Query 032640
Match_columns 136
No_of_seqs 121 out of 738
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 05:59:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032640.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032640hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_K IHQ, cytochrome C oxida 53.6 17 0.00057 23.0 3.6 33 91-123 14-46 (56)
2 2y69_K Cytochrome C oxidase po 45.8 23 0.0008 23.8 3.6 33 91-123 38-70 (80)
3 2r2o_A Plexin-B1; effector dom 25.9 11 0.00038 27.8 -0.6 19 3-21 6-24 (138)
4 3mk7_A Cytochrome C oxidase, C 9.0 1.9E+02 0.0064 24.6 2.7 78 28-107 14-115 (474)
5 2yvc_D Neprilysin; protein-pep 8.5 98 0.0034 16.3 0.5 22 2-23 2-23 (26)
6 2jp3_A FXYD domain-containing 8.2 2.2E+02 0.0074 18.4 2.1 16 88-103 23-39 (67)
7 2jo1_A Phospholemman; FXYD1, N 7.8 2.3E+02 0.0078 18.6 2.1 17 88-104 22-39 (72)
8 2zxe_G FXYD10, phospholemman-l 7.1 2.6E+02 0.0088 18.4 2.1 12 89-100 26-37 (74)
9 3o0r_B Nitric oxide reductase 7.0 9.9E+02 0.034 20.1 6.4 75 31-107 19-114 (465)
10 3bej_E Nuclear receptor coacti 6.8 1.2E+02 0.004 16.1 0.3 13 2-14 3-15 (26)
No 1
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=53.57 E-value=17 Score=22.97 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=22.2
Q ss_pred HHHHHHhHHHhhHHHHHHHhhCCCccccccchh
Q 032640 91 GGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFG 123 (136)
Q Consensus 91 ~~l~~~G~~lFsGsLY~~al~~~~~l~~itPiG 123 (136)
+-.+++|-..||-+.|.+.+|....=..+-|+|
T Consensus 14 Gn~~L~~Ga~FC~a~W~y~~TQ~GIeWnlSPVG 46 (56)
T 1v54_K 14 GNAVLASGATFCVAVWVYMATQIGIEWNPSPVG 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCTT
T ss_pred CceeeecchhhhHhhHhhhheeeceeeccCccc
Confidence 344556667899999999998654334455554
No 2
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=45.76 E-value=23 Score=23.79 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=22.6
Q ss_pred HHHHHHhHHHhhHHHHHHHhhCCCccccccchh
Q 032640 91 GGLLTAGILAFSGTCYTVAFLEDRKYSTLAPFG 123 (136)
Q Consensus 91 ~~l~~~G~~lFsGsLY~~al~~~~~l~~itPiG 123 (136)
+-.+++|=..||-+.|.+.+|....=..+-|+|
T Consensus 38 Gn~~L~~Ga~FC~a~W~y~~TQ~GIeWnlSPVG 70 (80)
T 2y69_K 38 GNAVLASGATFCVAVWVYMATQIGIEWNPSPVG 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCTT
T ss_pred CceeeecchhHHHhhHHHhheecceeecCCccc
Confidence 445566677899999999998654334455554
No 3
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=25.94 E-value=11 Score=27.80 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=1.6
Q ss_pred CcccchhhhhhhcCchhhh
Q 032640 3 RHSTMSEERLIRREPKERR 21 (136)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~ 21 (136)
.||+|||+++.|+.-+-++
T Consensus 6 ~~~~lsEdkLLRq~vey~~ 24 (138)
T 2r2o_A 6 HHSSGRENLYFQGDVEYRP 24 (138)
T ss_dssp ----------------CCE
T ss_pred cccccChhHhhcccceeEE
Confidence 5899999999998766554
No 4
>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=9.03 E-value=1.9e+02 Score=24.60 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccCCCCChhH-HH-HHHHHHHHHHHHHHHHHH--------------hcc---c----
Q 032640 28 PVIWHKIAAVSGVAALGLGTYGAHGFKPQNPSF-KE-VWQTASLYHLVHTAALVA--------------API---T---- 84 (136)
Q Consensus 28 ~~~~~~l~al~Ga~aValGA~gAH~l~~~~~~~-~~-~~~tA~~Y~~~HalaLl~--------------~~~---~---- 84 (136)
.|.++..+-+.+..+..+|-.-++-+.. |+. .. ..++=++.-..|+..++. ++. .
T Consensus 14 ~~~~~~~a~~~~~~G~~~~llir~~l~~--p~~~~~~~~~~Yn~~~T~H~~~mIf~~v~p~~~g~gn~lvPl~~ga~maf 91 (474)
T 3mk7_A 14 VRQFAIMTVVWGIVGMGLGVFIAAQLAW--PFLNFDLPWTSFGRLRPLHTNAVIFAFGGCALFATSYYSVQRTCQTTLFA 91 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--GGGGTTCTTTSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4567788888888899988888775432 111 10 123444455577777653 111 1
Q ss_pred -CchHHHHHHHHHhHHHhhHHHHH
Q 032640 85 -KNPNIFGGLLTAGILAFSGTCYT 107 (136)
Q Consensus 85 -~~~~~a~~l~~~G~~lFsGsLY~ 107 (136)
|..+.+.+++..|.++...|++.
T Consensus 92 prln~~sfwl~~~~~~l~~~s~~~ 115 (474)
T 3mk7_A 92 PKLAAFTFWGWQLVILLAAISLPL 115 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33467889999998887777765
No 5
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=8.49 E-value=98 Score=16.33 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=16.1
Q ss_pred CCcccchhhhhhhcCchhhhhh
Q 032640 2 RRHSTMSEERLIRREPKERRRI 23 (136)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~ 23 (136)
|+.|.|.-.+....+||+.-++
T Consensus 2 rsesqmditdinapkpkkk~rw 23 (26)
T 2yvc_D 2 RSESQMDITDINAPKPKKKQRX 23 (26)
T ss_pred ccccccccccccCCCcchhhcc
Confidence 5677787777888888876554
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.18 E-value=2.2e+02 Score=18.40 Aligned_cols=16 Identities=44% Similarity=0.387 Sum_probs=10.6
Q ss_pred HHHHHHHHHhHHH-hhH
Q 032640 88 NIFGGLLTAGILA-FSG 103 (136)
Q Consensus 88 ~~a~~l~~~G~~l-FsG 103 (136)
.+++.||++|+++ +||
T Consensus 23 ifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 3577888888764 444
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=7.85 E-value=2.3e+02 Score=18.55 Aligned_cols=17 Identities=41% Similarity=0.444 Sum_probs=11.1
Q ss_pred HHHHHHHHHhHHH-hhHH
Q 032640 88 NIFGGLLTAGILA-FSGT 104 (136)
Q Consensus 88 ~~a~~l~~~G~~l-FsGs 104 (136)
.+++.||++|+++ +||-
T Consensus 22 ifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 3577888888764 4443
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=7.07 E-value=2.6e+02 Score=18.37 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=8.0
Q ss_pred HHHHHHHHhHHH
Q 032640 89 IFGGLLTAGILA 100 (136)
Q Consensus 89 ~a~~l~~~G~~l 100 (136)
+++.||++|+++
T Consensus 26 fA~vLfi~GI~i 37 (74)
T 2zxe_G 26 VAAVLCVIGIII 37 (74)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 566777777654
No 9
>3o0r_B Nitric oxide reductase subunit B; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=7.02 E-value=9.9e+02 Score=20.06 Aligned_cols=75 Identities=17% Similarity=0.045 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHH--------h-----cc--c------CchHH
Q 032640 31 WHKIAAVSGVAALGLGTYGAHGFKPQNPSFKEVWQTASLYHLVHTAALVA--------A-----PI--T------KNPNI 89 (136)
Q Consensus 31 ~~~l~al~Ga~aValGA~gAH~l~~~~~~~~~~~~tA~~Y~~~HalaLl~--------~-----~~--~------~~~~~ 89 (136)
.+..+.+.-..+..+|-+-+|-+-. |+....+++=+|--.+|+-+++. . +. . |..++
T Consensus 19 y~~~a~~~f~vg~l~gll~~~ql~~--P~~~~~~~~fn~~rt~H~~~mifw~~~~~~g~~~ylvP~~~g~dl~~prl~~~ 96 (465)
T 3o0r_B 19 YFVFALILFVGQILFGLIMGLQYVV--GDFLFPAIPFNVARMVHTNLLIVWLLFGFMGAAYYLVPEESDCELYSPKLAWI 96 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS--TTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--CCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 4555666666677778777775443 11111234445555677666542 1 11 1 22345
Q ss_pred HHHHHHHhHHHhhHHHHH
Q 032640 90 FGGLLTAGILAFSGTCYT 107 (136)
Q Consensus 90 a~~l~~~G~~lFsGsLY~ 107 (136)
..+++.+|.++-..++..
T Consensus 97 ~fw~~~~~~~~~~~~~~~ 114 (465)
T 3o0r_B 97 LFWVFAAAGVLTILGYLL 114 (465)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 678888887766666554
No 10
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=6.80 E-value=1.2e+02 Score=16.12 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=8.8
Q ss_pred CCcccchhhhhhh
Q 032640 2 RRHSTMSEERLIR 14 (136)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (136)
.+||||.|.-+|.
T Consensus 3 ss~~sL~EkHkIL 15 (26)
T 3bej_E 3 SSHSSLTERHKIL 15 (26)
T ss_pred CchhhHHHHHHHH
Confidence 3678887766654
Done!