Query 032638
Match_columns 136
No_of_seqs 13 out of 15
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 05:56:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lcz_A YCZA, inhibitor of trap 97.1 0.00019 6.7E-09 46.0 1.8 27 88-114 8-39 (53)
2 2bx9_A Anti-trap, AT, tryptoph 97.0 0.00023 7.8E-09 45.7 1.7 26 88-113 8-38 (53)
3 1exk_A DNAJ protein; extended 96.5 0.00087 3E-08 42.9 1.7 12 100-111 52-63 (79)
4 1exk_A DNAJ protein; extended 96.4 0.0013 4.5E-08 42.1 1.8 25 88-112 10-42 (79)
5 2ctt_A DNAJ homolog subfamily 96.2 0.0021 7.3E-08 43.6 2.0 10 101-110 84-93 (104)
6 2ctt_A DNAJ homolog subfamily 95.7 0.0046 1.6E-07 42.0 2.2 21 90-110 29-57 (104)
7 1nlt_A Protein YDJ1, mitochond 94.9 0.012 3.9E-07 45.8 2.2 11 101-111 83-93 (248)
8 1nlt_A Protein YDJ1, mitochond 94.3 0.02 6.8E-07 44.4 2.3 25 88-112 79-110 (248)
9 2r6f_A Excinuclease ABC subuni 85.1 0.36 1.2E-05 45.2 2.1 24 88-111 266-304 (972)
10 2ygr_A Uvrabc system protein A 83.7 0.53 1.8E-05 44.1 2.6 23 89-111 275-313 (993)
11 3pih_A Uvrabc system protein A 83.4 0.49 1.7E-05 43.5 2.2 24 88-111 248-286 (916)
12 3lxf_A Ferredoxin; iron, iron- 72.8 1.3 4.3E-05 29.9 1.2 14 93-106 37-50 (104)
13 1b9r_A Protein (terpredoxin); 72.7 1.4 4.7E-05 29.1 1.3 14 93-106 37-50 (105)
14 2kdx_A HYPA, hydrogenase/ureas 72.2 3.4 0.00011 28.5 3.3 31 84-114 68-114 (119)
15 1uwm_A Ferredoxin VI, FDVI; el 70.5 1.5 5.1E-05 28.9 1.1 14 93-106 37-50 (106)
16 2y5c_A Adrenodoxin-like protei 70.4 1.5 5.1E-05 29.3 1.1 14 93-106 41-54 (109)
17 2bt6_A Adrenodoxin 1; rutheniu 70.0 1.5 5.1E-05 29.1 1.1 14 93-106 44-57 (108)
18 3n9z_C Adrenodoxin; cytochrome 69.9 1.7 5.8E-05 30.6 1.4 14 93-106 43-56 (123)
19 1xlq_A Putidaredoxin, PDX; [2F 69.6 1.6 5.6E-05 28.7 1.2 14 93-106 37-50 (106)
20 1l5p_A Ferredoxin; [2Fe-2S] cl 68.7 1.8 6E-05 28.2 1.2 15 93-107 36-50 (93)
21 3ah7_A [2Fe-2S]ferredoxin; [2F 65.4 2.2 7.6E-05 28.5 1.2 15 93-107 40-54 (113)
22 3hui_A Ferredoxin; cytochrome 64.6 2.2 7.6E-05 30.2 1.1 14 93-106 58-71 (126)
23 2gmg_A Hypothetical protein PF 62.6 3.5 0.00012 29.9 1.9 24 85-108 63-94 (105)
24 2wlb_A ETP1-FD, electron trans 62.1 2.7 9.3E-05 27.5 1.1 14 93-106 39-52 (103)
25 1ltl_A DNA replication initiat 59.2 4.3 0.00015 31.5 1.9 22 90-111 135-169 (279)
26 1i7h_A Ferredoxin; 2Fe-2S,elec 54.9 4.3 0.00015 27.1 1.1 15 93-107 40-54 (111)
27 2vf7_A UVRA2, excinuclease ABC 52.4 5 0.00017 36.6 1.4 15 98-112 148-162 (842)
28 4bbr_M Transcription initiatio 50.8 4.9 0.00017 32.5 1.0 22 89-113 21-54 (345)
29 2lcq_A Putative toxin VAPC6; P 43.8 12 0.00041 26.5 2.1 24 89-115 132-162 (165)
30 2iqj_A Stromal membrane-associ 43.0 3.9 0.00013 29.8 -0.6 37 87-123 25-84 (134)
31 1jq4_A Methane monooxygenase c 40.4 10 0.00035 24.5 1.2 17 93-110 40-59 (98)
32 2bw2_A Bypass of forespore C; 39.6 9.3 0.00032 28.7 1.0 13 98-110 63-75 (140)
33 2r6f_A Excinuclease ABC subuni 38.0 11 0.00038 35.4 1.4 21 89-109 753-787 (972)
34 2vf7_A UVRA2, excinuclease ABC 36.6 12 0.00041 34.1 1.4 21 89-109 638-672 (842)
35 3k1f_M Transcription initiatio 36.3 14 0.00047 29.7 1.5 23 88-113 20-54 (197)
36 3jyw_9 60S ribosomal protein L 35.6 6.7 0.00023 26.7 -0.3 21 85-105 22-51 (72)
37 3zyy_X Iron-sulfur cluster bin 35.0 12 0.00042 33.4 1.2 14 93-106 36-49 (631)
38 2ks1_B Epidermal growth factor 34.7 61 0.0021 19.9 4.0 30 52-81 11-40 (44)
39 2o03_A Probable zinc uptake re 32.4 12 0.0004 25.5 0.5 8 98-105 123-130 (131)
40 3eyy_A Putative iron uptake re 32.0 8.2 0.00028 27.0 -0.4 9 98-106 130-138 (145)
41 3j20_Y 30S ribosomal protein S 31.7 16 0.00055 22.6 1.0 12 86-97 16-27 (50)
42 2pia_A Phthalate dioxygenase r 31.5 15 0.00053 27.9 1.1 12 94-106 271-282 (321)
43 2bx2_L Ribonuclease E, RNAse E 31.1 14 0.00047 32.4 0.8 12 100-111 410-421 (517)
44 2crr_A Stromal membrane-associ 30.9 9 0.00031 28.1 -0.3 37 88-124 28-87 (141)
45 3izc_m 60S ribosomal protein R 30.6 15 0.00053 26.0 0.9 23 83-105 30-61 (92)
46 2olm_A Nucleoporin-like protei 30.5 6.8 0.00023 28.8 -1.0 19 88-106 24-53 (140)
47 2k5c_A Uncharacterized protein 30.1 13 0.00046 26.8 0.5 22 100-122 53-74 (95)
48 1doi_A 2Fe-2S ferredoxin; halo 29.2 19 0.00064 25.3 1.1 12 94-106 62-73 (128)
49 2crw_A ARF GAP 3, ADP-ribosyla 29.0 11 0.00036 28.3 -0.2 19 88-106 28-57 (149)
50 4a17_Y RPL37A, 60S ribosomal p 27.9 15 0.00051 26.7 0.4 23 83-105 30-61 (103)
51 3k7a_M Transcription initiatio 27.7 27 0.00094 27.7 2.0 22 88-112 20-53 (345)
52 1vf5_F Protein PET M; photosyn 27.5 1E+02 0.0036 18.5 4.1 26 57-82 7-32 (35)
53 3ir9_A Peptide chain release f 27.2 41 0.0014 24.7 2.7 27 98-124 103-131 (166)
54 2owa_A Arfgap-like finger doma 26.8 8.9 0.00031 28.2 -1.0 19 88-106 35-64 (138)
55 2ygr_A Uvrabc system protein A 26.2 22 0.00075 33.4 1.3 20 90-109 772-805 (993)
56 3a43_A HYPD, hydrogenase nicke 26.1 72 0.0024 22.7 3.8 14 85-98 66-79 (139)
57 1dcq_A PYK2-associated protein 25.9 8.4 0.00029 28.5 -1.3 19 88-106 16-45 (278)
58 2apo_B Ribosome biogenesis pro 25.5 29 0.001 22.7 1.4 22 89-110 6-30 (60)
59 2p57_A GTPase-activating prote 25.1 10 0.00035 28.4 -1.0 20 87-106 35-65 (144)
60 1h7b_A Anaerobic ribonucleotid 24.8 17 0.00058 32.1 0.2 22 85-106 536-566 (605)
61 3d00_A Tungsten formylmethanof 24.6 14 0.00047 28.0 -0.3 23 87-109 161-189 (191)
62 1iue_A Ferredoxin; electron tr 24.1 27 0.00094 22.5 1.1 12 94-106 38-49 (98)
63 1vyk_A Oxygen-evolving enhance 23.9 56 0.0019 24.4 2.9 24 106-129 35-59 (149)
64 1iij_A ERBB-2 receptor protein 23.9 61 0.0021 19.4 2.6 10 63-72 10-19 (35)
65 3mwm_A ZUR, putative metal upt 23.7 9.8 0.00034 26.4 -1.2 9 98-106 127-135 (139)
66 3o47_A ADP-ribosylation factor 23.7 11 0.00039 29.0 -0.9 19 88-106 36-65 (329)
67 2gai_A DNA topoisomerase I; zi 23.4 18 0.00062 31.7 0.2 17 88-105 555-579 (633)
68 4ets_A Ferric uptake regulatio 23.3 19 0.00064 25.8 0.2 10 98-107 147-156 (162)
69 3agx_A DNAJ homolog subfamily 23.2 23 0.0008 25.9 0.7 12 101-112 30-41 (181)
70 2gnr_A Conserved hypothetical 23.1 30 0.001 25.0 1.3 31 85-115 43-78 (145)
71 1pft_A TFIIB, PFTFIIBN; N-term 22.9 34 0.0012 20.1 1.3 11 101-111 8-18 (50)
72 1dl6_A Transcription factor II 22.0 34 0.0012 21.4 1.2 11 90-100 12-22 (58)
73 2l5u_A Chromodomain-helicase-D 21.9 33 0.0011 21.2 1.1 13 97-109 48-60 (61)
74 1a70_A Ferredoxin; iron-sulfur 21.9 31 0.0011 22.2 1.0 12 94-106 38-49 (97)
75 1awd_A Ferredoxin; electron tr 21.6 32 0.0011 22.0 1.1 12 94-106 36-47 (94)
76 1wri_A Ferredoxin II, ferredox 21.0 34 0.0012 21.9 1.1 12 94-106 36-47 (93)
77 2avu_E Flagellar transcription 20.8 43 0.0015 26.1 1.8 33 72-107 120-163 (192)
78 3iz5_m 60S ribosomal protein L 20.7 21 0.00071 25.3 -0.0 23 83-105 30-61 (92)
79 2aus_D NOP10, ribosome biogene 20.4 48 0.0017 21.7 1.7 22 89-110 5-29 (60)
No 1
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=97.07 E-value=0.00019 Score=45.98 Aligned_cols=27 Identities=44% Similarity=1.048 Sum_probs=23.5
Q ss_pred cccccccCCCccC-----CCCccCcceeeecC
Q 032638 88 PLKTCEDCGGSGI-----CPECKGEGFVLKKL 114 (136)
Q Consensus 88 ~~k~Ce~C~GsGi-----CpeCkGEGFVlK~L 114 (136)
-...|++|+|+|- |+.|+|.|.|.++-
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~~~ 39 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVILTAQ 39 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEECHH
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEEEEe
Confidence 3568999999997 99999999998764
No 2
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=97.03 E-value=0.00023 Score=45.66 Aligned_cols=26 Identities=35% Similarity=0.924 Sum_probs=22.7
Q ss_pred cccccccCCCcc-----CCCCccCcceeeec
Q 032638 88 PLKTCEDCGGSG-----ICPECKGEGFVLKK 113 (136)
Q Consensus 88 ~~k~Ce~C~GsG-----iCpeCkGEGFVlK~ 113 (136)
-...|+.|+|+| .||.|+|.|.|.++
T Consensus 8 ~~~~C~~C~GsG~~~~~~C~~C~G~G~v~~~ 38 (53)
T 2bx9_A 8 LEVACPKCERAGEIEGTPCPACSGKGVILTA 38 (53)
T ss_dssp HEEECTTTTTSSEETTEECTTTTTSSEEECH
T ss_pred ccccCCCCcceeccCCCCCccCCCCccEEEE
Confidence 356899999999 69999999999873
No 3
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=96.54 E-value=0.00087 Score=42.94 Aligned_cols=12 Identities=42% Similarity=1.328 Sum_probs=6.6
Q ss_pred CCCCccCcceee
Q 032638 100 ICPECKGEGFVL 111 (136)
Q Consensus 100 iCpeCkGEGFVl 111 (136)
.||.|+|.|.+.
T Consensus 52 ~C~~C~G~G~~~ 63 (79)
T 1exk_A 52 TCPHCQGRGTLI 63 (79)
T ss_dssp ECTTTTTSSEEC
T ss_pred ECcCCCCccEEC
Confidence 455555555554
No 4
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=96.37 E-value=0.0013 Score=42.06 Aligned_cols=25 Identities=48% Similarity=1.115 Sum_probs=19.7
Q ss_pred cccccccCCCcc--------CCCCccCcceeee
Q 032638 88 PLKTCEDCGGSG--------ICPECKGEGFVLK 112 (136)
Q Consensus 88 ~~k~Ce~C~GsG--------iCpeCkGEGFVlK 112 (136)
..+.|+.|.|+| .||.|+|.|.++.
T Consensus 10 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~ 42 (79)
T 1exk_A 10 TLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQM 42 (79)
T ss_dssp CEEECGGGTTTSBCSSSCCEECTTTTTSSEEEE
T ss_pred cceECCCCcccccCCCccCCCCCCCcCeEEEEE
Confidence 346788888888 5888998888764
No 5
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.15 E-value=0.0021 Score=43.62 Aligned_cols=10 Identities=40% Similarity=1.089 Sum_probs=4.5
Q ss_pred CCCccCccee
Q 032638 101 CPECKGEGFV 110 (136)
Q Consensus 101 CpeCkGEGFV 110 (136)
|+.|+|.|++
T Consensus 84 C~~C~G~G~v 93 (104)
T 2ctt_A 84 CVVCRGAGQA 93 (104)
T ss_dssp CSSSSSCSEE
T ss_pred CCCCCCeeEE
Confidence 4444444444
No 6
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.74 E-value=0.0046 Score=41.95 Aligned_cols=21 Identities=48% Similarity=1.142 Sum_probs=10.4
Q ss_pred cccccCCCcc--------CCCCccCccee
Q 032638 90 KTCEDCGGSG--------ICPECKGEGFV 110 (136)
Q Consensus 90 k~Ce~C~GsG--------iCpeCkGEGFV 110 (136)
+.|+.|.|+| .||.|+|.|.+
T Consensus 29 ~~C~~C~G~G~~~g~~~~~C~~C~G~G~~ 57 (104)
T 2ctt_A 29 DTCERCNGKGNEPGTKVQHCHYCGGSGME 57 (104)
T ss_dssp EECSSSSSSSSCTTCCCEECSSSSSSCEE
T ss_pred eECCCCcCCccCCCCCCccCCCCCCCEEE
Confidence 4455555554 25555555544
No 7
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=94.85 E-value=0.012 Score=45.78 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=6.9
Q ss_pred CCCccCcceee
Q 032638 101 CPECKGEGFVL 111 (136)
Q Consensus 101 CpeCkGEGFVl 111 (136)
|+.|+|.|.+.
T Consensus 83 C~~C~G~G~~i 93 (248)
T 1nlt_A 83 CDVCHGTGDII 93 (248)
T ss_dssp CTTCSSSSSCC
T ss_pred CCCCCCcCEEe
Confidence 66666666655
No 8
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=94.31 E-value=0.02 Score=44.45 Aligned_cols=25 Identities=28% Similarity=0.731 Sum_probs=21.5
Q ss_pred cccccccCCCcc-------CCCCccCcceeee
Q 032638 88 PLKTCEDCGGSG-------ICPECKGEGFVLK 112 (136)
Q Consensus 88 ~~k~Ce~C~GsG-------iCpeCkGEGFVlK 112 (136)
....|+.|+|+| -|+.|+|.|++-+
T Consensus 79 ~~~~C~~C~G~G~~i~~~~~C~~C~G~g~~~~ 110 (248)
T 1nlt_A 79 FQTECDVCHGTGDIIDPKDRCKSCNGKKVENE 110 (248)
T ss_dssp EECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred EEEcCCCCCCcCEEeccCCCCcccCCCceEee
Confidence 456899999988 5999999999864
No 9
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=85.08 E-value=0.36 Score=45.18 Aligned_cols=24 Identities=46% Similarity=0.998 Sum_probs=21.0
Q ss_pred cccccccCCCc---------------cCCCCccCcceee
Q 032638 88 PLKTCEDCGGS---------------GICPECKGEGFVL 111 (136)
Q Consensus 88 ~~k~Ce~C~Gs---------------GiCpeCkGEGFVl 111 (136)
+.-.|++||-+ |-||.|.|-|+++
T Consensus 266 ~~~~cp~~g~~~~~~~p~~FSfN~p~GaCp~C~G~G~~~ 304 (972)
T 2r6f_A 266 EKHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKL 304 (972)
T ss_dssp SSEECTTTCCEEECCCGGGGCSSSTTTBCTTTTSCCEEE
T ss_pred ccccCCCCCCcCCCCChhhcCcCCCCCCCCCCcCccceE
Confidence 34579999986 9999999999987
No 10
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=83.73 E-value=0.53 Score=44.11 Aligned_cols=23 Identities=30% Similarity=0.716 Sum_probs=20.0
Q ss_pred ccccccCC-Cc---------------cCCCCccCcceee
Q 032638 89 LKTCEDCG-GS---------------GICPECKGEGFVL 111 (136)
Q Consensus 89 ~k~Ce~C~-Gs---------------GiCpeCkGEGFVl 111 (136)
.-.|++|| -+ |-||.|.|-|.++
T Consensus 275 ~~~c~~~g~~~~~~~~p~~FSfN~p~GaCp~C~G~G~~~ 313 (993)
T 2ygr_A 275 KLACPNGHALAVDDLEPRSFSFNSPYGACPDCSGLGIRK 313 (993)
T ss_dssp SCBCTTCCCCSCSCCCGGGGCTTSTTTBCTTTTTSCEEE
T ss_pred cccCCCCCCcccCCCChhhcCcCCCCCCCCCCcCcccee
Confidence 45799999 54 9999999999997
No 11
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=83.44 E-value=0.49 Score=43.46 Aligned_cols=24 Identities=42% Similarity=1.016 Sum_probs=20.1
Q ss_pred cccccccCCCc---------------cCCCCccCcceee
Q 032638 88 PLKTCEDCGGS---------------GICPECKGEGFVL 111 (136)
Q Consensus 88 ~~k~Ce~C~Gs---------------GiCpeCkGEGFVl 111 (136)
+.-.|++||-+ |-||+|.|-|.++
T Consensus 248 ~~~~c~~~~~~~~~~~~~~fsfn~p~g~C~~C~G~G~~~ 286 (916)
T 3pih_A 248 ENLMCPVCGIGFPEITPKLFSFNSPYGACPNCHGLGFTF 286 (916)
T ss_dssp SSCBCTTTCCCCCCCSGGGGCTTSTTTBCTTTTTSSEEE
T ss_pred ccccCcccCCccCCCCHhhcCCCCCCCcCCeeecccceE
Confidence 34579999854 9999999999986
No 12
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=72.78 E-value=1.3 Score=29.87 Aligned_cols=14 Identities=36% Similarity=0.892 Sum_probs=12.5
Q ss_pred ccCCCccCCCCccC
Q 032638 93 EDCGGSGICPECKG 106 (136)
Q Consensus 93 e~C~GsGiCpeCkG 106 (136)
..|+|.|.|+.|+-
T Consensus 37 ~~C~G~G~CgtC~v 50 (104)
T 3lxf_A 37 ALCGGCCSCATCHV 50 (104)
T ss_dssp CTTCSSSSCSTTEE
T ss_pred cCCCCCCCCCCCEE
Confidence 58999999999975
No 13
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=72.67 E-value=1.4 Score=29.07 Aligned_cols=14 Identities=43% Similarity=1.239 Sum_probs=12.5
Q ss_pred ccCCCccCCCCccC
Q 032638 93 EDCGGSGICPECKG 106 (136)
Q Consensus 93 e~C~GsGiCpeCkG 106 (136)
..|+|.|.|..|+-
T Consensus 37 ~~C~g~G~CgtC~v 50 (105)
T 1b9r_A 37 AECGGSCVCATCRI 50 (105)
T ss_dssp CSSTTSSCCCCCCC
T ss_pred cCCCCCCCcCcCEE
Confidence 47999999999976
No 14
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=72.21 E-value=3.4 Score=28.52 Aligned_cols=31 Identities=29% Similarity=0.596 Sum_probs=21.4
Q ss_pred cccccccccccCCCc-------c-CCCCcc--------CcceeeecC
Q 032638 84 ETEIPLKTCEDCGGS-------G-ICPECK--------GEGFVLKKL 114 (136)
Q Consensus 84 ~~E~~~k~Ce~C~Gs-------G-iCpeCk--------GEGFVlK~L 114 (136)
......-.|.+||-. . .||.|. |++|.+|.+
T Consensus 68 ~~~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~~i~~G~el~i~~i 114 (119)
T 2kdx_A 68 VDEKVELECKDCSHVFKPNALDYGVCEKCHSKNVIITQGNEMRLLSL 114 (119)
T ss_dssp EEECCEEECSSSSCEECSCCSTTCCCSSSSSCCCEEEESSCCEEEEE
T ss_pred EeccceEEcCCCCCEEeCCCCCCCcCccccCCCcEEecCCeEEEEEE
Confidence 345557889999853 3 899995 555666554
No 15
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=70.50 E-value=1.5 Score=28.93 Aligned_cols=14 Identities=43% Similarity=1.239 Sum_probs=12.4
Q ss_pred ccCCCccCCCCccC
Q 032638 93 EDCGGSGICPECKG 106 (136)
Q Consensus 93 e~C~GsGiCpeCkG 106 (136)
..|+|.|.|..|+-
T Consensus 37 ~~C~g~G~CgtC~v 50 (106)
T 1uwm_A 37 ADCGGACACSTCHA 50 (106)
T ss_dssp CTTSSSSSSCTTEE
T ss_pred cCCCCCCCcCcCEE
Confidence 57999999999975
No 16
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=70.39 E-value=1.5 Score=29.27 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=12.3
Q ss_pred ccCCCccCCCCccC
Q 032638 93 EDCGGSGICPECKG 106 (136)
Q Consensus 93 e~C~GsGiCpeCkG 106 (136)
..|+|.|.|..|+.
T Consensus 41 ~~C~g~G~CgtC~v 54 (109)
T 2y5c_A 41 GACEASLACSTCHV 54 (109)
T ss_dssp CTTSSSSSCCTTEE
T ss_pred cCCCCCcCcCccEE
Confidence 47999999999975
No 17
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=70.01 E-value=1.5 Score=29.12 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=12.7
Q ss_pred ccCCCccCCCCccC
Q 032638 93 EDCGGSGICPECKG 106 (136)
Q Consensus 93 e~C~GsGiCpeCkG 106 (136)
..|+|.|.|..|+.
T Consensus 44 ~~Cgg~G~CgtC~v 57 (108)
T 2bt6_A 44 GACEGTLACSTCHL 57 (108)
T ss_dssp TTTSSSSSBSTTEE
T ss_pred cCCCCCcCcCCCEE
Confidence 68999999999975
No 18
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=69.86 E-value=1.7 Score=30.61 Aligned_cols=14 Identities=29% Similarity=0.762 Sum_probs=12.7
Q ss_pred ccCCCccCCCCccC
Q 032638 93 EDCGGSGICPECKG 106 (136)
Q Consensus 93 e~C~GsGiCpeCkG 106 (136)
..|+|.|.|+.|+-
T Consensus 43 ~~CgG~g~CgtC~v 56 (123)
T 3n9z_C 43 GACEGTLACSTCHL 56 (123)
T ss_dssp CTTCSSSSCSTTBC
T ss_pred CCCCCCCEeCCCee
Confidence 57999999999987
No 19
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=69.59 E-value=1.6 Score=28.72 Aligned_cols=14 Identities=50% Similarity=1.189 Sum_probs=12.3
Q ss_pred ccCCCccCCCCccC
Q 032638 93 EDCGGSGICPECKG 106 (136)
Q Consensus 93 e~C~GsGiCpeCkG 106 (136)
..|+|.|.|.-|+.
T Consensus 37 ~~C~g~G~CgtC~v 50 (106)
T 1xlq_A 37 GDCGGSASCATCHV 50 (106)
T ss_dssp CTTCSSSSSCTTEE
T ss_pred cCCCCCcccCcCEE
Confidence 56999999999975
No 20
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=68.71 E-value=1.8 Score=28.23 Aligned_cols=15 Identities=27% Similarity=0.855 Sum_probs=12.4
Q ss_pred ccCCCccCCCCccCc
Q 032638 93 EDCGGSGICPECKGE 107 (136)
Q Consensus 93 e~C~GsGiCpeCkGE 107 (136)
..|+|.|.|..|+-.
T Consensus 36 ~~C~G~G~Cg~C~v~ 50 (93)
T 1l5p_A 36 DTCQGNKACGKCICK 50 (93)
T ss_dssp TSCSSSSSSCCCEEE
T ss_pred cCCCCcCCcCCCEEE
Confidence 469999999999753
No 21
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=65.44 E-value=2.2 Score=28.47 Aligned_cols=15 Identities=33% Similarity=0.902 Sum_probs=12.7
Q ss_pred ccCCCccCCCCccCc
Q 032638 93 EDCGGSGICPECKGE 107 (136)
Q Consensus 93 e~C~GsGiCpeCkGE 107 (136)
-.|+|.|.|..|+-+
T Consensus 40 ~~C~g~G~CgtC~v~ 54 (113)
T 3ah7_A 40 SACGGVKACTTCHCI 54 (113)
T ss_dssp CTTCSSSSCSTTEEE
T ss_pred cCCCCCCCcCCCEEE
Confidence 469999999999764
No 22
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=64.64 E-value=2.2 Score=30.20 Aligned_cols=14 Identities=36% Similarity=1.099 Sum_probs=12.6
Q ss_pred ccCCCccCCCCccC
Q 032638 93 EDCGGSGICPECKG 106 (136)
Q Consensus 93 e~C~GsGiCpeCkG 106 (136)
..|+|.|.|..|+-
T Consensus 58 ~~C~G~G~CgtC~v 71 (126)
T 3hui_A 58 AECGGACACATCHV 71 (126)
T ss_dssp CTTSSSSCCSTTEE
T ss_pred cCCCCCCCCCCCEE
Confidence 58999999999975
No 23
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=62.64 E-value=3.5 Score=29.88 Aligned_cols=24 Identities=38% Similarity=0.749 Sum_probs=18.3
Q ss_pred ccccccccccCCCc--------cCCCCccCcc
Q 032638 85 TEIPLKTCEDCGGS--------GICPECKGEG 108 (136)
Q Consensus 85 ~E~~~k~Ce~C~Gs--------GiCpeCkGEG 108 (136)
-.+..-.|.+||-. +-||+|+.|-
T Consensus 63 L~v~p~~C~~CG~~F~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 63 LLIKPAQCRKCGFVFKAEINIPSRCPKCKSEW 94 (105)
T ss_dssp EEECCCBBTTTCCBCCCCSSCCSSCSSSCCCC
T ss_pred EEEECcChhhCcCeecccCCCCCCCcCCCCCc
Confidence 34566789999854 5799999874
No 24
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=62.12 E-value=2.7 Score=27.51 Aligned_cols=14 Identities=36% Similarity=0.831 Sum_probs=12.2
Q ss_pred ccCCCccCCCCccC
Q 032638 93 EDCGGSGICPECKG 106 (136)
Q Consensus 93 e~C~GsGiCpeCkG 106 (136)
..|+|.|.|.-|+-
T Consensus 39 ~~C~g~G~Cg~C~v 52 (103)
T 2wlb_A 39 GACEGSVACSTCHV 52 (103)
T ss_dssp CTTTTSSCCSTTEE
T ss_pred cCCCCCCCcCCCEE
Confidence 47999999999975
No 25
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=59.20 E-value=4.3 Score=31.47 Aligned_cols=22 Identities=36% Similarity=0.922 Sum_probs=17.1
Q ss_pred cccccCCCc-------------cCCCCccCcceee
Q 032638 90 KTCEDCGGS-------------GICPECKGEGFVL 111 (136)
Q Consensus 90 k~Ce~C~Gs-------------GiCpeCkGEGFVl 111 (136)
-.|..|+.. ..||.|.+.||.+
T Consensus 135 f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~~f~l 169 (279)
T 1ltl_A 135 FECRGCMRHHAVTQSTNMITEPSLCSECGGRSFRL 169 (279)
T ss_dssp EEETTTCCEEEEECSSSSCCCCSCCTTTCCCCEEE
T ss_pred EEcCCCCCEEEEEecCCcccCCCcCCCCCCCCcEE
Confidence 479999832 3599999999765
No 26
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=54.91 E-value=4.3 Score=27.08 Aligned_cols=15 Identities=27% Similarity=0.623 Sum_probs=12.6
Q ss_pred ccCCCccCCCCccCc
Q 032638 93 EDCGGSGICPECKGE 107 (136)
Q Consensus 93 e~C~GsGiCpeCkGE 107 (136)
..|+|.|.|..|+-.
T Consensus 40 ~~C~~~G~Cg~C~v~ 54 (111)
T 1i7h_A 40 HACEKSCACTTCHCI 54 (111)
T ss_dssp CTTSSSSCCSTTEEE
T ss_pred ccCCCCCcCCCCEEE
Confidence 469999999999754
No 27
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=52.37 E-value=5 Score=36.59 Aligned_cols=15 Identities=53% Similarity=1.143 Sum_probs=13.3
Q ss_pred ccCCCCccCcceeee
Q 032638 98 SGICPECKGEGFVLK 112 (136)
Q Consensus 98 sGiCpeCkGEGFVlK 112 (136)
.|-||.|.|.|.+..
T Consensus 148 ~G~C~~C~G~G~~~~ 162 (842)
T 2vf7_A 148 EGACPECHGLGRVYT 162 (842)
T ss_dssp TTBCTTTTSSSEEEE
T ss_pred CCCCccccCCccEEE
Confidence 499999999999865
No 28
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=50.77 E-value=4.9 Score=32.48 Aligned_cols=22 Identities=36% Similarity=0.915 Sum_probs=16.5
Q ss_pred ccccccCCC------------ccCCCCccCcceeeec
Q 032638 89 LKTCEDCGG------------SGICPECKGEGFVLKK 113 (136)
Q Consensus 89 ~k~Ce~C~G------------sGiCpeCkGEGFVlK~ 113 (136)
...|++|++ .-+|.+| |.|+.+
T Consensus 21 ~~~Cp~C~~~~~~lv~D~~~G~~vC~~C---GlVl~e 54 (345)
T 4bbr_M 21 VLTCPECKVYPPKIVERFSEGDVVCALC---GLVLSD 54 (345)
T ss_dssp -CCCSSCCCSSCCEEEEGGGTEEEETTT---CBEEES
T ss_pred CCcCCCCCCCCCceeEECCCCcEEeCCC---CCCccC
Confidence 347999995 2379999 999874
No 29
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=43.77 E-value=12 Score=26.50 Aligned_cols=24 Identities=33% Similarity=0.995 Sum_probs=17.6
Q ss_pred ccccccCCC-------ccCCCCccCcceeeecCC
Q 032638 89 LKTCEDCGG-------SGICPECKGEGFVLKKLS 115 (136)
Q Consensus 89 ~k~Ce~C~G-------sGiCpeCkGEGFVlK~Ls 115 (136)
...|.+||- ...||.|.++ +|+++
T Consensus 132 ~y~C~~Cg~~~~~~~~~~~Cp~CG~~---~~~~~ 162 (165)
T 2lcq_A 132 RYVCIGCGRKFSTLPPGGVCPDCGSK---VKLIP 162 (165)
T ss_dssp CEEESSSCCEESSCCGGGBCTTTCCB---EEECC
T ss_pred EEECCCCCCcccCCCCCCcCCCCCCc---ceeCC
Confidence 578999993 2379999987 45543
No 30
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=43.03 E-value=3.9 Score=29.84 Aligned_cols=37 Identities=35% Similarity=0.677 Sum_probs=24.5
Q ss_pred ccccccccCCCcc-----------CCCCccCc----c----ee----eecCCHHHHHHHH
Q 032638 87 IPLKTCEDCGGSG-----------ICPECKGE----G----FV----LKKLSEETAERAR 123 (136)
Q Consensus 87 ~~~k~Ce~C~GsG-----------iCpeCkGE----G----FV----lK~Lsee~A~kAR 123 (136)
..-+.|-|||..+ ||.+|.|- | || |.+.+++.-+.-+
T Consensus 25 p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~ 84 (134)
T 2iqj_A 25 EDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQ 84 (134)
T ss_dssp GGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred cCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHH
Confidence 3568999999655 79999982 3 44 4455666555443
No 31
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=40.42 E-value=10 Score=24.46 Aligned_cols=17 Identities=41% Similarity=0.882 Sum_probs=12.9
Q ss_pred ccCCCccCCCCccC---ccee
Q 032638 93 EDCGGSGICPECKG---EGFV 110 (136)
Q Consensus 93 e~C~GsGiCpeCkG---EGFV 110 (136)
..| |.|.|..|+- +|.+
T Consensus 40 ~~C-~~G~Cg~C~v~v~~G~~ 59 (98)
T 1jq4_A 40 SSC-REGGCATCKALCSEGDY 59 (98)
T ss_dssp CSC-CSSCCCCCCBCEEECCC
T ss_pred CCC-CCCCCCCCEEEEEcCcc
Confidence 357 8999999976 3654
No 32
>2bw2_A Bypass of forespore C; sporulation, signaling protein, BOFC, sigmak checkpoint; NMR {Bacillus subtilis}
Probab=39.59 E-value=9.3 Score=28.66 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=11.2
Q ss_pred ccCCCCccCccee
Q 032638 98 SGICPECKGEGFV 110 (136)
Q Consensus 98 sGiCpeCkGEGFV 110 (136)
.+|||.||..||+
T Consensus 63 dDisP~~K~ngY~ 75 (140)
T 2bw2_A 63 DDISPLSKVNGYI 75 (140)
T ss_dssp SSCCTGGGTCCCE
T ss_pred cccChHHhcCceE
Confidence 4799999999985
No 33
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=38.02 E-value=11 Score=35.36 Aligned_cols=21 Identities=43% Similarity=1.110 Sum_probs=16.4
Q ss_pred ccccccCCCccC--------------CCCccCcce
Q 032638 89 LKTCEDCGGSGI--------------CPECKGEGF 109 (136)
Q Consensus 89 ~k~Ce~C~GsGi--------------CpeCkGEGF 109 (136)
.--||.|.|.|+ |+.|.|..|
T Consensus 753 ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~ 787 (972)
T 2r6f_A 753 GGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRY 787 (972)
T ss_dssp TTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCB
T ss_pred cccccccccccceeeehhccccccccccccccccc
Confidence 346999998877 888888765
No 34
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=36.60 E-value=12 Score=34.09 Aligned_cols=21 Identities=43% Similarity=1.138 Sum_probs=16.6
Q ss_pred ccccccCCCccC--------------CCCccCcce
Q 032638 89 LKTCEDCGGSGI--------------CPECKGEGF 109 (136)
Q Consensus 89 ~k~Ce~C~GsGi--------------CpeCkGEGF 109 (136)
.--|+.|.|.|+ |+.|.|.-|
T Consensus 638 ~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~ 672 (842)
T 2vf7_A 638 GGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRY 672 (842)
T ss_dssp TTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCB
T ss_pred ccccccccCCCccchhhhcCCccceecccccCccc
Confidence 345999999883 889998876
No 35
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=36.26 E-value=14 Score=29.70 Aligned_cols=23 Identities=35% Similarity=0.803 Sum_probs=16.1
Q ss_pred cccccccCCCc------------cCCCCccCcceeeec
Q 032638 88 PLKTCEDCGGS------------GICPECKGEGFVLKK 113 (136)
Q Consensus 88 ~~k~Ce~C~Gs------------GiCpeCkGEGFVlK~ 113 (136)
....|++|++. =+|.+| |+|+.+
T Consensus 20 ~~~~CPECGs~~t~IV~D~erGE~VCsdC---GLVLEE 54 (197)
T 3k1f_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALC---GLVLSD 54 (197)
T ss_dssp CCCCCTTTCCSSCCEEEEGGGTEEEETTT---CBBCCC
T ss_pred cCeECcCCCCcCCeEEEeCCCCEEEEcCC---CCCcCC
Confidence 34479999982 157777 888854
No 36
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=35.59 E-value=6.7 Score=26.68 Aligned_cols=21 Identities=38% Similarity=0.898 Sum_probs=15.6
Q ss_pred ccccccccccCC-------CccC--CCCcc
Q 032638 85 TEIPLKTCEDCG-------GSGI--CPECK 105 (136)
Q Consensus 85 ~E~~~k~Ce~C~-------GsGi--CpeCk 105 (136)
.....-.|+-|| +.|| |..|.
T Consensus 22 ~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~ 51 (72)
T 3jyw_9 22 QQHARYDCSFCGKKTVKRGAAGIWTCSCCK 51 (72)
T ss_dssp HHHSCBCCSSCCSSCBSBCSSSCBCCSSSC
T ss_pred HhccCccCCCCCCceeEecCCCeEECCCCC
Confidence 334566899997 6788 88884
No 37
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=34.96 E-value=12 Score=33.39 Aligned_cols=14 Identities=43% Similarity=1.094 Sum_probs=12.7
Q ss_pred ccCCCccCCCCccC
Q 032638 93 EDCGGSGICPECKG 106 (136)
Q Consensus 93 e~C~GsGiCpeCkG 106 (136)
..|+|.|.|..|+.
T Consensus 36 ~~C~G~G~CGtC~v 49 (631)
T 3zyy_X 36 TVCGGAGTCGKCLV 49 (631)
T ss_dssp CSCCCSSCCSTTEE
T ss_pred cCCCCCCcCCCCEE
Confidence 57999999999986
No 38
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=34.70 E-value=61 Score=19.94 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=16.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhcCC
Q 032638 52 SALPETAASVAIAATVVGAAATLLVRRTKG 81 (136)
Q Consensus 52 ~Alpetaas~aiaa~vVGaAat~Lvrr~k~ 81 (136)
.+..-.++...+.+.+++.+..++.||.+-
T Consensus 11 ~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ceEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 344445555444444555566677777643
No 39
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.39 E-value=12 Score=25.50 Aligned_cols=8 Identities=38% Similarity=1.331 Sum_probs=6.5
Q ss_pred ccCCCCcc
Q 032638 98 SGICPECK 105 (136)
Q Consensus 98 sGiCpeCk 105 (136)
.|+||+|.
T Consensus 123 ~G~C~~C~ 130 (131)
T 2o03_A 123 FGTCSDCR 130 (131)
T ss_dssp EECCTTTC
T ss_pred EEEChhhc
Confidence 68888885
No 40
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=31.97 E-value=8.2 Score=26.98 Aligned_cols=9 Identities=33% Similarity=0.733 Sum_probs=5.1
Q ss_pred ccCCCCccC
Q 032638 98 SGICPECKG 106 (136)
Q Consensus 98 sGiCpeCkG 106 (136)
.|+||+|..
T Consensus 130 ~GiC~~C~~ 138 (145)
T 3eyy_A 130 FGRCESCSL 138 (145)
T ss_dssp EEEECC---
T ss_pred EEECHHHhC
Confidence 589999975
No 41
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.65 E-value=16 Score=22.60 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=8.9
Q ss_pred cccccccccCCC
Q 032638 86 EIPLKTCEDCGG 97 (136)
Q Consensus 86 E~~~k~Ce~C~G 97 (136)
+..++.|+.||.
T Consensus 16 ~~~~k~CP~CG~ 27 (50)
T 3j20_Y 16 IRKNKFCPRCGP 27 (50)
T ss_dssp ECSSEECSSSCS
T ss_pred EEecccCCCCCC
Confidence 456788888876
No 42
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=31.54 E-value=15 Score=27.89 Aligned_cols=12 Identities=50% Similarity=1.196 Sum_probs=10.3
Q ss_pred cCCCccCCCCccC
Q 032638 94 DCGGSGICPECKG 106 (136)
Q Consensus 94 ~C~GsGiCpeCkG 106 (136)
.| +.|.|+.|+.
T Consensus 271 ~C-~~G~Cg~C~~ 282 (321)
T 2pia_A 271 SC-ESGTCGSCKT 282 (321)
T ss_dssp SC-SSSSSCTTEE
T ss_pred CC-CCCCCCCCEE
Confidence 48 8999999975
No 43
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=31.15 E-value=14 Score=32.36 Aligned_cols=12 Identities=50% Similarity=1.284 Sum_probs=9.8
Q ss_pred CCCCccCcceee
Q 032638 100 ICPECKGEGFVL 111 (136)
Q Consensus 100 iCpeCkGEGFVl 111 (136)
.||.|.|.|+|.
T Consensus 410 ~Cp~C~G~G~v~ 421 (517)
T 2bx2_L 410 VCPRCSGTGTVR 421 (517)
T ss_dssp CCSSSSSSSCCC
T ss_pred cCCCcCCceeEC
Confidence 578899999885
No 44
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.88 E-value=9 Score=28.14 Aligned_cols=37 Identities=35% Similarity=0.654 Sum_probs=24.1
Q ss_pred cccccccCCCcc-----------CCCCccC----cc----ee----eecCCHHHHHHHHH
Q 032638 88 PLKTCEDCGGSG-----------ICPECKG----EG----FV----LKKLSEETAERARL 124 (136)
Q Consensus 88 ~~k~Ce~C~GsG-----------iCpeCkG----EG----FV----lK~Lsee~A~kAR~ 124 (136)
.-+.|-||+..+ ||.+|.| =| || |-+.+++.-+.-+.
T Consensus 28 ~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~ 87 (141)
T 2crr_A 28 DNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQD 87 (141)
T ss_dssp GGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHH
T ss_pred cCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHH
Confidence 457899998654 7999988 24 33 44556666555444
No 45
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=30.63 E-value=15 Score=26.00 Aligned_cols=23 Identities=39% Similarity=0.833 Sum_probs=16.9
Q ss_pred ccccccccccccCC-------CccC--CCCcc
Q 032638 83 EETEIPLKTCEDCG-------GSGI--CPECK 105 (136)
Q Consensus 83 e~~E~~~k~Ce~C~-------GsGi--CpeCk 105 (136)
|......-.|+-|| +.|| |..|.
T Consensus 30 e~~q~~ky~CpfCgk~~vkR~a~GIW~C~~C~ 61 (92)
T 3izc_m 30 EIQQHARYDCSFCGKKTVKRGAAGIWTCSCCK 61 (92)
T ss_dssp HHHHHSCCCCSSSCSSCCEEEETTEEECTTTC
T ss_pred HHHHhcCCcCCCCCCceeeecccceEEcCCCC
Confidence 33344567899998 7788 98884
No 46
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=30.48 E-value=6.8 Score=28.75 Aligned_cols=19 Identities=32% Similarity=0.864 Sum_probs=15.3
Q ss_pred cccccccCCCc-----------cCCCCccC
Q 032638 88 PLKTCEDCGGS-----------GICPECKG 106 (136)
Q Consensus 88 ~~k~Ce~C~Gs-----------GiCpeCkG 106 (136)
.-+.|-|||.. -||.+|.|
T Consensus 24 ~N~~CaDCg~~~P~WaS~n~GvfiC~~Csg 53 (140)
T 2olm_A 24 HNRKCFDCDQRGPTYVNMTVGSFVCTSCSG 53 (140)
T ss_dssp GGGSCTTTCSSCCCEEETTTTEEECHHHHH
T ss_pred CCCcCCCCCCCCCCceeeccCEEEchhccc
Confidence 46889999854 47999998
No 47
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=30.06 E-value=13 Score=26.82 Aligned_cols=22 Identities=45% Similarity=0.828 Sum_probs=18.4
Q ss_pred CCCCccCcceeeecCCHHHHHHH
Q 032638 100 ICPECKGEGFVLKKLSEETAERA 122 (136)
Q Consensus 100 iCpeCkGEGFVlK~Lsee~A~kA 122 (136)
-||-| ||-|.=|.|+-+.|+|-
T Consensus 53 kCP~C-gEEFyG~~Lp~~EaeKV 74 (95)
T 2k5c_A 53 KCPVC-GEEFYGKTLPRREAEKV 74 (95)
T ss_dssp ECTTT-CCEEETTSSCTTTHHHH
T ss_pred cCCCc-cHHHhcccCChHHHHHH
Confidence 37777 67899999999999885
No 48
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=29.17 E-value=19 Score=25.27 Aligned_cols=12 Identities=33% Similarity=1.171 Sum_probs=10.1
Q ss_pred cCCCccCCCCccC
Q 032638 94 DCGGSGICPECKG 106 (136)
Q Consensus 94 ~C~GsGiCpeCkG 106 (136)
.| |.|.|..|+.
T Consensus 62 ~C-~~G~CgtC~v 73 (128)
T 1doi_A 62 SC-RAGACANCAA 73 (128)
T ss_dssp SS-SSSSSSTTEE
T ss_pred CC-CccCCCCCEe
Confidence 46 8999999965
No 49
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.01 E-value=11 Score=28.27 Aligned_cols=19 Identities=42% Similarity=1.029 Sum_probs=15.5
Q ss_pred cccccccCCCc-----------cCCCCccC
Q 032638 88 PLKTCEDCGGS-----------GICPECKG 106 (136)
Q Consensus 88 ~~k~Ce~C~Gs-----------GiCpeCkG 106 (136)
.-+.|-||+.. -||.+|.|
T Consensus 28 ~N~~CaDCga~~P~WaS~n~GvfiC~~Csg 57 (149)
T 2crw_A 28 TNKVCFDCGAKNPSWASITYGVFLCIDCSG 57 (149)
T ss_dssp TTSBCSSSCCBSCCCEETTTTEECCHHHHH
T ss_pred CCCcCCCCcCCCCCcEEeccCEEEchhcch
Confidence 46799999854 48999998
No 50
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=27.88 E-value=15 Score=26.66 Aligned_cols=23 Identities=43% Similarity=0.836 Sum_probs=17.0
Q ss_pred ccccccccccccCC-------CccC--CCCcc
Q 032638 83 EETEIPLKTCEDCG-------GSGI--CPECK 105 (136)
Q Consensus 83 e~~E~~~k~Ce~C~-------GsGi--CpeCk 105 (136)
|......-.|+-|| +.|| |..|.
T Consensus 30 E~~q~aky~CpfCgk~~vKR~a~GIW~C~kCg 61 (103)
T 4a17_Y 30 EITQHAKYGCPFCGKVAVKRAAVGIWKCKPCK 61 (103)
T ss_dssp HHHHHSCEECTTTCCEEEEEEETTEEEETTTT
T ss_pred HHHhhcCCCCCCCCCceeeecCcceEEcCCCC
Confidence 33344566899998 7888 99994
No 51
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=27.75 E-value=27 Score=27.72 Aligned_cols=22 Identities=36% Similarity=0.831 Sum_probs=16.4
Q ss_pred cccccccCCCc------------cCCCCccCcceeee
Q 032638 88 PLKTCEDCGGS------------GICPECKGEGFVLK 112 (136)
Q Consensus 88 ~~k~Ce~C~Gs------------GiCpeCkGEGFVlK 112 (136)
....|++|+++ -+|.+| |.|+.
T Consensus 20 ~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~C---G~Vl~ 53 (345)
T 3k7a_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALC---GLVLS 53 (345)
T ss_dssp CCCCCSTTCCSCCCCCCCSSSCSCCCSSS---CCCCC
T ss_pred CCCcCcCCCCCCCceEEECCCCCEecCCC---CeEcc
Confidence 35679999874 278888 77775
No 52
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=27.55 E-value=1e+02 Score=18.48 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCC
Q 032638 57 TAASVAIAATVVGAAATLLVRRTKGS 82 (136)
Q Consensus 57 taas~aiaa~vVGaAat~Lvrr~k~~ 82 (136)
+.|.+...+++||-|.-+++-|-.+.
T Consensus 7 ~~A~i~~~LvLvGla~Gf~LLkiqg~ 32 (35)
T 1vf5_F 7 YAALLSFGLIFVGWGLGVLLLKIQGA 32 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhheeecc
Confidence 46778888999999987776665544
No 53
>3ir9_A Peptide chain release factor subunit 1; structural genomics, APC36528.1, C-terminal domain, PSI-2, protein structure initiative; 2.21A {Methanosarcina mazei}
Probab=27.19 E-value=41 Score=24.68 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=19.0
Q ss_pred ccCCCCccCcceee--ecCCHHHHHHHHH
Q 032638 98 SGICPECKGEGFVL--KKLSEETAERARL 124 (136)
Q Consensus 98 sGiCpeCkGEGFVl--K~Lsee~A~kAR~ 124 (136)
.+.||+|.++--+. +++-|+-++.|+.
T Consensus 103 ~~~c~~~g~~~~~~e~~~~ve~L~e~~~~ 131 (166)
T 3ir9_A 103 AGNCPKCGSSLEVTDVTDIVDEFSELADK 131 (166)
T ss_dssp CCBCTTTCCBEEEEEEEEHHHHHHHHHHH
T ss_pred cccccccCccchhhhHHHHHHHHHHHHHh
Confidence 45799999987665 3556677776654
No 54
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=26.82 E-value=8.9 Score=28.24 Aligned_cols=19 Identities=37% Similarity=0.803 Sum_probs=15.2
Q ss_pred cccccccCCCc-----------cCCCCccC
Q 032638 88 PLKTCEDCGGS-----------GICPECKG 106 (136)
Q Consensus 88 ~~k~Ce~C~Gs-----------GiCpeCkG 106 (136)
.-+.|-|||.. -||.+|.|
T Consensus 35 ~N~~CaDCga~~P~WaS~n~GvfiC~~Csg 64 (138)
T 2owa_A 35 ENRTCFDCESRNPTWLSLSFAVFICLNCSS 64 (138)
T ss_dssp GGGBCTTTCCBSCCEEETTTTEEECHHHHH
T ss_pred CCCcCCCCcCCCCCeEEecCCEEEhHhhhH
Confidence 46789999854 47999998
No 55
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=26.21 E-value=22 Score=33.44 Aligned_cols=20 Identities=40% Similarity=1.162 Sum_probs=14.4
Q ss_pred cccccCCCccC--------------CCCccCcce
Q 032638 90 KTCEDCGGSGI--------------CPECKGEGF 109 (136)
Q Consensus 90 k~Ce~C~GsGi--------------CpeCkGEGF 109 (136)
--||.|.|.|+ |+.|.|..|
T Consensus 772 grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~ 805 (993)
T 2ygr_A 772 GRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARY 805 (993)
T ss_dssp TBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSB
T ss_pred ccccccccccceeehhhccccceeeehhcccccc
Confidence 35888888885 777777655
No 56
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=26.14 E-value=72 Score=22.73 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=10.2
Q ss_pred ccccccccccCCCc
Q 032638 85 TEIPLKTCEDCGGS 98 (136)
Q Consensus 85 ~E~~~k~Ce~C~Gs 98 (136)
.....-.|.+||-.
T Consensus 66 ~~p~~~~C~~CG~~ 79 (139)
T 3a43_A 66 EEEAVFKCRNCNYE 79 (139)
T ss_dssp EECCEEEETTTCCE
T ss_pred ecCCcEECCCCCCE
Confidence 45667789999743
No 57
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=25.91 E-value=8.4 Score=28.47 Aligned_cols=19 Identities=42% Similarity=0.905 Sum_probs=14.2
Q ss_pred cccccccCCC-----------ccCCCCccC
Q 032638 88 PLKTCEDCGG-----------SGICPECKG 106 (136)
Q Consensus 88 ~~k~Ce~C~G-----------sGiCpeCkG 106 (136)
.-+.|-|||. .-||.+|.|
T Consensus 16 ~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~ 45 (278)
T 1dcq_A 16 GNDVCCDCGAPDPTWLSTNLGILTCIECSG 45 (278)
T ss_dssp TTTBCTTTCCBSCCEEETTTTEEECHHHHH
T ss_pred CCCcCCCCCCCCCCeEEecCCeEEcHHHHH
Confidence 4578999984 448999965
No 58
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=25.47 E-value=29 Score=22.73 Aligned_cols=22 Identities=36% Similarity=0.992 Sum_probs=15.9
Q ss_pred ccccccCCCcc---CCCCccCccee
Q 032638 89 LKTCEDCGGSG---ICPECKGEGFV 110 (136)
Q Consensus 89 ~k~Ce~C~GsG---iCpeCkGEGFV 110 (136)
...|+.|+-.. .||.|.++=++
T Consensus 6 mr~C~~CgvYTLk~~CP~CG~~T~~ 30 (60)
T 2apo_B 6 MKKCPKCGLYTLKEICPKCGEKTVI 30 (60)
T ss_dssp CEECTTTCCEESSSBCSSSCSBCBC
T ss_pred ceeCCCCCCEeccccCcCCCCcCCC
Confidence 46799998754 49999876443
No 59
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=25.05 E-value=10 Score=28.42 Aligned_cols=20 Identities=40% Similarity=0.944 Sum_probs=15.8
Q ss_pred ccccccccCCCc-----------cCCCCccC
Q 032638 87 IPLKTCEDCGGS-----------GICPECKG 106 (136)
Q Consensus 87 ~~~k~Ce~C~Gs-----------GiCpeCkG 106 (136)
..-+.|-|||.. -||.+|.|
T Consensus 35 p~N~~CaDCga~~P~WaS~n~GvfiC~~Csg 65 (144)
T 2p57_A 35 PTNKACFDCGAKNPSWASITYGVFLCIDCSG 65 (144)
T ss_dssp GGGGBCTTTCCBSCCEEEGGGTEEECHHHHH
T ss_pred CCCCcCCCCcCCCCCeEEeccCEEEhhhchH
Confidence 356899999854 37999998
No 60
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=24.82 E-value=17 Score=32.13 Aligned_cols=22 Identities=27% Similarity=0.931 Sum_probs=5.7
Q ss_pred ccccccccccCCCcc---------CCCCccC
Q 032638 85 TEIPLKTCEDCGGSG---------ICPECKG 106 (136)
Q Consensus 85 ~E~~~k~Ce~C~GsG---------iCpeCkG 106 (136)
.-.+.-.|.+||-.| .||.|..
T Consensus 536 ~n~~~~~C~~CGy~~~~~~~~~~~~CP~Cg~ 566 (605)
T 1h7b_A 536 VNMPVDKCFTCGSTHEMTPTENGFVCSICGE 566 (605)
T ss_dssp EECCEEET-----------------------
T ss_pred eCCCCccCcccCCcCccCccccCCcCCCCCC
Confidence 356678999999776 3999985
No 61
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=24.58 E-value=14 Score=27.99 Aligned_cols=23 Identities=22% Similarity=0.644 Sum_probs=17.0
Q ss_pred ccccccccCC------CccCCCCccCcce
Q 032638 87 IPLKTCEDCG------GSGICPECKGEGF 109 (136)
Q Consensus 87 ~~~k~Ce~C~------GsGiCpeCkGEGF 109 (136)
.....|+.|| |-.+|..|-++.+
T Consensus 161 ~~~~~C~~CGE~~~~~g~~~C~~C~~~~~ 189 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQDGELCLSCQGGSP 189 (191)
T ss_dssp CCEEECTTTCCEEEGGGCSSCHHHHTTCC
T ss_pred cCCEECCcCCCChhhCCCcCCccccCCCC
Confidence 3456688887 6788888887765
No 62
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=24.06 E-value=27 Score=22.54 Aligned_cols=12 Identities=33% Similarity=1.099 Sum_probs=9.8
Q ss_pred cCCCccCCCCccC
Q 032638 94 DCGGSGICPECKG 106 (136)
Q Consensus 94 ~C~GsGiCpeCkG 106 (136)
.|+ .|.|..|+-
T Consensus 38 ~C~-~G~Cg~C~v 49 (98)
T 1iue_A 38 SCR-GGSCSTCAA 49 (98)
T ss_dssp SSC-SSSSSTTEE
T ss_pred CCC-CCcCCCCEE
Confidence 575 999999964
No 63
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=23.92 E-value=56 Score=24.38 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=19.8
Q ss_pred CcceeeecCCH-HHHHHHHHHHhhh
Q 032638 106 GEGFVLKKLSE-ETAERARLTAKNM 129 (136)
Q Consensus 106 GEGFVlK~Lse-e~A~kAR~~AKNm 129 (136)
-|||.+-.||. |++++.|.+|+++
T Consensus 35 k~~f~~~~l~~~~a~~rIk~~a~~i 59 (149)
T 1vyk_A 35 KDRFYLQPLPPTEAAQRAKVSASEI 59 (149)
T ss_dssp TTCCEECCCCHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCHHHHHHHHHHHHHHH
Confidence 58999999986 5667889999886
No 64
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=23.91 E-value=61 Score=19.40 Aligned_cols=10 Identities=60% Similarity=0.640 Sum_probs=6.1
Q ss_pred HHHHHHHHHH
Q 032638 63 IAATVVGAAA 72 (136)
Q Consensus 63 iaa~vVGaAa 72 (136)
+|++|||...
T Consensus 10 IaagVvglll 19 (35)
T 1iij_A 10 IIATVVGVLL 19 (35)
T ss_dssp HHHHHHHHHH
T ss_pred eHHHHHHHHH
Confidence 6667777443
No 65
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.74 E-value=9.8 Score=26.39 Aligned_cols=9 Identities=44% Similarity=1.309 Sum_probs=6.9
Q ss_pred ccCCCCccC
Q 032638 98 SGICPECKG 106 (136)
Q Consensus 98 sGiCpeCkG 106 (136)
.|+||+|+.
T Consensus 127 ~GiC~~C~~ 135 (139)
T 3mwm_A 127 FGTCADCAG 135 (139)
T ss_dssp EECCHHHHC
T ss_pred EEEChHHhC
Confidence 588888864
No 66
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=23.70 E-value=11 Score=29.00 Aligned_cols=19 Identities=42% Similarity=0.954 Sum_probs=14.6
Q ss_pred cccccccCCCc-----------cCCCCccC
Q 032638 88 PLKTCEDCGGS-----------GICPECKG 106 (136)
Q Consensus 88 ~~k~Ce~C~Gs-----------GiCpeCkG 106 (136)
..+.|-||+.. -+|.+|.|
T Consensus 36 ~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~ 65 (329)
T 3o47_A 36 ENNVCFECGAFNPQWVSVTYGIWICLECSG 65 (329)
T ss_dssp TTTBCTTTCCBSCCEEEGGGTEEECHHHHH
T ss_pred CCCcCCCCCCCCCCeEEecCCEEEChhhhh
Confidence 45789999854 47888886
No 67
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=23.42 E-value=18 Score=31.71 Aligned_cols=17 Identities=29% Similarity=0.872 Sum_probs=12.8
Q ss_pred cccccccCCC--------ccCCCCcc
Q 032638 88 PLKTCEDCGG--------SGICPECK 105 (136)
Q Consensus 88 ~~k~Ce~C~G--------sGiCpeCk 105 (136)
....| .||+ .|.||.|.
T Consensus 555 ~~~~c-~cg~~~~~k~g~~G~CP~Cg 579 (633)
T 2gai_A 555 TNQKC-SCGKEMRLSFGKYGFYLKCE 579 (633)
T ss_dssp EEEEC-TTSCEEEEEEETTEEEEECS
T ss_pred ccchh-hcCceeeecccccccCcccC
Confidence 45579 8985 46799997
No 68
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.29 E-value=19 Score=25.78 Aligned_cols=10 Identities=30% Similarity=1.159 Sum_probs=6.7
Q ss_pred ccCCCCccCc
Q 032638 98 SGICPECKGE 107 (136)
Q Consensus 98 sGiCpeCkGE 107 (136)
.|+||+|...
T Consensus 147 ~GiC~~C~~~ 156 (162)
T 4ets_A 147 YGVCGDCNNQ 156 (162)
T ss_dssp EEECSTTC--
T ss_pred EEEChHHcCc
Confidence 5899999754
No 69
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A
Probab=23.15 E-value=23 Score=25.89 Aligned_cols=12 Identities=8% Similarity=-0.020 Sum_probs=8.3
Q ss_pred CCCccCcceeee
Q 032638 101 CPECKGEGFVLK 112 (136)
Q Consensus 101 CpeCkGEGFVlK 112 (136)
|+.|+|.|++-+
T Consensus 30 c~~c~G~g~~~~ 41 (181)
T 3agx_A 30 RLNPDGKSIRNE 41 (181)
T ss_dssp EECTTSSCEEEE
T ss_pred cCCCCCceEEEE
Confidence 677778887643
No 70
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=23.12 E-value=30 Score=25.03 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=23.9
Q ss_pred ccccccccccCCC-----ccCCCCccCcceeeecCC
Q 032638 85 TEIPLKTCEDCGG-----SGICPECKGEGFVLKKLS 115 (136)
Q Consensus 85 ~E~~~k~Ce~C~G-----sGiCpeCkGEGFVlK~Ls 115 (136)
-+...-.|.+||- ...||.|.+.-+-...+|
T Consensus 43 g~L~~~rC~~CG~~~fPPr~~Cp~C~s~~~e~v~ls 78 (145)
T 2gnr_A 43 NKIIGSKCSKCGRIFVPARSYCEHCFVKIENYVEIN 78 (145)
T ss_dssp TCCEEEECTTTCCEEESCCSEETTTTEECCEEEECC
T ss_pred CEEEEEEECCCCcEEeCCCCCCCCCCCCccEEEEcc
Confidence 3566778999996 578999988766666665
No 71
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.93 E-value=34 Score=20.07 Aligned_cols=11 Identities=27% Similarity=1.105 Sum_probs=5.5
Q ss_pred CCCccCcceee
Q 032638 101 CPECKGEGFVL 111 (136)
Q Consensus 101 CpeCkGEGFVl 111 (136)
||+|+++-+++
T Consensus 8 CP~C~~~~l~~ 18 (50)
T 1pft_A 8 CPACESAELIY 18 (50)
T ss_dssp CTTTSCCCEEE
T ss_pred CcCCCCcceEE
Confidence 66665533333
No 72
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=21.96 E-value=34 Score=21.38 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=7.8
Q ss_pred cccccCCCccC
Q 032638 90 KTCEDCGGSGI 100 (136)
Q Consensus 90 k~Ce~C~GsGi 100 (136)
..|++|++.-|
T Consensus 12 ~~Cp~C~~~~l 22 (58)
T 1dl6_A 12 VTCPNHPDAIL 22 (58)
T ss_dssp CSBTTBSSSCC
T ss_pred ccCcCCCCCce
Confidence 35888887666
No 73
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=21.86 E-value=33 Score=21.22 Aligned_cols=13 Identities=46% Similarity=1.106 Sum_probs=9.3
Q ss_pred CccCCCCccCcce
Q 032638 97 GSGICPECKGEGF 109 (136)
Q Consensus 97 GsGiCpeCkGEGF 109 (136)
|.=.||+|..+||
T Consensus 48 g~W~C~~C~~~g~ 60 (61)
T 2l5u_A 48 GKWSCPHCEKEGI 60 (61)
T ss_dssp SSCCCTTGGGGSC
T ss_pred CceECcccccccc
Confidence 4557888887776
No 74
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=21.85 E-value=31 Score=22.22 Aligned_cols=12 Identities=42% Similarity=1.295 Sum_probs=9.9
Q ss_pred cCCCccCCCCccC
Q 032638 94 DCGGSGICPECKG 106 (136)
Q Consensus 94 ~C~GsGiCpeCkG 106 (136)
.|+ .|.|..|+-
T Consensus 38 ~C~-~G~Cg~C~v 49 (97)
T 1a70_A 38 SCR-AGSCSSCAG 49 (97)
T ss_dssp SSS-SSCSSTTEE
T ss_pred CCC-CcCCCCCeE
Confidence 575 999999965
No 75
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=21.59 E-value=32 Score=21.95 Aligned_cols=12 Identities=42% Similarity=1.323 Sum_probs=9.9
Q ss_pred cCCCccCCCCccC
Q 032638 94 DCGGSGICPECKG 106 (136)
Q Consensus 94 ~C~GsGiCpeCkG 106 (136)
.|+ .|.|..|+-
T Consensus 36 ~C~-~G~Cg~C~v 47 (94)
T 1awd_A 36 SCR-AGACSSCAG 47 (94)
T ss_dssp SSS-SSSSSTTEE
T ss_pred CCC-CCcCCCCEE
Confidence 575 999999965
No 76
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=20.97 E-value=34 Score=21.89 Aligned_cols=12 Identities=42% Similarity=1.268 Sum_probs=9.8
Q ss_pred cCCCccCCCCccC
Q 032638 94 DCGGSGICPECKG 106 (136)
Q Consensus 94 ~C~GsGiCpeCkG 106 (136)
.|+ .|.|..|+.
T Consensus 36 ~C~-~G~Cg~C~v 47 (93)
T 1wri_A 36 SCQ-AGACSTCLG 47 (93)
T ss_dssp SSS-SSSSSTTEE
T ss_pred CCC-CCCCCCCEE
Confidence 465 999999965
No 77
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=20.80 E-value=43 Score=26.08 Aligned_cols=33 Identities=33% Similarity=0.619 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCccccccccccccCCCc-----------cCCCCccCc
Q 032638 72 ATLLVRRTKGSEETEIPLKTCEDCGGS-----------GICPECKGE 107 (136)
Q Consensus 72 at~Lvrr~k~~e~~E~~~k~Ce~C~Gs-----------GiCpeCkGE 107 (136)
+.-|+|--.. .+.+...|..|||. =.||=|+..
T Consensus 120 AW~LvRf~~s---~~L~l~~C~~Cgg~fv~~~~~~~~~f~Cp~C~~p 163 (192)
T 2avu_E 120 AWTLVRFVES---GLLQLSSCNCCGGNFITHAHQPVGSFACSLCQPP 163 (192)
T ss_dssp HHHHHHHHHT---TSEEEEECTTTCCEEEEESSCCSSCCCCTTC---
T ss_pred HHHHHHHhcc---CceeeCcCCCCCCCeeCccCCCCCCCcCCCCCCc
Confidence 3445554443 57889999999986 469999843
No 78
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=20.65 E-value=21 Score=25.29 Aligned_cols=23 Identities=39% Similarity=0.862 Sum_probs=16.2
Q ss_pred ccccccccccccCC-------CccC--CCCcc
Q 032638 83 EETEIPLKTCEDCG-------GSGI--CPECK 105 (136)
Q Consensus 83 e~~E~~~k~Ce~C~-------GsGi--CpeCk 105 (136)
|......-.|+-|| +.|| |..|.
T Consensus 30 e~~q~~ky~CpfCgk~~vkR~a~GIW~C~~Cg 61 (92)
T 3iz5_m 30 EVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCG 61 (92)
T ss_dssp HHHHHSCBCCTTTCSSCBEEEETTEEECSSSC
T ss_pred HHHHhccccCcccCCCeeEecCcceEEcCCCC
Confidence 33344556899998 6777 88884
No 79
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=20.42 E-value=48 Score=21.74 Aligned_cols=22 Identities=32% Similarity=0.872 Sum_probs=16.6
Q ss_pred ccccccCCCcc---CCCCccCccee
Q 032638 89 LKTCEDCGGSG---ICPECKGEGFV 110 (136)
Q Consensus 89 ~k~Ce~C~GsG---iCpeCkGEGFV 110 (136)
...|+.||-.- .||.|.++=++
T Consensus 5 mr~C~~Cg~YTLk~~CP~CG~~t~~ 29 (60)
T 2aus_D 5 IRKCPKCGRYTLKETCPVCGEKTKV 29 (60)
T ss_dssp CEECTTTCCEESSSBCTTTCSBCEE
T ss_pred ceECCCCCCEEccccCcCCCCccCC
Confidence 56799998654 49999887554
Done!