BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032634
         (137 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5GTI3|RNC_WOLTR Ribonuclease 3 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS)
           GN=rnc PE=3 SV=1
          Length = 243

 Score = 31.6 bits (70), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 11/53 (20%)

Query: 91  REAKNGDKAMEVLVGQMYLSGYGVAEMKK----------RGMLGLRELPQVDL 133
           R  KN + A+E L+G +Y+ G G A +KK          +GML L + P+  L
Sbjct: 123 RNLKNLENALEALIGAIYIDG-GFANVKKFVTKHWEERAKGMLSLPQDPKTSL 174


>sp|Q9WYZ2|HSLU_THEMA ATP-dependent protease ATPase subunit HslU OS=Thermotoga maritima
           (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
           GN=hslU PE=1 SV=1
          Length = 463

 Score = 30.0 bits (66), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 1   MGKSIASTVTTLRDLARI-VSSSSPERLQRVRPRHSKPPPTSVVSARS-ETKARPIVKKP 58
           +GK++ S +   RDL  I V+    E+++ V  +  +     ++ A   E+KA P+V  P
Sbjct: 95  VGKNVDSMI---RDLVEISVNMVKQEKIKEVERQAEELVEERILDALVPESKAMPVVTNP 151

Query: 59  KMNINWDTQQQQRVP 73
            +N+    QQQQ  P
Sbjct: 152 FINLITGGQQQQYTP 166


>sp|A5IJQ2|HSLU_THEP1 ATP-dependent protease ATPase subunit HslU OS=Thermotoga petrophila
           (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=hslU PE=3
           SV=1
          Length = 463

 Score = 29.6 bits (65), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 1   MGKSIASTVTTLRDLARI-VSSSSPERLQRVRPRHSKPPPTSVVSARS-ETKARPIVKKP 58
           +GK++ S +   RDL  I V+    E+++ V  +  +     ++ A   E+KA P+V  P
Sbjct: 95  VGKNVDSMI---RDLVEISVNMVKQEKIKEVERQAEELVEERILDALVPESKAVPVVTNP 151

Query: 59  KMNINWDTQQQQRVP 73
            +N+    QQQQ  P
Sbjct: 152 FINLITGGQQQQYTP 166


>sp|B1L8X3|HSLU_THESQ ATP-dependent protease ATPase subunit HslU OS=Thermotoga sp.
           (strain RQ2) GN=hslU PE=3 SV=1
          Length = 463

 Score = 29.6 bits (65), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 1   MGKSIASTVTTLRDLARI-VSSSSPERLQRVRPRHSKPPPTSVVSARS-ETKARPIVKKP 58
           +GK++ S +   RDL  I V+    E+++ V  +  +     ++ A   E+KA P+V  P
Sbjct: 95  VGKNVDSMI---RDLVEISVNMVKQEKIKEVERQAEELVEERILDALVPESKAVPVVTNP 151

Query: 59  KMNINWDTQQQQRVP 73
            +N+    QQQQ  P
Sbjct: 152 FINLITGGQQQQYTP 166


>sp|Q29L39|POE_DROPS Protein purity of essence OS=Drosophila pseudoobscura pseudoobscura
           GN=poe PE=3 SV=1
          Length = 5381

 Score = 29.3 bits (64), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 72  VPLSQVVSDCVQRWFQ---DTLREAKNGDKAMEVLVGQMYLSGYGVAEMK 118
           VPLS+ ++DC ++      +  +EA   D  +++ VG   LS Y +  M+
Sbjct: 202 VPLSEEITDCTEQLLAANVEVFQEANGVDTLLDICVGLPILSRYRMKYME 251


>sp|A8AB20|DNLI_IGNH4 DNA ligase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 /
           JCM 14125) GN=lig PE=3 SV=1
          Length = 594

 Score = 29.3 bits (64), Expect = 8.3,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 15  LARIVSSSSPERLQRVRPRHSKPPPTSVVSARSETKA--RPIVKKPKMNINWDTQQQQ-- 70
           +A+I  +  PE L+RVRP+   P    +    ++ K   + +  K      +D ++ Q  
Sbjct: 208 VAKIAVTEGPEALKRVRPKPGVPVRPMLAERLNDPKEILKKLGGKGLAEYKYDGERAQIH 267

Query: 71  RVPLSQVVS-----DCVQRWFQDTLREAKNGDKAMEVLV 104
            +P  +VV      + + R + D ++ AK+G KA E +V
Sbjct: 268 LLPDGKVVIFSRRLENITRSYPDVVQYAKSGLKAKEAIV 306


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.129    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,266,697
Number of Sequences: 539616
Number of extensions: 1794188
Number of successful extensions: 5738
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5728
Number of HSP's gapped (non-prelim): 27
length of query: 137
length of database: 191,569,459
effective HSP length: 102
effective length of query: 35
effective length of database: 136,528,627
effective search space: 4778501945
effective search space used: 4778501945
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)