BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>032634
MGKSIASTVTTLRDLARIVSSSSPERLQRVRPRHSKPPPTSVVSARSETKARPIVKKPKM
NINWDTQQQQRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKR
GMLGLRELPQVDLLPGN

High Scoring Gene Products

Symbol, full name Information P value
AT5G05360 protein from Arabidopsis thaliana 1.3e-15
AT2G38450 protein from Arabidopsis thaliana 1.0e-13

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  032634
        (137 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2153559 - symbol:AT5G05360 species:3702 "Arabi...   196  1.3e-15   1
TAIR|locus:2057227 - symbol:AT2G38450 species:3702 "Arabi...   178  1.0e-13   1


>TAIR|locus:2153559 [details] [associations]
            symbol:AT5G05360 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR011990 EMBL:CP002688
            Gene3D:1.25.40.10 IPI:IPI00541046 RefSeq:NP_196155.2
            UniGene:At.43299 ProteinModelPortal:F4JZA9 SMR:F4JZA9 PRIDE:F4JZA9
            EnsemblPlants:AT5G05360.1 GeneID:830418 KEGG:ath:AT5G05360
            OMA:RTRSSAW Uniprot:F4JZA9
        Length = 163

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 35/51 (68%), Positives = 44/51 (86%)

Query:    71 RVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRG 121
             RVPL+QVV DCV+RWFQDTL+EAK+GD  M+VLVGQMY SGYG+ + + +G
Sbjct:    77 RVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKG 127


>TAIR|locus:2057227 [details] [associations]
            symbol:AT2G38450 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR011990 EMBL:CP002685
            Gene3D:1.25.40.10 InterPro:IPR006597 Pfam:PF08238 SMART:SM00671
            IPI:IPI00528292 RefSeq:NP_565889.2 UniGene:At.37292
            ProteinModelPortal:F4ISY9 SMR:F4ISY9 PRIDE:F4ISY9
            EnsemblPlants:AT2G38450.1 GeneID:818426 KEGG:ath:AT2G38450
            OMA:KAGNITM Uniprot:F4ISY9
        Length = 138

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/60 (56%), Positives = 45/60 (75%)

Query:    72 VPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131
             VPLS VVSDC +RWF+DTL EAK G+  M+VL+GQMY SGYGV +  ++G L + +  +V
Sbjct:    55 VPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWITKASRV 114


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      137       137   0.00091  102 3  11 22  0.45    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.54u 0.10s 17.64t   Elapsed:  00:00:04
  Total cpu time:  17.54u 0.10s 17.64t   Elapsed:  00:00:04
  Start:  Thu May  9 19:01:14 2013   End:  Thu May  9 19:01:18 2013

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