BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032638
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W3F9|CSLD1_ORYSJ Cellulose synthase-like protein D1 OS=Oryza sativa subsp. japonica
GN=CSLD1 PE=2 SV=1
Length = 1127
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 57 TAASVAIAATVVGAAATLLVRRTKGSE--ETEIPLKTCEDC------GGSGICPECK 105
++A ++A +V + ++R +G++ E K C DC GG G+CP CK
Sbjct: 102 SSARATVSACMVQGCGSKIMRNGRGADILPCECDFKICVDCFTDAVKGGGGVCPGCK 158
>sp|A2ZAK8|CSLD1_ORYSI Cellulose synthase-like protein D1 OS=Oryza sativa subsp. indica
GN=CSLD1 PE=2 SV=2
Length = 1127
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 57 TAASVAIAATVVGAAATLLVRRTKGSE--ETEIPLKTCEDC------GGSGICPECK 105
++A ++A +V + ++R +G++ E K C DC GG G+CP CK
Sbjct: 102 SSARATVSACMVQGCGSKIMRNGRGADILPCECDFKICVDCFTDAVKGGGGVCPGCK 158
>sp|Q9HRY3|DNAJ_HALSA Chaperone protein DnaJ OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=dnaJ PE=3 SV=1
Length = 391
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 18/64 (28%)
Query: 57 TAASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGI--------CPECKGEG 108
T +V ++ G + + VRR + +C DCGGSG CP+C G+G
Sbjct: 140 TDLTVTLSEAYRGVSKQVTVRRPE----------SCADCGGSGYPEDADVRTCPQCDGQG 189
Query: 109 FVLK 112
V +
Sbjct: 190 VVTQ 193
>sp|B0R3H3|DNAJ_HALS3 Chaperone protein DnaJ OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=dnaJ PE=3 SV=1
Length = 391
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 18/64 (28%)
Query: 57 TAASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGI--------CPECKGEG 108
T +V ++ G + + VRR + +C DCGGSG CP+C G+G
Sbjct: 140 TDLTVTLSEAYRGVSKQVTVRRPE----------SCADCGGSGYPEDADVRTCPQCDGQG 189
Query: 109 FVLK 112
V +
Sbjct: 190 VVTQ 193
>sp|P53940|APJ1_YEAST J domain-containing protein APJ1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=APJ1 PE=1 SV=1
Length = 528
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 7/31 (22%)
Query: 90 KTCEDCGGSG-------ICPECKGEGFVLKK 113
+TC DCGG+G IC +C+G GF+ ++
Sbjct: 244 QTCADCGGAGVFVKNKDICQQCQGLGFIKER 274
>sp|Q05646|DNAJ_ERYRH Chaperone protein DnaJ OS=Erysipelothrix rhusiopathiae GN=dnaJ PE=2
SV=1
Length = 370
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
Query: 91 TCEDCGGSGI-----CPECKGEGFVLKKL 114
TC DCGGSG C EC G+GF K++
Sbjct: 189 TCPDCGGSGKTITKRCGECHGKGFNTKRV 217
>sp|Q9WZV3|DNAJ_THEMA Chaperone protein DnaJ OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=dnaJ PE=3 SV=1
Length = 369
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 90 KTCEDCGGSG-----ICPECKGEGFVLKKL 114
+TCE CGG+G C EC G G VL+K+
Sbjct: 197 RTCERCGGTGKIPREYCHECGGSGRVLRKV 226
>sp|B1LCI2|DNAJ_THESQ Chaperone protein DnaJ OS=Thermotoga sp. (strain RQ2) GN=dnaJ PE=3
SV=1
Length = 369
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 90 KTCEDCGGSG-----ICPECKGEGFVLKKL 114
+TCE CGG+G C EC G G VL+K+
Sbjct: 197 RTCERCGGTGKIPREYCHECGGSGRVLRKV 226
>sp|A5IIT4|DNAJ_THEP1 Chaperone protein DnaJ OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=dnaJ PE=3 SV=1
Length = 369
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 90 KTCEDCGGSG-----ICPECKGEGFVLKKL 114
+TCE CGG+G C EC G G VL+K+
Sbjct: 197 RTCERCGGTGKIPREYCHECGGSGRVLRKV 226
>sp|Q8XIT1|DNAJ_CLOPE Chaperone protein DnaJ OS=Clostridium perfringens (strain 13 / Type
A) GN=dnaJ PE=3 SV=1
Length = 387
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 5/27 (18%)
Query: 91 TCEDCGGSG-----ICPECKGEGFVLK 112
TC+ CGG+G CP+CKG+G V K
Sbjct: 199 TCDQCGGTGKVIEDPCPDCKGKGTVRK 225
>sp|B9KAB9|DNAJ_THENN Chaperone protein DnaJ OS=Thermotoga neapolitana (strain ATCC 49049
/ DSM 4359 / NS-E) GN=dnaJ PE=3 SV=1
Length = 370
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 5/30 (16%)
Query: 90 KTCEDCGGSG-----ICPECKGEGFVLKKL 114
+TC++CGG+G +C EC G G VL+++
Sbjct: 198 RTCDECGGTGRVPQELCHECGGSGRVLRRV 227
>sp|Q74H58|DNAJ_GEOSL Chaperone protein DnaJ OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=dnaJ PE=3 SV=1
Length = 373
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 9/37 (24%)
Query: 83 EETEIPL-KTCEDCGGSG--------ICPECKGEGFV 110
+E ++P K C DCGGSG +CP C+G G V
Sbjct: 139 KEIQVPYGKRCGDCGGSGAKPGTEPKVCPTCRGAGQV 175
>sp|Q7NBW0|DNAJ_MYCGA Chaperone protein DnaJ OS=Mycoplasma gallisepticum (strain R(low /
passage 15 / clone 2)) GN=dnaJ PE=3 SV=2
Length = 391
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 7/30 (23%)
Query: 91 TCEDCGGSG-------ICPECKGEGFVLKK 113
TC DC GSG C +C GEGF++++
Sbjct: 157 TCPDCNGSGSADGDVITCSDCNGEGFLVEQ 186
>sp|Q7VG06|DNAJ_HELHP Chaperone protein DnaJ OS=Helicobacter hepaticus (strain ATCC 51449
/ 3B1) GN=dnaJ PE=3 SV=1
Length = 385
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 13/33 (39%)
Query: 89 LKTCEDCGGSG-------------ICPECKGEG 108
L TC+DCGG G CP CKGEG
Sbjct: 162 LNTCKDCGGKGQVYMRQGFMTFAQTCPTCKGEG 194
>sp|A6L2I3|SYFA_BACV8 Phenylalanine--tRNA ligase alpha subunit OS=Bacteroides vulgatus
(strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=pheS PE=3
SV=1
Length = 344
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 79 TKGSEETEIPLKTCEDCGGSGICPECKGEGFV 110
T+ S E +I +C CGG G CP CKG G+V
Sbjct: 254 TEPSAEMDI---SCNICGGKG-CPFCKGTGWV 281
>sp|A6LA92|SYFA_PARD8 Phenylalanine--tRNA ligase alpha subunit OS=Parabacteroides
distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
GN=pheS PE=3 SV=1
Length = 339
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 79 TKGSEETEIPLKTCEDCGGSGICPECKGEGFV 110
T+ S E +I +C CGG G CP CKG G+V
Sbjct: 249 TEPSAEMDI---SCNICGGKG-CPFCKGTGWV 276
>sp|O27352|DNAJ_METTH Chaperone protein DnaJ OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=dnaJ PE=3 SV=1
Length = 376
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 17/41 (41%)
Query: 90 KTCEDCGGSG-----------------ICPECKGEGFVLKK 113
+TC+ CGGSG CP+C+GEG V++K
Sbjct: 163 RTCQTCGGSGQVRQVRNTILGQMMNITTCPDCQGEGTVVEK 203
>sp|A9KKT9|DNAJ_CLOPH Chaperone protein DnaJ OS=Clostridium phytofermentans (strain ATCC
700394 / DSM 18823 / ISDg) GN=dnaJ PE=3 SV=1
Length = 381
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 89 LKTCEDCGGSGI-----CPECKGEGFVLKK 113
++TC DC G+G CP+C G G++ +K
Sbjct: 189 VQTCPDCRGTGKIIKEKCPDCYGSGYISRK 218
>sp|A4J3N3|KCY_DESRM Cytidylate kinase OS=Desulfotomaculum reducens (strain MI-1) GN=cmk
PE=3 SV=1
Length = 222
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 55 PETAASVAIAATVVGAAATLLVRRTKGSEETEIPLKTCEDCGGSGICPECKGEGFVLKKL 114
PE +V+I A + G L+ R+ + +EE + + D G+ + P+ K + F L
Sbjct: 92 PEVTNNVSIVAKIAGVREVLVQRQREMAEEAGVVMD-GRDI-GTVVLPKAKAKFF----L 145
Query: 115 SEETAERARLTAKNM 129
+ ERAR AK M
Sbjct: 146 TASAEERARRRAKEM 160
>sp|F1MF74|MICA2_BOVIN Protein-methionine sulfoxide oxidase MICAL2 OS=Bos taurus GN=MICAL2
PE=3 SV=2
Length = 1101
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 49 TVSSALPETAASVAIAATVVGAAATLLV---------RRTKGSEETEIPLKTCE-DCGGS 98
TV S P +V ++ +GAAA +LV + S + E KT + GGS
Sbjct: 917 TVDSVSPARKLTVGKVSSGIGAAAEVLVNLYLNDHRPKTQATSPDLESVRKTFPLNVGGS 976
Query: 99 GICPECKGEGFVLKKLSEE 117
C CK +V+++LS E
Sbjct: 977 DTCYFCKKRVYVMERLSAE 995
>sp|B0SRF0|DNAJ_LEPBP Chaperone protein DnaJ OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / ATCC 23582 / Paris) GN=dnaJ PE=3 SV=1
Length = 375
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 9/34 (26%)
Query: 86 EIP-LKTCEDCGGSG--------ICPECKGEGFV 110
EIP L+TC DC GSG +CP+C G G V
Sbjct: 148 EIPRLETCVDCTGSGASKGSSPTVCPDCSGTGQV 181
>sp|B0SHT0|DNAJ_LEPBA Chaperone protein DnaJ OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / Ames) GN=dnaJ PE=3 SV=1
Length = 375
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 9/34 (26%)
Query: 86 EIP-LKTCEDCGGSG--------ICPECKGEGFV 110
EIP L+TC DC GSG +CP+C G G V
Sbjct: 148 EIPRLETCVDCTGSGASKGSSPTVCPDCSGTGQV 181
>sp|A0LJ41|DNAJ_SYNFM Chaperone protein DnaJ OS=Syntrophobacter fumaroxidans (strain DSM
10017 / MPOB) GN=dnaJ PE=3 SV=1
Length = 384
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 8/32 (25%)
Query: 89 LKTCEDCGGSG--------ICPECKGEGFVLK 112
L TCE+C GSG +CP C+G G V++
Sbjct: 144 LTTCEECNGSGAEPGTRETVCPVCQGSGQVVQ 175
>sp|Q3SIN3|DNAJ_THIDA Chaperone protein DnaJ OS=Thiobacillus denitrificans (strain ATCC
25259) GN=dnaJ PE=3 SV=1
Length = 372
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 90 KTCEDCGGSG-----ICPECKGEGFVLK 112
+TC CGG+G CP C GEG V K
Sbjct: 183 QTCPRCGGTGKMVSDPCPSCHGEGRVKK 210
>sp|Q04Y48|DNAJ_LEPBL Chaperone protein DnaJ OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain L550) GN=dnaJ PE=3 SV=1
Length = 371
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 9/36 (25%)
Query: 86 EIP-LKTCEDCGGSG--------ICPECKGEGFVLK 112
EIP L++C DC GSG CP+C G G + +
Sbjct: 145 EIPRLESCGDCNGSGAAKGSSPTTCPDCGGSGQIRR 180
>sp|Q04VC7|DNAJ_LEPBJ Chaperone protein DnaJ OS=Leptospira borgpetersenii serovar
Hardjo-bovis (strain JB197) GN=dnaJ PE=3 SV=1
Length = 371
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 9/36 (25%)
Query: 86 EIP-LKTCEDCGGSG--------ICPECKGEGFVLK 112
EIP L++C DC GSG CP+C G G + +
Sbjct: 145 EIPRLESCGDCNGSGAAKGSSPTTCPDCGGSGQIRR 180
>sp|Q316U7|DNAJ_DESDG Chaperone protein DnaJ OS=Desulfovibrio desulfuricans (strain G20)
GN=dnaJ PE=3 SV=1
Length = 375
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 10/44 (22%)
Query: 80 KGSEET-EIPLK-TCEDCGGSG--------ICPECKGEGFVLKK 113
+G E T IP TC DC GSG CP+C G G V+++
Sbjct: 135 RGDEVTLRIPKNVTCPDCSGSGAAPGTQPETCPQCGGSGQVVRQ 178
>sp|P28903|NRDD_ECOLI Anaerobic ribonucleoside-triphosphate reductase OS=Escherichia coli
(strain K12) GN=nrdD PE=1 SV=2
Length = 712
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 85 TEIPLKTCEDCGGSGICPECKGEGFVLKKLSEETAERARLTAK 127
T P+ C +CG +G EC +GF K A R +T +
Sbjct: 637 TNTPIDECYECGFTGEF-ECTSKGFTCPKCGNHDASRVSVTRR 678
>sp|A5N6M3|DNAJ_CLOK5 Chaperone protein DnaJ OS=Clostridium kluyveri (strain ATCC 8527 /
DSM 555 / NCIMB 10680) GN=dnaJ PE=3 SV=1
Length = 379
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 87 IPLKTCEDCGGSGI-----CPECKGEGFVLK 112
+ + TC+ CGG G C EC+G+G V K
Sbjct: 186 VTMTTCDKCGGRGTIIKNPCEECRGKGIVRK 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,068,434
Number of Sequences: 539616
Number of extensions: 1409031
Number of successful extensions: 4921
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 4835
Number of HSP's gapped (non-prelim): 138
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)