BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032637
         (136 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8L9S1|R18A1_ARATH 60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA
           PE=2 SV=2
          Length = 158

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 66  DKPLPCFGCGVGWFSFLLGFVF-PLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACS 124
           +  LPC G G+GWF F++GF+F  + WY G F+        D RE+AG  A +IA    S
Sbjct: 87  EHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVT--SVDHREKAGYVACSIA----S 140

Query: 125 VVMLVIVVFRL 135
           VV L+ V+  +
Sbjct: 141 VVYLIAVMLGM 151


>sp|Q9M1Q1|FB215_ARATH F-box protein At3g62230 OS=Arabidopsis thaliana GN=At3g62230 PE=1
           SV=1
          Length = 461

 Score = 31.6 bits (70), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 11  EGLKTGLELVKSVSDKHLDLLRPSARYSISKDTADREKGRYTLIRDPENFQFGIYDKPLP 70
           EG+ T +E   S + KHL L     R+  + D A  E G   LI+ PE+F        L 
Sbjct: 105 EGVTTLIEFAVSKNVKHLFLDLSEPRWVTNNDAAQLEPG---LIKLPESFYKITSLVTLK 161

Query: 71  CFGC 74
            FGC
Sbjct: 162 LFGC 165


>sp|Q54B29|Y3934_DICDI Uncharacterized membrane protein DDB_G0293934 OS=Dictyostelium
            discoideum GN=DDB_G0293934 PE=4 SV=1
          Length = 1713

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 73   GCGVGWFSFLLGFVFPLMWYYGTFLYF 99
            G G  W  F+ GF  P+ W  G+F  F
Sbjct: 1410 GFGPAWTMFVFGFFIPICWIIGSFYLF 1436


>sp|Q3U3I9|ZN865_MOUSE Zinc finger protein 865 OS=Mus musculus GN=Znf865 PE=2 SV=1
          Length = 1058

 Score = 30.0 bits (66), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 96  FLYFGNHCRKDPRERAGLAASAIAAMACS 124
           FL F NH R +P E  G  A A+AA+ C+
Sbjct: 33  FLEFLNHQRFEPMELYGEHAKAVAALPCT 61


>sp|Q4R690|ZDH13_MACFA Palmitoyltransferase ZDHHC13 OS=Macaca fascicularis GN=ZDHHC13 PE=2
           SV=1
          Length = 622

 Score = 28.9 bits (63), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 93  YGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVV 132
           YG+F+Y+ NHC    +E  GL       +ACS  +L I++
Sbjct: 487 YGSFIYWSNHCATTFKED-GLWTYLNQIVACSPWVLYILM 525


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.143    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,885,040
Number of Sequences: 539616
Number of extensions: 2049309
Number of successful extensions: 5518
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5514
Number of HSP's gapped (non-prelim): 7
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)