Citrus Sinensis ID: 032635

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MGKSIASTVTTLRDLARIVSSSSPERLQRVRPRHSKPPPTSVVSARSETKARPIVKKPKMNINWDTQQQQRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLLPGN
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MGKSIASTVTTLRDLARIvssssperlqrvrprhskppptsvvsarsetkarpivkkpkmninwdtqqqqrvplsQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKrgmlglrelpqvdllpgn
Flexible Loop (DISEMBL)
mgksiastvttlrdlarivssssperlqrvrprhskppptsvvsarsetkarpivkkpkmninWDTQQQQRVPLSQVVSDCVQRWFQDTLReakngdkamEVLVGQMYLSGYGVAEMKKRGmlglrelpqvdllpgn
Low Complexity Region (SEG)
MGKSIASTVTTLRDLARIVSSSSPERLQRVRPRHSKPPPTSVVSARSETKARPIVKKPKMNINWDTQQQQRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLLPGN
Disordered region (IsUnstruct)
***************************************************************W******RVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGL************
Disordered Region (DISOPRED)
*********TTLRD***********************************************************LSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELP*V******
Disordered Region (DISEMBL)
********VTTLRDLARIVS*****************************KARPIVKKPKMNINWDTQQQQRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLLPGN
Disordered Region (DISPRO)
**********TLRDLARIVSSSSPERLQRVRPRH************************************RVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGKSIASTVTTLRDLARIVSSSSPERLQRVRPRHSKPPPTSVVSARSETKARPIVKKPKMNINWDTQQQQRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLLPGN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
225448595	156	PREDICTED: uncharacterized protein LOC10	0.832	0.730	0.475	6e-20
255645305	159	unknown [Glycine max]	0.846	0.729	0.483	7e-19
356567959	159	PREDICTED: uncharacterized protein LOC10	0.846	0.729	0.483	8e-19
224109214	150	predicted protein [Populus trichocarpa]	0.824	0.753	0.467	1e-16
449457437	181	PREDICTED: uncharacterized protein LOC10	0.824	0.624	0.392	2e-16
449457439	157	PREDICTED: uncharacterized protein LOC10	0.824	0.719	0.392	2e-16
225439584	100	PREDICTED: uncharacterized protein LOC10	0.416	0.57	0.666	3e-15
225439586	99	PREDICTED: uncharacterized protein LOC10	0.386	0.535	0.716	4e-15
449483597	100	PREDICTED: uncharacterized LOC101206121	0.481	0.66	0.590	2e-14
28393833	157	unknown protein [Arabidopsis thaliana] g	0.379	0.331	0.673	2e-14

>gi|225448595|ref|XP_002278553.1| PREDICTED: uncharacterized protein LOC100253518 isoform 1 [Vitis vinifera] gi|359486360|ref|XP_003633434.1| PREDICTED: uncharacterized protein LOC100253518 isoform 2 [Vitis vinifera]

 Score =  102 bits (253), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 59/124 (47%), Positives = 85/124 (68%), Gaps = 10/124 (8%)

Query: 1   MGKSIASTVTTLRDLARIVSSSSPERLQRVRPRHSKPPPTSVVSARSETK---ARPIVKK 57
           MGKS+ +T T L++ AR+V+S   E+ Q   P+H+KP   + VS    TK   AR   ++
Sbjct: 1   MGKSLPTT-TRLQEFARVVTS---EKFQS--PKHAKPISRNRVSPPETTKLRGARLGSER 54

Query: 58  PKMNINWDTQQQQRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEM 117
            ++ +   ++ Q+R+PL+QVVSDC +RWFQDTL+EAK GD  M+VLVGQMY SGYGV+  
Sbjct: 55  VRLKME-SSEGQRRMPLAQVVSDCAKRWFQDTLKEAKAGDTTMQVLVGQMYFSGYGVSRD 113

Query: 118 KKRG 121
            ++G
Sbjct: 114 AQKG 117

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645305|gb|ACU23149.1| unknown [Glycine max]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 76/122 (62%), Gaps = 6/122 (4%)

Query: 1   MGKSIASTVTTLRDLARIVSSSS-PERLQRVRPRHSKPPPTSVVSARSETKARPIVKKPK 59
           MGK + S    L +L+RIVSS++ P R +R  PR     P  V + RS       V+  K
Sbjct: 1   MGKYLESAAR-LAELSRIVSSAAKPNRPKRALPRS----PNRVATPRSANPFGVKVEPAK 55

Query: 60  MNINWDTQQQQRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKK 119
                + +QQ R PL++VVSDC +RWFQDTL+EAK GD  M+VLVGQMY SGYGVA   +
Sbjct: 56  KMEPLEEEQQCRTPLAKVVSDCSKRWFQDTLKEAKAGDTTMQVLVGQMYYSGYGVARDPQ 115

Query: 120 RG 121
           +G
Sbjct: 116 KG 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567959|ref|XP_003552182.1| PREDICTED: uncharacterized protein LOC100779520 [Glycine max]

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 76/122 (62%), Gaps = 6/122 (4%)

Query: 1   MGKSIASTVTTLRDLARIVSSSS-PERLQRVRPRHSKPPPTSVVSARSETKARPIVKKPK 59
           MGK + S    L +L+RIVSS++ P R +R  PR     P  V + RS       V+  K
Sbjct: 1   MGKYLESAAR-LAELSRIVSSAAKPNRPKRALPRS----PNRVATPRSANPFGVKVEPAK 55

Query: 60  MNINWDTQQQQRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKK 119
                + +QQ R PL++VVSDC +RWFQDTL+EAK GD  M+VLVGQMY SGYGVA   +
Sbjct: 56  KMEPLEEEQQCRTPLAKVVSDCSKRWFQDTLKEAKAGDTTMQVLVGQMYYSGYGVARDPQ 115

Query: 120 RG 121
           +G
Sbjct: 116 KG 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109214|ref|XP_002315124.1| predicted protein [Populus trichocarpa] gi|222864164|gb|EEF01295.1| predicted protein [Populus trichocarpa]

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/122 (46%), Positives = 78/122 (63%), Gaps = 9/122 (7%)

Query: 1   MGKSIASTVTTLRDLARIVSSSSPERLQRVRPR-HSKPPPTSVVSARSETKARPIVKKPK 59
           MGKS+ ST   L +L++IVSS  P   + + P   S+P    V S R + K     K  +
Sbjct: 1   MGKSLPST-GKLLELSKIVSSHKPRHKRSIVPVVPSRPSEVRVDSERLKVK-----KMEE 54

Query: 60  MNINWDTQQQQRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKK 119
            ++  D Q+  RVPL QVVSDC +RWF+DTL+EAK GD +M+VLVGQMY +GYGV +  +
Sbjct: 55  SSLILDGQK--RVPLGQVVSDCAKRWFEDTLKEAKTGDISMQVLVGQMYFNGYGVPKDVE 112

Query: 120 RG 121
           +G
Sbjct: 113 KG 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457437|ref|XP_004146455.1| PREDICTED: uncharacterized protein LOC101213931 isoform 1 [Cucumis sativus] gi|449529732|ref|XP_004171852.1| PREDICTED: uncharacterized protein LOC101228310 isoform 1 [Cucumis sativus]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 12/125 (9%)

Query: 1   MGKSIASTVTTLRDLARIVSSSSPE---RLQRVRPRHSKPPPTSVVSARSETKARPIVKK 57
           M KS+ S     +    + SS +P+   +  R+R   S+ P +  V          ++ +
Sbjct: 1   MAKSLPSPARFQQFAKLVFSSKNPQSQPKKSRIRASPSETPISGSVR---------VISE 51

Query: 58  PKMNINWDTQQQQRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEM 117
           P  N   + +++ R PL+ VVSDCV+RWFQDTL+EAK GD +M+VLVGQM+ SGYGV + 
Sbjct: 52  PNKNKYMEEEEKNRTPLADVVSDCVKRWFQDTLKEAKAGDTSMQVLVGQMFCSGYGVPKN 111

Query: 118 KKRGM 122
            K+G+
Sbjct: 112 TKKGL 116

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457439|ref|XP_004146456.1| PREDICTED: uncharacterized protein LOC101213931 isoform 2 [Cucumis sativus] gi|449457441|ref|XP_004146457.1| PREDICTED: uncharacterized protein LOC101213931 isoform 3 [Cucumis sativus] gi|449529734|ref|XP_004171853.1| PREDICTED: uncharacterized protein LOC101228310 isoform 2 [Cucumis sativus] gi|449529736|ref|XP_004171854.1| PREDICTED: uncharacterized protein LOC101228310 isoform 3 [Cucumis sativus]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 74/125 (59%), Gaps = 12/125 (9%)

Query: 1   MGKSIASTVTTLRDLARIVSSSSPE---RLQRVRPRHSKPPPTSVVSARSETKARPIVKK 57
           M KS+ S     +    + SS +P+   +  R+R   S+ P +  V          ++ +
Sbjct: 1   MAKSLPSPARFQQFAKLVFSSKNPQSQPKKSRIRASPSETPISGSVR---------VISE 51

Query: 58  PKMNINWDTQQQQRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEM 117
           P  N   + +++ R PL+ VVSDCV+RWFQDTL+EAK GD +M+VLVGQM+ SGYGV + 
Sbjct: 52  PNKNKYMEEEEKNRTPLADVVSDCVKRWFQDTLKEAKAGDTSMQVLVGQMFCSGYGVPKN 111

Query: 118 KKRGM 122
            K+G+
Sbjct: 112 TKKGL 116

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439584|ref|XP_002265642.1| PREDICTED: uncharacterized protein LOC100243041 isoform 1 [Vitis vinifera] gi|359481191|ref|XP_003632590.1| PREDICTED: uncharacterized protein LOC100243041 [Vitis vinifera]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 47/57 (82%)

Query: 69  QQRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGL 125
             RVPLS+VVSDCV+RWFQDTLREAK+GD +M+VLVGQMY SGYGV    ++G + +
Sbjct: 10  HHRVPLSEVVSDCVKRWFQDTLREAKSGDVSMQVLVGQMYYSGYGVPRDAQKGRVWM 66

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439586|ref|XP_002265673.1| PREDICTED: uncharacterized protein LOC100243041 isoform 2 [Vitis vinifera]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 45/53 (84%)

Query: 69  QQRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRG 121
             RVPLS+VVSDCV+RWFQDTLREAK+GD +M+VLVGQMY SGYGV    ++G
Sbjct: 10  HHRVPLSEVVSDCVKRWFQDTLREAKSGDVSMQVLVGQMYYSGYGVPRDAQKG 62

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483597|ref|XP_004156634.1| PREDICTED: uncharacterized LOC101206121 [Cucumis sativus]

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 50/66 (75%)

Query: 60  MNINWDTQQQQRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKK 119
           M I+  T+   RVPLS+VVSDCV+RWF+DTL+EAK GD  M+VLVGQMY SGYGV    +
Sbjct: 1   MEISGATEALNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 120 RGMLGL 125
           +G + +
Sbjct: 61  KGRIWM 66

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28393833|gb|AAO42324.1| unknown protein [Arabidopsis thaliana] gi|110737142|dbj|BAF00521.1| hypothetical protein [Arabidopsis thaliana]

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 44/52 (84%)

Query: 70  QRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRG 121
            RVPL+QVV DCV+RWFQDTL+EAK+GD  M+VLVGQMY SGYG+ + + +G
Sbjct: 70  NRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKG 121

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
TAIR|locus:2153559	163	AT5G05360 [Arabidopsis thalian	0.372	0.312	0.686	1.3e-15
TAIR|locus:2057227	138	AT2G38450 [Arabidopsis thalian	0.437	0.434	0.566	1e-13

TAIR|locus:2153559 AT5G05360 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 35/51 (68%), Positives = 44/51 (86%)

Query:    71 RVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRG 121
             RVPL+QVV DCV+RWFQDTL+EAK+GD  M+VLVGQMY SGYG+ + + +G
Sbjct:    77 RVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKG 127

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057227 AT2G38450 [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 34/60 (56%), Positives = 45/60 (75%)

Query:    72 VPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV 131
             VPLS VVSDC +RWF+DTL EAK G+  M+VL+GQMY SGYGV +  ++G L + +  +V
Sbjct:    55 VPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWITKASRV 114


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      137       137   0.00091  102 3  11 22  0.45    31
                                                     30  0.45    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  127 KB (2081 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.64u 0.13s 16.77t   Elapsed:  00:00:01
  Total cpu time:  16.64u 0.13s 16.77t   Elapsed:  00:00:01
  Start:  Thu May  9 19:08:13 2013   End:  Thu May  9 19:08:14 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029389001 SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (156 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
smart00671	36	SEL1 Sel1-like repeats. These represent a subfamil	99.21
PF08238	39	Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like r	99.14
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	99.13
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	99.1
KOG1550	552	consensus Extracellular protein SEL-1 and related	98.53
KOG1550	552	consensus Extracellular protein SEL-1 and related	98.33
KOG4014	248	consensus Uncharacterized conserved protein (conta	97.45
KOG4014	248	consensus Uncharacterized conserved protein (conta	96.11
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.2
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	92.36
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	91.28
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	91.28
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	89.06
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.7
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	88.57
TIGR02552	135	LcrH_SycD type III secretion low calcium response	84.11
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	83.13
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	82.92
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	82.34
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	81.3
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	80.64

>smart00671 SEL1 Sel1-like repeats

Probab=99.21  E-value=1.7e-11  Score=70.29  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCC
Q 032635           98 KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDL  133 (137)
Q Consensus        98 ~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~  133 (137)
                      +.||+.||.||..|.|+++|..+|++||++||++|+
T Consensus         1 ~~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g~   36 (36)
T smart00671        1 AEAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELGN   36 (36)
T ss_pred             CHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHccC
Confidence            369999999999999999999999999999999985

These represent a subfamily of TPR (tetratricopeptide repeat) sequences.

>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []

Probab=99.14  E-value=5.7e-11  Score=69.36  Aligned_cols=36  Identities=17%  Similarity=0.243  Sum_probs=33.5

Q ss_pred             HHHHHHHH--HHhhcCC-CccccHHHHHHHHHHhhcCCC
Q 032635           98 KAMEVLVG--QMYLSGY-GVAEMKKRGMLGLRELPQVDL  133 (137)
Q Consensus        98 ~~AQ~~LG--~MY~~G~-GV~qD~~KA~~Wf~KAAeqg~  133 (137)
                      +.||++||  .||.+|. |+++|..+|++||++||++|+
T Consensus         1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g~   39 (39)
T PF08238_consen    1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQGH   39 (39)
T ss_dssp             HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT-
T ss_pred             ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHccC
Confidence            57999999  9999999 899999999999999999985

Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=99.13  E-value=9e-11  Score=93.09  Aligned_cols=54  Identities=17%  Similarity=0.263  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCCCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLLPG  136 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~~~  136 (137)
                      ..+..||.   .+|+.|++.+|++||.||..|.||++|+.+|.+||++||++|+.++
T Consensus        94 ~~A~~~~~---~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a  147 (292)
T COG0790          94 TKAADWYR---CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA  147 (292)
T ss_pred             HHHHHHHH---HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH
Confidence            45889999   7999999999999999999999999999999999999999999864

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=99.10  E-value=1.7e-10  Score=91.53  Aligned_cols=50  Identities=20%  Similarity=0.337  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDL  133 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~  133 (137)
                      .+..||.   ++|+.|++.||++||.||.+|.||++|..+|++||.+||++|+
T Consensus       173 ~A~~~~~---~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         173 KALYLYR---KAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             hHHHHHH---HHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            6889999   7999999999999999999999999999999999999999997

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.53  E-value=1.3e-07  Score=84.32  Aligned_cols=52  Identities=13%  Similarity=0.096  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCCC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLLP  135 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~~  135 (137)
                      .|.+||.   .||+.|++.|+++|+.||..|.||++|..+|+.||.+||+.|...
T Consensus       346 ~A~~yy~---~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~  397 (552)
T KOG1550|consen  346 RAFEYYS---LAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPS  397 (552)
T ss_pred             HHHHHHH---HHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChh
Confidence            5889998   799999999999999999999999999999999999999999643

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.33  E-value=8.9e-07  Score=79.14  Aligned_cols=48  Identities=23%  Similarity=0.412  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-CCccccHHHHHHHHHHhhc
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSG-YGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G-~GV~qD~~KA~~Wf~KAAe  130 (137)
                      ..++.||+   .+|+.|+..||+.+|.||+.| +||++|.++|++||++||+
T Consensus       229 ~~a~~~~~---~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~  277 (552)
T KOG1550|consen  229 SEAFKYYR---EAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAE  277 (552)
T ss_pred             hHHHHHHH---HHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHH
Confidence            35889999   799999999999999999999 9999999999999999998

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=97.45  E-value=0.00037  Score=58.30  Aligned_cols=60  Identities=17%  Similarity=0.168  Sum_probs=47.6

Q ss_pred             CCcCchhhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           70 QRVPLSQVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        70 ~~~pl~~vv~d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      .|..|..+..| ...-|+-+.+|++.+.+.|+.|+.+||..|.||++|..+|..+-.+|-+
T Consensus       173 ~~~~~~~~~kD-Mdka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e  232 (248)
T KOG4014|consen  173 DRAELGSLSKD-MDKALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKE  232 (248)
T ss_pred             chhhhhhhhHh-HHHHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHH
Confidence            34445545443 3444555569999999999999999999999999999999998888754

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=96.11  E-value=0.01  Score=49.86  Aligned_cols=51  Identities=18%  Similarity=0.266  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----------CCcc----------ccHHHHHHHHHHhhcCCCC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSG----------YGVA----------EMKKRGMLGLRELPQVDLL  134 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G----------~GV~----------qD~~KA~~Wf~KAAeqg~~  134 (137)
                      .+.+++.   ++++.+|..|+|+|..||..|          .|-|          +|..+|+++-.||++-|++
T Consensus       130 Ka~~y~t---raCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~  200 (248)
T KOG4014|consen  130 KAERYMT---RACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIP  200 (248)
T ss_pred             HHHHHHH---HhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCCh
Confidence            5778888   899999999999999999987          3666          9999999999999999876

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.20  E-value=0.17  Score=27.77  Aligned_cols=30  Identities=10%  Similarity=0.080  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           98 KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        98 ~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.+.+.||..|+.    ..++++|+++|++|.+.
T Consensus         1 a~~~~~lg~~~~~----~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    1 AEAWYYLGQAYYQ----LGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence            4578899999984    48999999999999764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=92.36  E-value=0.33  Score=31.28  Aligned_cols=47  Identities=13%  Similarity=0.138  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHH-cCC-----HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           80 DCVQRWFQDTLREAK-NGD-----KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        80 d~A~~WF~~~lkAAe-~GD-----~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +.|..+|+.+++..+ .|+     +.+.++||.+|.    -..|+++|+++|++|.+
T Consensus        22 ~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~----~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen   22 DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY----RLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH----HTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHh
Confidence            467788887777643 343     456688888887    44789999999999864

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=91.28  E-value=0.61  Score=29.05  Aligned_cols=45  Identities=11%  Similarity=0.102  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKN--GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~--GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|...|+.   +.+.  +++.+.+.||.+|.    ...++.+|..+|+++.+.
T Consensus        14 ~~A~~~~~~---~l~~~P~~~~a~~~lg~~~~----~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen   14 DEAIAAFEQ---ALKQDPDNPEAWYLLGRILY----QQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHH---HHCCSTTHHHHHHHHHHHHH----HTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHHCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHH
Confidence            456677773   4444  48999999999999    458999999999999754

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=91.28  E-value=0.66  Score=29.03  Aligned_cols=48  Identities=8%  Similarity=0.191  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|...|..+++. .-.++.+.+++|.+|..= |  +++.+|++.|++|.+.
T Consensus        20 ~~A~~~~~~ai~~-~p~~~~~~~~~g~~~~~~-~--~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen   20 EEAIEYFEKAIEL-DPNNAEAYYNLGLAYMKL-G--KDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHH-STTHHHHHHHHHHHHHHT-T--THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHh-C--ccHHHHHHHHHHHHHc
Confidence            3577888854443 456899999999999842 1  4799999999999753

...

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.06  E-value=0.79  Score=25.43  Aligned_cols=30  Identities=7%  Similarity=0.021  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           98 KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        98 ~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.+.+++|.+|.    ...++.+|+..|++|.+-
T Consensus         1 a~~~~~~g~~~~----~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    1 AEAYYNLGNAYF----QLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHH----HTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH----HhCCchHHHHHHHHHHHH
Confidence            457889999998    558999999999999764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.70  E-value=0.84  Score=25.60  Aligned_cols=29  Identities=10%  Similarity=0.004  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           98 KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        98 ~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +.++.+||.+|..    ..++.+|..|+++|.+
T Consensus         2 a~~~~~la~~~~~----~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRA----QGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHH----CT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh----hhhcchhhHHHHHHHH
Confidence            3588999999983    4799999999999864

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=88.57  E-value=0.75  Score=26.72  Aligned_cols=26  Identities=8%  Similarity=0.029  Sum_probs=21.3

Q ss_pred             HHHHHHHHhhcCCCccccHHHHHHHHHHhh
Q 032635          100 MEVLVGQMYLSGYGVAEMKKRGMLGLRELP  129 (137)
Q Consensus       100 AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAA  129 (137)
                      |..+||.+|..    ..|+++|+.+|++|.
T Consensus         1 al~~Lg~~~~~----~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQ----QGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHH----CT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence            56789999994    489999999999964

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=84.11  E-value=3.5  Score=28.51  Aligned_cols=47  Identities=6%  Similarity=-0.084  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      .|..+|..+++. .-.++...+++|.+|..    ..|+++|..||+++.+.+
T Consensus        69 ~A~~~~~~~~~~-~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        69 EAIDAYALAAAL-DPDDPRPYFHAAECLLA----LGEPESALKALDLAIEIC  115 (135)
T ss_pred             HHHHHHHHHHhc-CCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhc
Confidence            455566532111 22357777888887773    367888888888776644

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=83.13  E-value=4.7  Score=23.45  Aligned_cols=30  Identities=3%  Similarity=-0.040  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           98 KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        98 ~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      ..+.+.+|.+|..-    .++.+|..+|+++.+.
T Consensus        34 ~~~~~~~~~~~~~~----~~~~~a~~~~~~~~~~   63 (100)
T cd00189          34 ADAYYNLAAAYYKL----GKYEEALEDYEKALEL   63 (100)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhC
Confidence            35666666666542    5566666666666554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=82.92  E-value=2.9  Score=37.16  Aligned_cols=53  Identities=15%  Similarity=0.196  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----CCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLS-----GYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~-----G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|.+++..++...+.-+++...++|..|..     +.--.....+|+.||.||.+..
T Consensus       199 e~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~  256 (374)
T PF13281_consen  199 EKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE  256 (374)
T ss_pred             HHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence            4577888876777788899999999999975     3445566999999999998754

>smart00028 TPR Tetratricopeptide repeats

Probab=82.34  E-value=2.2  Score=20.61  Aligned_cols=29  Identities=10%  Similarity=0.055  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           99 AMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        99 ~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      .+.+++|.+|..    ..++++|..||+++.+.
T Consensus         2 ~~~~~~a~~~~~----~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        2 EALYNLGNAYLK----LGDYDEALEYYEKALEL   30 (34)
T ss_pred             hHHHHHHHHHHH----HhhHHHHHHHHHHHHcc
Confidence            356788888874    47899999999998764

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=81.30  E-value=2.2  Score=22.93  Aligned_cols=28  Identities=7%  Similarity=0.008  Sum_probs=23.7

Q ss_pred             HHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           99 AMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        99 ~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +|++++|.+|..    ..|..+|...|++..+
T Consensus         1 ~a~~~~a~~~~~----~g~~~~A~~~~~~~~~   28 (33)
T PF13174_consen    1 DALYRLARCYYK----LGDYDEAIEYFQRLIK   28 (33)
T ss_dssp             HHHHHHHHHHHH----HCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence            488999999996    3799999999998764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=80.64  E-value=2.7  Score=26.88  Aligned_cols=28  Identities=4%  Similarity=-0.121  Sum_probs=23.2

Q ss_pred             HHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           99 AMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        99 ~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      .++++||.+|.    -..++++|+.+|++|.+
T Consensus         6 ~~~~~la~~~~----~~~~~~~A~~~~~~al~   33 (78)
T PF13424_consen    6 NAYNNLARVYR----ELGRYDEALDYYEKALD   33 (78)
T ss_dssp             HHHHHHHHHHH----HTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----HcCCHHHHHHHHHHHHH
Confidence            47889999998    45799999999999975

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.37
1klx_A	138	Cysteine rich protein B; structural genomics, heli	99.34
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.04
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.03
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.96
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.94
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.76
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.72
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.44
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.37
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	94.27
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.15
2l6j_A	111	TPR repeat-containing protein associated with HSP;	93.36
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	92.75
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	92.34
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	92.17
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	92.02
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	91.84
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	91.73
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	91.68
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	91.4
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	91.32
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	90.56
2kat_A	115	Uncharacterized protein; NESG, structure, structur	90.31
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	90.27
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	90.19
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	89.96
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	89.94
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	89.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	89.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	89.69
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	89.4
3k9i_A	117	BH0479 protein; putative protein binding protein,	89.38
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	89.33
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	89.27
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	89.22
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	89.16
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	89.05
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	88.75
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	88.68
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	88.61
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	88.57
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	88.29
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	88.28
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	87.96
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	87.89
3k9i_A	117	BH0479 protein; putative protein binding protein,	87.86
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	87.74
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	87.65
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	87.63
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	87.48
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	87.18
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	87.15
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	86.95
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	86.86
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	86.45
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	86.44
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	86.28
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	86.24
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	86.22
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	85.84
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	85.7
2kat_A	115	Uncharacterized protein; NESG, structure, structur	85.45
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	85.43
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	85.33
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	85.1
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	84.83
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	84.66
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	84.46
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	84.31
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	84.24
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	84.03
3u4t_A	272	TPR repeat-containing protein; structural genomics	83.91
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	83.73
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	83.63
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	83.55
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	83.52
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	83.22
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	82.94
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	82.62
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	82.2
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	81.89
3u4t_A	272	TPR repeat-containing protein; structural genomics	81.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	81.58
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	81.55
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	81.3
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	81.14
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	80.79
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	80.79
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	80.78
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	80.69
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	80.39
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	80.12
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	80.03

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.37  E-value=1.1e-12  Score=92.63  Aligned_cols=51  Identities=12%  Similarity=0.214  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLL  134 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~  134 (137)
                      .|..||+   ++|+.|++.|+++||.||..|.||++|+++|++||++|+++|+.
T Consensus        79 ~A~~~~~---~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A           79 KAAQYYS---KACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             HHHHHHH---HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHH---HHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence            4666776   56677777777777777777777777777777777777766653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.34  E-value=1.8e-12  Score=91.54  Aligned_cols=50  Identities=8%  Similarity=0.079  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCC
Q 032635           82 VQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLL  134 (137)
Q Consensus        82 A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~  134 (137)
                      |..||+   ++|+.|++.|+++||.||..|.||++|+.+|++||++||++|+.
T Consensus        44 A~~~~~---~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~   93 (138)
T 1klx_A           44 LFQYLS---KACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQ   93 (138)
T ss_dssp             HHHHHH---HHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHH---HHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCH
Confidence            999999   79999999999999999999999999999999999999999874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.04  E-value=2.1e-10  Score=94.46  Aligned_cols=52  Identities=13%  Similarity=0.150  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLL  134 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~  134 (137)
                      +.|..||+   ++|+.|++.||++||.||..|.||++|+.+|..||++|+++|..
T Consensus       339 ~~A~~~~~---~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~  390 (452)
T 3e4b_A          339 QKALDHLL---TAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP  390 (452)
T ss_dssp             HHHHHHHH---HHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHH---HHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence            35778887   68888888888888888888888888888888888888888764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.03  E-value=3.9e-10  Score=83.20  Aligned_cols=51  Identities=10%  Similarity=0.134  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDL  133 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~  133 (137)
                      +.|..||+   ++++.|++.|+++||.+|..|.||++|+.+|++||++|++.|.
T Consensus        70 ~~A~~~~~---~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A           70 PQARQLAE---KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             HHHHHHHH---HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred             HHHHHHHH---HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence            45888888   6888899999999999999999999999999999999998876

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.96  E-value=6.6e-10  Score=81.96  Aligned_cols=52  Identities=13%  Similarity=0.100  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHhhcCCC--ccccHHHHHHHHHHhhcCCCC
Q 032635           80 DCVQRWFQDTLREAKN-GDKAMEVLVGQMYLSGYG--VAEMKKRGMLGLRELPQVDLL  134 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~-GD~~AQ~~LG~MY~~G~G--V~qD~~KA~~Wf~KAAeqg~~  134 (137)
                      +.|..||+   ++++. |++.|+++||.||..|.|  |++|+.+|++||++|+++|+.
T Consensus       146 ~~A~~~~~---~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          146 VKASEYFK---GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             HHHHHHHH---HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHH---HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            46889999   78888 999999999999999998  999999999999999999874

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.94  E-value=6.9e-10  Score=91.38  Aligned_cols=50  Identities=16%  Similarity=0.244  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLL  134 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~  134 (137)
                      .|..||+   +++ .|++.|+++||.||..|.||++|+.+|++||++|+++|+.
T Consensus       305 ~A~~~~~---~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~  354 (452)
T 3e4b_A          305 AAEAHFE---KAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN  354 (452)
T ss_dssp             HHHHHHH---TTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred             HHHHHHH---HHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence            3556666   455 6666666666666666666666666666666666666654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.76  E-value=1.2e-08  Score=82.77  Aligned_cols=51  Identities=24%  Similarity=0.453  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDL  133 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~  133 (137)
                      +.|..||+   ++++.|++.|++.||.+|..|.||++|+.+|++||++|+++|+
T Consensus        60 ~~A~~~~~---~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~  110 (490)
T 2xm6_A           60 TQAMDWFR---RAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL  110 (490)
T ss_dssp             HHHHHHHH---HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHH---HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            45778888   6888888888888888888888888888888888888888775

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.72  E-value=2.1e-08  Score=81.44  Aligned_cols=52  Identities=21%  Similarity=0.257  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLL  134 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~  134 (137)
                      +.|..||+   ++++.|++.|+++||.+|..|.||++|+.+|+.||++|+++|+.
T Consensus        96 ~~A~~~~~---~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~  147 (490)
T 2xm6_A           96 AQAVIWYK---KAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRD  147 (490)
T ss_dssp             HHHHHHHH---HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHH---HHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence            45788888   68888899999999999988888888999999999888888753

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.44  E-value=1.7e-07  Score=69.20  Aligned_cols=49  Identities=12%  Similarity=0.166  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      .|..||+   ++++.|++.++++||.+|..|.|+..|+++|++||++|++.|
T Consensus       204 ~A~~~~~---~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          204 EALARYS---KACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHH---HHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHH---HHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            3555555   455555555555555555555555555555555555555544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.37  E-value=8.4e-07  Score=65.40  Aligned_cols=50  Identities=14%  Similarity=0.256  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..||+   ++++.|++.++++||.+|..|.|+..|+.+|+.||++|++.|
T Consensus        59 ~~A~~~~~---~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  108 (273)
T 1ouv_A           59 KKAASFYA---KACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK  108 (273)
T ss_dssp             HHHHHHHH---HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHH---HHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC
Confidence            34666666   566666777777777777776667777777777777766654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=94.27  E-value=0.13  Score=30.77  Aligned_cols=48  Identities=13%  Similarity=0.157  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..||+.+++. ...+..+.++||.+|..    ..++++|..+|++|.+.+
T Consensus        26 ~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~   73 (91)
T 1na3_A           26 DEAIEYYQKALEL-DPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELD   73 (91)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcC
Confidence            4677888853322 34689999999999985    468999999999998753

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.15  E-value=0.13  Score=34.30  Aligned_cols=54  Identities=13%  Similarity=0.019  Sum_probs=44.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCC
Q 032635           76 QVVSDCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLL  134 (137)
Q Consensus        76 ~vv~d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~  134 (137)
                      +++.+.+..+|+.+++ .+-.++.|.++||.+|+.    ..|+.+|+..|++..+++-.
T Consensus        22 ~~~~~~A~~~l~~AL~-~dp~~~rA~~~lg~~~~~----~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A           22 QAMTDEVSLLLEQALQ-LEPYNEAALSLIANDHFI----SFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             TCCCHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHH-HCcCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC
Confidence            3456788899986443 456899999999999996    58999999999999888643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=93.36  E-value=0.32  Score=29.91  Aligned_cols=48  Identities=0%  Similarity=-0.115  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.+++. .-.++.+.+++|.+|..    ..++++|+.+|++|.+.+
T Consensus        21 ~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A           21 REAVHCYDQLITA-QPQNPVGYSNKAMALIK----LGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhC
Confidence            4677888853332 34689999999999984    358999999999998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=92.75  E-value=0.32  Score=33.05  Aligned_cols=48  Identities=13%  Similarity=0.144  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.+++. .-.++.+.++||.+|..    ..++++|+.+|++|.+.+
T Consensus       124 ~~A~~~~~~~l~~-~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~  171 (184)
T 3vtx_A          124 DKAIEAYEKTISI-KPGFIRAYQSIGLAYEG----KGLRDEAVKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHh-cchhhhHHHHHHHHHHH----CCCHHHHHHHHHHHHhCC
Confidence            4577778743322 33688899999999884    468899999999987654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=92.34  E-value=0.15  Score=38.57  Aligned_cols=50  Identities=8%  Similarity=-0.003  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHHHc--CCHHHHHHHHHHhhc-CCCccc------cHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKN--GDKAMEVLVGQMYLS-GYGVAE------MKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~--GD~~AQ~~LG~MY~~-G~GV~q------D~~KA~~Wf~KAAeqg  132 (137)
                      +.|...|+   ++.+.  .+..|.++||..|.. |.-+|.      ++++|+.+|++|.+.+
T Consensus        63 ~eAi~~le---~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           63 QEAITKFE---EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHHHHHHH---HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHH---HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            57888888   45554  589999999999975 443555      8999999999998753

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=92.17  E-value=0.34  Score=29.81  Aligned_cols=48  Identities=10%  Similarity=0.148  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHH-HHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKA-MEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~-AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.+++ ..-.++. +.+++|.+|..    ..++++|+.+|++|.+.+
T Consensus        17 ~~A~~~~~~al~-~~p~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A           17 ENALQALEEFLQ-TEPVGKDEAYYLMGNAYRK----LGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHHHHH-HCSSTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH-HCCCcHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence            457788874322 2335788 99999999984    468999999999998654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=92.02  E-value=0.31  Score=31.17  Aligned_cols=46  Identities=7%  Similarity=0.068  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +.|..+|+.+++ ..-.++.+.++||.+|..    ..++++|+.+|++|.+
T Consensus        24 ~~A~~~~~~al~-~~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A           24 SRALALFEELVE-TDPDYVGTYYHLGKLYER----LDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             HHHHHHHHHHHH-HSTTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence            467888984332 223588999999999985    4689999999999875

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=91.84  E-value=0.44  Score=31.85  Aligned_cols=46  Identities=2%  Similarity=-0.008  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +.|..+|..+++. .-.++.+.++||.+|..    ..++.+|+.+|++|.+
T Consensus        25 ~~A~~~y~~Al~~-~p~~~~~~~nlg~~~~~----~~~~~~A~~~~~~al~   70 (127)
T 4gcn_A           25 EKAHVHYDKAIEL-DPSNITFYNNKAAVYFE----EKKFAECVQFCEKAVE   70 (127)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCCCHHHHHhHHHHHHH----hhhHHHHHHHHHHHHH
Confidence            4678899854332 34689999999999985    4699999999999975

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=91.73  E-value=0.66  Score=27.87  Aligned_cols=48  Identities=8%  Similarity=0.020  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|..+++. .-.+..+.+++|.+|..-    .++++|..+|++|.+.+
T Consensus        23 ~~A~~~~~~a~~~-~~~~~~~~~~~a~~~~~~----~~~~~A~~~~~~a~~~~   70 (112)
T 2kck_A           23 TESIDLFEKAIQL-DPEESKYWLMKGKALYNL----ERYEEAVDCYNYVINVI   70 (112)
T ss_dssp             HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhC
Confidence            3466666632221 234677778888877642    46788888888777653

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=91.68  E-value=0.18  Score=33.29  Aligned_cols=31  Identities=6%  Similarity=-0.068  Sum_probs=26.5

Q ss_pred             CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           97 DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        97 D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      ++.-|+.||..|+.    ..|+.+|..||+.|.+.
T Consensus         4 sa~dc~~lG~~~~~----~~~y~~A~~W~~~Al~~   34 (104)
T 2v5f_A            4 TAEDCFELGKVAYT----EADYYHTELWMEQALRQ   34 (104)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH----ccchHHHHHHHHHHHHh
Confidence            45678999999994    48999999999999874

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=91.40  E-value=0.49  Score=32.39  Aligned_cols=48  Identities=13%  Similarity=0.264  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.+++ ..-.++.+.++||.+|..    ..++++|+.+|++|.+.+
T Consensus        48 ~~A~~~~~~al~-~~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~   95 (150)
T 4ga2_A           48 DLAKKYICTYIN-VQERDPKAHRFLGLLYEL----EENTDKAVECYRRSVELN   95 (150)
T ss_dssp             HHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH----cCchHHHHHHHHHHHHhC
Confidence            467788874332 233689999999999884    468899999999987643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=91.32  E-value=0.29  Score=35.27  Aligned_cols=44  Identities=9%  Similarity=0.111  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      .|..+|+.+++..  .++.+.++||.+|..-    .++++|+.+|++|.+
T Consensus       136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~  179 (217)
T 2pl2_A          136 KAEASLKQALALE--DTPEIRSALAELYLSM----GRLDEALAQYAKALE  179 (217)
T ss_dssp             HHHHHHHHHHHHC--CCHHHHHHHHHHHHHH----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc--cchHHHHHHHHHHHHc----CCHHHHHHHHHHHHH
Confidence            4556666544433  5666666666666532    466666666666654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=90.56  E-value=0.69  Score=31.01  Aligned_cols=46  Identities=7%  Similarity=-0.100  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      .|..+|+.+++ ..-.++.+.++||.+|..    ..++++|+.+|++|.+.
T Consensus        65 ~A~~~~~~al~-~~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           65 RALDDCDTCIR-LDSKFIKGYIRKAACLVA----MREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHHHHHHHHHH-HCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-hhhhhhHHHHHHHHHHHH----CCCHHHHHHHHHHHHHH
Confidence            45566653222 133566677777777663    34667777777776553

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=90.31  E-value=0.79  Score=29.11  Aligned_cols=46  Identities=7%  Similarity=-0.068  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +.|..+|+.+++. .-.+..+.++||.+|..    ..++.+|..+|++|.+
T Consensus        36 ~~A~~~~~~al~~-~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~   81 (115)
T 2kat_A           36 DAALPHLRAALDF-DPTYSVAWKWLGKTLQG----QGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence            4577788743322 33578889999998874    4688899999988865

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.27  E-value=0.92  Score=28.88  Aligned_cols=31  Identities=16%  Similarity=0.059  Sum_probs=19.5

Q ss_pred             CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           96 GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        96 GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      .++.+.+++|.+|..    ..++++|..+|+++.+
T Consensus        97 ~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~  127 (148)
T 2dba_A           97 GDVKALYRRSQALEK----LGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             CCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence            456666667666653    3466667777766654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=90.19  E-value=0.92  Score=28.21  Aligned_cols=47  Identities=2%  Similarity=-0.156  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..+|+.+++. .-.+..+.+++|.+|..    ..++++|+.+|+++.+.
T Consensus        67 ~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           67 QLALKDCEECIQL-EPTFIKGYTRKAAALEA----MKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCCchHHHHHHHHHHHH----HhhHHHHHHHHHHHHHh
Confidence            3566677643322 23467788888887764    35778888888877653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=89.96  E-value=0.79  Score=32.25  Aligned_cols=47  Identities=11%  Similarity=-0.033  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      .|..+|..+++.....|..+.+++|.+|..    ..|+++|+.+|++|.+.
T Consensus        25 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~   71 (228)
T 4i17_A           25 VAFEKYSEYLKLTNNQDSVTAYNCGVCADN----IKKYKEAADYFDIAIKK   71 (228)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccCCCCcHHHHHHHHHHHH----hhcHHHHHHHHHHHHHh
Confidence            455666644333333566677777777663    35677777777776654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=89.94  E-value=1.5  Score=26.42  Aligned_cols=48  Identities=6%  Similarity=-0.302  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|..+++. ...+..+.+++|.+|..    ..++.+|..+|+++.+.+
T Consensus        55 ~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           55 QKAYEDGCKTVDL-KPDWGKGYSRKAAALEF----LNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHh-CcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHcC
Confidence            3566777743322 23578888999998875    358899999999887754

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=89.75  E-value=0.74  Score=30.21  Aligned_cols=47  Identities=11%  Similarity=0.185  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHc------CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           80 DCVQRWFQDTLREAKN------GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~------GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +.|..||+.+++....      ..+....+||.+|+.    ..|+.+|+..|++|.+
T Consensus        22 ~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~----~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A           22 YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ----QGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHh
Confidence            3578999987776643      346778899999983    3479999999999875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=89.72  E-value=0.88  Score=30.74  Aligned_cols=45  Identities=4%  Similarity=-0.244  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      .|..+|+.+++. .-.++.+.++||.+|..    ..++++|+.+|++|.+
T Consensus        63 ~A~~~~~~al~~-~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           63 KAAEDAELATVV-DPKYSKAWSRLGLARFD----MADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Confidence            455555532221 22456666666666653    2456666666666544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=89.69  E-value=0.72  Score=30.73  Aligned_cols=30  Identities=7%  Similarity=-0.016  Sum_probs=15.1

Q ss_pred             CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhh
Q 032635           96 GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELP  129 (137)
Q Consensus        96 GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAA  129 (137)
                      .++.+.++||.+|..    ..++.+|..+|++|.
T Consensus        84 ~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al  113 (142)
T 2xcb_A           84 NEPRFPFHAAECHLQ----LGDLDGAESGFYSAR  113 (142)
T ss_dssp             TCTHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence            345555555555542    234555555555543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=89.40  E-value=1.3  Score=26.87  Aligned_cols=47  Identities=11%  Similarity=0.127  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..+|..+++. ...+..+.+.||.+|..    ..++++|..+|+++.+.
T Consensus        60 ~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           60 DEAIEYYQKALEL-DPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHh
Confidence            3566777742221 23578888888888874    35788889988888664

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=89.38  E-value=0.069  Score=34.71  Aligned_cols=45  Identities=9%  Similarity=0.119  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      .|..+|+.+++. .-.++.+.++||.+|..    ..++++|+.+|++|.+
T Consensus        45 ~A~~~~~~al~~-~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~   89 (117)
T 3k9i_A           45 KAEAVLANGVKQ-FPNHQALRVFYAMVLYN----LGRYEQGVELLLKIIA   89 (117)
T ss_dssp             HHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence            455666532211 22466677777776663    3466677777766654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=89.33  E-value=1.1  Score=28.66  Aligned_cols=45  Identities=2%  Similarity=-0.120  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      .|..+|+.+++. .-.++.+.+++|.+|..    ..++++|+.+|++|.+
T Consensus        56 ~A~~~~~~al~~-~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           56 EAIADCNKAIEK-DPNFVRAYIRKATAQIA----VKEYASALETLDAART  100 (126)
T ss_dssp             HHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCCcHHHHHHHHHHHHH----HhCHHHHHHHHHHHHH
Confidence            455666632221 23467777777777763    2467777777777654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=89.27  E-value=0.96  Score=28.52  Aligned_cols=47  Identities=9%  Similarity=0.069  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKNGD---KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD---~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..+|+.+++. .-.+   +.+.++||.+|..    ..|+++|..+|+++.+.
T Consensus        56 ~~A~~~~~~~~~~-~p~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           56 QLAEAQFRDLVSR-YPTHDKAAGGLLKLGLSQYG----EGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHHHHHHH-CTTSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCCcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            4677888843322 1245   8889999999984    46899999999998764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=89.22  E-value=0.89  Score=31.68  Aligned_cols=47  Identities=6%  Similarity=-0.026  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..+|..+++. .-.+..+.+++|.+|..    ..++++|+.+|++|.+.
T Consensus       105 ~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A          105 PKAIDHASKVLKI-DKNNVKALYKLGVANMY----FGFLEEAKENLYKAASL  151 (198)
T ss_dssp             HHHHHHHHHHHHH-STTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CcccHHHHHHHHHHHHH----cccHHHHHHHHHHHHHH
Confidence            3566778754433 34689999999999984    46899999999999764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=89.16  E-value=0.85  Score=30.80  Aligned_cols=48  Identities=8%  Similarity=0.022  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.+++. .-.++.+.++||.+|..    ..++.+|+.+|++|.+.+
T Consensus        28 ~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~~   75 (164)
T 3sz7_A           28 SKAIDLYTQALSI-APANPIYLSNRAAAYSA----SGQHEKAAEDAELATVVD   75 (164)
T ss_dssp             HHHHHHHHHHHHH-STTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh-CCcCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence            4577888843322 24689999999999985    468999999999998654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=89.05  E-value=1.2  Score=27.28  Aligned_cols=49  Identities=10%  Similarity=0.130  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHc--CC----HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKN--GD----KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~--GD----~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|..++.....  ++    ..+.++||.+|..    ..|+.+|..+|+++.+.+
T Consensus        55 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~  109 (131)
T 1elr_A           55 NKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFK----EEKYKDAIHFYNKSLAEH  109 (131)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC
Confidence            3567788765554432  22    8899999999985    368999999999998743

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=88.75  E-value=1  Score=28.78  Aligned_cols=48  Identities=4%  Similarity=-0.060  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|..+++. .-.++.+.+++|.+|..    ..++.+|+.+|++|.+.+
T Consensus        21 ~~A~~~~~~al~~-~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~   68 (126)
T 3upv_A           21 PNAVKAYTEMIKR-APEDARGYSNRAAALAK----LMSFPEAIADCNKAIEKD   68 (126)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh-CCCChHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhC
Confidence            4577888843322 33689999999999985    468999999999998754

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=88.68  E-value=1.2  Score=30.03  Aligned_cols=46  Identities=9%  Similarity=-0.005  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      .|..+|..+++. .-.++.+.+++|.+|..    ..++.+|+.+|++|.+.
T Consensus        81 ~A~~~~~~al~~-~p~~~~a~~~~g~~~~~----~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           81 EAEETSSEVLKR-EETNEKALFRRAKARIA----AWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHH-STTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-CCcchHHHHHHHHHHHH----HhcHHHHHHHHHHHHhc
Confidence            566777754332 45789999999999984    36999999999998764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=88.61  E-value=0.89  Score=30.26  Aligned_cols=48  Identities=17%  Similarity=0.078  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.++. ..-.++.+.++||.+|..    ..++++|+.+|++|.+.+
T Consensus        35 ~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A           35 DDAQKIFQALCM-LDHYDARYFLGLGACRQS----LGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             HHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH-hCCccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcC
Confidence            456778874221 233689999999999984    469999999999998754

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=88.57  E-value=1.4  Score=28.12  Aligned_cols=45  Identities=13%  Similarity=0.076  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      .|..+|+.+++. .-.++.+.++||.+|..    ..++.+|..+|++|.+
T Consensus        61 ~A~~~~~~al~~-~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           61 QALADCRRALEL-DGQSVKAHFFLGQCQLE----MESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CchhHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence            455666643332 23577788888887764    2577788888877764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=88.29  E-value=1.6  Score=26.39  Aligned_cols=48  Identities=13%  Similarity=0.157  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|..+++. ...+..+.+.+|.+|..    ..++++|..+|+++.+.+
T Consensus        26 ~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A           26 DEAIEYYQKALEL-DPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH-CcCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHhC
Confidence            3567888743332 23688999999999985    368999999999997653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=88.28  E-value=1.4  Score=30.22  Aligned_cols=48  Identities=13%  Similarity=0.100  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|..+++. ...++.+.+++|.+|..    ..++++|+.+|++|.+..
T Consensus        54 ~~A~~~~~~al~~-~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           54 TEAEKAFTRSINR-DKHLAVAYFQRGMLYYQ----TEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh-CccchHHHHHHHHHHHH----cccHHHHHHHHHHHHHhC
Confidence            4577888743332 34789999999999985    468999999999998743

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=87.96  E-value=1.1  Score=29.89  Aligned_cols=48  Identities=6%  Similarity=0.044  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.+++ ..-.++.+.+++|.+|..    ..++.+|+.+|++|.+.+
T Consensus        30 ~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~~~   77 (126)
T 4gco_A           30 PTAMRHYNEAVK-RDPENAILYSNRAACLTK----LMEFQRALDDCDTCIRLD   77 (126)
T ss_dssp             HHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH-hCCCCHHHHHHHhhHHHh----hccHHHHHHHHHHHHHhh
Confidence            467788884332 234689999999999984    468999999999998754

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=87.89  E-value=1.3  Score=31.45  Aligned_cols=47  Identities=6%  Similarity=-0.111  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..+|+.++. ..-.++.+.++||.+|..    ..++++|+.+|++|.+.
T Consensus        53 ~eA~~~~~~al~-~~P~~~~~~~~lg~~~~~----~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           53 EEAEVFFRFLCI-YDFYNVDYIMGLAAIYQI----KEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             HHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH----HccHHHHHHHHHHHHhh
Confidence            356667763221 123577788888887763    35777888888777654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=87.86  E-value=1.5  Score=28.21  Aligned_cols=45  Identities=4%  Similarity=-0.017  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHc-----CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           81 CVQRWFQDTLREAKN-----GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~-----GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      .|..+|+   ++.+.     .++.+.++||.+|..    ..++++|+.+|++|.+.+
T Consensus         8 ~A~~~~~---~al~~~~~~p~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~   57 (117)
T 3k9i_A            8 QAVPYYE---KAIASGLQGKDLAECYLGLGSTFRT----LGEYRKAEAVLANGVKQF   57 (117)
T ss_dssp             CCHHHHH---HHHSSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHH---HHHHcCCCCccHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            4678888   45555     467899999999984    468999999999998754

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=87.74  E-value=0.98  Score=30.98  Aligned_cols=46  Identities=9%  Similarity=-0.041  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +.|..+|+.++.. .-.++.+.++||.+|..    ..++++|..+|++|.+
T Consensus        72 ~~A~~~~~~al~l-~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           72 DLAIHSYSYGAVM-DIXEPRFPFHAAECLLQ----XGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHHHHHHHHHHHH-STTCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCCCchHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence            3455666632211 23566777777777662    3566777777777654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=87.65  E-value=1.8  Score=25.84  Aligned_cols=49  Identities=2%  Similarity=-0.098  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCCCcc-ccHHHHHHHHHHhhcCCC
Q 032635           80 DCVQRWFQDTLREAKNG--DKAMEVLVGQMYLSGYGVA-EMKKRGMLGLRELPQVDL  133 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~G--D~~AQ~~LG~MY~~G~GV~-qD~~KA~~Wf~KAAeqg~  133 (137)
                      +.|..+|+.+++. .-.  +..+.++||.+|..    . .++++|..+|+++.+.+-
T Consensus        57 ~~A~~~~~~a~~~-~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           57 EEAVDCYNYVINV-IEDEYNKDVWAAKADALRY----IEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHHHHHHHHHHHT-SCCTTCHHHHHHHHHHHTT----CSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHh-CcccchHHHHHHHHHHHHH----HhCCHHHHHHHHHHHhhccc
Confidence            4677888843322 224  78999999999984    4 688999999999987653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=87.63  E-value=1.8  Score=26.36  Aligned_cols=47  Identities=4%  Similarity=-0.109  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..+|..+++. .-.++.+.+.+|.+|..    ..++.+|..+|+++.+.
T Consensus        63 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           63 AGAVQDCERAICI-DPAYSKAYGRMGLALSS----LNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CccCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhc
Confidence            3566677643322 33568888888888874    35788888888888764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=87.48  E-value=1.3  Score=29.28  Aligned_cols=48  Identities=10%  Similarity=0.052  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|...|+.+++ ..-.++.+.++||.+|..    ..++.+|+..|++|.+.+
T Consensus        34 ~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~   81 (121)
T 1hxi_A           34 AEAALAFEAVCQ-KEPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLD   81 (121)
T ss_dssp             HHHHHHHHHHHH-HSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH-HCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            356667763222 223578888888888874    357788888888876643

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=87.18  E-value=1.8  Score=29.18  Aligned_cols=48  Identities=4%  Similarity=0.020  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.+++. .-.+..+.++||.+|..    ..++++|..+|++|.+.+
T Consensus        98 ~~A~~~~~~al~~-~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           98 AQTRAMIDKALAL-DSNEITALMLLASDAFM----QANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH----cccHHHHHHHHHHHHhhC
Confidence            4566666632221 23567777777777764    357777777777776543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=87.15  E-value=1.8  Score=28.05  Aligned_cols=47  Identities=2%  Similarity=-0.161  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..+|..+++. ...++.+.+++|.+|..    ..++.+|..+|++|.+.
T Consensus        64 ~~A~~~~~~a~~~-~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~  110 (166)
T 1a17_A           64 GYALGDATRAIEL-DKKYIKGYYRRAASNMA----LGKFRAALRDYETVVKV  110 (166)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHh
Confidence            3566777643322 23577888888888774    24788888888887654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=86.95  E-value=2  Score=28.47  Aligned_cols=47  Identities=2%  Similarity=-0.014  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHcCC------HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           80 DCVQRWFQDTLREAKNGD------KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD------~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +.|..+|..+++....-.      ..+.++||..|..    ..|+.+|+++|++|.+
T Consensus        59 ~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~----~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           59 AECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK----QNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHh
Confidence            457778875544433211      3588889998873    4799999999999975

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=86.86  E-value=2.2  Score=26.40  Aligned_cols=46  Identities=11%  Similarity=0.062  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKN--GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~--GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.   +.+.  .+..+.+++|.+|..    ..++++|+.+|++|.+.+
T Consensus        33 ~~A~~~~~~---al~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~a~~~~   80 (133)
T 2lni_A           33 PQAMKHYTE---AIKRNPKDAKLYSNRAACYTK----LLEFQLALKDCEECIQLE   80 (133)
T ss_dssp             HHHHHHHHH---HHTTCTTCHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHH---HHHcCCCcHHHHHHHHHHHHH----hccHHHHHHHHHHHHHhC
Confidence            356778873   4443  589999999999974    468999999999998753

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=86.45  E-value=2.1  Score=25.72  Aligned_cols=48  Identities=4%  Similarity=0.037  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|..++. ....++.+.+++|.+|..    ..|+.+|..+|+++.+.+
T Consensus        21 ~~A~~~~~~~~~-~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~   68 (118)
T 1elw_A           21 DDALQCYSEAIK-LDPHNHVLYSNRSAAYAK----KGDYQKAYEDGCKTVDLK   68 (118)
T ss_dssp             HHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH-HCCCcHHHHHHHHHHHHh----hccHHHHHHHHHHHHHhC
Confidence            456778874322 233689999999999985    478999999999997654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=86.44  E-value=0.66  Score=29.57  Aligned_cols=34  Identities=21%  Similarity=0.187  Sum_probs=28.7

Q ss_pred             cCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           95 NGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        95 ~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      -.|+.+.++||.+|..    ..++++|+.+|++|.+.+
T Consensus         4 p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~   37 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLK----HDNASRALALFEELVETD   37 (100)
T ss_dssp             -CCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             ccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            3578899999999985    469999999999998754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=86.28  E-value=2.1  Score=26.23  Aligned_cols=47  Identities=6%  Similarity=-0.002  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..+|..+++. ...++.+.+++|.+|..    ..++.+|..+|+++.+.
T Consensus        21 ~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A           21 DTALKHYDKAKEL-DPTNMTYITNQAAVYFE----KGDYNKCRELCEKAIEV   67 (131)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCccHHHHHHHHHHHHH----hccHHHHHHHHHHHHhh
Confidence            4577788743322 23588999999999984    46899999999998764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=86.24  E-value=2.6  Score=26.44  Aligned_cols=47  Identities=13%  Similarity=0.121  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHc-CC----HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           80 DCVQRWFQDTLREAKN-GD----KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~-GD----~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +.|..+|+.++..++. ++    ..+.++||.+|..    ..++++|..+|++|.+
T Consensus        66 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~  117 (164)
T 3ro3_A           66 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL----LQDYEKAIDYHLKHLA  117 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHH
Confidence            3566777766666554 44    5677888888874    4678888888888764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=86.22  E-value=1.4  Score=28.03  Aligned_cols=48  Identities=8%  Similarity=0.064  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|..++.. .-.++.+.++||.+|..    ..++.+|+.+|++|.+.+
T Consensus        26 ~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~   73 (137)
T 3q49_B           26 PEAAACYGRAITR-NPLVAVYYTNRALCYLK----MQQPEQALADCRRALELD   73 (137)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhh-CcCcHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhC
Confidence            3566778743322 23578999999999984    578999999999998754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=85.84  E-value=1.3  Score=31.56  Aligned_cols=48  Identities=10%  Similarity=0.159  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.+++ ..-.++.+.++||.+|..    ..++++|+.+|++|.+.+
T Consensus        71 ~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~  118 (208)
T 3urz_A           71 DKAYLFYKELLQ-KAPNNVDCLEACAEMQVC----RGQEKDALRMYEKILQLE  118 (208)
T ss_dssp             HHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH-HCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Confidence            467788884222 123689999999999984    468999999999997643

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=85.70  E-value=1.6  Score=29.29  Aligned_cols=49  Identities=12%  Similarity=0.087  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHH-----------------HcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREA-----------------KNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAA-----------------e~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|..++...                 ...+..+.++||.+|..    ..++.+|+.+|++|.+.+
T Consensus        28 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----~~~~~~A~~~~~~al~~~   93 (162)
T 3rkv_A           28 KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN----IGDLHEAEETSSEVLKRE   93 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh----cCcHHHHHHHHHHHHhcC
Confidence            35677888655552                 44567899999999984    468999999999998754

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=85.45  E-value=1.7  Score=27.49  Aligned_cols=44  Identities=14%  Similarity=0.221  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHH--cCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           82 VQRWFQDTLREAK--NGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        82 A~~WF~~~lkAAe--~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +..+|+.   +.+  -.++.+.++||.+|..    ..++.+|+.+|++|.+.+
T Consensus         4 a~~~~~~---al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~   49 (115)
T 2kat_A            4 ITERLEA---MLAQGTDNMLLRFTLGKTYAE----HEQFDAALPHLRAALDFD   49 (115)
T ss_dssp             HHHHHHH---HHTTTCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHH---HHHhCCCcHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHC
Confidence            4566763   433  3689999999999985    368999999999998654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=85.43  E-value=1.8  Score=28.64  Aligned_cols=46  Identities=9%  Similarity=-0.034  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKN--GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~--GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|...|+.   +.+.  .++.+.++||.+|..    ..++.+|+.+|+++.+.+
T Consensus        68 ~~A~~~~~~---al~l~P~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           68 GLAIIALNH---ARMLDPKDIAVHAALAVSHTN----EHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHH---HHHHCTTCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHH---HHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            456777873   4443  689999999999984    468999999999998754

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=85.33  E-value=1.3  Score=31.34  Aligned_cols=47  Identities=11%  Similarity=0.010  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..+|+.+++ ..-.++.+.++||.+|..    ..++++|..+|++|.+.
T Consensus        87 ~~Ai~~~~~al~-l~P~~~~~~~~lg~~~~~----lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A           87 QQAADLYAVAFA-LGKNDYTPVFHTGQCQLR----LKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHHHHHHHHH-HSSSCCHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-hCCCCcHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            467788884222 234789999999999984    46899999999999764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.10  E-value=2.6  Score=26.69  Aligned_cols=45  Identities=4%  Similarity=-0.116  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHcC-C----HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKNG-D----KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~G-D----~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..+|+   ++.+.. +    ..+.+++|.+|..    ..++.+|+.+|+++.+.
T Consensus        45 ~~A~~~~~---~a~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           45 GGALAAYT---QALGLDATPQDQAVLHRNRAACHLK----LEDYDKAETEASKAIEK   94 (148)
T ss_dssp             HHHHHHHH---HHHTSCCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH---HHHHHcccchHHHHHHHHHHHHHHH----HccHHHHHHHHHHHHhh
Confidence            35678887   344443 3    7899999999975    46999999999998764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=84.83  E-value=3.7  Score=24.78  Aligned_cols=30  Identities=7%  Similarity=-0.006  Sum_probs=14.3

Q ss_pred             CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           97 DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        97 D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +..+.+.+|.+|..    ..++++|..+|+++.+
T Consensus        68 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~   97 (136)
T 2fo7_A           68 SAEAWYNLGNAYYK----QGDYDEAIEYYQKALE   97 (136)
T ss_dssp             CHHHHHHHHHHHHT----TTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Confidence            44455555555442    2345555555555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=84.66  E-value=3  Score=26.95  Aligned_cols=48  Identities=8%  Similarity=0.104  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|..+++ ....+..+.+++|.+|..    ..++.+|+.+|++|.+.+
T Consensus        30 ~~A~~~~~~al~-~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~a~~~~   77 (166)
T 1a17_A           30 ENAIKFYSQAIE-LNPSNAIYYGNRSLAYLR----TECYGYALGDATRAIELD   77 (166)
T ss_dssp             HHHHHHHHHHHH-HSTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH-hCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            356677874332 233589999999999985    468999999999998654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=84.46  E-value=1.8  Score=29.92  Aligned_cols=45  Identities=7%  Similarity=-0.051  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +.|..+|..+++..  .++.+.+.+|.+|..    ..++++|..+|++|.+
T Consensus        22 ~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~----~~~~~~A~~~~~~a~~   66 (258)
T 3uq3_A           22 DEAIEHYNKAWELH--KDITYLNNRAAAEYE----KGEYETAISTLNDAVE   66 (258)
T ss_dssp             HHHHHHHHHHHHHS--CCTHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh--ccHHHHHHHHHHHHH----cccHHHHHHHHHHHHH
Confidence            46778888766665  899999999999985    3689999999999876

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=84.31  E-value=1.8  Score=27.22  Aligned_cols=47  Identities=17%  Similarity=0.032  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHc-CCH----HHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           80 DCVQRWFQDTLREAKN-GDK----AMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~-GD~----~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +.|..+|..+++.+.. +|.    .+.++||.+|..    ..++.+|..+|++|.+
T Consensus        26 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~a~~   77 (164)
T 3ro3_A           26 RDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF----LGEFETASEYYKKTLL   77 (164)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Confidence            4577788876666654 553    588899999985    4689999999999865

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=84.24  E-value=3.6  Score=24.99  Aligned_cols=47  Identities=2%  Similarity=-0.002  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..+|..++.. ...++.+.+++|.+|..    ..++.+|..+|+++.+.
T Consensus        29 ~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~   75 (131)
T 2vyi_A           29 EAAVHFYGKAIEL-NPANAVYFCNRAAAYSK----LGNYAGAVQDCERAICI   75 (131)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHH----hhchHHHHHHHHHHHhc
Confidence            3566777743322 33588999999999985    46899999999999764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=84.03  E-value=2  Score=29.38  Aligned_cols=48  Identities=10%  Similarity=-0.022  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.++ ...-.++.+.++||.+|..    ..++++|+.+|++|.+.+
T Consensus        38 ~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A           38 EDAHXVFQALC-VLDHYDSRFFLGLGACRQA----MGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             HHHHHHHHHHH-HHCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHH-HcCcccHHHHHHHHHHHHH----HhhHHHHHHHHHHHHhcC
Confidence            35677887422 1234699999999999984    468999999999998653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=83.91  E-value=0.69  Score=32.80  Aligned_cols=46  Identities=7%  Similarity=0.016  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      .|..+|..+++ ..-.++.+..+||.+|..    ..|+++|+.+|++|.+.
T Consensus        92 ~A~~~~~~a~~-~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~  137 (272)
T 3u4t_A           92 LAIQQYQAAVD-RDTTRLDMYGQIGSYFYN----KGNFPLAIQYMEKQIRP  137 (272)
T ss_dssp             HHHHHHHHHHH-HSTTCTHHHHHHHHHHHH----TTCHHHHHHHHGGGCCS
T ss_pred             HHHHHHHHHHh-cCcccHHHHHHHHHHHHH----ccCHHHHHHHHHHHhhc
Confidence            45555553222 112355566666666553    24556666666655543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=83.73  E-value=2  Score=26.96  Aligned_cols=48  Identities=15%  Similarity=0.098  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHcCCH---HHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDK---AMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~---~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|...|..+++. .-++.   .+.+++|.+|..    ..|+.+|+.+|+++.+.+
T Consensus        19 ~~A~~~~~~~~~~-~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~~~~~~   69 (129)
T 2xev_A           19 DDASQLFLSFLEL-YPNGVYTPNALYWLGESYYA----TRNFQLAEAQFRDLVSRY   69 (129)
T ss_dssp             HHHHHHHHHHHHH-CSSSTTHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH-CCCCcccHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHC
Confidence            3566777743222 12455   799999999985    478999999999997643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=83.63  E-value=1.4  Score=36.15  Aligned_cols=49  Identities=6%  Similarity=0.104  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKN--GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~--GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.+++....  .++.+.++||.+|..    ..++++|..+|++|.+.+
T Consensus       238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~l~  288 (474)
T 4abn_A          238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKY----EESYGEALEGFSQAAALD  288 (474)
T ss_dssp             HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            5677888854443221  799999999999985    469999999999997643

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=83.55  E-value=2  Score=32.49  Aligned_cols=45  Identities=7%  Similarity=-0.000  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHH-HcCCH----HHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           81 CVQRWFQDTLREA-KNGDK----AMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        81 ~A~~WF~~~lkAA-e~GD~----~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      .|..+|+.++... +.||.    .+..+||.+|..     .|+++|+.+|++|.+
T Consensus        94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-----g~~~~A~~~~~~Al~  143 (307)
T 2ifu_A           94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-----LDLSKAVHLYQQAAA  143 (307)
T ss_dssp             GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHH
Confidence            4667777665554 34654    577899999975     589999999999875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=83.52  E-value=1.7  Score=30.26  Aligned_cols=48  Identities=10%  Similarity=-0.017  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHH-------cCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAK-------NGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe-------~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..+|..+++.++       .....+.++||.+|..    ..++.+|..+|++|.+.
T Consensus        60 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~al~~  114 (283)
T 3edt_B           60 KEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK----RGKYKEAEPLCKRALEI  114 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHH
Confidence            467788887666652       2356789999999984    46899999999998753

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=83.22  E-value=3.8  Score=24.73  Aligned_cols=48  Identities=13%  Similarity=0.135  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|..+++. ...+..+.+.+|.+|..    ..++.+|..+|+++.+.+
T Consensus        18 ~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~   65 (136)
T 2fo7_A           18 DEAIEYYQKALEL-DPRSAEAWYNLGNAYYK----QGDYDEAIEYYQKALELD   65 (136)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHc-CCcchhHHHHHHHHHHH----hcCHHHHHHHHHHHHHHC
Confidence            4567788743322 34688999999999875    358999999999987643

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=82.94  E-value=3.9  Score=28.55  Aligned_cols=31  Identities=13%  Similarity=0.044  Sum_probs=18.0

Q ss_pred             CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           96 GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        96 GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      .+..+.++||.+|..    ..++++|..+|+++.+
T Consensus       103 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~  133 (252)
T 2ho1_A          103 RNARVLNNYGGFLYE----QKRYEEAYQRLLEASQ  133 (252)
T ss_dssp             TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHH----HhHHHHHHHHHHHHHh
Confidence            355666666666553    3456666666666655

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=82.62  E-value=2.7  Score=34.41  Aligned_cols=48  Identities=4%  Similarity=-0.091  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.+++. .-.++.+.++||.+|..    ..|+++|..+|++|.+.+
T Consensus       120 ~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~~~  167 (474)
T 4abn_A          120 PEAEVLLSKAVKL-EPELVEAWNQLGEVYWK----KGDVTSAHTCFSGALTHC  167 (474)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----HTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhh-CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Confidence            5677888753332 34678899999998884    468899999999987764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=82.20  E-value=3.7  Score=27.58  Aligned_cols=48  Identities=15%  Similarity=0.333  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.+++. .-.++.+.+.||.+|..    ..++++|..+|.++....
T Consensus        22 ~~A~~~~~~al~~-~p~~~~~~~~la~~~~~----~~~~~~a~~~~~~~~~~~   69 (184)
T 3vtx_A           22 DGAIRAYKKVLKA-DPNNVETLLKLGKTYMD----IGLPNDAIESLKKFVVLD   69 (184)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcC
Confidence            4677888853332 33689999999999885    357888999998886543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=81.89  E-value=3.4  Score=30.67  Aligned_cols=47  Identities=2%  Similarity=-0.173  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHcC-C----HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           81 CVQRWFQDTLREAKNG-D----KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~G-D----~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      .|..+|+.+++.+..- +    +.+.+++|.+|..   ..+++++|.++|++|.+
T Consensus       214 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~---~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK---LEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH---TTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHH
Confidence            5778888777766543 2    7899999999983   22467899999999864

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=81.88  E-value=1.5  Score=31.08  Aligned_cols=47  Identities=9%  Similarity=0.200  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHc-CC------HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           82 VQRWFQDTLREAKN-GD------KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        82 A~~WF~~~lkAAe~-GD------~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      |...|+.+++..+. ++      ..+.+.||.+|..    ..|+++|+.+|++|.+.+
T Consensus       198 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~al~~~  251 (272)
T 3u4t_A          198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI----NRDKVKADAAWKNILALD  251 (272)
T ss_dssp             THHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence            56677765555533 22      3688999999985    489999999999998654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=81.58  E-value=4.5  Score=29.12  Aligned_cols=48  Identities=13%  Similarity=0.077  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.+++. .-.++.+.+++|.+|..    ..|+++|..+|++|.+.+
T Consensus       289 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~g~~~~A~~~~~~a~~~~  336 (359)
T 3ieg_A          289 VEAIRICSEVLQM-EPDNVNALKDRAEAYLI----EEMYDEAIQDYEAAQEHN  336 (359)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHh-CcccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcC
Confidence            4577888753332 34689999999999984    568999999999998764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=81.55  E-value=3  Score=29.88  Aligned_cols=48  Identities=10%  Similarity=0.169  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|...|+.+++ ..-.++.+.++||.+|..    ..++++|+.+|++|.+.+
T Consensus       101 ~~A~~~~~~al~-~~P~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~  148 (217)
T 2pl2_A          101 EQALSVLKDAER-VNPRYAPLHLQRGLVYAL----LGERDKAEASLKQALALE  148 (217)
T ss_dssp             HHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH-hCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHhcc
Confidence            467778874222 134689999999999984    468999999999998754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=81.30  E-value=2.3  Score=29.56  Aligned_cols=48  Identities=4%  Similarity=-0.096  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHH-------cCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAK-------NGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe-------~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..+|..++..++       .....+.++||.+|..    ..++++|..+|++|.+.
T Consensus       102 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  156 (283)
T 3edt_B          102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN----QGKAEEVEYYYRRALEI  156 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            457788886555542       2357789999999984    36899999999998764

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=81.14  E-value=4  Score=30.57  Aligned_cols=48  Identities=4%  Similarity=0.031  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHH-cCC----HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           80 DCVQRWFQDTLREAK-NGD----KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        80 d~A~~WF~~~lkAAe-~GD----~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +.|..+|+.+++... .||    +.+..+||.+|..-   -.++++|+.+|++|.+
T Consensus        94 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~---lg~~~~A~~~~~~Al~  146 (292)
T 1qqe_A           94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND---LHDYAKAIDCYELAGE  146 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHH
Confidence            457778876655543 366    45889999999851   1478999999999875

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=80.79  E-value=4.8  Score=27.68  Aligned_cols=48  Identities=8%  Similarity=0.049  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHcCC------HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKNGD------KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD------~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..+|..++.......      +.+.+.||.+|..    ..++.+|+.+|+++.+.
T Consensus        55 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~  108 (258)
T 3uq3_A           55 ETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK----LGDLKKTIEYYQKSLTE  108 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHhc
Confidence            457778876555444332      7899999999984    46999999999999763

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=80.79  E-value=2.9  Score=31.08  Aligned_cols=46  Identities=4%  Similarity=0.063  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHc--CC----HHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           81 CVQRWFQDTLREAKN--GD----KAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~--GD----~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      .|..+|+.+++.++.  ++    ..+.+++|.+|.    -..++++|..+|++|.+
T Consensus       173 ~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~----~~~~y~~Al~~~~kal~  224 (293)
T 2qfc_A          173 KGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY----LDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHH----HHhhHHHHHHHHHHHHH
Confidence            677888876655443  22    268999999998    45899999999999864

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=80.78  E-value=3.8  Score=32.01  Aligned_cols=47  Identities=9%  Similarity=-0.045  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      .|..+|..+++. .-.++.+.+++|.+|..    ..++.+|+.+|++|.+.+
T Consensus       248 ~A~~~~~~al~~-~p~~~~a~~~lg~a~~~----~g~~~~A~~~l~~al~l~  294 (338)
T 2if4_A          248 EAIGHCNIVLTE-EEKNPKALFRRGKAKAE----LGQMDSARDDFRKAQKYA  294 (338)
T ss_dssp             HHHHHHHHHHHH-CTTCHHHHHHHHHHHHT----TTCHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHC
Confidence            455667643322 34689999999999984    468999999999997653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=80.69  E-value=5  Score=25.85  Aligned_cols=29  Identities=3%  Similarity=-0.073  Sum_probs=13.0

Q ss_pred             CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhh
Q 032635           97 DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELP  129 (137)
Q Consensus        97 D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAA  129 (137)
                      +..+.+.+|.+|..    ..++++|..+|+++.
T Consensus       109 ~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~  137 (186)
T 3as5_A          109 NFNVRFRLGVALDN----LGRFDEAIDSFKIAL  137 (186)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH----cCcHHHHHHHHHHHH
Confidence            44444444444442    234444444444443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=80.39  E-value=5.4  Score=25.68  Aligned_cols=29  Identities=3%  Similarity=0.085  Sum_probs=13.7

Q ss_pred             CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhh
Q 032635           97 DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELP  129 (137)
Q Consensus        97 D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAA  129 (137)
                      ++.+.+.||.+|..    ..|+++|..+|+++.
T Consensus       143 ~~~~~~~la~~~~~----~~~~~~A~~~~~~~~  171 (186)
T 3as5_A          143 EGKVHRAIAFSYEQ----MGRHEEALPHFKKAN  171 (186)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Confidence            44455555555442    234555555555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=80.12  E-value=3.7  Score=28.75  Aligned_cols=29  Identities=10%  Similarity=-0.110  Sum_probs=13.9

Q ss_pred             CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhh
Q 032635           97 DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELP  129 (137)
Q Consensus        97 D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAA  129 (137)
                      +..+.++||.+|..    ..++.+|+.+|+++.
T Consensus       110 ~~~~~~~la~~~~~----~g~~~~A~~~~~~a~  138 (275)
T 1xnf_A          110 YNYAHLNRGIALYY----GGRDKLAQDDLLAFY  138 (275)
T ss_dssp             CTHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHH----hccHHHHHHHHHHHH
Confidence            44455555555443    234455555555544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=80.03  E-value=3.6  Score=32.02  Aligned_cols=47  Identities=9%  Similarity=-0.001  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      .|..+|+.+++. .-.++.+.+++|.+|..    ..++++|+.+|++|.+.+
T Consensus       214 ~A~~~~~~al~~-~p~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~  260 (336)
T 1p5q_A          214 AAIESCNKALEL-DSNNEKGLSRRGEAHLA----VNDFELARADFQKVLQLY  260 (336)
T ss_dssp             HHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh-CCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHC
Confidence            566777743332 34689999999999985    368999999999997643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	99.39
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.31
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	99.26
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.0
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.13
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	94.07
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	93.47
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	89.6
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	89.17
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	88.66
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	88.38
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	88.17
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	87.19
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	86.73
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	86.73
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	86.17
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	85.21
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	85.09
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	83.62
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	82.9
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	80.79
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	80.12

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=99.39  E-value=2.9e-13  Score=93.85  Aligned_cols=53  Identities=11%  Similarity=0.199  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLLP  135 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~~  135 (137)
                      ..|.+||+   ++|+.|++.|+++||.||.+|.||++|..+|++||++||++|+..
T Consensus        76 ~~A~~~~~---~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~  128 (133)
T d1klxa_          76 RKAAQYYS---KACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSED  128 (133)
T ss_dssp             HHHHHHHH---HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHh---hhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHH
Confidence            35889998   799999999999999999999999999999999999999998753

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.31  E-value=5.6e-13  Score=97.76  Aligned_cols=53  Identities=11%  Similarity=0.126  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLLP  135 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~~  135 (137)
                      +.|..||.   +++++|++.||++||.||..|+||++|..+|++||++||++|...
T Consensus       199 ~~A~~~~~---~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         199 KEALARYS---KACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             HHHHHHHH---HHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             hhhhhhHh---hhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            45889998   799999999999999999999999999999999999999998753

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=99.26  E-value=5.3e-12  Score=87.37  Aligned_cols=53  Identities=8%  Similarity=0.058  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLLP  135 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~~  135 (137)
                      +.+..||+   ++|+.|++.|+++||.||.+|.||++|..+|++||++||+.|++.
T Consensus        40 ~~a~~~~~---~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~   92 (133)
T d1klxa_          40 QKLFQYLS---KACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQD   92 (133)
T ss_dssp             HHHHHHHH---HHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHh---hhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCcch
Confidence            46889998   799999999999999999999999999999999999999998753

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.00  E-value=2.5e-10  Score=83.35  Aligned_cols=52  Identities=13%  Similarity=0.236  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDLL  134 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~~  134 (137)
                      ..|..||+   ++|+.||+.|+++||.||..|.||++|+.+|+.||+++++.+.+
T Consensus        19 ~~A~~~~~---kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~   70 (265)
T d1ouva_          19 TQAKKYFE---KACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS   70 (265)
T ss_dssp             HHHHHHHH---HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHH---HHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc
Confidence            36889999   79999999999999999999999999999999999999998864

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.033  Score=35.14  Aligned_cols=48  Identities=13%  Similarity=0.227  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHHHHHcC------CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           80 DCVQRWFQDTLREAKNG------DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~G------D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      +.|..||+++++.....      .+.+.++||..|+    -..|+++|+..|++|.+-
T Consensus        22 ~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~----~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_          22 YHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY----QQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH----hcCChHHHHHHHHHHHHh
Confidence            36889999877766543      2678999999998    447899999999999764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.026  Score=35.70  Aligned_cols=31  Identities=6%  Similarity=-0.042  Sum_probs=26.2

Q ss_pred             CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           97 DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        97 D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      .++.+|.||..|+.-    .|+.+|+.||++|.+.
T Consensus         4 saddc~~lG~~~~~~----g~y~~A~~~~~~Al~~   34 (95)
T d1tjca_           4 TAEDSFELGKVAYTE----ADYYHTELWMEQALRQ   34 (95)
T ss_dssp             CHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHH
Confidence            356799999999854    7999999999999753

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.47  E-value=0.095  Score=34.67  Aligned_cols=48  Identities=8%  Similarity=0.045  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|..++.. .-.++.+.+++|.+|..-    .++.+|+.+|++|.+.+
T Consensus        21 ~~Ai~~~~kal~~-~p~~~~~~~~lg~~y~~~----~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1          21 PEAAACYGRAITR-NPLVAVYYTNRALCYLKM----QQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHh-CCCCHHHHHhHHHHHhhh----hhhhhhhHHHHHHHHhC
Confidence            4677888843322 236899999999998743    58999999999997653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=89.60  E-value=0.35  Score=30.66  Aligned_cols=48  Identities=10%  Similarity=0.063  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.+++. .-.++.++++||.+|..    ..++.+|+.+|++|.+-+
T Consensus        33 ~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~----~~~~~~A~~~~~~al~~~   80 (112)
T d1hxia_          33 AEAALAFEAVCQK-EPEREEAWRSLGLTQAE----NEKDGLAIIALNHARMLD   80 (112)
T ss_dssp             HHHHHHHHHHHHH-STTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhhccc-ccccchhhhhhhhhhhh----hhhHHHhhcccccccccc
Confidence            3577888854332 23589999999999974    368999999999997643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.58  Score=30.78  Aligned_cols=50  Identities=16%  Similarity=0.123  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      .|...|+.+++ ..-.++.+++++|.+|.. .+...|+.+|+..|+++.+.+
T Consensus        17 ~Ae~~Y~~aL~-~~p~~~~~~~n~a~~L~~-s~~~~d~~~Ai~~l~~~l~~~   66 (122)
T d1nzna_          17 KFEKKFQSEKA-AGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKG   66 (122)
T ss_dssp             HHHHHHHHHHH-HSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHh-hCCCCHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhcc
Confidence            34466663221 123466777777776652 234456677777777766544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.66  E-value=0.69  Score=29.34  Aligned_cols=47  Identities=6%  Similarity=-0.303  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      .|...|..+++ ..-.++.+.+++|.+|..    ..++++|+..|++|.+.+
T Consensus        55 ~A~~~~~~al~-~~p~~~~~~~~~g~~~~~----~~~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          55 KAYEDGCKTVD-LKPDWGKGYSRKAAALEF----LNRFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHHHHHHHH-HCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHTTC
T ss_pred             ccchhhhhHHH-hccchhhHHHHHHHHHHH----ccCHHHHHHHHHHHHHhC
Confidence            45566664332 245789999999999883    468999999999988754

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.46  Score=33.32  Aligned_cols=29  Identities=10%  Similarity=0.094  Sum_probs=13.3

Q ss_pred             CHHHHHHHHHHhhcCCCccccHHHHHHHHHHhh
Q 032635           97 DKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELP  129 (137)
Q Consensus        97 D~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAA  129 (137)
                      ++.+.++||.+|..    ..++.+|+.+|++|.
T Consensus       205 ~~~~~~~lg~~~~~----~g~~~~A~~~~~~al  233 (323)
T d1fcha_         205 DYLLWNKLGATLAN----GNQSEEAVAAYRRAL  233 (323)
T ss_dssp             CHHHHHHHHHHHHH----TTCHHHHHHHHHHHH
T ss_pred             cccchhhhhhcccc----cccchhHHHHHHHHH
Confidence            44444445544442    234444444444444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=88.17  E-value=0.56  Score=31.74  Aligned_cols=48  Identities=10%  Similarity=0.052  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.+++ ..-.++.+.++||.+|.    -..|+++|+..|++|.+.+
T Consensus        54 ~~A~~~~~~al~-l~p~~~~a~~~lg~~~~----~~g~~~~A~~~~~~al~~~  101 (259)
T d1xnfa_          54 ALARNDFSQALA-IRPDMPEVFNYLGIYLT----QAGNFDAAYEAFDSVLELD  101 (259)
T ss_dssp             HHHHHHHHHHHH-HCCCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhc-cCCCCHHHHhhhchHHH----HHHHHHHhhhhhhHHHHHH
Confidence            467788875333 23468888888888887    3457888888888887643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.19  E-value=0.27  Score=34.21  Aligned_cols=45  Identities=13%  Similarity=0.140  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      .|..+|+.+++ .+..++.|.+++|.+|..    -.++++|+..|++|.+
T Consensus        54 ~A~~~~~kAl~-ldp~~~~a~~~~g~~~~~----~g~~~~A~~~~~kAl~   98 (192)
T d1hh8a_          54 EAEKAFTRSIN-RDKHLAVAYFQRGMLYYQ----TEKYDLAIKDLKEALI   98 (192)
T ss_dssp             HHHHHHHHHHH-HCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHH-HhhhhhhhHHHHHHHHHh----hccHHHHHHHHHHHHH
Confidence            45566663332 223466666666666642    3456666666666654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.73  E-value=0.41  Score=37.88  Aligned_cols=47  Identities=6%  Similarity=-0.011  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCCC
Q 032635           80 DCVQRWFQDTLREAKN--GDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVDL  133 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~--GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg~  133 (137)
                      +.|..||.   +|.+.  .+..++++||.+|..    ..|..+|++||.||...+.
T Consensus       169 ~~A~~~y~---~A~~l~P~~~~~~~~Lg~~~~~----~~~~~~A~~~y~ral~~~~  217 (497)
T d1ya0a1         169 SQAESYYR---HAAQLVPSNGQPYNQLAILASS----KGDHLTTIFYYCRSIAVKF  217 (497)
T ss_dssp             HHHHHHHH---HHHHHCTTBSHHHHHHHHHHHH----TTCHHHHHHHHHHHHSSSB
T ss_pred             HHHHHHHH---HHHHHCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Confidence            46778888   34444  678899999999874    4688899999999977554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.73  E-value=0.77  Score=29.55  Aligned_cols=46  Identities=4%  Similarity=-0.042  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +.|...|+.++.. .-.++.+.+++|..|.    ...++.+|+.+|++|.+
T Consensus        21 ~~Ai~~y~~al~~-~p~~~~~~~~~a~~~~----~~~~~~~A~~~~~~al~   66 (128)
T d1elra_          21 DTALKHYDKAKEL-DPTNMTYITNQAAVYF----EKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHH----HHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CcccHHHHHhHHHHHH----HcCchHHHHHHHHHHHH
Confidence            4677888854443 2358999999999998    45799999999999875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.17  E-value=0.62  Score=32.01  Aligned_cols=46  Identities=7%  Similarity=0.099  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHH--cCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAK--NGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe--~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|+.   +.+  -.++.+.++||.+|..    ..++++|+.+|++|.+.+
T Consensus       322 ~~A~~~~~~---al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~l~  369 (388)
T d1w3ba_         322 EEAVRLYRK---ALEVFPEFAAAHSNLASVLQQ----QGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             HHHHHHHHH---HTTSCTTCHHHHHHHHHHHHT----TTCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHH---HHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Confidence            456777773   333  2578888999988874    357888999999887653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.21  E-value=0.79  Score=29.91  Aligned_cols=44  Identities=14%  Similarity=0.116  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHH--cCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhc
Q 032635           80 DCVQRWFQDTLREAK--NGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQ  130 (137)
Q Consensus        80 d~A~~WF~~~lkAAe--~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAe  130 (137)
                      +.|..+|.   ++.+  -.++.|.++||.+|..    -.++++|+.+|++|.+
T Consensus        55 ~~Ai~~~~---~al~l~p~~~~a~~~lg~~~~~----l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          55 EQALADCR---RALELDGQSVKAHFFLGQCQLE----MESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHH---HHTTSCTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHH---HHHHhCCCcHHHHHHHHHHHHH----CCCHHHHHHHHHHHHH
Confidence            46778888   4554  3689999999999983    3689999999999875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.09  E-value=1.2  Score=29.15  Aligned_cols=46  Identities=7%  Similarity=0.031  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      .|..+|+.+++. .-.++.+.++||.+|..-    .++.+|+..|++|.+.
T Consensus        28 ~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~----~~~~~A~~~~~kal~~   73 (159)
T d1a17a_          28 NAIKFYSQAIEL-NPSNAIYYGNRSLAYLRT----ECYGYALGDATRAIEL   73 (159)
T ss_dssp             HHHHHHHHHHHH-STTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhcccc-chhhhhhhhhhHHHHHhc----cccchHHHHHHHHHHH
Confidence            355666643332 235666666777666643    4666666666666543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=83.62  E-value=1.4  Score=29.30  Aligned_cols=48  Identities=8%  Similarity=-0.025  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|..+|..+++. .-.+..+.+++|.+|..-    .++.+|..+|++|.+.+
T Consensus        81 ~~Ai~~~~~al~l-~p~~~~a~~~~~~~~~~l----~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          81 TKAVECCDKALGL-DSANEKGLYRRGEAQLLM----NEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSC
T ss_pred             ccchhhhhhhhhc-ccchHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhC
Confidence            3566788754442 468999999999999854    68999999999998653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.90  E-value=1.4  Score=30.25  Aligned_cols=44  Identities=11%  Similarity=0.111  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcCC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      .|...|.    .+..-++.+.++||.+|+    -..|+++|..+|++|.+.+
T Consensus        23 ~Al~~~~----~i~~~~~~~~~nlG~~~~----~~g~~~~A~~~~~kAl~ld   66 (192)
T d1hh8a_          23 GALDAFS----AVQDPHSRICFNIGCMYT----ILKNMTEAEKAFTRSINRD   66 (192)
T ss_dssp             HHHHHHH----TSSSCCHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHH----hcCCCCHHHHHHHHHHHH----HcCCchhHHHHHHHHHHHh
Confidence            4566675    345668899999999998    3469999999999998754

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.79  E-value=1  Score=29.83  Aligned_cols=52  Identities=10%  Similarity=-0.020  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-------CccccHHHHHHHHHHhhcCC
Q 032635           80 DCVQRWFQDTLREAKNGDKAMEVLVGQMYLSGY-------GVAEMKKRGMLGLRELPQVD  132 (137)
Q Consensus        80 d~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~-------GV~qD~~KA~~Wf~KAAeqg  132 (137)
                      +.|...|+.+++ .+-.++.|.++||.+|..--       -...++.+|..||++|.+.+
T Consensus        58 ~~Ai~~~~kAl~-l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          58 QEAITKFEEALL-IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             HHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH-hcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence            567888884332 23479999999999997521       12356789999999987643

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.12  E-value=1.5  Score=29.96  Aligned_cols=46  Identities=9%  Similarity=0.063  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCccccHHHHHHHHHHhhcC
Q 032635           81 CVQRWFQDTLREAKNGDKAMEVLVGQMYLSGYGVAEMKKRGMLGLRELPQV  131 (137)
Q Consensus        81 ~A~~WF~~~lkAAe~GD~~AQ~~LG~MY~~G~GV~qD~~KA~~Wf~KAAeq  131 (137)
                      .|...|+.+++. .-.++.+.++||.+|..    ..++++|..+|++|.+.
T Consensus        17 ~A~~~~~~~l~~-~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~   62 (388)
T d1w3ba_          17 AAERHCMQLWRQ-EPDNTGVLLLLSSIHFQ----CRRLDRSAHFSTLAIKQ   62 (388)
T ss_dssp             HHHHHHHHHHHH-CTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Confidence            456666643221 22567777888877764    35777788888777654