BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032640
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4K526|TM256_BUFGR Transmembrane protein 256 homolog OS=Bufo gargarizans PE=3 SV=1
Length = 114
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 30 IWHKIAAVSGVAALGLGTYGAHGFK--PQNPSFKEVWQTASLYHLVHTAALVAAPITKNP 87
+W ++ AVSG A+ G YGAHGF+ ++ KE+++T + YH +H+ AL+A P + P
Sbjct: 6 VWGRLGAVSGALAVTAGAYGAHGFRRSDRDEYLKELFETGNRYHFLHSLALLAVPHCRRP 65
Query: 88 NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASL 134
+ G LLT+GI+ FSGT Y A D + AP+GG I WA++
Sbjct: 66 LLAGSLLTSGIVLFSGTFYYQALSGDPTLTKAAPYGGTLLILGWAAM 112
>sp|Q568J8|TM256_DANRE Transmembrane protein 256 OS=Danio rerio GN=tmem256 PE=3 SV=1
Length = 114
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 32 HKIAAVSGVAALGLGTYGAHGFKPQNPSF--KEVWQTASLYHLVHTAALVAAPITKNPNI 89
++A +SG A+ G YGAHGF+ S +E++ TA+ YH H+ AL+ A + P +
Sbjct: 8 QRVAGISGALAVAAGAYGAHGFRRSEASDYQRELFDTANKYHFYHSLALLGAARCRKPAL 67
Query: 90 FGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASL 134
G +L G+ F G Y D +S LAP GG I WA++
Sbjct: 68 AGVILLTGMGCFCGPLYHQPLTNDPSFSKLAPIGGSLLIVGWAAM 112
>sp|Q5F285|TM256_MOUSE Transmembrane protein 256 OS=Mus musculus GN=Tmem256 PE=2 SV=1
Length = 113
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%)
Query: 33 KIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIFGG 92
++ A+SG ALGL +YGAHG + + KE++ A+ +H +H+ AL+ P + P G
Sbjct: 10 RLGALSGAGALGLASYGAHGAQFPDAYGKELFDKANKHHFLHSLALLGVPSCRKPVWAGL 69
Query: 93 LLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLLF 136
LL +G F + Y A D TL P GG I W +L F
Sbjct: 70 LLASGTTLFCTSFYYQALSGDTSIQTLGPVGGSLLILGWLALAF 113
>sp|Q9P7G8|YLKC_SCHPO UPF0382 membrane protein C1782.12c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1782.12c PE=3 SV=1
Length = 118
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 30 IWHKIAAVSGVAALGLGTYGAHGFKP--QNPSFKEVWQTASLYHLVHTAALVAA---PIT 84
IW+ +AA++G+ ++GLG YG+HG + Q+P + W TA Y + H+ A +A P+
Sbjct: 3 IWN-VAALTGLLSVGLGAYGSHGLQKRVQDPHLLKSWSTACTYLMFHSLATMAVSLHPVY 61
Query: 85 KNPNIFGGLLTAGILAFSGTCYTVAFLED-----RKYSTLAPFGGFAFIGAWASLL 135
G LL G FSGT Y + L R L P GG + WA++L
Sbjct: 62 GKSRWTGPLLITGSCLFSGTIYGLCLLPKGHSLRRILGPLTPIGGLVMLTGWATML 117
>sp|Q2KI29|TM256_BOVIN Transmembrane protein 256 OS=Bos taurus GN=TMEM256 PE=3 SV=1
Length = 113
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%)
Query: 31 WHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIF 90
+ ++ A+SG ALGL +YGAHG + + KE++ + +H +H+ AL+A P+ + P
Sbjct: 8 FRRLGALSGAGALGLASYGAHGAQFPDAYGKELFDKTNKHHFLHSLALLAVPLCRKPLWA 67
Query: 91 GGLLTAGILAFSGTCYTVAFLEDRKYSTLAP 121
G LL +G F T Y A D + LAP
Sbjct: 68 GLLLASGTTLFCTTFYYQALSGDPSFQNLAP 98
>sp|Q49VD3|Y2132_STAS1 UPF0382 membrane protein SSP2132 OS=Staphylococcus saprophyticus
subsp. saprophyticus (strain ATCC 15305 / DSM 20229)
GN=SSP2132 PE=3 SV=2
Length = 120
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITK-----NP 87
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H L+A I N
Sbjct: 7 LGALNAMMAVGTGAFGAHGLENKLSAKYLSVWEKATTYQMYHGLGLLAIGIISGTTSINV 66
Query: 88 NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
N G LL GI+ FSG+ Y +A + R + P GG FI W L+
Sbjct: 67 NWVGWLLFFGIVFFSGSLYILALTQIRIIGAITPIGGVLFIVGWLMLV 114
>sp|Q2YS64|Y533_STAAB UPF0382 membrane protein SAB0533 OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=SAB0533 PE=3 SV=1
Length = 122
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 6/108 (5%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAAL-----VAAPITKNP 87
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL ++ + N
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
Query: 88 NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
N G L+ AGI+ FSG+ Y + + + T+ P GG FI W L+
Sbjct: 67 NWAGWLIFAGIIFFSGSLYILVLTQIKVLGTITPIGGVLFIIGWIMLI 114
>sp|P39619|YWDK_BACSU UPF0382 membrane protein YwdK OS=Bacillus subtilis (strain 168)
GN=ywdK PE=2 SV=2
Length = 123
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQNPS-FKEVWQTASLYHLVHTAALVAAPITKNP----- 87
+ A++ + A+GLG +GAHG + + P + +VW T YH+ H L +
Sbjct: 7 LGAINALLAVGLGAFGAHGLEGKIPDKYLQVWHTGVQYHMYHALGLFVVAFLADKLSGIG 66
Query: 88 --NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAW 131
G L+ AGI+ FSG+ Y ++ + + P GG AFI +W
Sbjct: 67 SVTTAGWLMFAGIVLFSGSLYILSVTQISILGAITPLGGVAFIISW 112
>sp|Q5HI93|Y629_STAAC UPF0382 membrane protein SACOL0629 OS=Staphylococcus aureus (strain
COL) GN=SACOL0629 PE=3 SV=1
Length = 122
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAAL-----VAAPITKNP 87
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL ++ + N
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
Query: 88 NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
N G L+ AGI+ FSG+ Y + + + + P GG FI W L+
Sbjct: 67 NWAGWLIFAGIIFFSGSLYILVLTQIKVLGAITPIGGVLFIIGWIMLI 114
>sp|Q6GJ86|Y588_STAAR UPF0382 membrane protein SAR0588 OS=Staphylococcus aureus (strain
MRSA252) GN=SAR0588 PE=3 SV=1
Length = 122
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAAL-----VAAPITKNP 87
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL ++ + N
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
Query: 88 NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
N G L+ AGI+ FSG+ Y + + + + P GG FI W L+
Sbjct: 67 NWAGWLIFAGIIFFSGSLYILVLTQIKVLGAITPIGGVLFIIGWIMLI 114
>sp|Q99W28|Y583_STAAM UPF0382 membrane protein SAV0583 OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=SAV0583 PE=3 SV=1
Length = 122
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAAL-----VAAPITKNP 87
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL ++ + N
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
Query: 88 NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
N G L+ AGI+ FSG+ Y + + + + P GG FI W L+
Sbjct: 67 NWAGWLIFAGIIFFSGSLYILVLTQIKVLGAITPIGGVLFIIGWIMLI 114
>sp|Q2G0J5|Y567_STAA8 UPF0382 membrane protein SAOUHSC_00567 OS=Staphylococcus aureus
(strain NCTC 8325) GN=SAOUHSC_00567 PE=3 SV=1
Length = 122
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAAL-----VAAPITKNP 87
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL ++ + N
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
Query: 88 NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
N G L+ AGI+ FSG+ Y + + + + P GG FI W L+
Sbjct: 67 NWAGWLIFAGIIFFSGSLYILVLTQIKVLGAITPIGGVLFIIGWIMLI 114
>sp|Q2FJ60|Y565_STAA3 UPF0382 membrane protein SAUSA300_0565 OS=Staphylococcus aureus
(strain USA300) GN=SAUSA300_0565 PE=3 SV=1
Length = 122
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAAL-----VAAPITKNP 87
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL ++ + N
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
Query: 88 NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
N G L+ AGI+ FSG+ Y + + + + P GG FI W L+
Sbjct: 67 NWAGWLIFAGIIFFSGSLYILVLTQIKVLGAITPIGGVLFIIGWIMLI 114
>sp|Q6GBQ4|Y541_STAAS UPF0382 membrane protein SAS0541 OS=Staphylococcus aureus (strain
MSSA476) GN=SAS0541 PE=3 SV=1
Length = 122
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAAL-----VAAPITKNP 87
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL ++ + N
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
Query: 88 NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
N G L+ AGI+ FSG+ Y + + + + P GG FI W L+
Sbjct: 67 NWAGWLIFAGIIFFSGSLYILVLTQIKVLGAITPIGGVLFIIGWIMLI 114
>sp|Q7A763|Y540_STAAN UPF0382 membrane protein SA0540 OS=Staphylococcus aureus (strain
N315) GN=SA0540 PE=3 SV=1
Length = 122
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAAL-----VAAPITKNP 87
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL ++ + N
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
Query: 88 NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
N G L+ AGI+ FSG+ Y + + + + P GG FI W L+
Sbjct: 67 NWAGWLIFAGIIFFSGSLYILVLTQIKVLGAITPIGGVLFIIGWIMLI 114
>sp|Q7A1P4|Y538_STAAW UPF0382 membrane protein MW0538 OS=Staphylococcus aureus (strain
MW2) GN=MW0538 PE=3 SV=1
Length = 122
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAAL-----VAAPITKNP 87
+ A++ + A+G G +GAHG + + + + VW+ A+ Y + H AL ++ + N
Sbjct: 7 LGALNAMMAVGTGAFGAHGLQGKISDHYLSVWEKATTYQMYHGLALLIIGVISGTTSINV 66
Query: 88 NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
N G L+ AGI+ FSG+ Y + + + + P GG FI W L+
Sbjct: 67 NWAGWLIFAGIIFFSGSLYILVLTQIKVLGAITPIGGVLFIIGWIMLI 114
>sp|Q8CTQ5|Y353_STAES UPF0382 membrane protein SE_0353 OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=SE_0353 PE=3 SV=1
Length = 122
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVH-----TAALVAAPITKNP 87
+ A++ + A+G G +GAHG + + + + +W+ A+ Y + H L++ + N
Sbjct: 7 LGALNAMMAVGTGAFGAHGLEDKLSDKYMSIWEKATTYQMYHGLGLLVIGLISGTTSINV 66
Query: 88 NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
N G LL GI+ FSG+ Y +A + R + P GG FI W L+
Sbjct: 67 NWAGWLLFFGIVFFSGSLYFLALTQVRILGAITPIGGVLFIIGWLVLV 114
>sp|Q8N2U0|TM256_HUMAN Transmembrane protein 256 OS=Homo sapiens GN=TMEM256 PE=2 SV=1
Length = 113
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%)
Query: 31 WHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIF 90
+ ++ A+SG AALG +YGAHG + + KE++ A+ +H +H+ AL+ P + P
Sbjct: 8 FRRLGALSGAAALGFASYGAHGAQFPDAYGKELFDKANKHHFLHSLALLGVPHCRKPLWA 67
Query: 91 GGLLTAGILAFSGTCYTVAFLEDRKYSTLAP 121
G LL +G F + Y A D TLAP
Sbjct: 68 GLLLASGTTLFCTSFYYQALSGDPSIQTLAP 98
>sp|Q5HRG3|Y230_STAEQ UPF0382 membrane protein SERP0230 OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=SERP0230 PE=3 SV=2
Length = 122
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVH-----TAALVAAPITKNP 87
+ A++ + A+G G +GAHG + + + + +W+ A+ Y + H L++ + N
Sbjct: 7 LGALNAMMAVGTGAFGAHGLEGKLSDKYMSIWEKATTYQMYHGLGLLVIGLISGTTSINV 66
Query: 88 NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
N G LL GI+ FSG+ Y +A + R + P GG FI W L+
Sbjct: 67 NWAGWLLFFGIVFFSGSLYFLALTQVRILGAITPIGGVLFIIGWLVLV 114
>sp|Q4L3Q9|Y2409_STAHJ UPF0382 membrane protein SH2409 OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=SH2409 PE=3 SV=2
Length = 122
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQ-NPSFKEVWQTASLYHLVHTAALVAAPITK-----NP 87
+ A+ + ++G G +GAHG + + + + VW+ A Y + H L+ + N
Sbjct: 7 LGALCTMMSVGTGAFGAHGLEGKLSDKYMSVWEKAVNYQMYHGLGLIIIGVISGTTSINV 66
Query: 88 NIFGGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
N G LL G++ FSG+ Y +A + R + P GG FI W L+
Sbjct: 67 NWAGWLLFLGVVFFSGSLYILALTQIRILGAITPIGGLLFIAGWLMLI 114
>sp|P0ADR5|YGDD_SHIFL UPF0382 inner membrane protein YgdD OS=Shigella flexneri GN=ygdD
PE=3 SV=1
Length = 131
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 35 AAVSGVAALGLGTYGAHGFKPQNPSFKEVW-QTASLYHLVHTAALV--AAPITKNPNIF- 90
AA+SG + LG +GAH + + W QT Y HT A++ A + + +I+
Sbjct: 10 AAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWF 69
Query: 91 ---GGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
L G + FSG+ Y +A R ++ + P GG +F+ WA +L
Sbjct: 70 YWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALML 117
>sp|P0ADR2|YGDD_ECOLI UPF0382 inner membrane protein YgdD OS=Escherichia coli (strain
K12) GN=ygdD PE=1 SV=1
Length = 131
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 35 AAVSGVAALGLGTYGAHGFKPQNPSFKEVW-QTASLYHLVHTAALV--AAPITKNPNIF- 90
AA+SG + LG +GAH + + W QT Y HT A++ A + + +I+
Sbjct: 10 AAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWF 69
Query: 91 ---GGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
L G + FSG+ Y +A R ++ + P GG +F+ WA +L
Sbjct: 70 YWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALML 117
>sp|P0ADR3|YGDD_ECOL6 UPF0382 inner membrane protein YgdD OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=ygdD PE=3 SV=1
Length = 131
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 35 AAVSGVAALGLGTYGAHGFKPQNPSFKEVW-QTASLYHLVHTAALV--AAPITKNPNIF- 90
AA+SG + LG +GAH + + W QT Y HT A++ A + + +I+
Sbjct: 10 AAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWF 69
Query: 91 ---GGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
L G + FSG+ Y +A R ++ + P GG +F+ WA +L
Sbjct: 70 YWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALML 117
>sp|P0ADR4|YGDD_ECO57 UPF0382 inner membrane protein YgdD OS=Escherichia coli O157:H7
GN=ygdD PE=3 SV=1
Length = 131
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 35 AAVSGVAALGLGTYGAHGFKPQNPSFKEVW-QTASLYHLVHTAALV--AAPITKNPNIF- 90
AA+SG + LG +GAH + + W QT Y HT A++ A + + +I+
Sbjct: 10 AAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWF 69
Query: 91 ---GGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135
L G + FSG+ Y +A R ++ + P GG +F+ WA +L
Sbjct: 70 YWSSVFLALGTVLFSGSLYCLALSHLRLWAFVTPVGGVSFLAGWALML 117
>sp|P45019|Y1073_HAEIN UPF0382 membrane protein HI_1073 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1073 PE=3 SV=1
Length = 124
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 34 IAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASL-YHLVHTAALVAAPITK-NPNIFG 91
+ A+SG + LG + AHG + W L Y + HT A++A ++ N F
Sbjct: 8 LVALSGFFCVALGAFAAHGLSHILEAKALSWIDTGLEYQMFHTIAVLAVALSALRDNKFA 67
Query: 92 GLLTA----GILAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASL 134
L + GIL FSG+ Y +AF + P GG F+ W SL
Sbjct: 68 RLSMSSWLIGILLFSGSLYALAFEASNVIVWITPIGGTLFLIGWISL 114
>sp|Q21J49|NHAB_SACD2 Na(+)/H(+) antiporter NhaB OS=Saccharophagus degradans (strain 2-40
/ ATCC 43961 / DSM 17024) GN=nhaB PE=3 SV=1
Length = 499
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 50/124 (40%), Gaps = 19/124 (15%)
Query: 2 RRHSTMSEERLIRREPKERRRIIMMDPVIWHKIA-AVSGVAALGLGTYGAHGFKPQNPSF 60
HS + RE + R + ++ + A+ GVA L +G +PQN
Sbjct: 178 HDHSADDNVHDLHREDLDTFRSFLRSLIMHGAVGTALGGVATL-VG-------EPQNLLI 229
Query: 61 KEV--WQTASLYHLVHTAALVAAPITKNPNIFGGLLTAGILAFSGTCYTVAFLEDRKYST 118
E+ W Y LV API+ P + GGLLT IL +G C A L D
Sbjct: 230 AEIAGWNFIEFY-------LVMAPISV-PALIGGLLTCAILEKTGICGYGAKLPDSVRQI 281
Query: 119 LAPF 122
L F
Sbjct: 282 LVDF 285
>sp|Q9W1X4|NU214_DROME Nuclear pore complex protein Nup214 OS=Drosophila melanogaster
GN=Nup214 PE=1 SV=2
Length = 1711
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 81 APITKNPNIFGGLLTAGILAFSGT 104
A TK NIFGG L+AG +F GT
Sbjct: 1209 ADTTKPANIFGGGLSAGSFSFGGT 1232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,126,112
Number of Sequences: 539616
Number of extensions: 1923068
Number of successful extensions: 5011
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 4957
Number of HSP's gapped (non-prelim): 34
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)