BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032634
         (137 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
          Length = 347

 Score = 28.9 bits (63), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 32  PRHSKPPPTSVVSARSETKARPIVKKPKMNINWDTQQQQRVPLSQVVSDCVQRWFQDTL- 90
           PR S  P  +++  R  T   PI+K        D Q  Q +   +V+++ V      T+ 
Sbjct: 16  PRGSHMPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIH-EKVLNEAVGALMYHTIT 74

Query: 91  --REAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGL 125
             RE     KA+ ++V     SG+   ++K  G LG+
Sbjct: 75  LTREDLEKFKALRIIV--RIGSGFDNIDIKSAGDLGI 109


>pdb|3BIO|A Chain A, Crystal Structure Of Oxidoreductase (gfo/idh/moca Family
           Member) From Porphyromonas Gingivalis W83
 pdb|3BIO|B Chain B, Crystal Structure Of Oxidoreductase (gfo/idh/moca Family
           Member) From Porphyromonas Gingivalis W83
          Length = 304

 Score = 28.9 bits (63), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 103 LVGQMYLSGYGVAEMKKRGMLGLRELPQVDLLPGN 137
           L GQ+ +     A  ++ G   L+E+P +DLLPG+
Sbjct: 261 LTGQVLVCAARAAXRQQPGAYTLQEIPVIDLLPGD 295


>pdb|1Z4E|A Chain A, Crystal Structure Of Transcriptional Regulator From
          Bacillus Halodurans C-125
 pdb|1Z4E|B Chain B, Crystal Structure Of Transcriptional Regulator From
          Bacillus Halodurans C-125
          Length = 153

 Score = 28.5 bits (62), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 20/37 (54%)

Query: 14 DLARIVSSSSPERLQRVRPRHSKPPPTSVVSARSETK 50
          DL ++V   + + L R R R+ KP P S V A  E K
Sbjct: 14 DLEQMVHMLADDVLGRKRERYEKPLPVSYVRAFKEIK 50


>pdb|3OBW|A Chain A, Crystal Structure Of Two Archaeal Pelotas Reveal
           Inter-Domain Structural Plasticity
          Length = 364

 Score = 25.8 bits (55), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 14/129 (10%)

Query: 14  DLARIVSSSSPERLQRVRPRHSKPPPTSVVSARSETKARPIVKKPKMNINWDTQQQQRVP 73
           +LA  V    P+ +    P   K   +  V+A        I+K  K+ I+       R  
Sbjct: 196 ELAEYVKQYDPDAILLAGPGFFKEEVSKKVNA--------ILKNKKIYID-SVSSATRAG 246

Query: 74  LSQVVS-DCVQRWFQD--TLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130
           L +V+  D + +   D      AK  +KAME+L  Q  L  YG+ ++K    +G  E   
Sbjct: 247 LHEVLKRDIIDKIMTDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAIEMGAVETVL 306

Query: 131 V--DLLPGN 137
           V  DLL  +
Sbjct: 307 VIEDLLSSD 315


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.129    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,767,580
Number of Sequences: 62578
Number of extensions: 128526
Number of successful extensions: 259
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 6
length of query: 137
length of database: 14,973,337
effective HSP length: 89
effective length of query: 48
effective length of database: 9,403,895
effective search space: 451386960
effective search space used: 451386960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)