BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032637
         (136 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
          Length = 154

 Score = 30.4 bits (67), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 18  ELVKSVSDKHLDLLRPSARYSISKDTAD--REKGRYTLIRDPENFQFGIYDKPL 69
           E V+ +S KH ++        +  D+ D    + R TL++DPE  QF   D PL
Sbjct: 95  EAVQKLS-KHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKDAPL 147


>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
          Length = 153

 Score = 30.0 bits (66), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 18  ELVKSVSDKHLDLLRPSARYSISKDTAD--REKGRYTLIRDPENFQFGIYDKPL 69
           E V+ +S KH ++        +  D+ D    + R TL++DPE  QF   D PL
Sbjct: 94  EAVQKLS-KHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKDAPL 146


>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
 pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
 pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
 pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
          Length = 146

 Score = 28.9 bits (63), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 18  ELVKSVSDKHLDLLRPSARYSISKDTAD--REKGRYTLIRDPENFQFGIYDKP 68
           E V+ +S KH ++        +  D+ D    + R TL++DPE  QF   D P
Sbjct: 95  EAVQKLS-KHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKDAP 146


>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia
           Fasciculata
          Length = 146

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 18  ELVKSVSDKHLDLLRPSARYSISKDTAD--REKGRYTLIRDPENFQFGIYDKP 68
           E V+ +S KH ++        +  D+ D    + R TL++DPE  QF   D P
Sbjct: 95  EAVQKLS-KHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKDAP 146


>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
          Length = 146

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 18  ELVKSVSDKHLDLLRPSARYSISKDTAD--REKGRYTLIRDPENFQFGIYDKP 68
           E V+ +S KH ++        +  D+ D    + R TL++DPE  QF   D P
Sbjct: 95  EAVQKLS-KHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKDAP 146


>pdb|1H0H|A Chain A, Tungsten Containing Formate Dehydrogenase From
           Desulfovibrio Gigas
 pdb|1H0H|K Chain K, Tungsten Containing Formate Dehydrogenase From
           Desulfovibrio Gigas
          Length = 977

 Score = 28.1 bits (61), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)

Query: 44  ADREKGRYTLIRDPENFQF----GIYDKPLP 70
           AD+EKG+   I  PE + +    G  D PLP
Sbjct: 779 ADKEKGKRAFIMKPEGYAYLYGPGREDGPLP 809


>pdb|1TDQ|A Chain A, Structural Basis For The Interactions Between Tenascins
           And The C-Type Lectin Domains From Lecticans: Evidence
           For A Cross-Linking Role For Tenascins
          Length = 283

 Score = 26.6 bits (57), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 11  EGLKTGLELVKSVSDKHLDLLRPSARYSIS------KDTADREKGRYTL-IRDPENFQFG 63
           EG KT   L   +S   +  LRP +RY +S       + +D    ++T  I  P+N + G
Sbjct: 55  EGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVG 114


>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
          Length = 916

 Score = 26.2 bits (56), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 20  VKSVSDKHLDLLRPSARYSISKDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGW 78
           VK V D+ +   R   R   S + A RE   +  IR+ +  +  I+ + L C  CG+G+
Sbjct: 201 VKLVVDRLILETRNEHRILDSLELAMREGKGFVEIRNVDTGESKIFSENLMCPVCGIGF 259


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.145    0.470 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,798,091
Number of Sequences: 62578
Number of extensions: 153207
Number of successful extensions: 283
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 9
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)