Query 032640
Match_columns 136
No_of_seqs 121 out of 738
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 04:03:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10873 hypothetical protein; 100.0 1.6E-38 3.6E-43 238.2 13.0 111 26-136 1-118 (131)
2 KOG3472 Predicted small membra 100.0 3.4E-36 7.3E-41 218.3 9.6 109 28-136 3-112 (112)
3 COG2363 Uncharacterized small 100.0 1E-34 2.2E-39 215.9 9.8 108 28-135 2-115 (124)
4 PF04241 DUF423: Protein of un 100.0 2.6E-30 5.6E-35 182.1 8.0 82 44-125 1-89 (89)
5 PTZ00270 variable surface prot 52.1 6.4 0.00014 33.7 0.8 24 92-126 275-298 (333)
6 PF05392 COX7B: Cytochrome C o 37.4 46 0.001 23.3 3.1 33 91-123 38-70 (80)
7 PF04156 IncA: IncA protein; 36.6 1.9E+02 0.004 21.9 7.0 25 89-113 41-65 (191)
8 PHA02324 hypothetical protein 34.0 14 0.0003 23.2 0.1 22 2-23 2-23 (47)
9 PF04156 IncA: IncA protein; 31.4 66 0.0014 24.4 3.5 45 89-133 7-52 (191)
10 PF06796 NapE: Periplasmic nit 28.3 94 0.002 20.3 3.2 8 7-14 1-8 (56)
11 PF07332 DUF1469: Protein of u 25.7 1E+02 0.0022 21.7 3.4 44 90-134 44-90 (121)
12 PF13055 DUF3917: Protein of u 25.5 25 0.00053 23.7 0.1 26 88-113 37-62 (71)
13 PF12650 DUF3784: Domain of un 24.2 1.2E+02 0.0026 20.8 3.4 20 5-26 27-46 (97)
No 1
>PRK10873 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-38 Score=238.19 Aligned_cols=111 Identities=28% Similarity=0.427 Sum_probs=101.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhcccCCC-CChhHHHHHHHHHHHHHHHHHHHHHhcc------cCchHHHHHHHHHhH
Q 032640 26 MDPVIWHKIAAVSGVAALGLGTYGAHGFKP-QNPSFKEVWQTASLYHLVHTAALVAAPI------TKNPNIFGGLLTAGI 98 (136)
Q Consensus 26 ~~~~~~~~l~al~Ga~aValGA~gAH~l~~-~~~~~~~~~~tA~~Y~~~HalaLl~~~~------~~~~~~a~~l~~~G~ 98 (136)
|.+|.++++++++|+++|++||||||++|+ .+|+++++||||+|||+||++|+++++. .+..+.++++|++|+
T Consensus 1 m~~~~~l~la~l~g~~aValGA~gAH~l~~~l~~~~~~~~~ta~~Yq~~HalaLl~~~~~~~~~~~~~~~~a~~l~~~G~ 80 (131)
T PRK10873 1 MTSRFMLIFAAISGFIYVALGAFGAHVLSKTLGAVEMGWIQTGLEYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGT 80 (131)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 456788999999999999999999999999 7999999999999999999999998753 123568999999999
Q ss_pred HHhhHHHHHHHhhCCCccccccchhHHHHHHHHHHhhC
Q 032640 99 LAFSGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLLF 136 (136)
Q Consensus 99 ~lFsGsLY~~al~~~~~l~~itPiGG~~lIlGWl~la~ 136 (136)
++||||+|+++++++|+++++||+||++||+||+++++
T Consensus 81 ~lFsGSlY~~al~~~~~l~~itPiGG~~li~GWl~la~ 118 (131)
T PRK10873 81 VLFSGSLYCLALSHLRLWAYITPVGGVSFLAGWALMLI 118 (131)
T ss_pred HHHhHHHHHHHHcCCcccccCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999863
No 2
>KOG3472 consensus Predicted small membrane protein [Function unknown]
Probab=100.00 E-value=3.4e-36 Score=218.26 Aligned_cols=109 Identities=49% Similarity=0.909 Sum_probs=105.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCC-CChhHHHHHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHhHHHhhHHHH
Q 032640 28 PVIWHKIAAVSGVAALGLGTYGAHGFKP-QNPSFKEVWQTASLYHLVHTAALVAAPITKNPNIFGGLLTAGILAFSGTCY 106 (136)
Q Consensus 28 ~~~~~~l~al~Ga~aValGA~gAH~l~~-~~~~~~~~~~tA~~Y~~~HalaLl~~~~~~~~~~a~~l~~~G~~lFsGsLY 106 (136)
++.|+++++++|+.++.+||||+|++|+ .|+++++.||||++||++|++|+++++..|++++.+.|++.|+.+|||++|
T Consensus 3 ~~~~~rlaalsGa~AlglgaYgahvlk~~pd~~~~~~~dtA~~yh~~HSlAlma~P~~~~p~~tg~Ll~tG~~lFsg~~Y 82 (112)
T KOG3472|consen 3 PMTFIRLAALSGAAALGLGAYGAHVLKDVPDPKELKSWDTANRYHFLHSLALMAVPVARKPLWTGGLLITGITLFSGTCY 82 (112)
T ss_pred chHHHHHHHHhhHHHHhhhhhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHcCccccCcchhhhHHHHHHHHhcchhh
Confidence 4568999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCccccccchhHHHHHHHHHHhhC
Q 032640 107 TVAFLEDRKYSTLAPFGGFAFIGAWASLLF 136 (136)
Q Consensus 107 ~~al~~~~~l~~itPiGG~~lIlGWl~la~ 136 (136)
+++++++|.++++||+||++||++|+.+++
T Consensus 83 ~~aL~g~~~~~~lapiGG~~ll~aWltlll 112 (112)
T KOG3472|consen 83 YLALSGDRILQPLAPIGGFVLLAAWLTLLL 112 (112)
T ss_pred eeeecCCcccccccccccHHHHHHHHHHhC
Confidence 999999999999999999999999999864
No 3
>COG2363 Uncharacterized small membrane protein [Function unknown]
Probab=100.00 E-value=1e-34 Score=215.93 Aligned_cols=108 Identities=32% Similarity=0.526 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCC-CChhHHHHHHHHHHHHHHHHHHHHHhcc----cC-chHHHHHHHHHhHHHh
Q 032640 28 PVIWHKIAAVSGVAALGLGTYGAHGFKP-QNPSFKEVWQTASLYHLVHTAALVAAPI----TK-NPNIFGGLLTAGILAF 101 (136)
Q Consensus 28 ~~~~~~l~al~Ga~aValGA~gAH~l~~-~~~~~~~~~~tA~~Y~~~HalaLl~~~~----~~-~~~~a~~l~~~G~~lF 101 (136)
+|.++.+++++|+++|++||||+|++++ .++++.++|+|++||||+|++|++++.. .+ ..+++++++.+|+++|
T Consensus 2 ~~~~~~l~al~g~l~v~lGAfgah~l~~~~~~~~l~~~~Tg~~yqm~Halall~l~l~~~~~~~~~~~ag~ll~~Gi~LF 81 (124)
T COG2363 2 SKTFLILAALSGFLAVALGAFGAHGLAKALHDGELAWLGTGAQYQMFHALALLALGLLALRLRSTVRWAGWLLLLGIVLF 81 (124)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999998 7889999999999999999999998864 12 4588999999999999
Q ss_pred hHHHHHHHhhCCCccccccchhHHHHHHHHHHhh
Q 032640 102 SGTCYTVAFLEDRKYSTLAPFGGFAFIGAWASLL 135 (136)
Q Consensus 102 sGsLY~~al~~~~~l~~itPiGG~~lIlGWl~la 135 (136)
|||||.+++++.|.++.+||+||++||+||++++
T Consensus 82 SGsLy~l~lsg~rllg~iTPiGG~~fi~GW~~l~ 115 (124)
T COG2363 82 SGSLYALALSGLRLLGAITPIGGVLFIAGWLLLA 115 (124)
T ss_pred cchHHHHHHcCcchhhccCCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999986
No 4
>PF04241 DUF423: Protein of unknown function (DUF423); InterPro: IPR006696 This is a potential integral membrane protein with no known function.
Probab=99.96 E-value=2.6e-30 Score=182.08 Aligned_cols=82 Identities=35% Similarity=0.611 Sum_probs=77.8
Q ss_pred HHHHhhcccCCC-CChhHHHHHHHHHHHHHHHHHHHHHhc------ccCchHHHHHHHHHhHHHhhHHHHHHHhhCCCcc
Q 032640 44 GLGTYGAHGFKP-QNPSFKEVWQTASLYHLVHTAALVAAP------ITKNPNIFGGLLTAGILAFSGTCYTVAFLEDRKY 116 (136)
Q Consensus 44 alGA~gAH~l~~-~~~~~~~~~~tA~~Y~~~HalaLl~~~------~~~~~~~a~~l~~~G~~lFsGsLY~~al~~~~~l 116 (136)
++||||+|++|+ .+++++++|+||+|||++|++|+++++ ..+..++++++|++|+++||||+|+++++++|++
T Consensus 1 alGA~gaH~l~~~~~~~~~~~~~tA~~y~~~Halall~~~~~~~~~~~~~~~~a~~l~~~G~~lFsGslY~~al~~~~~~ 80 (89)
T PF04241_consen 1 ALGAFGAHGLKDQLSPEQLEWFQTAVQYQFIHALALLALGLLAQRRSSRLLRLAGWLFLLGTLLFSGSLYYLALTGPKSL 80 (89)
T ss_pred ChHHHHhccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHhHHHHHHHHcCCccc
Confidence 479999999999 799999999999999999999999987 4677899999999999999999999999999999
Q ss_pred ccccchhHH
Q 032640 117 STLAPFGGF 125 (136)
Q Consensus 117 ~~itPiGG~ 125 (136)
+++||+||+
T Consensus 81 ~~itPiGG~ 89 (89)
T PF04241_consen 81 GPITPIGGM 89 (89)
T ss_pred ccCCCCCCC
Confidence 999999995
No 5
>PTZ00270 variable surface protein Vir32; Provisional
Probab=52.09 E-value=6.4 Score=33.65 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=20.0
Q ss_pred HHHHHhHHHhhHHHHHHHhhCCCccccccchhHHH
Q 032640 92 GLLTAGILAFSGTCYTVAFLEDRKYSTLAPFGGFA 126 (136)
Q Consensus 92 ~l~~~G~~lFsGsLY~~al~~~~~l~~itPiGG~~ 126 (136)
+|-+++|.++||.||- +||+|+++
T Consensus 275 ~lGvv~t~~tsgalYr-----------~Tplg~~~ 298 (333)
T PTZ00270 275 LLGVVATSMTSGALYK-----------FTPLGRML 298 (333)
T ss_pred ehhhhhhhhhhhhhee-----------ccchHHHH
Confidence 5677899999999996 78998864
No 6
>PF05392 COX7B: Cytochrome C oxidase chain VIIB; InterPro: IPR008433 Cytochrome oxidase subunit VIIB is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. The X-ray structure of azide-bound fully oxidized cytochrome c oxidase from bovine heart at 2.9 A resolution has been determined [].; GO: 0004129 cytochrome-c oxidase activity, 0005746 mitochondrial respiratory chain; PDB: 3AG2_X 3ASO_K 3ABL_X 1V55_K 1OCR_K 2DYS_X 1OCO_X 2EIK_X 3AG1_K 2Y69_X ....
Probab=37.38 E-value=46 Score=23.32 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=19.5
Q ss_pred HHHHHHhHHHhhHHHHHHHhhCCCccccccchh
Q 032640 91 GGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFG 123 (136)
Q Consensus 91 ~~l~~~G~~lFsGsLY~~al~~~~~l~~itPiG 123 (136)
+-.+++|=..||-+.+.+.+|....-..+-|+|
T Consensus 38 Gn~vL~~Ga~FC~~~W~y~~TQ~GIeWNlSPVG 70 (80)
T PF05392_consen 38 GNAVLASGATFCVAVWTYVATQIGIEWNLSPVG 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSS------STT
T ss_pred CceeeecccchhhhhHhhhheecceeecCCccc
Confidence 344556667899999999998654334455554
No 7
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=36.60 E-value=1.9e+02 Score=21.90 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=19.1
Q ss_pred HHHHHHHHhHHHhhHHHHHHHhhCC
Q 032640 89 IFGGLLTAGILAFSGTCYTVAFLED 113 (136)
Q Consensus 89 ~a~~l~~~G~~lFsGsLY~~al~~~ 113 (136)
+...+..+|+++|++++|......+
T Consensus 41 lg~~~lAlg~vL~~~g~~~~~~~~~ 65 (191)
T PF04156_consen 41 LGIALLALGVVLLSLGLLCLLSKRP 65 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3455666799999999998877654
No 8
>PHA02324 hypothetical protein
Probab=33.95 E-value=14 Score=23.23 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=18.4
Q ss_pred CCcccchhhhhhhcCchhhhhh
Q 032640 2 RRHSTMSEERLIRREPKERRRI 23 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (136)
.+-.++|++.+|.++||.++..
T Consensus 2 ~~~~~lsggk~IESkPK~TRQG 23 (47)
T PHA02324 2 AKKPSLSGGKQIESKPKKTRQG 23 (47)
T ss_pred ccccccCCcceeeccCcccccc
Confidence 4567899999999999998654
No 9
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=31.36 E-value=66 Score=24.40 Aligned_cols=45 Identities=13% Similarity=-0.054 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHhhHHHHHHHhhCCC-ccccccchhHHHHHHHHHH
Q 032640 89 IFGGLLTAGILAFSGTCYTVAFLEDR-KYSTLAPFGGFAFIGAWAS 133 (136)
Q Consensus 89 ~a~~l~~~G~~lFsGsLY~~al~~~~-~l~~itPiGG~~lIlGWl~ 133 (136)
....++++|+++.++++-.+++.+.. .....+.+|+..+.+|=++
T Consensus 7 ~~i~~iilgilli~~gI~~Lv~~~~~l~~~~s~~lg~~~lAlg~vL 52 (191)
T PF04156_consen 7 ISIILIILGILLIASGIAALVLFISGLGALISFILGIALLALGVVL 52 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888887753 2222344455544445333
No 10
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=28.35 E-value=94 Score=20.34 Aligned_cols=8 Identities=25% Similarity=0.169 Sum_probs=3.9
Q ss_pred chhhhhhh
Q 032640 7 MSEERLIR 14 (136)
Q Consensus 7 ~~~~~~~~ 14 (136)
||+++...
T Consensus 1 Ms~~~~~~ 8 (56)
T PF06796_consen 1 MSSQPKSE 8 (56)
T ss_pred CCCCCCCc
Confidence 45555443
No 11
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=25.73 E-value=1e+02 Score=21.67 Aligned_cols=44 Identities=16% Similarity=-0.001 Sum_probs=22.7
Q ss_pred HHHHHHHhHHHhhHHHHHHH--hhC-CCccccccchhHHHHHHHHHHh
Q 032640 90 FGGLLTAGILAFSGTCYTVA--FLE-DRKYSTLAPFGGFAFIGAWASL 134 (136)
Q Consensus 90 a~~l~~~G~~lFsGsLY~~a--l~~-~~~l~~itPiGG~~lIlGWl~l 134 (136)
++.+.+.|.++++..+...- .++ +.+++.+. ++|..+++++++.
T Consensus 44 a~vl~~~~l~~l~~al~~~l~~~~~~~~~~a~li-v~~~~l~la~i~~ 90 (121)
T PF07332_consen 44 AAVLALLALLFLLVALVFALWEALGLPPWLAFLI-VAGLYLLLALILL 90 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH-HHHHHHHHHHHHH
Confidence 44444555555555554443 333 34444433 6666666666554
No 12
>PF13055 DUF3917: Protein of unknown function (DUF3917)
Probab=25.50 E-value=25 Score=23.69 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=20.0
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHhhCC
Q 032640 88 NIFGGLLTAGILAFSGTCYTVAFLED 113 (136)
Q Consensus 88 ~~a~~l~~~G~~lFsGsLY~~al~~~ 113 (136)
.++.-+..+|+.+|.||+-.+-..|.
T Consensus 37 ~~s~~~~fi~itlfags~mvlmvagi 62 (71)
T PF13055_consen 37 NWSTSLVFIGITLFAGSIMVLMVAGI 62 (71)
T ss_pred eeeeeeeeeehHHHhchHHHHHHhhh
Confidence 45566788899999999987766654
No 13
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=24.25 E-value=1.2e+02 Score=20.79 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=10.9
Q ss_pred ccchhhhhhhcCchhhhhhhcc
Q 032640 5 STMSEERLIRREPKERRRIIMM 26 (136)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~ 26 (136)
.||||||.- +.|+++.++.+
T Consensus 27 ntms~eEk~--~~D~~~l~r~~ 46 (97)
T PF12650_consen 27 NTMSKEEKE--KYDKKKLCRFM 46 (97)
T ss_pred ccCCHHHHH--HhhHHHHHHHH
Confidence 478888753 34444444434
Done!