Query 032640
Match_columns 136
No_of_seqs 121 out of 738
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 05:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032640.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032640hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54k_ f.23.5.1 (K:) Mitochon 47.0 12 0.00087 21.6 3.6 32 92-123 10-41 (49)
2 d2e74d2 f.23.12.1 (D:12-45) IS 23.8 41 0.003 17.6 3.0 21 28-48 4-24 (34)
3 d2pn2a1 d.227.1.1 (A:1-132) Un 15.6 53 0.0039 20.5 2.9 41 11-51 24-64 (132)
4 d2onfa1 d.227.1.1 (A:1-139) Hy 8.7 1.2E+02 0.0087 18.8 2.9 41 11-51 24-64 (139)
5 d1vlaa_ d.227.1.2 (A:) Hypothe 8.2 1.9E+02 0.014 17.8 3.8 40 12-51 27-66 (144)
6 d2gc6a1 c.59.1.2 (A:297-425) F 7.5 17 0.0012 22.6 -2.1 13 97-109 109-121 (129)
7 d1ukka_ d.227.1.1 (A:) Hypothe 5.7 2E+02 0.015 17.8 2.8 21 31-51 47-67 (141)
8 d2opla1 d.227.1.1 (A:4-185) Hy 5.5 1.2E+02 0.0084 20.3 1.5 40 12-51 64-103 (182)
9 d1ml8a_ d.227.1.2 (A:) Hypothe 5.4 2.2E+02 0.016 17.4 2.8 20 32-51 39-58 (134)
10 d1o5za1 c.59.1.2 (A:294-430) F 5.0 35 0.0026 21.4 -1.6 12 98-109 109-120 (137)
No 1
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=46.99 E-value=12 Score=21.55 Aligned_cols=32 Identities=13% Similarity=0.033 Sum_probs=22.1
Q ss_pred HHHHHhHHHhhHHHHHHHhhCCCccccccchh
Q 032640 92 GLLTAGILAFSGTCYTVAFLEDRKYSTLAPFG 123 (136)
Q Consensus 92 ~l~~~G~~lFsGsLY~~al~~~~~l~~itPiG 123 (136)
-.+++|=..||-+.|.+.+|....=..+-|+|
T Consensus 10 n~vL~~Ga~fc~avW~yv~TQ~gI~WnlSPVG 41 (49)
T d1v54k_ 10 NAVLASGATFCVAVWVYMATQIGIEWNPSPVG 41 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCCCCCCCTT
T ss_pred cEEEecccchhhhhhhheeeeeeeeecccccc
Confidence 34566667899999999998654434455554
No 2
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=23.78 E-value=41 Score=17.59 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 032640 28 PVIWHKIAAVSGVAALGLGTY 48 (136)
Q Consensus 28 ~~~~~~l~al~Ga~aValGA~ 48 (136)
+|.|+-+-.+..+.+|++||.
T Consensus 4 rrqfmnlltfgt~tg~alg~l 24 (34)
T d2e74d2 4 RRQFMNLLAFGTVTGVALGAL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHhhh
Confidence 344444445556678888875
No 3
>d2pn2a1 d.227.1.1 (A:1-132) Uncharacterized protein Psyc0566 {Psychrobacter arcticus 273-4 [TaxId: 259536]}
Probab=15.56 E-value=53 Score=20.50 Aligned_cols=41 Identities=7% Similarity=-0.041 Sum_probs=27.5
Q ss_pred hhhhcCchhhhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 032640 11 RLIRREPKERRRIIMMDPVIWHKIAAVSGVAALGLGTYGAH 51 (136)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~al~Ga~aValGA~gAH 51 (136)
.++-.+|++..-...-.+-.=+.++++.+++++.+..+..+
T Consensus 24 ~i~~D~P~~~gG~~~g~~P~eLllaala~C~~~~~~~~a~~ 64 (132)
T d2pn2a1 24 EIITDAPVDNQGKGEAFSPTDLLATSLASCMLTIIGIKARD 64 (132)
T ss_dssp EEEEECCGGGTCCCSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666654332222334578899999999999998885
No 4
>d2onfa1 d.227.1.1 (A:1-139) Hypothetical protein Ta0195 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=8.69 E-value=1.2e+02 Score=18.83 Aligned_cols=41 Identities=7% Similarity=-0.185 Sum_probs=26.3
Q ss_pred hhhhcCchhhhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 032640 11 RLIRREPKERRRIIMMDPVIWHKIAAVSGVAALGLGTYGAH 51 (136)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~al~Ga~aValGA~gAH 51 (136)
++.-.+|++..-.....+-.=+.++|+.++.++.+..++..
T Consensus 24 ~i~~D~p~~~GG~~~g~~P~elllaala~C~~~~~~~~a~~ 64 (139)
T d2onfa1 24 RIEVDSPPEFGGPEGQLYPETLFPSVLASCLLTTFLEFKDR 64 (139)
T ss_dssp EEEEECCGGGTCCSSSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCcccCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555443333333334578899999999999888773
No 5
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=8.19 E-value=1.9e+02 Score=17.84 Aligned_cols=40 Identities=5% Similarity=-0.025 Sum_probs=26.0
Q ss_pred hhhcCchhhhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 032640 12 LIRREPKERRRIIMMDPVIWHKIAAVSGVAALGLGTYGAH 51 (136)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~al~Ga~aValGA~gAH 51 (136)
+.-.+|++..-...-.+-.=++++||.+++++.+.++...
T Consensus 27 i~~D~p~~~GG~~~g~~P~elllaala~C~~~~~~~~a~~ 66 (144)
T d1vlaa_ 27 VLMDTKEEVGGKDAAPRPLELVLTGLMGCTGMDVVSILRK 66 (144)
T ss_dssp EEECCCGGGTCCSCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCCCCCcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445565543332333334578899999999999888764
No 6
>d2gc6a1 c.59.1.2 (A:297-425) Folylpolyglutamate synthetase, C-terminal domain {Lactobacillus casei [TaxId: 1582]}
Probab=7.46 E-value=17 Score=22.62 Aligned_cols=13 Identities=15% Similarity=0.414 Sum_probs=8.7
Q ss_pred hHHHhhHHHHHHH
Q 032640 97 GILAFSGTCYTVA 109 (136)
Q Consensus 97 G~~lFsGsLY~~a 109 (136)
+.++.+||+|..+
T Consensus 109 ~~vli~GS~ylvg 121 (129)
T d2gc6a1 109 QPIVITGSLYLAS 121 (129)
T ss_dssp SCEEEESCHHHHH
T ss_pred CcEEEEehHHHHH
Confidence 4467788888643
No 7
>d1ukka_ d.227.1.1 (A:) Hypothetical protein MPN625 {Thermus thermophilus [TaxId: 274]}
Probab=5.73 E-value=2e+02 Score=17.77 Aligned_cols=21 Identities=19% Similarity=0.048 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 032640 31 WHKIAAVSGVAALGLGTYGAH 51 (136)
Q Consensus 31 ~~~l~al~Ga~aValGA~gAH 51 (136)
=++++++.++.++.+..+..+
T Consensus 47 elllaala~C~~~~~~~~a~~ 67 (141)
T d1ukka_ 47 ELIAAAHAGCFSMALAASLER 67 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999988775
No 8
>d2opla1 d.227.1.1 (A:4-185) Hypothetical protein GSU2788 {Geobacter sulfurreducens [TaxId: 35554]}
Probab=5.47 E-value=1.2e+02 Score=20.28 Aligned_cols=40 Identities=18% Similarity=-0.036 Sum_probs=25.1
Q ss_pred hhhcCchhhhhhhccchHHHHHHHHHHHHHHHHHHHhhcc
Q 032640 12 LIRREPKERRRIIMMDPVIWHKIAAVSGVAALGLGTYGAH 51 (136)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~l~al~Ga~aValGA~gAH 51 (136)
....||++..-...-.+-.=+.++||.+|.++.+..++++
T Consensus 64 ~~~DeP~~lgG~~~gp~P~elllaaLa~C~~~~~~~~A~~ 103 (182)
T d2opla1 64 FDLDEPPVLLGENRGANPVEYLLVALSGCLTTSLVAHAAA 103 (182)
T ss_dssp EEECCCGGGTSCCSSBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCccccCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555543222222223467899999999999988873
No 9
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=5.40 E-value=2.2e+02 Score=17.36 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 032640 32 HKIAAVSGVAALGLGTYGAH 51 (136)
Q Consensus 32 ~~l~al~Ga~aValGA~gAH 51 (136)
+.++|+.|+.++.+.++...
T Consensus 39 lllaal~~C~~~~~~~~a~~ 58 (134)
T d1ml8a_ 39 MVLMAAGGCSAIDVVSILQK 58 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999998774
No 10
>d1o5za1 c.59.1.2 (A:294-430) Folylpolyglutamate synthetase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=5.04 E-value=35 Score=21.43 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=7.4
Q ss_pred HHHhhHHHHHHH
Q 032640 98 ILAFSGTCYTVA 109 (136)
Q Consensus 98 ~~lFsGsLY~~a 109 (136)
.++.|||+|..+
T Consensus 109 ~ilv~GSlylvg 120 (137)
T d1o5za1 109 ATVVTGSLFLVG 120 (137)
T ss_dssp EEEEESCHHHHH
T ss_pred CEEEECCHHHHH
Confidence 356677777543
Done!