Query 032637
Match_columns 136
No_of_seqs 56 out of 58
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 05:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dw3_A Intrinsic membrane prot 37.9 20 0.00068 25.1 2.4 19 81-99 38-56 (77)
2 1y29_A Huwentoxin-X; A double- 33.0 13 0.00043 21.9 0.6 7 68-74 15-21 (28)
3 2nrg_A Intrinsic membrane prot 27.5 33 0.0011 24.2 2.1 19 81-99 39-57 (82)
4 3s8f_C Cytochrome C oxidase po 24.5 83 0.0028 18.8 3.2 21 79-99 11-31 (34)
5 1bts_A BAND 3 anion transport 16.5 99 0.0034 17.2 2.2 15 112-126 6-20 (26)
6 1v54_M VIIIB, IX, cytochrome C 14.2 2.2E+02 0.0074 17.9 3.6 29 104-132 3-31 (46)
7 2k1k_A Ephrin type-A receptor 13.3 2.3E+02 0.0078 16.6 3.6 13 109-121 4-16 (38)
8 3l1l_A Arginine/agmatine antip 12.7 4.6E+02 0.016 19.9 6.4 8 103-110 376-383 (445)
9 3gia_A Uncharacterized protein 12.3 3.9E+02 0.014 20.3 5.3 53 76-129 185-242 (444)
10 2zxe_G FXYD10, phospholemman-l 11.7 1.8E+02 0.0061 20.1 2.9 31 84-114 23-58 (74)
No 1
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=37.90 E-value=20 Score=25.06 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=12.8
Q ss_pred HHHHHHHhHHHHHHHHHhh
Q 032637 81 FLLGFVFPLMWYYGTFLYF 99 (136)
Q Consensus 81 FllGFf~~ipWYvgafl~~ 99 (136)
|.+.|++...|++|.+|+-
T Consensus 38 ~~~~~~lv~l~~iG~~LPE 56 (77)
T 2dw3_A 38 FGTLLLIGFFRVVGRMLPI 56 (77)
T ss_dssp HHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHHHHhCch
Confidence 3444444588888888876
No 2
>1y29_A Huwentoxin-X; A double-stranded beta-sheet, ICK, knottin; NMR {Synthetic} SCOP: g.3.6.2
Probab=32.97 E-value=13 Score=21.85 Aligned_cols=7 Identities=43% Similarity=1.288 Sum_probs=6.1
Q ss_pred CCccccc
Q 032637 68 PLPCFGC 74 (136)
Q Consensus 68 rLPCcG~ 74 (136)
+.||||.
T Consensus 15 riPCCG~ 21 (28)
T 1y29_A 15 KIPCCGV 21 (28)
T ss_dssp SCCBSSC
T ss_pred ccccccc
Confidence 8999984
No 3
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=27.48 E-value=33 Score=24.19 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=12.9
Q ss_pred HHHHHHHhHHHHHHHHHhh
Q 032637 81 FLLGFVFPLMWYYGTFLYF 99 (136)
Q Consensus 81 FllGFf~~ipWYvgafl~~ 99 (136)
|.+.|++...|++|.+|+-
T Consensus 39 l~~~~~lv~l~~iG~~LPE 57 (82)
T 2nrg_A 39 FGTLLLIGFFRVVGRMLPI 57 (82)
T ss_dssp HHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHHHHHHHHhCch
Confidence 3344444588999988876
No 4
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=24.53 E-value=83 Score=18.75 Aligned_cols=21 Identities=14% Similarity=0.409 Sum_probs=16.6
Q ss_pred HHHHHHHHHhHHHHHHHHHhh
Q 032637 79 FSFLLGFVFPLMWYYGTFLYF 99 (136)
Q Consensus 79 flFllGFf~~ipWYvgafl~~ 99 (136)
..|++|.++-+.|..--++++
T Consensus 11 ~V~ilg~~I~i~W~~vf~lFl 31 (34)
T 3s8f_C 11 VILVLTLTILVFWLGVYAVFF 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHeeee
Confidence 468999999999986655554
No 5
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=16.47 E-value=99 Score=17.19 Aligned_cols=15 Identities=13% Similarity=0.277 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHH
Q 032637 112 GLAASAIAAMACSVV 126 (136)
Q Consensus 112 Gl~AcaIAa~v~tia 126 (136)
.+++++++.++|++.
T Consensus 6 ~i~s~ai~Gi~f~lf 20 (26)
T 1bts_A 6 LLISTAVQGILFALL 20 (26)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 577899999988763
No 6
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=14.24 E-value=2.2e+02 Score=17.85 Aligned_cols=29 Identities=14% Similarity=0.070 Sum_probs=23.7
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 032637 104 RKDPRERAGLAASAIAAMACSVVMLVIVV 132 (136)
Q Consensus 104 r~DpRErpGl~AcaIAa~v~tia~~Il~~ 132 (136)
.+-||++-|-+=.+|+-.+|.+.+++-.+
T Consensus 3 S~Pp~~~~s~~E~aigl~v~f~~~L~Pag 31 (46)
T 1v54_M 3 AKPAKTPTSPKEQAIGLSVTFLSFLLPAG 31 (46)
T ss_dssp BCCCSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 35689999999999998888888887654
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=13.35 E-value=2.3e+02 Score=16.65 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=5.7
Q ss_pred cchhHHHHHHHHH
Q 032637 109 ERAGLAASAIAAM 121 (136)
Q Consensus 109 ErpGl~AcaIAa~ 121 (136)
+.+|+-.-+||.+
T Consensus 4 ~~~~ls~GaIAGi 16 (38)
T 2k1k_A 4 VSRGLTGGEIVAV 16 (38)
T ss_dssp SSTTCCHHHHHHH
T ss_pred CCCCCCCCceeee
Confidence 3344444444444
No 8
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=12.74 E-value=4.6e+02 Score=19.86 Aligned_cols=8 Identities=0% Similarity=-0.259 Sum_probs=4.1
Q ss_pred ccCCcccc
Q 032637 103 CRKDPRER 110 (136)
Q Consensus 103 ~r~DpREr 110 (136)
.++.||+|
T Consensus 376 r~~~~~~r 383 (445)
T 3l1l_A 376 GHGHFGKA 383 (445)
T ss_dssp HSSSSGGG
T ss_pred hhcCcccc
Confidence 34455555
No 9
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=12.27 E-value=3.9e+02 Score=20.32 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHH--hhcccccCCccc---chhHHHHHHHHHHHHHHHHH
Q 032637 76 VGWFSFLLGFVFPLMWYYGTFL--YFGNHCRKDPRE---RAGLAASAIAAMACSVVMLV 129 (136)
Q Consensus 76 iGWflFllGFf~~ipWYvgafl--~~~~~~r~DpRE---rpGl~AcaIAa~v~tia~~I 129 (136)
-||..++.|+...+.=|.|.=. ....-. +||+. |.-..+..+..+++.+..++
T Consensus 185 ~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~-k~P~r~ip~ai~~~~~~~~~~y~~~~~~ 242 (444)
T 3gia_A 185 SAVSGMIFASAIFFLSYMGFGVITNASEHI-ENPKKNVPRAIFISILIVMFVYVGVAIS 242 (444)
T ss_dssp HHHHHHHHHHHHGGGGGTHHHHHHTTGGGB-SSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHHHc-cCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3676677776554444444322 221122 58865 34444555555555544443
No 10
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=11.71 E-value=1.8e+02 Score=20.06 Aligned_cols=31 Identities=13% Similarity=0.340 Sum_probs=8.0
Q ss_pred HHHHh-HHHHHHHHHhhc---cccc-CCcccchhHH
Q 032637 84 GFVFP-LMWYYGTFLYFG---NHCR-KDPRERAGLA 114 (136)
Q Consensus 84 GFf~~-ipWYvgafl~~~---~~~r-~DpRErpGl~ 114 (136)
|..|+ +..-+|.++++. +|.+ ..||.+||=.
T Consensus 23 GLifA~vLfi~GI~iilS~kcrCk~~qk~~~~p~d~ 58 (74)
T 2zxe_G 23 GLIVAAVLCVIGIIILLAGKCRCKFNQNKRTRSNSG 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHTTTC----------------
T ss_pred cchhHHHHHHHHHHHHHcCccccCCCCCCCCCCCcc
Confidence 44443 444455555552 2322 4677777644
Done!