Query 032641
Match_columns 136
No_of_seqs 118 out of 360
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 06:01:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5c_X RP37, S28, YS14, 40S ri 100.0 5.4E-74 1.8E-78 442.2 12.1 136 1-136 9-145 (145)
2 2xzm_L 40S ribosomal protein S 100.0 1.7E-72 5.9E-77 432.6 14.1 133 1-133 9-141 (142)
3 3j20_N 30S ribosomal protein S 100.0 8.7E-73 3E-77 436.2 12.4 136 1-136 10-147 (147)
4 2vqe_L 30S ribosomal protein S 100.0 6.2E-44 2.1E-48 272.4 6.9 80 32-119 25-104 (135)
5 2dgy_A MGC11102 protein; EIF-1 66.7 8.1 0.00028 27.8 4.4 50 37-97 14-64 (111)
6 1jt8_A EIF-1A, probable transl 60.4 4.7 0.00016 28.7 2.2 49 38-97 20-69 (102)
7 1d7q_A Translation initiation 54.2 8.9 0.0003 29.0 2.9 53 34-97 27-80 (143)
8 3i4o_A Translation initiation 52.0 9.3 0.00032 26.0 2.5 47 40-97 16-64 (79)
9 2wnv_C C1Q chain C, complement 48.4 23 0.0008 24.9 4.2 51 40-97 48-107 (131)
10 4f3j_A Complement C1Q tumor ne 26.3 87 0.003 22.1 4.3 37 61-97 61-108 (148)
11 2wnv_B C1Q chain B, complement 25.1 84 0.0029 22.1 4.0 51 40-97 47-109 (136)
12 1vco_A CTP synthetase; tetrame 20.3 41 0.0014 29.9 1.8 21 89-113 144-164 (550)
No 1
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Probab=100.00 E-value=5.4e-74 Score=442.18 Aligned_cols=136 Identities=78% Similarity=1.266 Sum_probs=134.6
Q ss_pred CchhhhhHhhhhhccccchhhhhhccCCccc-CCCCCCCCccceEEeeeeecccCCCcccceEEEEEEecCCcEEEEEeC
Q 032641 1 MGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVP 79 (136)
Q Consensus 1 l~~arkl~~~r~~~rw~d~~ykk~~lg~~~k-~pl~g~pq~kGivl~~~~~~pKkPNSA~RK~~rVqLikngk~v~A~IP 79 (136)
|||||||+++|++|||+|++|+++|||+++| |||+|+||++|||++++++||||||||+||||||||++||++||||||
T Consensus 9 l~aarkl~~~r~~~rw~dk~ykk~~lg~~~K~~~l~g~pq~kGivl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIP 88 (145)
T 3u5c_X 9 LNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVP 88 (145)
T ss_dssp SSCHHHHHHHHHHHHTTSHHHHHHHHTHHHHSSSSCSSSEEEEEEEEEEBCBCCTTCCCBCCEEEEEETTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHhcCcccccCccCCCCccCeEEEEEeecccCCCCccceeEEEEEEccCCCEEEEEeC
Confidence 7999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred CCCccCcccccCeEEEeeecCCCCcCCCCCCceEEEEEecChhHHHHhhhhccCCCC
Q 032641 80 NDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 136 (136)
Q Consensus 80 g~G~l~~lqeh~~VLV~G~G~~gg~v~DlPGVrykvvrv~~vsl~al~~gkkekp~~ 136 (136)
||||||||||||+|||+|||++||+++|||||+|+||||+||||+|||+||||||++
T Consensus 89 g~G~l~~lqEh~~VLV~G~G~~Gg~v~DlPGVrykvVrv~~vsl~al~kgkkekp~~ 145 (145)
T 3u5c_X 89 NDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145 (145)
T ss_dssp SSSCGGGCCTTCEEEEECCSSSSSCCSSSTTCCEEEEESTTTCHHHHHHTSCCCCCC
T ss_pred CCCccccCCcCCEEEEEeccccCCccCCCCceeEEEEEECCeeHHHHHhccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999986
No 2
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Probab=100.00 E-value=1.7e-72 Score=432.62 Aligned_cols=133 Identities=72% Similarity=1.193 Sum_probs=131.8
Q ss_pred CchhhhhHhhhhhccccchhhhhhccCCcccCCCCCCCCccceEEeeeeecccCCCcccceEEEEEEecCCcEEEEEeCC
Q 032641 1 MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPN 80 (136)
Q Consensus 1 l~~arkl~~~r~~~rw~d~~ykk~~lg~~~k~pl~g~pq~kGivl~~~~~~pKkPNSA~RK~~rVqLikngk~v~A~IPg 80 (136)
|||||||+++|++|||+|++|+++|||+++|+||+|+||++|||++++++||||||||+||||||||++||++|||||||
T Consensus 9 l~aarkl~~~r~~~rw~d~~ykk~~l~~~~K~pl~g~pq~kGIvl~~~~~~pKkPNSA~RK~arVqL~kNgk~vtAyIPg 88 (142)
T 2xzm_L 9 IRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPM 88 (142)
T ss_dssp SSCHHHHHHHHHHHGGGCHHHHHHHTTCGGGSTTTTCSEEEEEEEEEEEEECCTTCCCEEEEEEEEETTTCCEEEEECCS
T ss_pred HHHHHHHHHHHHHhccchhHHHHHhhcccccCcccCCCccceEEEEEEecccCCCCcccccEEEEEEecCCeEEEEEeCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCcccccCeEEEeeecCCCCcCCCCCCceEEEEEecChhHHHHhhhhccC
Q 032641 81 DGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 133 (136)
Q Consensus 81 ~G~l~~lqeh~~VLV~G~G~~gg~v~DlPGVrykvvrv~~vsl~al~~gkkek 133 (136)
|||||||||||+|||+|||++||+++|||||+|+|||||||||+|||+|||||
T Consensus 89 ~G~l~~lqEh~~VLVrG~G~~ggrv~DlPGVrykvVrv~~vsl~al~kgkkek 141 (142)
T 2xzm_L 89 DGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEK 141 (142)
T ss_dssp SSGGGTCCTTCEEEEEESSSSSSCCTTCSSCCEEEEEESSCBHHHHHSTTTCC
T ss_pred CCcccccccCCEEEEEecccCCCccCCCCCceEEEEEECCeeHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999998
No 3
>3j20_N 30S ribosomal protein S12P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.7e-73 Score=436.24 Aligned_cols=136 Identities=57% Similarity=0.927 Sum_probs=134.2
Q ss_pred CchhhhhHhhhhhccccchhhhhhccCCccc-CCCCCCCCccceEEeeeeecccCCCcccceEEEEEEecCCcEEEEEeC
Q 032641 1 MGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVP 79 (136)
Q Consensus 1 l~~arkl~~~r~~~rw~d~~ykk~~lg~~~k-~pl~g~pq~kGivl~~~~~~pKkPNSA~RK~~rVqLikngk~v~A~IP 79 (136)
|||||||+++|++|||+|++|+++|||+++| +||+|+||++|||++++++||||||||+||||||||++||++||||||
T Consensus 10 l~aarkl~~~r~~~rw~d~~ykk~~lg~~~K~~~l~g~pq~kGIvl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIP 89 (147)
T 3j20_N 10 EFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCP 89 (147)
T ss_dssp STBHHHHHHHHHHHHTTSHHHHHHHHTHHHHHSSSTTCSCEEEEEEEEEEEECCSSCCCEEEEEEEEETTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHhccccccchhhcCCccceEEEEEeecCCCCCCceeeeEEEEEEccCCcEEEEEcC
Confidence 6999999999999999999999999999999 999999999999999999999999999999999999899999999999
Q ss_pred CCCccCcccccCeEEEeeec-CCCCcCCCCCCceEEEEEecChhHHHHhhhhccCCCC
Q 032641 80 NDGCLNYIEENDEVLIAGFG-RKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 136 (136)
Q Consensus 80 g~G~l~~lqeh~~VLV~G~G-~~gg~v~DlPGVrykvvrv~~vsl~al~~gkkekp~~ 136 (136)
||||||||||||+|||+||| ++||+++|||||+|+||+|+||||+|||+||||||++
T Consensus 90 g~Ghln~lqEh~~VLV~G~gg~~gg~v~DlPGVrykvVkv~~vsl~al~kgkkekp~r 147 (147)
T 3j20_N 90 GDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPRR 147 (147)
T ss_dssp SSSGGGTCCTTCEEEEEECSCTTSCCCSSCSSCCEEEEEETTEEHHHHHSTTTCCCCC
T ss_pred CchhhcccccCCEEEEeeccCcCCCccCCCCceeEEEEEECCeeHHHHHhcccccCCC
Confidence 99999999999999999999 9999999999999999999999999999999999985
No 4
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Probab=100.00 E-value=6.2e-44 Score=272.41 Aligned_cols=80 Identities=35% Similarity=0.679 Sum_probs=77.9
Q ss_pred CCCCCCCCccceEEeeeeecccCCCcccceEEEEEEecCCcEEEEEeCCCCccCcccccCeEEEeeecCCCCcCCCCCCc
Q 032641 32 KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGV 111 (136)
Q Consensus 32 ~pl~g~pq~kGivl~~~~~~pKkPNSA~RK~~rVqLikngk~v~A~IPg~G~l~~lqeh~~VLV~G~G~~gg~v~DlPGV 111 (136)
+||+|+||++|||+++++++|||||||+|||||||| +||++|||||||||| ||||||+|||+| |+++|||||
T Consensus 25 ~~l~g~Pq~kGv~l~v~~~~pKKPNSA~RK~arVrL-~ngk~VtAyIPG~Gh--nlqEhs~VLVrG-----grv~DlPGV 96 (135)
T 2vqe_L 25 PALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRL-TSGYEVTAYIPGEGH--NLQEHSVVLIRG-----GRVKDLPGV 96 (135)
T ss_dssp CCSSSCSEEEEEESCCCEECCCTTCCCCEECCEEEE-TTSCEEEEECCSSCC--CCCTTCEEEEEE-----CCCTTSTTC
T ss_pred CcccCCCCcCeEEEEEEecCCCCCchhheeEEEEEc-CCCCEEEEEcCCCCC--ccCcCCEEEEcC-----CCcCCCCCe
Confidence 889999999999999999999999999999999999 999999999999996 999999999998 899999999
Q ss_pred eEEEEEec
Q 032641 112 RFKVVKVS 119 (136)
Q Consensus 112 rykvvrv~ 119 (136)
+|+|||+.
T Consensus 97 rykvVrG~ 104 (135)
T 2vqe_L 97 RYHIVRGV 104 (135)
T ss_dssp CEEECTTS
T ss_pred eEEEEeEe
Confidence 99999964
No 5
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.70 E-value=8.1 Score=27.82 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=36.4
Q ss_pred CCCccceEEeeeeecccCCCcccceEEEEEEecCCcEEEEEeCCCCc-cCcccccCeEEEee
Q 032641 37 SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGC-LNYIEENDEVLIAG 97 (136)
Q Consensus 37 ~pq~kGivl~~~~~~pKkPNSA~RK~~rVqLikngk~v~A~IPg~G~-l~~lqeh~~VLV~G 97 (136)
.-|.-|.|++.. ||. -.+|+| -||.+++|+|||-=. --.|.+.|.|+|+=
T Consensus 14 ege~~g~V~~~l------gn~----~f~V~l-~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~ 64 (111)
T 2dgy_A 14 NQQQIVRVLRTP------GNN----LHEVET-AQGQRFLVSMPSKYRKNIWIKRGDFLIVDP 64 (111)
T ss_dssp SSCEEEEEEECC------SSS----EEEEEC-TTSCEEEEECCTTCCSCCCCCSSCEEEEEE
T ss_pred CCeEEEEEEEeC------CCC----EEEEEe-CCCCEEEEEechhhcccEEEcCCCEEEEEe
Confidence 346666666654 444 467898 899999999998533 12378999999984
No 6
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=60.42 E-value=4.7 Score=28.71 Aligned_cols=49 Identities=22% Similarity=0.303 Sum_probs=33.8
Q ss_pred CCccceEEeeeeecccCCCcccceEEEEEEecCCcEEEEEeCCCCc-cCcccccCeEEEee
Q 032641 38 SHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGC-LNYIEENDEVLIAG 97 (136)
Q Consensus 38 pq~kGivl~~~~~~pKkPNSA~RK~~rVqLikngk~v~A~IPg~G~-l~~lqeh~~VLV~G 97 (136)
-|.-|.|++.. ||.- .+|+| -||.+++|+|||-=. ---|.+.|.|+|+=
T Consensus 20 ~e~~g~V~~~l------gn~~----~~V~l-~nG~~~la~i~GKmRk~IwI~~GD~VlVe~ 69 (102)
T 1jt8_A 20 NEILGIIEQML------GASR----VRVRC-LDGKTRLGRIPGRLKNRIWVREGDVVIVKP 69 (102)
T ss_dssp CCEEEEEECSS------CSSE----EEEEE-ETTEEEEEECCHHHHHHHCCCSCEEEEECC
T ss_pred CEEEEEEEEEc------CCCE----EEEEE-CCCCEEEEEEcccceeeEEecCCCEEEEEe
Confidence 35555555543 4543 67899 899999999998321 01377899999973
No 7
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=54.24 E-value=8.9 Score=28.98 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=37.9
Q ss_pred CCCCCCccceEEeeeeecccCCCcccceEEEEEEecCCcEEEEEeCCCCc-cCcccccCeEEEee
Q 032641 34 FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGC-LNYIEENDEVLIAG 97 (136)
Q Consensus 34 l~g~pq~kGivl~~~~~~pKkPNSA~RK~~rVqLikngk~v~A~IPg~G~-l~~lqeh~~VLV~G 97 (136)
+-..-|.-|.|++.+ ||.- .+|+| -||.+++|+|||-=. ---|.+.|.|||+=
T Consensus 27 ~p~ege~~g~V~e~l------gn~~----f~V~l-~nG~~~La~I~GKmRk~IwI~~GD~VlVe~ 80 (143)
T 1d7q_A 27 FKEDGQEYAQVIKML------GNGR----LEAMC-FDGVKRLCHIRGKLRKKVWINTSDIILVGL 80 (143)
T ss_dssp CCCTTEEEEEEEEEC------SSSE----EEEEE-TTTEEEEEECCSGGGGSCCCCTTCEEEEEC
T ss_pred CCCCCEEEEEEEEEc------CCCE----EEEEe-CCCCEEEEEecccceeeEEecCCCEEEEee
Confidence 334457777777765 4443 67999 899999999998422 12477899999973
No 8
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=51.97 E-value=9.3 Score=26.03 Aligned_cols=47 Identities=30% Similarity=0.470 Sum_probs=33.0
Q ss_pred ccceEEeeeeecccCCCcccceEEEEEEecCCcEEEEEeCCCCccC--cccccCeEEEee
Q 032641 40 AKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLN--YIEENDEVLIAG 97 (136)
Q Consensus 40 ~kGivl~~~~~~pKkPNSA~RK~~rVqLikngk~v~A~IPg~G~l~--~lqeh~~VLV~G 97 (136)
..|+|++.+ ||+- .+|+| -||..+.|+|+|-=-.| -+-+.|.|+|+=
T Consensus 16 ~~G~Vik~l------~n~~----f~V~l-~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~ 64 (79)
T 3i4o_A 16 VEGRVVEPL------PNAM----FRIEL-ENGHKVLAHISGKMRQHYIRILPEDRVVVEL 64 (79)
T ss_dssp EEEEEEEEE------TTTE----EEEEE-TTSCEEEEEECHHHHHTTCCCCTTCEEEEEE
T ss_pred EEEEEEEEc------CCCE----EEEEe-CCCCEEEEEeCcceecCCccCCCCCEEEEEE
Confidence 345555543 5554 46888 89999999999843211 378899999974
No 9
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=48.38 E-value=23 Score=24.85 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=35.4
Q ss_pred ccceEEeeeeecccCCCcccceEEEEEEecCCcEEEEEeCCCCc---------cCcccccCeEEEee
Q 032641 40 AKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGC---------LNYIEENDEVLIAG 97 (136)
Q Consensus 40 ~kGivl~~~~~~pKkPNSA~RK~~rVqLikngk~v~A~IPg~G~---------l~~lqeh~~VLV~G 97 (136)
..|+=.=.+.+.... -+.|.|.+||..+.+|....+. +-.|++.|+|-|+-
T Consensus 48 ~~G~Y~Fs~~~~~~~-------~~~v~L~~Ng~~~~~~~~~~~~~~~~~S~~~~L~L~~GD~V~v~~ 107 (131)
T 2wnv_C 48 VPGLYYFVYHASHTA-------NLCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLRLQVGEEVWLAV 107 (131)
T ss_dssp SCEEEEEEEEEEESS-------CEEEEEEETTEEEEEEEECCSSSCEEEEEEEEEEECTTCEEEEEE
T ss_pred cCCEEEEEEEEEECC-------eEEEEEEECCeEEEEEEecCCCcccEEeeeEEEEECCCCEEEEEE
Confidence 566665556555431 4789999999888888663221 44689999999875
No 10
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=26.32 E-value=87 Score=22.09 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=25.5
Q ss_pred eEEEEEEecCCcEEEEEeCCC-----------CccCcccccCeEEEee
Q 032641 61 KCARVQLIKNGKKIAAFVPND-----------GCLNYIEENDEVLIAG 97 (136)
Q Consensus 61 K~~rVqLikngk~v~A~IPg~-----------G~l~~lqeh~~VLV~G 97 (136)
..+.+.|.+||..+....-.. ..+-.|++.|+|-|+=
T Consensus 61 ~~~~~~L~kNg~~~~~~~~~~~~~~~~~~~s~s~il~L~~GD~V~v~~ 108 (148)
T 4f3j_A 61 ASLQFDLVKNGESIASFFQFFGGWPKPASLSGGAMVRLEPEDQVWVQV 108 (148)
T ss_dssp EEEEEEEEETTEEEEEEEECCCSCSSCEEEEEEEEEEECTTCEEEEEC
T ss_pred CceEEEEEECCeEEEEEEeccCCCCccceEeeEEEEEcCCCCEEEEEE
Confidence 346789999998876554211 1234689999999873
No 11
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=25.05 E-value=84 Score=22.10 Aligned_cols=51 Identities=16% Similarity=0.295 Sum_probs=34.1
Q ss_pred ccceEEeeeeecccCCCcccceEEEEEEecCCc---EEEEEeCC-C--------CccCcccccCeEEEee
Q 032641 40 AKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGK---KIAAFVPN-D--------GCLNYIEENDEVLIAG 97 (136)
Q Consensus 40 ~kGivl~~~~~~pKkPNSA~RK~~rVqLikngk---~v~A~IPg-~--------G~l~~lqeh~~VLV~G 97 (136)
..|+=.=.+.+.... -+.|+|.+||. .+.+|... . ..+-.|++.|+|-|+-
T Consensus 47 ~~G~Y~Fs~~~~~~~-------~~~v~L~~Ng~~v~~~~~~~~~~~~~~~~~S~~~~L~L~~GD~V~v~~ 109 (136)
T 2wnv_B 47 VPGLYYFTYHASSRG-------NLCVNLMRGRERAQKVVTFCDYAYNTFQVTTGGMVLKLEQGENVFLQA 109 (136)
T ss_dssp SCEEEEEEEEEEESS-------CEEEEEEEESSSCEEEEEEEECCSSSCEEEEEEEEEEECTTCEEEEEE
T ss_pred cCeEEEEEEEEEECC-------eEEEEEEECCcceEEEEEEEecCCCcccEEeeeEEEEECCCCEEEEEE
Confidence 466655556555541 47889999996 56677642 1 1244699999999985
No 12
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=20.30 E-value=41 Score=29.90 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.4
Q ss_pred ccCeEEEeeecCCCCcCCCCCCceE
Q 032641 89 ENDEVLIAGFGRKGHAVGDIPGVRF 113 (136)
Q Consensus 89 eh~~VLV~G~G~~gg~v~DlPGVry 113 (136)
++|.|+|+|. |.++||-+..|
T Consensus 144 ~~d~~i~e~~----gt~~di~~~~~ 164 (550)
T 1vco_A 144 KAEIVVVEVG----GTVGDIESLPF 164 (550)
T ss_dssp TCSEEEEEEC----SCTTSSTTHHH
T ss_pred CCCEEEEECC----CChhHhhhHHH
Confidence 6899999995 78999987654
Done!