-TTCHHHHHHHHHHTSSCEEEEECTTCSCCC
T ss_pred EEEECCCCcch-hhhhHHHHHHHHhccccceeeecCCcChhH
Confidence 67899999864 666667788888999999999999887544
No 2
>d1d5ra1 b.7.1.1 (A:188-351) Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.99 E-value=62 Score=21.45 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=29.3
Q ss_pred cCCccccccccccCCCCCC----cceeEEEEccceeeecccccc
Q 032633 13 KPAPFTVEKSAARGLPSLA----KTSFKIVAKGGKIKTDKPYGV 52 (137)
Q Consensus 13 kps~f~~~~~~~rglp~l~----R~s~~v~as~~Kikt~kp~G~ 52 (137)
+|.+..+..-.++++|... |+-|+|...+.||-|.+++..
T Consensus 2 ~P~~L~L~~I~l~~vP~f~~ggCrP~~~I~~~~~~v~ts~~~~~ 45 (141)
T d1d5ra1 2 RPVALLFHKMMFETIPMFSGGTCNPQFVVCQLKVKIYSSNSGPT 45 (141)
T ss_dssp CCCEEEEEEEEESSCCCSBTTBCCEEEEEEETTEEEEECCSSCS
T ss_pred CCEeEEEEEEEEECCCccCCCeeEEEEEEEcCCeEEEecCcEeE
Confidence 5666666666777888774 577888877779999887654
No 3
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=14.50 E-value=13 Score=23.71 Aligned_cols=9 Identities=44% Similarity=1.095 Sum_probs=6.8
Q ss_pred CCCCCCCee
Q 032633 96 DWSPSGDVY 104 (137)
Q Consensus 96 eWs~~GD~Y 104 (137)
.|||+|..-
T Consensus 45 ~wSPDGk~I 53 (269)
T d2hqsa1 45 AWSPDGSKL 53 (269)
T ss_dssp EECTTSSEE
T ss_pred EECCCCCEE
Confidence 588888764
No 4
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.47 E-value=17 Score=22.89 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=14.0
Q ss_pred cCCCCCCCCCeeccChhHHHHHHHHH
Q 032633 93 NENDWSPSGDVYTGGATGLAIWAVTL 118 (137)
Q Consensus 93 ~p~eWs~~GD~Y~gG~~gL~~WA~tl 118 (137)
+||+|+++-..--. |..+|.+++
T Consensus 29 SP~gW~~sK~lvfs---G~~~W~~LV 51 (62)
T d2axtz1 29 SPQDWDRSKQLIFL---GSGLWIALV 51 (62)
T ss_dssp CCTTTTHHHHHHHH---HHHHHHHHH
T ss_pred CCCcccccCceEEE---chhHHHHHH
Confidence 68999987443222 356776553
No 5
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.98 E-value=33 Score=21.93 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=14.4
Q ss_pred cCCCCccc--cccCCCCCC
Q 032633 83 ANVDGYSP--IYNENDWSP 99 (137)
Q Consensus 83 ANVDgYSP--IY~p~eWs~ 99 (137)
||||-+-| +++++||..
T Consensus 2 ~~~~~~~~~w~fs~~~l~~ 20 (144)
T d2i53a1 2 ANLDHTKPCWYWDKKDLAH 20 (144)
T ss_dssp CSCSSCSSSCCCCGGGGGG
T ss_pred CccccCCCCCCcCHHHHHh
Confidence 78999988 889999864
No 6
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=9.90 E-value=40 Score=25.54 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=14.0
Q ss_pred eeeeccccccCCCcccCc
Q 032633 43 KIKTDKPYGVNGGMDLRE 60 (137)
Q Consensus 43 Kikt~kp~G~~g~m~~k~ 60 (137)
|---|+|||.+.||-+|-
T Consensus 49 r~VDD~PyGGGpGMVmk~ 66 (252)
T d1uala_ 49 KTVDDRPYGGGPGMLMMV 66 (252)
T ss_dssp CCCEECCTTCCSCCEECH
T ss_pred cCcCCCcCCCCCcceeec
Confidence 433488999999998764
No 7
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]}
Probab=9.41 E-value=44 Score=25.01 Aligned_cols=15 Identities=47% Similarity=0.669 Sum_probs=12.4
Q ss_pred eeccccccCCCcccC
Q 032633 45 KTDKPYGVNGGMDLR 59 (137)
Q Consensus 45 kt~kp~G~~g~m~~k 59 (137)
--|+|||.+-||-+|
T Consensus 49 VDD~PyGGGpGMVm~ 63 (232)
T d1oy5a_ 49 VDDVPYGGLPGMVLK 63 (232)
T ss_dssp CEECBSSCCSSCEEC
T ss_pred cCccccCCCCceEEe
Confidence 447899999999765
No 8
>d2i7na1 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.14 E-value=44 Score=22.77 Aligned_cols=19 Identities=21% Similarity=0.419 Sum_probs=11.6
Q ss_pred CccCCcceeeeh----hcccCCC
Q 032633 68 KAKGKGVYQFVD----KYGANVD 86 (137)
Q Consensus 68 k~kgkGvYqfv~----KyGANVD 86 (137)
+.+|.|-|+|.+ ++|.+||
T Consensus 102 ~ATGGGA~Kf~~~~~~~Lgv~v~ 124 (146)
T d2i7na1 102 CATGGGAFKFEEDFRMIADLQLH 124 (146)
T ss_dssp CEESTTTTGGGTTC-------CC
T ss_pred EEeCccHHHHHHHHHHHcCCceE
Confidence 568999999987 6777665
No 9
>d2vzsa1 b.1.4.1 (A:226-335) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=7.87 E-value=60 Score=19.69 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=10.4
Q ss_pred ccccCCCCCCCC
Q 032633 90 PIYNENDWSPSG 101 (137)
Q Consensus 90 PIY~p~eWs~~G 101 (137)
+|=+|+-|+|.|
T Consensus 69 ~i~~p~LW~P~~ 80 (110)
T d2vzsa1 69 GLDRPNVWWPAG 80 (110)
T ss_dssp EEESCCCCCCTT
T ss_pred EeCCCceeCCCC
Confidence 788999999875
No 10
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.81 E-value=70 Score=20.07 Aligned_cols=38 Identities=26% Similarity=0.250 Sum_probs=23.0
Q ss_pred CCCCeecc-ChhHHHHHHHHHHHHhhhceeeeeeccccc
Q 032633 99 PSGDVYTG-GATGLAIWAVTLAGLLAGGALLVYNTSALA 136 (137)
Q Consensus 99 ~~GD~Y~g-G~~gL~~WA~tl~glL~~Gallvy~TSaLa 136 (137)
+-|.+--| |||-|.--+..+..+...=.|=|||.|-|-
T Consensus 16 eyGKVaPGWGTTplMgv~m~Lf~vfl~iiLeiYNss~ll 54 (64)
T d2axth1 16 EYGKVAPGWGTTPLMAVFMGLFLVFLLIILEIYNSTLIL 54 (64)
T ss_dssp CSSCCCSTTTTHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred ccCcccCCcCccHHHHHHHHHHHHHHHHHHHHhccceee
Confidence 33444333 777777555555555555567789988763
Done!