BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032643
         (136 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
           Phosphoribosyltransferase From Bacillus Anthracis Str.
           'ames Ancestor'
 pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
           Phosphoribosyltransferase From Bacillus Anthracis Str.
           'ames Ancestor' In Complex With
           5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
 pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
           Phosphoribosyltransferase From Bacillus Anthracis Str.
           'ames Ancestor' In Complex With
           5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
 pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
           Phosphoribosyltransferase From Bacillus Anthracis Str.
           'ames Ancestor' In Complex With
           5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
          Length = 234

 Score = 27.3 bits (59), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 6   DQLDLACCYIKQLRERIDKLNRMKGQAMKSIK 37
           D++DL  CY++   +   K N+++G+A K  K
Sbjct: 108 DRMDLPMCYVRSKAKGHGKGNQIEGKAEKGQK 139


>pdb|1DNV|A Chain A, Parvovirus (Densovirus) From Galleria Mellonella
          Length = 437

 Score = 26.9 bits (58), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 23  DKLNRMKGQAMKSIKPNSSNNILDETNNICSNLPVVELRDLGSSIE 68
           D L  M+G A+ +  P ++ N+ + T+N+  N P  +L ++ S IE
Sbjct: 284 DNLVNMRG-AVVTNPPEATQNVAESTHNLTRNFP-ADLFNIYSDIE 327


>pdb|2CV6|A Chain A, Crystal Structure Of 8salpha Globulin, The Major Seed
           Storage Protein Of Mungbean
          Length = 424

 Score = 26.6 bits (57), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 24/41 (58%)

Query: 76  QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAK 116
           QRNF+  E  +++ E   +V+  +F   G+K+   ++ Q++
Sbjct: 358 QRNFLAGEKDNVISEIPTEVLDVTFPASGEKVQKLIKKQSE 398


>pdb|1ICX|A Chain A, Crystal Structure Of Pathogenesis-Related Protein
           Llpr10.1a From Yellow Lupine
          Length = 155

 Score = 25.8 bits (55), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 96  VSASFSTIGDKIFHTVRAQAKISRLGVETSI 126
           ++  F T GD +  TVR QAK   LG+  +I
Sbjct: 115 INVKFHTKGDVLSETVRDQAKFKGLGLFKAI 145


>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
          Length = 426

 Score = 25.8 bits (55), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 14  YIKQLRERIDKLNRMKGQAMKSIKPNSSN 42
           YIK+L E  D LN+   +A+K I+    N
Sbjct: 248 YIKELNEERDILNKDLNKALKDIEKRPEN 276


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,310,517
Number of Sequences: 62578
Number of extensions: 112705
Number of successful extensions: 319
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 315
Number of HSP's gapped (non-prelim): 7
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)