Query 032634
Match_columns 137
No_of_seqs 119 out of 362
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 03:58:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00671 SEL1 Sel1-like repe 99.2 1.7E-11 3.8E-16 70.3 3.9 36 98-133 1-36 (36)
2 PF08238 Sel1: Sel1 repeat; I 99.1 5.7E-11 1.2E-15 69.4 3.9 36 98-133 1-39 (39)
3 COG0790 FOG: TPR repeat, SEL1 99.1 9E-11 2E-15 93.1 6.1 54 80-136 94-147 (292)
4 COG0790 FOG: TPR repeat, SEL1 99.1 1.7E-10 3.7E-15 91.5 6.4 50 81-133 173-222 (292)
5 KOG1550 Extracellular protein 98.5 1.3E-07 2.9E-12 84.3 6.0 52 81-135 346-397 (552)
6 KOG1550 Extracellular protein 98.3 8.9E-07 1.9E-11 79.1 6.0 48 80-130 229-277 (552)
7 KOG4014 Uncharacterized conser 97.5 0.00037 7.9E-09 58.3 6.5 60 70-130 173-232 (248)
8 KOG4014 Uncharacterized conser 96.1 0.01 2.2E-07 49.9 4.9 51 81-134 130-200 (248)
9 PF07719 TPR_2: Tetratricopept 93.2 0.17 3.7E-06 27.8 3.5 30 98-131 1-30 (34)
10 PF13424 TPR_12: Tetratricopep 92.4 0.33 7.1E-06 31.3 4.4 47 80-130 22-74 (78)
11 PF13432 TPR_16: Tetratricopep 91.3 0.61 1.3E-05 29.1 4.7 45 80-131 14-60 (65)
12 PF13414 TPR_11: TPR repeat; P 91.3 0.66 1.4E-05 29.0 4.9 48 80-131 20-67 (69)
13 PF00515 TPR_1: Tetratricopept 89.1 0.79 1.7E-05 25.4 3.5 30 98-131 1-30 (34)
14 PF13374 TPR_10: Tetratricopep 88.7 0.84 1.8E-05 25.6 3.5 29 98-130 2-30 (42)
15 PF13176 TPR_7: Tetratricopept 88.6 0.75 1.6E-05 26.7 3.2 26 100-129 1-26 (36)
16 TIGR02552 LcrH_SycD type III s 84.1 3.5 7.6E-05 28.5 5.3 47 81-132 69-115 (135)
17 cd00189 TPR Tetratricopeptide 83.1 4.7 0.0001 23.5 4.9 30 98-131 34-63 (100)
18 PF13281 DUF4071: Domain of un 82.9 2.9 6.3E-05 37.2 5.5 53 80-132 199-256 (374)
19 smart00028 TPR Tetratricopepti 82.3 2.2 4.8E-05 20.6 2.8 29 99-131 2-30 (34)
20 PF13174 TPR_6: Tetratricopept 81.3 2.2 4.7E-05 22.9 2.7 28 99-130 1-28 (33)
21 PF13424 TPR_12: Tetratricopep 80.6 2.7 5.9E-05 26.9 3.5 28 99-130 6-33 (78)
22 PF13181 TPR_8: Tetratricopept 79.5 3.7 8.1E-05 22.4 3.4 28 99-130 2-29 (34)
23 PF14559 TPR_19: Tetratricopep 79.3 5.4 0.00012 24.6 4.4 47 80-131 8-54 (68)
24 PRK15359 type III secretion sy 77.7 6.5 0.00014 28.9 5.1 46 81-131 76-121 (144)
25 COG1729 Uncharacterized protei 77.2 5.1 0.00011 34.2 5.0 29 98-130 178-206 (262)
26 TIGR02552 LcrH_SycD type III s 76.0 9.7 0.00021 26.3 5.4 48 80-132 34-81 (135)
27 PRK02603 photosystem I assembl 76.0 11 0.00024 28.0 6.0 48 80-131 52-101 (172)
28 PF13428 TPR_14: Tetratricopep 74.4 4.3 9.3E-05 24.2 2.8 29 99-131 2-30 (44)
29 PRK10370 formate-dependent nit 74.2 13 0.00028 29.1 6.2 49 80-133 127-175 (198)
30 PRK10803 tol-pal system protei 73.9 8.4 0.00018 32.0 5.3 47 81-131 161-209 (263)
31 PF13414 TPR_11: TPR repeat; P 73.3 5.9 0.00013 24.6 3.4 32 97-132 2-33 (69)
32 PF14938 SNAP: Soluble NSF att 73.1 14 0.00031 29.9 6.5 48 80-130 91-143 (282)
33 PRK11189 lipoprotein NlpI; Pro 68.2 17 0.00037 29.7 5.9 31 96-130 130-160 (296)
34 TIGR02795 tol_pal_ybgF tol-pal 66.7 19 0.00041 23.6 4.9 48 80-131 56-105 (119)
35 TIGR02521 type_IV_pilW type IV 66.1 27 0.00057 24.7 5.9 30 97-130 98-127 (234)
36 PF12895 Apc3: Anaphase-promot 65.4 15 0.00033 24.0 4.3 43 81-127 7-50 (84)
37 KOG3617 WD40 and TPR repeat-co 64.9 9.2 0.0002 38.7 4.3 34 92-129 961-994 (1416)
38 CHL00033 ycf3 photosystem I as 64.6 19 0.0004 26.5 5.0 48 80-131 52-101 (168)
39 PF07739 TipAS: TipAS antibiot 64.0 9.1 0.0002 26.6 3.1 57 72-129 53-114 (118)
40 PLN03088 SGT1, suppressor of 63.3 18 0.00039 30.8 5.3 47 81-132 54-100 (356)
41 TIGR02521 type_IV_pilW type IV 63.1 30 0.00066 24.4 5.7 46 81-131 153-198 (234)
42 PF13371 TPR_9: Tetratricopept 62.2 24 0.00052 22.0 4.6 47 81-132 13-59 (73)
43 PRK15359 type III secretion sy 60.8 31 0.00068 25.3 5.6 47 81-132 42-88 (144)
44 TIGR02795 tol_pal_ybgF tol-pal 59.8 40 0.00086 22.0 5.5 30 98-131 39-68 (119)
45 PRK12370 invasion protein regu 58.6 27 0.00058 31.3 5.8 46 80-132 321-368 (553)
46 PRK11189 lipoprotein NlpI; Pro 57.9 13 0.00028 30.5 3.4 32 97-132 235-266 (296)
47 PRK11788 tetratricopeptide rep 57.8 30 0.00065 28.0 5.5 47 80-131 197-243 (389)
48 PRK15363 pathogenicity island 55.2 37 0.00081 26.8 5.5 46 82-132 54-99 (157)
49 PRK02603 photosystem I assembl 54.6 38 0.00082 25.1 5.2 46 83-132 16-65 (172)
50 PF08631 SPO22: Meiosis protei 53.1 28 0.0006 28.4 4.6 52 80-131 10-65 (278)
51 PF10373 EST1_DNA_bind: Est1 D 52.7 28 0.00061 27.1 4.4 42 82-130 1-44 (278)
52 TIGR00990 3a0801s09 mitochondr 52.3 43 0.00092 30.0 6.0 30 97-130 398-427 (615)
53 PRK12370 invasion protein regu 52.2 38 0.00083 30.3 5.7 45 80-128 423-467 (553)
54 PF11207 DUF2989: Protein of u 50.4 28 0.0006 28.8 4.2 47 80-131 123-169 (203)
55 KOG1125 TPR repeat-containing 49.9 32 0.0007 32.6 5.0 42 82-130 413-458 (579)
56 KOG1155 Anaphase-promoting com 49.7 30 0.00065 32.6 4.7 34 96-133 430-463 (559)
57 PF13431 TPR_17: Tetratricopep 48.9 17 0.00036 21.1 2.0 28 91-122 4-33 (34)
58 PLN03098 LPA1 LOW PSII ACCUMUL 45.2 26 0.00056 32.2 3.6 46 80-132 92-142 (453)
59 PLN03088 SGT1, suppressor of 44.3 69 0.0015 27.3 5.8 47 81-132 20-66 (356)
60 PF09986 DUF2225: Uncharacteri 43.6 81 0.0017 25.5 5.9 50 80-133 142-196 (214)
61 TIGR00990 3a0801s09 mitochondr 43.1 67 0.0015 28.8 5.8 44 81-131 312-360 (615)
62 TIGR02917 PEP_TPR_lipo putativ 42.7 85 0.0018 27.2 6.1 49 80-133 39-87 (899)
63 PF12645 HTH_16: Helix-turn-he 42.6 33 0.00071 23.1 3.0 21 89-109 3-23 (65)
64 PRK10370 formate-dependent nit 42.2 43 0.00093 26.1 4.0 33 96-132 71-103 (198)
65 COG2956 Predicted N-acetylgluc 42.1 50 0.0011 30.0 4.8 44 89-132 164-210 (389)
66 KOG1130 Predicted G-alpha GTPa 41.4 44 0.00096 31.6 4.5 42 82-127 254-300 (639)
67 KOG2003 TPR repeat-containing 40.8 67 0.0014 30.9 5.6 45 80-129 541-585 (840)
68 PLN03098 LPA1 LOW PSII ACCUMUL 40.3 71 0.0015 29.5 5.6 37 92-132 69-105 (453)
69 PF11286 DUF3087: Protein of u 40.2 67 0.0014 25.9 4.8 30 80-109 90-119 (165)
70 PRK11447 cellulose synthase su 40.0 70 0.0015 31.4 5.8 47 81-132 369-415 (1157)
71 PRK11447 cellulose synthase su 39.9 74 0.0016 31.2 5.9 48 80-132 286-333 (1157)
72 PRK15363 pathogenicity island 38.2 88 0.0019 24.8 5.2 43 81-130 87-131 (157)
73 PRK11788 tetratricopeptide rep 35.4 95 0.0021 25.1 5.1 33 96-132 139-171 (389)
74 PRK10153 DNA-binding transcrip 34.0 90 0.0019 28.5 5.2 46 81-132 438-483 (517)
75 TIGR02917 PEP_TPR_lipo putativ 33.9 1.3E+02 0.0028 26.1 5.9 32 96-131 191-222 (899)
76 PF04212 MIT: MIT (microtubule 33.6 1.2E+02 0.0026 19.6 4.6 13 117-129 20-32 (69)
77 TIGR03302 OM_YfiO outer membra 33.3 1.3E+02 0.0027 22.8 5.3 48 80-132 50-100 (235)
78 PF07721 TPR_4: Tetratricopept 32.5 51 0.0011 17.8 2.2 24 99-126 2-25 (26)
79 TIGR00756 PPR pentatricopeptid 32.4 30 0.00066 18.0 1.3 26 111-136 9-34 (35)
80 COG3063 PilF Tfp pilus assembl 32.0 1E+02 0.0022 26.6 4.9 47 80-131 86-132 (250)
81 KOG0495 HAT repeat protein [RN 31.9 68 0.0015 31.8 4.2 44 87-135 807-850 (913)
82 KOG2002 TPR-containing nuclear 31.7 39 0.00084 34.1 2.6 30 99-132 308-337 (1018)
83 PF13429 TPR_15: Tetratricopep 30.6 61 0.0013 25.6 3.2 14 117-130 229-242 (280)
84 PRK15174 Vi polysaccharide exp 27.8 1.6E+02 0.0035 27.2 5.8 49 81-131 230-279 (656)
85 KOG1173 Anaphase-promoting com 26.9 1E+02 0.0023 29.5 4.5 45 80-128 431-481 (611)
86 TIGR00540 hemY_coli hemY prote 26.4 1.4E+02 0.003 25.5 4.8 30 94-127 329-360 (409)
87 KOG2002 TPR-containing nuclear 26.2 82 0.0018 31.9 3.8 30 95-128 267-296 (1018)
88 KOG1126 DNA-binding cell divis 25.6 55 0.0012 31.5 2.5 34 95-132 418-451 (638)
89 PRK10866 outer membrane biogen 25.4 2.1E+02 0.0044 23.2 5.5 47 81-131 50-98 (243)
90 KOG1155 Anaphase-promoting com 25.3 1.7E+02 0.0037 27.9 5.4 30 97-130 397-426 (559)
91 PHA02681 ORF089 virion membran 24.5 64 0.0014 23.9 2.1 37 10-47 55-91 (92)
92 COG5010 TadD Flp pilus assembl 24.5 1.9E+02 0.004 24.9 5.2 49 80-133 151-199 (257)
93 cd05804 StaR_like StaR_like; a 23.9 1.9E+02 0.0042 23.0 5.0 46 81-131 132-177 (355)
94 PF13041 PPR_2: PPR repeat fam 23.7 84 0.0018 18.7 2.3 27 110-136 11-37 (50)
95 TIGR00540 hemY_coli hemY prote 23.5 2.5E+02 0.0055 23.9 5.9 48 80-131 352-399 (409)
96 KOG3060 Uncharacterized conser 23.1 1E+02 0.0022 27.1 3.4 29 95-127 151-179 (289)
97 PRK09782 bacteriophage N4 rece 23.0 1.9E+02 0.0042 28.8 5.6 31 96-130 675-705 (987)
98 PRK09782 bacteriophage N4 rece 22.0 1.9E+02 0.004 28.9 5.4 45 81-131 594-638 (987)
99 cd09239 BRO1_HD-PTP_like Prote 21.0 1.4E+02 0.003 26.1 3.9 32 99-130 115-151 (361)
100 PRK15174 Vi polysaccharide exp 20.2 2.9E+02 0.0063 25.6 6.0 45 82-131 269-313 (656)
No 1
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=99.21 E-value=1.7e-11 Score=70.29 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCC
Q 032634 98 KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDL 133 (137)
Q Consensus 98 ~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~ 133 (137)
+.||+.||.||..|.|+++|..+|++||++||++|+
T Consensus 1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~ 36 (36)
T smart00671 1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN 36 (36)
T ss_pred CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence 369999999999999999999999999999999985
No 2
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=99.14 E-value=5.7e-11 Score=69.36 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=33.5
Q ss_pred HHHHHHHH--HHhhcCC-CccccHHHHHHHHHHhhcCCC
Q 032634 98 KAMEVLVG--QMYLSGY-GVAEMKKRGMLGLRELPQVDL 133 (137)
Q Consensus 98 ~~AQ~~LG--~MY~~G~-GV~qD~~KA~~Wf~KAAeqg~ 133 (137)
+.||++|| .||.+|. |+++|..+|++||++||++|+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~ 39 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH 39 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence 57999999 9999999 899999999999999999985
No 3
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.13 E-value=9e-11 Score=93.09 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCCCC
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLLPG 136 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~~~ 136 (137)
..+..||. .+|+.|++.+|++||.||..|.||++|+.+|.+||++||++|+.++
T Consensus 94 ~~A~~~~~---~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a 147 (292)
T COG0790 94 TKAADWYR---CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA 147 (292)
T ss_pred HHHHHHHH---HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH
Confidence 45889999 7999999999999999999999999999999999999999999864
No 4
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=99.10 E-value=1.7e-10 Score=91.53 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDL 133 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~ 133 (137)
.+..||. ++|+.|++.||++||.||.+|.||++|..+|++||.+||++|+
T Consensus 173 ~A~~~~~---~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 173 KALYLYR---KAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hHHHHHH---HHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 6889999 7999999999999999999999999999999999999999997
No 5
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.53 E-value=1.3e-07 Score=84.32 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCCC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLLP 135 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~~ 135 (137)
.|.+||. .||+.|++.|+++|+.||..|.||++|..+|+.||.+||+.|...
T Consensus 346 ~A~~yy~---~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~ 397 (552)
T KOG1550|consen 346 RAFEYYS---LAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPS 397 (552)
T ss_pred HHHHHHH---HHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChh
Confidence 5889998 799999999999999999999999999999999999999999643
No 6
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.33 E-value=8.9e-07 Score=79.14 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-CCccccHHHHHHHHHHhhc
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSG-YGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G-~GV~qD~~KA~~Wf~KAAe 130 (137)
..++.||+ .+|+.|+..||+.+|.||+.| +||++|.++|++||++||+
T Consensus 229 ~~a~~~~~---~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 229 SEAFKYYR---EAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE 277 (552)
T ss_pred hHHHHHHH---HHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence 35889999 799999999999999999999 9999999999999999998
No 7
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=97.45 E-value=0.00037 Score=58.30 Aligned_cols=60 Identities=17% Similarity=0.168 Sum_probs=47.6
Q ss_pred CCcCchhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 70 QRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 70 ~~~pl~~vv~d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
.|..|..+..| ...-|+-+.+|++.+.+.|+.|+.+||..|.||++|..+|..+-.+|-+
T Consensus 173 ~~~~~~~~~kD-Mdka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e 232 (248)
T KOG4014|consen 173 DRAELGSLSKD-MDKALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE 232 (248)
T ss_pred chhhhhhhhHh-HHHHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence 34445545443 3444555569999999999999999999999999999999998888754
No 8
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=96.11 E-value=0.01 Score=49.86 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----------CCcc----------ccHHHHHHHHHHhhcCCCC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSG----------YGVA----------EMKKRGMLGLRELPQVDLL 134 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G----------~GV~----------qD~~KA~~Wf~KAAeqg~~ 134 (137)
.+.+++. ++++.+|..|+|+|..||..| .|-| +|..+|+++-.||++-|++
T Consensus 130 Ka~~y~t---raCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~ 200 (248)
T KOG4014|consen 130 KAERYMT---RACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIP 200 (248)
T ss_pred HHHHHHH---HhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCCh
Confidence 5778888 899999999999999999987 3666 9999999999999999876
No 9
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.20 E-value=0.17 Score=27.77 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 98 KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 98 ~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
+.+.+.||..|+. ..++++|+++|++|.+.
T Consensus 1 a~~~~~lg~~~~~----~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQ----LGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 4578899999984 48999999999999764
No 10
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.36 E-value=0.33 Score=31.28 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHH-cCC-----HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 80 DCVQRWFQDTLREAK-NGD-----KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 80 d~A~~WF~~~lkAAe-~GD-----~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
+.|..+|+.+++..+ .|+ +.+.++||.+|. -..|+++|+++|++|.+
T Consensus 22 ~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~----~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 22 DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY----RLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHh
Confidence 467788887777643 343 456688888887 44789999999999864
No 11
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=91.28 E-value=0.61 Score=29.05 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 80 DCVQRWFQDTLREAKN--GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~--GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
+.|...|+. +.+. +++.+.+.||.+|. ...++.+|..+|+++.+.
T Consensus 14 ~~A~~~~~~---~l~~~P~~~~a~~~lg~~~~----~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 14 DEAIAAFEQ---ALKQDPDNPEAWYLLGRILY----QQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHH---HHCCSTTHHHHHHHHHHHHH----HTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHH
Confidence 456677773 4444 48999999999999 458999999999999754
No 12
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=91.28 E-value=0.66 Score=29.03 Aligned_cols=48 Identities=8% Similarity=0.191 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
+.|...|..+++. .-.++.+.+++|.+|..= | +++.+|++.|++|.+.
T Consensus 20 ~~A~~~~~~ai~~-~p~~~~~~~~~g~~~~~~-~--~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 20 EEAIEYFEKAIEL-DPNNAEAYYNLGLAYMKL-G--KDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHH-STTHHHHHHHHHHHHHHT-T--THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHh-C--ccHHHHHHHHHHHHHc
Confidence 3577888854443 456899999999999842 1 4799999999999753
No 13
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.06 E-value=0.79 Score=25.43 Aligned_cols=30 Identities=7% Similarity=0.021 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 98 KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 98 ~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
+.+.+++|.+|. ...++.+|+..|++|.+-
T Consensus 1 a~~~~~~g~~~~----~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYF----QLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHH----HTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----HhCCchHHHHHHHHHHHH
Confidence 457889999998 558999999999999764
No 14
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.70 E-value=0.84 Score=25.60 Aligned_cols=29 Identities=10% Similarity=0.004 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 98 KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 98 ~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
+.++.+||.+|.. ..++.+|..|+++|.+
T Consensus 2 a~~~~~la~~~~~----~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRA----QGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHH----CT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----hhhcchhhHHHHHHHH
Confidence 3588999999983 4799999999999864
No 15
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.57 E-value=0.75 Score=26.72 Aligned_cols=26 Identities=8% Similarity=0.029 Sum_probs=21.3
Q ss_pred HHHHHHHHhhcCCCccccHHHHHHHHHHhh
Q 032634 100 MEVLVGQMYLSGYGVAEMKKRGMLGLRELP 129 (137)
Q Consensus 100 AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAA 129 (137)
|..+||.+|.. ..|+++|+.+|++|.
T Consensus 1 al~~Lg~~~~~----~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQ----QGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHH----CT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence 56789999994 489999999999964
No 16
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=84.11 E-value=3.5 Score=28.51 Aligned_cols=47 Identities=6% Similarity=-0.084 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
.|..+|..+++. .-.++...+++|.+|.. ..|+++|..||+++.+.+
T Consensus 69 ~A~~~~~~~~~~-~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 69 EAIDAYALAAAL-DPDDPRPYFHAAECLLA----LGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHhc-CCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhc
Confidence 455566532111 22357777888887773 367888888888776644
No 17
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=83.13 E-value=4.7 Score=23.45 Aligned_cols=30 Identities=3% Similarity=-0.040 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 98 KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 98 ~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
..+.+.+|.+|..- .++.+|..+|+++.+.
T Consensus 34 ~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 34 ADAYYNLAAAYYKL----GKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhC
Confidence 35666666666542 5566666666666554
No 18
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=82.92 E-value=2.9 Score=37.16 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----CCCccccHHHHHHHHHHhhcCC
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLS-----GYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~-----G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
+.|.+++..++...+.-+++...++|..|.. +.--.....+|+.||.||.+..
T Consensus 199 e~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 199 EKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 4577888876777788899999999999975 3445566999999999998754
No 19
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.34 E-value=2.2 Score=20.61 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 99 AMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 99 ~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
.+.+++|.+|.. ..++++|..||+++.+.
T Consensus 2 ~~~~~~a~~~~~----~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLK----LGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHH----HhhHHHHHHHHHHHHcc
Confidence 356788888874 47899999999998764
No 20
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=81.30 E-value=2.2 Score=22.93 Aligned_cols=28 Identities=7% Similarity=0.008 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 99 AMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 99 ~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
+|++++|.+|.. ..|..+|...|++..+
T Consensus 1 ~a~~~~a~~~~~----~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 1 DALYRLARCYYK----LGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHH----HCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence 488999999996 3799999999998764
No 21
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=80.64 E-value=2.7 Score=26.88 Aligned_cols=28 Identities=4% Similarity=-0.121 Sum_probs=23.2
Q ss_pred HHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 99 AMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 99 ~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
.++++||.+|. -..++++|+.+|++|.+
T Consensus 6 ~~~~~la~~~~----~~~~~~~A~~~~~~al~ 33 (78)
T PF13424_consen 6 NAYNNLARVYR----ELGRYDEALDYYEKALD 33 (78)
T ss_dssp HHHHHHHHHHH----HTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HcCCHHHHHHHHHHHHH
Confidence 47889999998 45799999999999975
No 22
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=79.50 E-value=3.7 Score=22.43 Aligned_cols=28 Identities=7% Similarity=0.037 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 99 AMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 99 ~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
.+.+.+|..|.. ..|+++|++.|++|.+
T Consensus 2 ~~~~~lg~~y~~----~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQ----LGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHH----TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence 477889999984 6899999999999865
No 23
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=79.26 E-value=5.4 Score=24.64 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
+.|...|+.++ .-.-+|..+.+.||.+|..- .++++|..+++++...
T Consensus 8 ~~A~~~~~~~l-~~~p~~~~~~~~la~~~~~~----g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 8 DEAIELLEKAL-QRNPDNPEARLLLAQCYLKQ----GQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHH-HHTTTSHHHHHHHHHHHHHT----T-HHHHHHHHHCCHGG
T ss_pred HHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Confidence 46778888422 22346999999999999965 7899999999887654
No 24
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=77.71 E-value=6.5 Score=28.95 Aligned_cols=46 Identities=4% Similarity=-0.043 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
.|..+|..++. ..-+|+.+.++||.+|.. ..++++|+..|.+|.+.
T Consensus 76 ~A~~~y~~Al~-l~p~~~~a~~~lg~~l~~----~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 76 TAINFYGHALM-LDASHPEPVYQTGVCLKM----MGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHh-cCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 46677774332 234788888888888774 36778888888887653
No 25
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.22 E-value=5.1 Score=34.16 Aligned_cols=29 Identities=3% Similarity=-0.042 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 98 KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 98 ~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
++|+||||..|+ ...|++.|.+.|..++.
T Consensus 178 ~nA~yWLGe~~y----~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 178 PNAYYWLGESLY----AQGDYEDAAYIFARVVK 206 (262)
T ss_pred chhHHHHHHHHH----hcccchHHHHHHHHHHH
Confidence 789999999999 56899999999988775
No 26
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=76.00 E-value=9.7 Score=26.26 Aligned_cols=48 Identities=8% Similarity=-0.092 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
+.|..+|+.++. ..-.++.+.+++|.+|..- .++.+|..+|+++.+.+
T Consensus 34 ~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 34 DEALKLFQLLAA-YDPYNSRYWLGLAACCQML----KEYEEAIDAYALAAALD 81 (135)
T ss_pred HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcC
Confidence 356678874222 2345889999999999743 78899999999987654
No 27
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=75.96 E-value=11 Score=27.95 Aligned_cols=48 Identities=8% Similarity=0.133 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 80 DCVQRWFQDTLREAKNG--DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~G--D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
+.|..+|+.+++..... ...+.++||.+|..- .++++|+.+|++|.+.
T Consensus 52 ~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 52 AEALENYEEALKLEEDPNDRSYILYNMGIIYASN----GEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Confidence 35778888543332222 257899999999853 6889999999999874
No 28
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=74.44 E-value=4.3 Score=24.18 Aligned_cols=29 Identities=14% Similarity=0.036 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 99 AMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 99 ~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
.+.+.||..|.. .-++++|..+|+++.+.
T Consensus 2 ~~~~~la~~~~~----~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRR----LGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 577888888884 46899999999999875
No 29
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=74.23 E-value=13 Score=29.11 Aligned_cols=49 Identities=4% Similarity=0.014 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCC
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDL 133 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~ 133 (137)
+.+...|+.++ ...-.|+.+.++||..|+. ..|+++|+.+|+++.+..-
T Consensus 127 ~~A~~~l~~al-~~dP~~~~al~~LA~~~~~----~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 127 PQTREMIDKAL-ALDANEVTALMLLASDAFM----QADYAQAIELWQKVLDLNS 175 (198)
T ss_pred HHHHHHHHHHH-HhCCCChhHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Confidence 45556665311 1223477777777777773 4678888888888766543
No 30
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=73.91 E-value=8.4 Score=32.00 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHcCC--HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 81 CVQRWFQDTLREAKNGD--KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD--~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
.|..-|+.+++.--... +.|+++||.+|+. ..|+.+|+..|++..+.
T Consensus 161 ~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~----~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 161 DAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN----KGKKDDAAYYFASVVKN 209 (263)
T ss_pred HHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 45555664333322222 6899999999994 68999999999998754
No 31
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=73.26 E-value=5.9 Score=24.61 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 97 DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 97 D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
++...+++|..|+. ..|+.+|+..|.+|.+.+
T Consensus 2 ~a~~~~~~g~~~~~----~~~~~~A~~~~~~ai~~~ 33 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ----QGDYEEAIEYFEKAIELD 33 (69)
T ss_dssp SHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Confidence 56778889999985 589999999999998754
No 32
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=73.10 E-value=14 Score=29.94 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHH-HHHcCC----HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 80 DCVQRWFQDTLR-EAKNGD----KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 80 d~A~~WF~~~lk-AAe~GD----~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
+.|..+|+.+.. ..+.|+ +..+..||.+|..-. .|+++|+++|++|++
T Consensus 91 ~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~---~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 91 DEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQL---GDYEKAIEYYQKAAE 143 (282)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHH
Confidence 345666665444 335576 456789999998643 589999999999986
No 33
>PRK11189 lipoprotein NlpI; Provisional
Probab=68.19 E-value=17 Score=29.74 Aligned_cols=31 Identities=13% Similarity=-0.103 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 96 GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 96 GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
.+..+.+++|.+|+.. .++++|+..|++|.+
T Consensus 130 ~~~~a~~~lg~~l~~~----g~~~eA~~~~~~al~ 160 (296)
T PRK11189 130 TYNYAYLNRGIALYYG----GRYELAQDDLLAFYQ 160 (296)
T ss_pred CCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHH
Confidence 3455555555555432 344444444444443
No 34
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=66.68 E-value=19 Score=23.61 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 80 DCVQRWFQDTLREAKNG--DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~G--D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
+.|..+|..++...-.+ .+.+.+++|.+|.. ..++.+|..+|.++.+.
T Consensus 56 ~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQE----LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHH----hCChHHHHHHHHHHHHH
Confidence 35667777433322222 26788899999874 57888899998887665
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=66.12 E-value=27 Score=24.72 Aligned_cols=30 Identities=7% Similarity=0.031 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 97 DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 97 D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
+..+.+++|.+|.. ..++.+|..+|+++.+
T Consensus 98 ~~~~~~~~~~~~~~----~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 98 NGDVLNNYGTFLCQ----QGKYEQAMQQFEQAIE 127 (234)
T ss_pred CHHHHHHHHHHHHH----cccHHHHHHHHHHHHh
Confidence 34444444444432 2345555555555543
No 36
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=65.45 E-value=15 Score=23.98 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcCCCccccHHHHHHHHHH
Q 032634 81 CVQRWFQDTLREAKNG-DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRE 127 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~G-D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~K 127 (137)
.|...|+.++...... +....++||.+|+. ..++.+|+.++++
T Consensus 7 ~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~----~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 7 NAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ----QGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH----TTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----CCCHHHHHHHHHH
Confidence 3555565433333322 34455556777774 3677777777765
No 37
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=64.91 E-value=9.2 Score=38.66 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=29.3
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhh
Q 032634 92 EAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELP 129 (137)
Q Consensus 92 AAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAA 129 (137)
|-+.||..|+|.||.||.+- -|..+|+.+|.+|-
T Consensus 961 A~esgd~AAcYhlaR~YEn~----g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 961 AEESGDKAACYHLARMYEND----GDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHhcccHHHHHHHHHHhhhh----HHHHHHHHHHHHHH
Confidence 34679999999999999974 58899999999984
No 38
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=64.65 E-value=19 Score=26.52 Aligned_cols=48 Identities=6% Similarity=-0.018 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 80 DCVQRWFQDTLREAKNG--DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~G--D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
+.|..+|..++.....- .+.+.++||.+|.. ..++++|+..|++|.+-
T Consensus 52 ~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~----~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 52 AEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS----NGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHhccccchhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 46778888433222111 24589999999985 47889999999998754
No 39
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=63.99 E-value=9.1 Score=26.60 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=33.9
Q ss_pred cCchhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHH-----HHHHHHHHhh
Q 032634 72 VPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKK-----RGMLGLRELP 129 (137)
Q Consensus 72 ~pl~~vv~d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~-----KA~~Wf~KAA 129 (137)
-|=..-|...+.+|+..+. ..-.||......|+.||..--.....+. ...+|..+|.
T Consensus 53 ~p~s~evq~l~~~~~~~~~-~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~fi~~Ai 114 (118)
T PF07739_consen 53 DPDSPEVQELAERWMELIN-QFTGGDPELLRGLAQMYVEDPRFAAMYDKKFGPGLAEFIEKAI 114 (118)
T ss_dssp -TT-HHHHHHHHHHHHHHH-HSS---HHHHHHHHHHTTSTHHHHHHHG-GGSTTHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHcCHHHHhhccccCCHHHHHHHHHHH
Confidence 3555667778889998544 5555899999999999965433333222 3445555553
No 40
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=63.32 E-value=18 Score=30.80 Aligned_cols=47 Identities=6% Similarity=-0.076 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
.|...|+.+++. .-.++.++++||.+|+. ..++.+|+.+|++|.+.+
T Consensus 54 eAl~~~~~Al~l-~P~~~~a~~~lg~~~~~----lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 54 EAVADANKAIEL-DPSLAKAYLRKGTACMK----LEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHh-CcCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhC
Confidence 466667643322 33688899999998873 478899999999988754
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=63.08 E-value=30 Score=24.41 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
.+..+|..+++. ...+..+...+|.+|+. ..|+++|..+|+++.+.
T Consensus 153 ~A~~~~~~~~~~-~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 153 KAEKYLTRALQI-DPQRPESLLELAELYYL----RGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHh-CcCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence 455666632221 22456677777777773 46777777777776654
No 42
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=62.17 E-value=24 Score=21.95 Aligned_cols=47 Identities=6% Similarity=0.045 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
.+..+++.+++ ..-.|+.+.+.+|.+|.. ..++.+|++.|+++.+.+
T Consensus 13 ~A~~~~~~~l~-~~p~~~~~~~~~a~~~~~----~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 13 EALEVLERALE-LDPDDPELWLQRARCLFQ----LGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHHHHHHH-hCcccchhhHHHHHHHHH----hccHHHHHHHHHHHHHHC
Confidence 45566663222 234589999999999994 479999999999998654
No 43
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=60.85 E-value=31 Score=25.29 Aligned_cols=47 Identities=6% Similarity=-0.086 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
.|...|+.++ ...-.+..+.++||.++. -..++++|..+|++|.+.+
T Consensus 42 ~A~~~~~~al-~~~P~~~~a~~~lg~~~~----~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 42 RAVIDFSWLV-MAQPWSWRAHIALAGTWM----MLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHH-HcCCCcHHHHHHHHHHHH----HHhhHHHHHHHHHHHHhcC
Confidence 4667777321 223369999999999887 4578999999999998754
No 44
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=59.80 E-value=40 Score=22.02 Aligned_cols=30 Identities=7% Similarity=0.081 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 98 KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 98 ~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
..+.+++|.+|... .++..|+.+|+++...
T Consensus 39 ~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~ 68 (119)
T TIGR02795 39 PNAHYWLGEAYYAQ----GKYADAAKAFLAVVKK 68 (119)
T ss_pred HHHHHHHHHHHHhh----ccHHHHHHHHHHHHHH
Confidence 57999999999954 6899999999998764
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=58.62 E-value=27 Score=31.26 Aligned_cols=46 Identities=9% Similarity=-0.037 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 80 DCVQRWFQDTLREAKN--GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~--GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
+.|..+++. +.+. .|+.+...||.+|.. ..++++|..+|++|.+.+
T Consensus 321 ~~A~~~~~~---Al~ldP~~~~a~~~lg~~~~~----~g~~~~A~~~~~~Al~l~ 368 (553)
T PRK12370 321 IKAKEHAIK---ATELDHNNPQALGLLGLINTI----HSEYIVGSLLFKQANLLS 368 (553)
T ss_pred HHHHHHHHH---HHhcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence 456666663 3333 466677777766652 245666777776665543
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=57.93 E-value=13 Score=30.48 Aligned_cols=32 Identities=6% Similarity=-0.095 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 97 DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 97 D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
+..|+++||..|. -..|+.+|+.||++|.+.+
T Consensus 235 ~~ea~~~Lg~~~~----~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 235 LCETYFYLAKYYL----SLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHhC
Confidence 4579999999998 4578999999999998755
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=57.82 E-value=30 Score=28.03 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
+.|..+|..+++. ...+..+.+.||..|.. ..++++|.++|+++.+.
T Consensus 197 ~~A~~~~~~al~~-~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 197 DAARALLKKALAA-DPQCVRASILLGDLALA----QGDYAAAIEALERVEEQ 243 (389)
T ss_pred HHHHHHHHHHHhH-CcCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence 3566777743332 23467788899998885 35888999999998764
No 48
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=55.25 E-value=37 Score=26.85 Aligned_cols=46 Identities=13% Similarity=0.065 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 82 VQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 82 A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
|...|+ ++-.-..-+....++||.+|. ...++.+|++.|.+|...+
T Consensus 54 A~~~f~-~L~~~Dp~~~~y~~gLG~~~Q----~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 54 AARLFQ-LLTIYDAWSFDYWFRLGECCQ----AQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHHHHH-HHHHhCcccHHHHHHHHHHHH----HHhhHHHHHHHHHHHHhcC
Confidence 444444 122333445566666666665 4566677777776666544
No 49
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=54.64 E-value=38 Score=25.11 Aligned_cols=46 Identities=7% Similarity=-0.083 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 83 QRWFQDTLREAK----NGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 83 ~~WF~~~lkAAe----~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
.-|++.+++... .+.+.+.+++|..|.. ..|+++|+.+|++|.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 65 (172)
T PRK02603 16 TVMADLILKILPINKKAKEAFVYYRDGMSAQA----DGEYAEALENYEEALKLE 65 (172)
T ss_pred HHHHHHHHHHcccccHhhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHh
Confidence 356665433332 2677788999999984 479999999999998653
No 50
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=53.11 E-value=28 Score=28.44 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-CCC--ccc-cHHHHHHHHHHhhcC
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLS-GYG--VAE-MKKRGMLGLRELPQV 131 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~-G~G--V~q-D~~KA~~Wf~KAAeq 131 (137)
|.|..+|..+.......|+...-.|+.+|++ |.. -.. +++.|..|+++|.+-
T Consensus 10 ~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 10 DLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred HHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4566777754444547788888888887765 433 234 899999999999764
No 51
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=52.71 E-value=28 Score=27.06 Aligned_cols=42 Identities=2% Similarity=-0.044 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 82 VQRWFQDTLREAKN--GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 82 A~~WF~~~lkAAe~--GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
|.+||. +|..- ++-..++.||.++.. ..|.-.|++||.||.-
T Consensus 1 A~~~Y~---~A~~l~P~~G~p~nQLAvl~~~----~~~~l~avy~y~Rsl~ 44 (278)
T PF10373_consen 1 AERYYR---KAIRLLPSNGNPYNQLAVLASY----QGDDLDAVYYYIRSLA 44 (278)
T ss_dssp HHHHHH---HHHHH-TTBSHHHHHHHHHHHH----TT-HHHHHHHHHHHHS
T ss_pred CHHHHH---HHHHhCCCCCCcccchhhhhcc----ccchHHHHHHHHHHHh
Confidence 567887 45544 567788999999885 3788999999999864
No 52
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=52.25 E-value=43 Score=30.04 Aligned_cols=30 Identities=7% Similarity=-0.096 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 97 DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 97 D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
++.+.+++|.+|+. ..|+++|+.+|++|.+
T Consensus 398 ~~~~~~~lg~~~~~----~g~~~~A~~~~~kal~ 427 (615)
T TIGR00990 398 DPDIYYHRAQLHFI----KGEFAQAGKDYQKSID 427 (615)
T ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence 44444445544442 2345555555555443
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=52.23 E-value=38 Score=30.30 Aligned_cols=45 Identities=7% Similarity=-0.076 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHh
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLREL 128 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KA 128 (137)
+.|..||+.+++...-+++.+..+||.+|.. ..+.++|..+|.+.
T Consensus 423 eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~----~G~~~eA~~~~~~~ 467 (553)
T PRK12370 423 DDAIRLGDELRSQHLQDNPILLSMQVMFLSL----KGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHh----CCCHHHHHHHHHHh
Confidence 3455566532222223456666666666642 34556666666554
No 54
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=50.36 E-value=28 Score=28.84 Aligned_cols=47 Identities=9% Similarity=0.049 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
+.|.+-|..+....+--|++.|+.||..|. .+|.+||+..|.+|-+.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-----krD~~Kt~~ll~~~L~l 169 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-----KRDPEKTIQLLLRALEL 169 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHh
Confidence 467777774444445569999999999985 59999999999998764
No 55
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=49.89 E-value=32 Score=32.64 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHc-C---CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 82 VQRWFQDTLREAKN-G---DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 82 A~~WF~~~lkAAe~-G---D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
..+.|. .+|.+ + |++-|.-||.+|+ ..+++++|+.+|+-|..
T Consensus 413 i~~~fL---eaa~~~~~~~DpdvQ~~LGVLy~----ls~efdraiDcf~~AL~ 458 (579)
T KOG1125|consen 413 IQELFL---EAARQLPTKIDPDVQSGLGVLYN----LSGEFDRAVDCFEAALQ 458 (579)
T ss_pred HHHHHH---HHHHhCCCCCChhHHhhhHHHHh----cchHHHHHHHHHHHHHh
Confidence 345554 45554 4 8999999999999 66899999999998864
No 56
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=49.69 E-value=30 Score=32.65 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCC
Q 032634 96 GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDL 133 (137)
Q Consensus 96 GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~ 133 (137)
.|......||.+|.. --..++|+++|.+|...|.
T Consensus 430 nDsRlw~aLG~CY~k----l~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 430 NDSRLWVALGECYEK----LNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred CchHHHHHHHHHHHH----hccHHHHHHHHHHHHhccc
Confidence 455555566666532 1234555555555555443
No 57
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=48.90 E-value=17 Score=21.05 Aligned_cols=28 Identities=7% Similarity=0.120 Sum_probs=19.8
Q ss_pred HHHHc--CCHHHHHHHHHHhhcCCCccccHHHHH
Q 032634 91 REAKN--GDKAMEVLVGQMYLSGYGVAEMKKRGM 122 (137)
Q Consensus 91 kAAe~--GD~~AQ~~LG~MY~~G~GV~qD~~KA~ 122 (137)
++.+. .|+.|.++||.+|..- .|.++|+
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~----g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQ----GDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHC----cCHHhhc
Confidence 45444 6999999999999843 3555543
No 58
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=45.22 E-value=26 Score=32.23 Aligned_cols=46 Identities=11% Similarity=-0.130 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHc--CCHH---HHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 80 DCVQRWFQDTLREAKN--GDKA---MEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~--GD~~---AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
+.|..+|+. +.+. .|.. |++|||..|.. ..+.++|+.+|++|.+.+
T Consensus 92 eEAIa~f~r---ALeL~Pd~aeA~~A~yNLAcaya~----LGr~dEAla~LrrALels 142 (453)
T PLN03098 92 KDALAQFET---ALELNPNPDEAQAAYYNKACCHAY----REEGKKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHH---HHhhCCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhc
Confidence 467788884 4443 4554 49999999984 469999999999998863
No 59
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=44.26 E-value=69 Score=27.28 Aligned_cols=47 Identities=4% Similarity=0.022 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
.|...|..+++ ..-.++.+.+++|.+|.. ..++.+|+..|++|.+.+
T Consensus 20 ~Ai~~~~~Al~-~~P~~~~a~~~~a~~~~~----~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 20 LAVDLYTQAID-LDPNNAELYADRAQANIK----LGNFTEAVADANKAIELD 66 (356)
T ss_pred HHHHHHHHHHH-hCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 56677774332 233689999999999984 478999999999997754
No 60
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.60 E-value=81 Score=25.46 Aligned_cols=50 Identities=4% Similarity=0.068 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCC
Q 032634 80 DCVQRWFQDTLREAKN-----GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDL 133 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~-----GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~ 133 (137)
..|..+|.++...-.. .+...++++|.|+.. --|.++|..||.+....+.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rr----lg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRR----LGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHcCCC
Confidence 3566777743222222 124667778877763 3688899999999876544
No 61
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=43.10 E-value=67 Score=28.79 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 81 CVQRWFQDTLREAKN-----GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~-----GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
.|..+|+. +.+. .+..+.+++|.+|.. ..|+++|+.+|++|.+.
T Consensus 312 ~A~~~~~~---al~~~~~~~~~a~a~~~lg~~~~~----~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 312 EAARAFEK---ALDLGKLGEKEAIALNLRGTFKCL----KGKHLEALADLSKSIEL 360 (615)
T ss_pred HHHHHHHH---HHhcCCCChhhHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Confidence 45566663 4333 355677788888763 45778888888887654
No 62
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=42.71 E-value=85 Score=27.22 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCC
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDL 133 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~ 133 (137)
+.|...|..+++ ..-.++.+.+.||.+|+. ..|+++|..+|+++.+.+.
T Consensus 39 ~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 87 (899)
T TIGR02917 39 KAAIIQLKNALQ-KDPNDAEARFLLGKIYLA----LGDYAAAEKELRKALSLGY 87 (899)
T ss_pred HhHHHHHHHHHH-hCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Confidence 456666664332 233588999999999985 4789999999999987654
No 63
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=42.60 E-value=33 Score=23.09 Aligned_cols=21 Identities=24% Similarity=0.303 Sum_probs=18.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhh
Q 032634 89 TLREAKNGDKAMEVLVGQMYL 109 (137)
Q Consensus 89 ~lkAAe~GD~~AQ~~LG~MY~ 109 (137)
+..+|.+||+.|...+=.+|.
T Consensus 3 vI~~A~~GD~~A~~~IL~~y~ 23 (65)
T PF12645_consen 3 VIKAAKQGDPEAMEEILKHYE 23 (65)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 347899999999999988886
No 64
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=42.20 E-value=43 Score=26.13 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 96 GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 96 GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
.|..+.++||..|.. ..|+.+|...|++|.+.+
T Consensus 71 ~~~~~w~~Lg~~~~~----~g~~~~A~~a~~~Al~l~ 103 (198)
T PRK10370 71 QNSEQWALLGEYYLW----RNDYDNALLAYRQALQLR 103 (198)
T ss_pred CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 577777777777763 356677777777666543
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=42.13 E-value=50 Score=29.97 Aligned_cols=44 Identities=23% Similarity=0.167 Sum_probs=34.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhc---CCCccccHHHHHHHHHHhhcCC
Q 032634 89 TLREAKNGDKAMEVLVGQMYLS---GYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 89 ~lkAAe~GD~~AQ~~LG~MY~~---G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
+.+.+..|+-.-.+.+++.||. -.--..|.++|+.|+.||.+.+
T Consensus 164 A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~ 210 (389)
T COG2956 164 AERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD 210 (389)
T ss_pred HHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC
Confidence 3455667888889999999986 2335678999999999998876
No 66
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=41.36 E-value=44 Score=31.60 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHH-HcCC----HHHHHHHHHHhhcCCCccccHHHHHHHHHH
Q 032634 82 VQRWFQDTLREA-KNGD----KAMEVLVGQMYLSGYGVAEMKKRGMLGLRE 127 (137)
Q Consensus 82 A~~WF~~~lkAA-e~GD----~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~K 127 (137)
|.+.|+.++..| +.|| ++++|-||..|..+ +++++|+.++++
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll----~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLL----KEVQKAITYHQR 300 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHH----HHHHHHHHHHHH
Confidence 456666666554 4575 56789999999855 899999999986
No 67
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.80 E-value=67 Score=30.94 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhh
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELP 129 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAA 129 (137)
|.|..+|.. |.+.-..+++..+.|+.+|. .-.|..+|++||..|-
T Consensus 541 deald~f~k-lh~il~nn~evl~qianiye----~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 541 DEALDCFLK-LHAILLNNAEVLVQIANIYE----LLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHH-HHHHHHhhHHHHHHHHHHHH----HhhCHHHHHHHHHHhc
Confidence 456666664 56777888889999999998 4589999999998874
No 68
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=40.30 E-value=71 Score=29.46 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=30.1
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 92 EAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 92 AAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
.++-.++.++++||..|+. ..++++|+.+|++|.+.+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~----lGryeEAIa~f~rALeL~ 105 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFS----KGRVKDALAQFETALELN 105 (453)
T ss_pred cCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Confidence 4566788899999999984 378999999999988754
No 69
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=40.21 E-value=67 Score=25.93 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYL 109 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~ 109 (137)
+...+-......+|++||++|+..|-..|.
T Consensus 90 n~I~rkl~~ik~aa~~~d~~Al~iL~FYy~ 119 (165)
T PF11286_consen 90 NKIYRKLHKIKAAAEQGDPDALKILRFYYQ 119 (165)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455566667778999999999998865543
No 70
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=40.05 E-value=70 Score=31.40 Aligned_cols=47 Identities=13% Similarity=0.127 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
.|...|+.+++. .-.++.+.+.||.+|.. ..++++|..+|++|.+..
T Consensus 369 eA~~~~~~Al~~-~P~~~~a~~~Lg~~~~~----~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 369 QAERLYQQARQV-DNTDSYAVLGLGDVAMA----RKDYAAAERYYQQALRMD 415 (1157)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHhC
Confidence 455666632222 23678899999999984 368999999999987643
No 71
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=39.90 E-value=74 Score=31.23 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
+.|...|+.+++ ..-.|+.+.+.||.+|.. ..|+++|+..|++|.+.+
T Consensus 286 ~~A~~~l~~aL~-~~P~~~~a~~~Lg~~~~~----~g~~~eA~~~l~~Al~~~ 333 (1157)
T PRK11447 286 GKAIPELQQAVR-ANPKDSEALGALGQAYSQ----QGDRARAVAQFEKALALD 333 (1157)
T ss_pred HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence 467788875332 234799999999999984 469999999999998754
No 72
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=38.20 E-value=88 Score=24.76 Aligned_cols=43 Identities=9% Similarity=0.040 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHH--cCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 81 CVQRWFQDTLREAK--NGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 81 ~A~~WF~~~lkAAe--~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
.|...|.. ++. -.|+.+.+++|++|+.. .|...|.+-|+.|.+
T Consensus 87 ~AI~aY~~---A~~L~~ddp~~~~~ag~c~L~l----G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 87 EAIYAYGR---AAQIKIDAPQAPWAAAECYLAC----DNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHH---HHhcCCCCchHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Confidence 45566663 333 37999999999999965 677888888877754
No 73
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=35.40 E-value=95 Score=25.11 Aligned_cols=33 Identities=6% Similarity=-0.010 Sum_probs=19.4
Q ss_pred CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 96 GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 96 GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
.+..+...|+.+|.. ..++++|..+|+++.+.+
T Consensus 139 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~ 171 (389)
T PRK11788 139 FAEGALQQLLEIYQQ----EKDWQKAIDVAERLEKLG 171 (389)
T ss_pred chHHHHHHHHHHHHH----hchHHHHHHHHHHHHHhc
Confidence 345566666666653 356666666666665443
No 74
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=34.00 E-value=90 Score=28.53 Aligned_cols=46 Identities=9% Similarity=-0.031 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
.|...|+.++... =+..+.+++|..|.. .-++++|.++|++|..-+
T Consensus 438 ~A~~~l~rAl~L~--ps~~a~~~lG~~~~~----~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 438 EAYQAINKAIDLE--MSWLNYVLLGKVYEL----KGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence 4556666322222 256677777877774 357788888888886543
No 75
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=33.93 E-value=1.3e+02 Score=26.11 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 96 GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 96 GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
.+..+.+.+|.+|.. ..|+.+|..+|++|.+.
T Consensus 191 ~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~ 222 (899)
T TIGR02917 191 GNVDALLLKGDLLLS----LGNIELALAAYRKAIAL 222 (899)
T ss_pred CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHhh
Confidence 355566666666553 23666666666666543
No 76
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=33.56 E-value=1.2e+02 Score=19.59 Aligned_cols=13 Identities=8% Similarity=-0.102 Sum_probs=6.7
Q ss_pred cHHHHHHHHHHhh
Q 032634 117 MKKRGMLGLRELP 129 (137)
Q Consensus 117 D~~KA~~Wf~KAA 129 (137)
|+.+|+.+|..|+
T Consensus 20 ~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 20 NYEEALELYKEAI 32 (69)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4555555555544
No 77
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=33.34 E-value=1.3e+02 Score=22.84 Aligned_cols=48 Identities=4% Similarity=0.030 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHcCCH---HHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 80 DCVQRWFQDTLREAKNGDK---AMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~---~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
+.|...|+.+++.- -.++ .+.+.+|.+|.. ..++.+|+..|+++.+..
T Consensus 50 ~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~----~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 50 TEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYK----SGDYAEAIAAADRFIRLH 100 (235)
T ss_pred HHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHC
Confidence 35666776422221 1233 578999999985 479999999999987643
No 78
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=32.49 E-value=51 Score=17.76 Aligned_cols=24 Identities=13% Similarity=0.055 Sum_probs=16.4
Q ss_pred HHHHHHHHHhhcCCCccccHHHHHHHHH
Q 032634 99 AMEVLVGQMYLSGYGVAEMKKRGMLGLR 126 (137)
Q Consensus 99 ~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~ 126 (137)
.+.++||..|. -.-|+++|..+++
T Consensus 2 ~a~~~la~~~~----~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALL----AQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHH----HcCCHHHHHHHHh
Confidence 46677887776 3357777877765
No 79
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=32.44 E-value=30 Score=18.01 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=20.4
Q ss_pred CCCccccHHHHHHHHHHhhcCCCCCC
Q 032634 111 GYGVAEMKKRGMLGLRELPQVDLLPG 136 (137)
Q Consensus 111 G~GV~qD~~KA~~Wf~KAAeqg~~~~ 136 (137)
|+.-..+.++|.+.|.+--+.|+.|.
T Consensus 9 ~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 9 GLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44556788899999999888888764
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.03 E-value=1e+02 Score=26.58 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
|.|.+-|+.+++. .-++.+-.+|.|...| +.| -+++|+.||++|.+.
T Consensus 86 ~~A~e~YrkAlsl-~p~~GdVLNNYG~FLC-~qg---~~~eA~q~F~~Al~~ 132 (250)
T COG3063 86 DLADESYRKALSL-APNNGDVLNNYGAFLC-AQG---RPEEAMQQFERALAD 132 (250)
T ss_pred hhHHHHHHHHHhc-CCCccchhhhhhHHHH-hCC---ChHHHHHHHHHHHhC
Confidence 4566777743222 2256666778887766 445 678888888888764
No 81
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=31.93 E-value=68 Score=31.83 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCCC
Q 032634 87 QDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLLP 135 (137)
Q Consensus 87 ~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~~ 135 (137)
.++|+-++ +|+--..-+|.|+. -++-+++|.+||++|...|---
T Consensus 807 ~DALkkce-~dphVllaia~lfw----~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 807 IDALKKCE-HDPHVLLAIAKLFW----SEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred HHHHHhcc-CCchhHHHHHHHHH----HHHHHHHHHHHHHHHHccCCcc
Confidence 44455554 57777788888888 4688999999999998876543
No 82
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=31.73 E-value=39 Score=34.11 Aligned_cols=30 Identities=13% Similarity=0.035 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 99 AMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 99 ~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
.+.|++|.+|. ..-|+++|+.+|..|...+
T Consensus 308 es~Y~~gRs~H----a~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 308 ESFYQLGRSYH----AQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHHHHHHH----hhccHHHHHHHHHHHHccC
Confidence 45666666665 3446666666666665543
No 83
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=30.56 E-value=61 Score=25.57 Aligned_cols=14 Identities=7% Similarity=-0.047 Sum_probs=6.9
Q ss_pred cHHHHHHHHHHhhc
Q 032634 117 MKKRGMLGLRELPQ 130 (137)
Q Consensus 117 D~~KA~~Wf~KAAe 130 (137)
++++|..||+++..
T Consensus 229 ~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 229 RYEEALEYLEKALK 242 (280)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred cccccccccccccc
Confidence 44555555555543
No 84
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=27.77 E-value=1.6e+02 Score=27.21 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCcc-ccHHHHHHHHHHhhcC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVA-EMKKRGMLGLRELPQV 131 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~-qD~~KA~~Wf~KAAeq 131 (137)
.|...|..++. ..-+++.+.++||.+|..- |-. ....+|..+|++|.+.
T Consensus 230 eA~~~~~~al~-~~p~~~~~~~~Lg~~l~~~-G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 230 EAIQTGESALA-RGLDGAALRRSLGLAYYQS-GRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHHHHHHHh-cCCCCHHHHHHHHHHHHHc-CCchhhHHHHHHHHHHHHhh
Confidence 45566664332 2345777888888877752 222 1223577777777654
No 85
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.87 E-value=1e+02 Score=29.54 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHH------HHHHHHHhhcCCCccccHHHHHHHHHHh
Q 032634 80 DCVQRWFQDTLREAKNGDKAM------EVLVGQMYLSGYGVAEMKKRGMLGLREL 128 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~A------Q~~LG~MY~~G~GV~qD~~KA~~Wf~KA 128 (137)
..|..||+.++.-++.-+... +.|||..|. --.-+.+|+..|++|
T Consensus 431 ~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R----kl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 431 PEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR----KLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH----HHhhHHHHHHHHHHH
No 86
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=26.38 E-value=1.4e+02 Score=25.52 Aligned_cols=30 Identities=7% Similarity=0.128 Sum_probs=24.0
Q ss_pred HcCCH--HHHHHHHHHhhcCCCccccHHHHHHHHHH
Q 032634 94 KNGDK--AMEVLVGQMYLSGYGVAEMKKRGMLGLRE 127 (137)
Q Consensus 94 e~GD~--~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~K 127 (137)
.-+|+ .....||.+|+. ..++.+|.++|++
T Consensus 329 ~p~~~~~~ll~sLg~l~~~----~~~~~~A~~~le~ 360 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMK----HGEFIEAADAFKN 360 (409)
T ss_pred CCCChhHHHHHHHHHHHHH----cccHHHHHHHHHH
Confidence 44777 667789999874 5789999999995
No 87
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=26.21 E-value=82 Score=31.93 Aligned_cols=30 Identities=7% Similarity=-0.103 Sum_probs=19.1
Q ss_pred cCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHh
Q 032634 95 NGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLREL 128 (137)
Q Consensus 95 ~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KA 128 (137)
.-||.+...|+.+|+. ..|++.+...+.-|
T Consensus 267 ~~nP~~l~~LAn~fyf----K~dy~~v~~la~~a 296 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYF----KKDYERVWHLAEHA 296 (1018)
T ss_pred CCCcHHHHHHHHHHhh----cccHHHHHHHHHHH
Confidence 3577777777777773 45666665555444
No 88
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=25.58 E-value=55 Score=31.49 Aligned_cols=34 Identities=9% Similarity=0.137 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032634 95 NGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD 132 (137)
Q Consensus 95 ~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg 132 (137)
.-.|++++-+|.+|. ..+|.+.|++.|++|.+-|
T Consensus 418 ~~sPesWca~GNcfS----LQkdh~~Aik~f~RAiQld 451 (638)
T KOG1126|consen 418 PNSPESWCALGNCFS----LQKDHDTAIKCFKRAIQLD 451 (638)
T ss_pred CCCcHHHHHhcchhh----hhhHHHHHHHHHHHhhccC
Confidence 346788888888887 7899999999999998765
No 89
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=25.43 E-value=2.1e+02 Score=23.22 Aligned_cols=47 Identities=4% Similarity=-0.046 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHcCC--HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 81 CVQRWFQDTLREAKNGD--KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD--~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
.|..-|+.++...-.+. ..|+++||..|+. ..|+.+|..+|++..+.
T Consensus 50 ~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~----~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 50 QAITQLEALDNRYPFGPYSQQVQLDLIYAYYK----NADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHh
Confidence 56677775444444342 2345899999985 48899999999998765
No 90
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=25.26 E-value=1.7e+02 Score=27.86 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 97 DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 97 D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
|-.|.|-||++|. +-.-+.=|.++|+||.+
T Consensus 397 DyRAWYGLGQaYe----im~Mh~YaLyYfqkA~~ 426 (559)
T KOG1155|consen 397 DYRAWYGLGQAYE----IMKMHFYALYYFQKALE 426 (559)
T ss_pred hHHHHhhhhHHHH----HhcchHHHHHHHHHHHh
Confidence 5556666666665 34445556666666543
No 91
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=24.54 E-value=64 Score=23.88 Aligned_cols=37 Identities=30% Similarity=0.353 Sum_probs=26.5
Q ss_pred hhHHHHHHHHhcCCcccccccCCCCCCCCCCCcccccc
Q 032634 10 TTLRDLARIVSSSSPERLQRVRPRHSKPPPTSVVSARS 47 (137)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 47 (137)
.+.+.|-|.|+|+ |+.-.-.-|.--.|+.+|||++.+
T Consensus 55 DQVrAlHRlvTsS-pe~d~~~a~aav~~~~~~~~~~~~ 91 (92)
T PHA02681 55 DQVRAFHALVTSS-PEDDPAPAPAAVSPVARNRFSAAS 91 (92)
T ss_pred HHHHHHHHHHhCC-CCCCCCcCccccCHHHhccccccc
Confidence 5678999999997 553333445566788889998764
No 92
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=24.47 E-value=1.9e+02 Score=24.92 Aligned_cols=49 Identities=12% Similarity=0.038 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCC
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDL 133 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~ 133 (137)
|.|..-|.++++. ..+++....|||..|+ +.-|++.|..++..|..++-
T Consensus 151 ~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~----L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 151 DEARRAYRQALEL-APNEPSIANNLGMSLL----LRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred hHHHHHHHHHHHh-ccCCchhhhhHHHHHH----HcCCHHHHHHHHHHHHhCCC
Confidence 3566777754333 2367788889998888 67799999999999987654
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=23.93 E-value=1.9e+02 Score=23.05 Aligned_cols=46 Identities=11% Similarity=-0.013 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
.|...|+.+++. .-.|+.+...||.+|+. ..++++|..||+++.+.
T Consensus 132 ~A~~~~~~al~~-~p~~~~~~~~la~i~~~----~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 132 RAEEAARRALEL-NPDDAWAVHAVAHVLEM----QGRFKEGIAFMESWRDT 177 (355)
T ss_pred HHHHHHHHHHhh-CCCCcHHHHHHHHHHHH----cCCHHHHHHHHHhhhhc
Confidence 455556533322 23457778888888774 35678888888887654
No 94
>PF13041 PPR_2: PPR repeat family
Probab=23.72 E-value=84 Score=18.67 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=20.9
Q ss_pred cCCCccccHHHHHHHHHHhhcCCCCCC
Q 032634 110 SGYGVAEMKKRGMLGLRELPQVDLLPG 136 (137)
Q Consensus 110 ~G~GV~qD~~KA~~Wf~KAAeqg~~~~ 136 (137)
.|+.-..+.++|.+.|++--+.|..|.
T Consensus 11 ~~~~~~~~~~~a~~l~~~M~~~g~~P~ 37 (50)
T PF13041_consen 11 SGYCKAGKFEEALKLFKEMKKRGIKPD 37 (50)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 344566788999999998888888774
No 95
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=23.50 E-value=2.5e+02 Score=23.91 Aligned_cols=48 Identities=8% Similarity=-0.062 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
+.|..+|+.+......-|......||.+|.. ..|.++|.+.|++|-..
T Consensus 352 ~~A~~~le~a~a~~~~p~~~~~~~La~ll~~----~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 352 IEAADAFKNVAACKEQLDANDLAMAADAFDQ----AGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence 3578888732233345677777799999984 36789999999998543
No 96
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.09 E-value=1e+02 Score=27.09 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHhhcCCCccccHHHHHHHHHH
Q 032634 95 NGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRE 127 (137)
Q Consensus 95 ~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~K 127 (137)
-+|.+|...|+.||.+ ..|+++|..+|+.
T Consensus 151 ~~D~EAW~eLaeiY~~----~~~f~kA~fClEE 179 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYLS----EGDFEKAAFCLEE 179 (289)
T ss_pred cCcHHHHHHHHHHHHh----HhHHHHHHHHHHH
Confidence 3799999999999984 5789999998875
No 97
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=23.00 E-value=1.9e+02 Score=28.78 Aligned_cols=31 Identities=10% Similarity=-0.113 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032634 96 GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 96 GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe 130 (137)
+|+.+.++||.+|. ...|+++|...|++|.+
T Consensus 675 ~~~~a~~nLA~al~----~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 675 DDPALIRQLAYVNQ----RLDDMAATQHYARLVID 705 (987)
T ss_pred CCHHHHHHHHHHHH----HCCCHHHHHHHHHHHHh
Confidence 34444455554443 22344455555555443
No 98
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=22.00 E-value=1.9e+02 Score=28.86 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
.|..+|+.+++..- ++.+.+++|.+|.. ..++++|..+|++|.+.
T Consensus 594 eAl~~~~~AL~l~P--~~~a~~~LA~~l~~----lG~~deA~~~l~~AL~l 638 (987)
T PRK09782 594 LALNDLTRSLNIAP--SANAYVARATIYRQ----RHNVPAAVSDLRAALEL 638 (987)
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 44455553222211 35555666655553 24555555555555543
No 99
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=21.03 E-value=1.4e+02 Score=26.05 Aligned_cols=32 Identities=9% Similarity=-0.061 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhc-----CCCccccHHHHHHHHHHhhc
Q 032634 99 AMEVLVGQMYLS-----GYGVAEMKKRGMLGLRELPQ 130 (137)
Q Consensus 99 ~AQ~~LG~MY~~-----G~GV~qD~~KA~~Wf~KAAe 130 (137)
.-.||||.+|.. ..+...+.++|...|+.||-
T Consensus 115 ~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG 151 (361)
T cd09239 115 SVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAW 151 (361)
T ss_pred HHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Confidence 367899998842 23456679999999999983
No 100
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=20.25 E-value=2.9e+02 Score=25.56 Aligned_cols=45 Identities=7% Similarity=0.136 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032634 82 VQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131 (137)
Q Consensus 82 A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq 131 (137)
|..+|+.+++. .-.++.+..+||.+|.. ..++++|+.+|++|.+.
T Consensus 269 A~~~~~~Al~l-~P~~~~a~~~lg~~l~~----~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 269 AAEHWRHALQF-NSDNVRIVTLYADALIR----TGQNEKAIPLLQQSLAT 313 (656)
T ss_pred HHHHHHHHHhh-CCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHh
Confidence 55666643322 22466666666666653 24566666666665543
Done!