BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032643
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STJ6|BH126_ARATH Transcription factor bHLH126 OS=Arabidopsis thaliana GN=BHLH126
PE=2 SV=1
Length = 221
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 15 IKQLRERIDKLNRMKGQAMKSIKPNSSNNILDETNNICSNLP-VVELRDLGSSIEVVLIS 73
IK+L R D+L+R GQ KS P+ D + + P V ++ S +EVV+ S
Sbjct: 98 IKELSARRDELSRETGQGYKS-NPDPGKTGSD----VGKSEPATVMVQPHVSGLEVVVSS 152
Query: 74 GV--QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLG 121
L +V+ ++E+G +V+S+ + + D++ HT+ Q +++ G
Sbjct: 153 NSSGPEALPLSKVLETIQEKGLEVMSSFTTRVNDRLMHTI--QVEVNSFG 200
>sp|Q8DQZ1|LACG1_STRR6 6-phospho-beta-galactosidase 1 OS=Streptococcus pneumoniae (strain
ATCC BAA-255 / R6) GN=lacG1 PE=3 SV=1
Length = 470
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 30 GQAMKSIKPNSSNNILDETNNIC---SNL-PVVELRDLGSSIEVVLISGVQRNF 79
G A+K +KP N+I+D++ I +L V+E RD G +I+ I +Q F
Sbjct: 380 GTALKEVKPEGENDIIDDSKRIRYIEQHLHKVLEARDRGVNIQGYFIWSLQDQF 433
>sp|Q97SA9|LACG1_STRPN 6-phospho-beta-galactosidase 1 OS=Streptococcus pneumoniae serotype
4 (strain ATCC BAA-334 / TIGR4) GN=lacG1 PE=3 SV=1
Length = 470
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 30 GQAMKSIKPNSSNNILDETNNIC---SNL-PVVELRDLGSSIEVVLISGVQRNF 79
G A+K +KP N+I+D++ I +L V+E RD G +I+ I +Q F
Sbjct: 380 GTALKEVKPEGENDIIDDSKRIRYIEQHLHKVLEARDRGVNIQGYFIWSLQDQF 433
>sp|Q9STJ7|BH118_ARATH Transcription factor bHLH118 OS=Arabidopsis thaliana GN=BHLH118
PE=2 SV=1
Length = 163
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 20/120 (16%)
Query: 3 SQEDQLDLACCYIKQLRERIDKLNR-------MKGQAMKSIKPNSSNNILDETNNICSNL 55
S DQ+ A YI L+ I +N + G++ +S N I +N++
Sbjct: 38 STSDQVKGAVNYIDYLQRNIKDINSKRDDLVLLSGRSFRSSNEQEWNEI---SNHVV--- 91
Query: 56 PVVELRDLGSSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQA 115
+R IE+VL S +Q F V+ +L E G V+ S++ D++ HT++A+
Sbjct: 92 ----IRPCLVGIEIVL-SILQTPFS--SVLQVLREHGLYVLGYICSSVNDRLIHTLQAEV 144
>sp|Q9FLI1|BH036_ARATH Transcription factor bHLH36 OS=Arabidopsis thaliana GN=BHLH36 PE=2
SV=1
Length = 174
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 8/118 (6%)
Query: 3 SQEDQLDLACCYIKQLRERIDKLNRMKGQAM---KSIKPNSSNNILDETNNICSNLPVVE 59
S DQ++ A YIK L+ +I +L+ + M + SSN E + S V
Sbjct: 38 STSDQVNEAVNYIKYLQRKIKELSVRRDDLMVLSRGSLLGSSNGDFKEDVEMISGKNHVV 97
Query: 60 LRDLGSSIEVVLIS---GVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQ 114
+R +E++L S G Q F V+ +L E G ++++ S + D++ +T++A+
Sbjct: 98 VRQCLVGVEIMLSSRCCGGQPRF--SSVLQVLSEYGLCLLNSISSIVDDRLVYTIQAE 153
>sp|A6TLU4|DNLJ_ALKMQ DNA ligase OS=Alkaliphilus metalliredigens (strain QYMF) GN=ligA
PE=3 SV=1
Length = 660
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 66 SIEVVLISGVQRNFMLYEVISILEEEGAQVVSA-----SFSTIGDKIFHTVRAQAKISRL 120
S + V+++G N+ E+ ++LEE+GA+V + F GD ++ +I
Sbjct: 583 SGKTVVVTGTLENYGRKEIQTLLEEQGAKVSGSISKNTDFVIAGDNAGSKLKKAQEILES 642
Query: 121 GVETSI 126
GVET++
Sbjct: 643 GVETNL 648
>sp|Q1LNG0|GLND_RALME [Protein-PII] uridylyltransferase OS=Ralstonia metallidurans
(strain CH34 / ATCC 43123 / DSM 2839) GN=glnD PE=3 SV=1
Length = 857
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 56 PVVELR-DLGSSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQ 114
P V+LR D ++ +S R +LY + +L + V SA +T+G+++
Sbjct: 774 PRVDLRPDERGQYYLLSVSANDRTGLLYAIARVLAKHRVSVHSARINTLGERVEDVFLVD 833
Query: 115 AKISRLGVETSIACQRLHDLVD 136
SRL + + Q DL+D
Sbjct: 834 G--SRLAADNRLQIQLEQDLLD 853
>sp|Q6CQ06|GRC3_KLULA Polynucleotide 5'-hydroxyl-kinase GRC3 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=GRC3 PE=3 SV=1
Length = 631
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 51 ICSNLPVVELRDLGSSIEVVLISGVQRNFMLYEVISILEEEGAQV-VSASFSTIGD--KI 107
+ S LP ELRD+ + + L+ G+ R + + +IS + + + +S +ST+ D +I
Sbjct: 182 LSSLLP--ELRDMWGPLNISLLPGIARKQLTFNIISKISDSVRILDISTEWSTVIDEMRI 239
Query: 108 FHTVRAQ 114
FH +Q
Sbjct: 240 FHANSSQ 246
>sp|Q9M1K1|ORG2_ARATH Transcription factor ORG2 OS=Arabidopsis thaliana GN=ORG2 PE=1 SV=1
Length = 253
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 14 YIKQLRERIDKLNRMKGQAMKSIKPNSSNNILD--ETNNICSNLPVVELRDLGSSIEVVL 71
YI +L++++ +L + K + + + + D + + S L V LG + +V
Sbjct: 119 YIPELQQQVKRLIQKKEEILVRVSGQRDFELYDKQQPKAVASYLSTVSATRLGDNEVMVQ 178
Query: 72 ISGVQ-RNFMLYEVISILEEEGAQVVSASFS-TIGDKIFHTVRAQAK 116
+S + NF + V+ +EE+G +V S S + G+++F+T+ Q +
Sbjct: 179 VSSSKIHNFSISNVLGGIEEDGFVLVDVSSSRSQGERLFYTLHLQVE 225
>sp|Q97E92|GLMU_CLOAB Bifunctional protein GlmU OS=Clostridium acetobutylicum (strain
ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=glmU PE=3 SV=1
Length = 456
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 47 ETNNICSNLPVVELRDLGSSIEVVLISGVQRNFMLYEVISILEEEGAQV--VSASFSTI 103
+ I S + +++ L S++ + + VQ + L +VI ILEEEGA++ +S F I
Sbjct: 165 KVKEINSAMYCFDIKSLLESLDKLNNNNVQGEYYLTDVIGILEEEGAKIGAISVPFEEI 223
>sp|A9VTC5|PYRK_BACWK Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit
OS=Bacillus weihenstephanensis (strain KBAB4) GN=pyrK
PE=3 SV=1
Length = 259
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 10 LACCYIKQLRERIDKLNRMKGQAMKSIKPNSSNNILDETNNICSNLPVVELRDLGSSIEV 69
++ C + Q + L R +GQ K++ ++D + PV E S
Sbjct: 55 ISICNVDQDKNEFTMLYRAEGQGTKTLAKRKQGELVDVLGPLGHGFPVEEAE---SGQTA 111
Query: 70 VLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIA 127
+L+ G LYE+ L +G +V+ D +F+ + K + LG +T +A
Sbjct: 112 LLVGGGIGVPPLYELSQRLVAKGVRVIHILGFQTKDVVFY----EEKFAELG-DTYVA 164
>sp|Q99K01|PDXD1_MOUSE Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Mus musculus GN=Pdxdc1 PE=1 SV=2
Length = 787
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 9 DLACCYIKQLRERIDKLNRMKGQAMKSIKPNSSNNILD-ETNNICSNL-PVVELRDLGSS 66
++A + + R D LNR G+ +K + P ++D E + C P++ LG+
Sbjct: 412 NIAPAAVGRERHSCDALNRWLGEQLKQLVPQCGLTVIDLEVDGTCVRFSPLMTAEGLGTR 471
Query: 67 IEVV--LISGVQRNFMLYEVISILEEEGAQVVSAS 99
E V LI+ +Q + L EE Q V +
Sbjct: 472 GEDVDQLITCIQSKLPVLTCTLQLREEFKQEVEGT 506
>sp|P0A1T4|YDHZ_SALTY Uncharacterized protein YdhZ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=ydhZ PE=4 SV=1
Length = 70
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 37 KPNSSNNILDETNNICSNLPVVELRDLGSSIEVVLISGVQRNFMLYEVI--SILEEEGAQ 94
KP + + E + + V+E+RDLG + ++I+GV R + + I S LE++ +
Sbjct: 3 KPTKDDELYREMCRVVGKV-VLEMRDLGQEPKYIVIAGVLRTALANQRIQRSALEKQAME 61
Query: 95 VV 96
V
Sbjct: 62 TV 63
>sp|P0A1T5|YDHZ_SALTI Uncharacterized protein YdhZ OS=Salmonella typhi GN=ydhZ PE=4
SV=1
Length = 70
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 37 KPNSSNNILDETNNICSNLPVVELRDLGSSIEVVLISGVQRNFMLYEVI--SILEEEGAQ 94
KP + + E + + V+E+RDLG + ++I+GV R + + I S LE++ +
Sbjct: 3 KPTKDDELYREMCRVVGKV-VLEMRDLGQEPKYIVIAGVLRTALANQRIQRSALEKQAME 61
Query: 95 VV 96
V
Sbjct: 62 TV 63
>sp|Q8U9L9|GLMM_AGRT5 Phosphoglucosamine mutase OS=Agrobacterium tumefaciens (strain C58
/ ATCC 33970) GN=glmM PE=3 SV=2
Length = 450
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 90 EEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRL 131
E+ +V + + T GD + ++ AK+ R G+ S C++
Sbjct: 328 EQSGHIVLSDYGTTGDGLVAALQVLAKVKRSGLTVSEVCRKF 369
>sp|A7MBC2|PDXD1_BOVIN Pyridoxal-dependent decarboxylase domain-containing protein 1
OS=Bos taurus GN=PDXDC1 PE=2 SV=1
Length = 787
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 19 RERIDKLNRMKGQAMKSIKPNSSNNILD-ETNNICSNL-PVVELRDLGSSIEVV--LISG 74
R D LNR G+ +K + P S ++D E C P++ LG+ E V L++
Sbjct: 423 RHSCDALNRWLGEQLKQLVPMSGLTVMDLEVEGTCVRFSPLMTAAVLGTRGEDVDQLVAC 482
Query: 75 VQRNFMLYEVISILEEEGAQVVSAS 99
VQ + L EE Q V A+
Sbjct: 483 VQSKLPVLTCTLQLREEFKQEVEAT 507
>sp|Q11DI7|GLMM_MESSB Phosphoglucosamine mutase OS=Mesorhizobium sp. (strain BNC1)
GN=glmM PE=3 SV=2
Length = 451
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 85 ISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRL 131
++I E+ VV + FST GD + ++ A I RL S C++
Sbjct: 323 LNIGGEQSGHVVLSDFSTSGDGLVTALQVLAHIKRLNKPASEVCRKF 369
>sp|A7GRL0|PYRK_BACCN Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit
OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98)
GN=pyrK PE=3 SV=1
Length = 259
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 10 LACCYIKQLRERIDKLNRMKGQAMKSIKPNSSNNILDETNNICSNLPVVELRDLGSSIEV 69
++ C + Q + L R +GQ K++ ++D + PV E +
Sbjct: 55 ISICNVDQEKNEFTMLYRAEGQGTKTLAKRKQGELVDVLGPLGHGFPVEEAE---AGQTA 111
Query: 70 VLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIA 127
+L+ G LYE+ L +G +V+ D +F+ + K + LG +T +A
Sbjct: 112 LLVGGGIGVPPLYELSQRLVAKGVRVIHILGFQTKDVVFY----EEKFAELG-DTYVA 164
>sp|B7IUP5|PYRK_BACC2 Dihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit
OS=Bacillus cereus (strain G9842) GN=pyrK PE=3 SV=1
Length = 259
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 10 LACCYIKQLRERIDKLNRMKGQAMKSIKPNSSNNILDETNNICSNLPVVELRDLGSSIEV 69
++ C + Q + L R +GQ K++ ++D + PV E +
Sbjct: 55 ISICNVDQEKNEFTMLYRAEGQGTKTLATRKQGEMIDVLGPLGHGFPVEEAE---AGQTA 111
Query: 70 VLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIA 127
+L+ G LYE+ L +G +V+ D +F+ + K + LG +T +A
Sbjct: 112 LLVGGGIGVPPLYELSQRLVAKGVRVIHILGFQTKDVVFY----EEKFAELG-DTYVA 164
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,664,623
Number of Sequences: 539616
Number of extensions: 1578471
Number of successful extensions: 5753
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 5723
Number of HSP's gapped (non-prelim): 56
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)