Query 032643
Match_columns 136
No_of_seqs 102 out of 146
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 04:05:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04895 ACT_ACR_1 ACT domain-c 97.8 0.00038 8.2E-09 46.3 8.8 65 69-134 3-67 (72)
2 cd04897 ACT_ACR_3 ACT domain-c 97.6 0.0011 2.3E-08 44.4 8.8 66 69-135 3-72 (75)
3 cd04900 ACT_UUR-like_1 ACT dom 97.5 0.0019 4.2E-08 41.9 9.4 64 68-133 3-67 (73)
4 cd04899 ACT_ACR-UUR-like_2 C-t 97.4 0.0024 5.1E-08 40.4 9.0 62 72-134 5-69 (70)
5 cd04925 ACT_ACR_2 ACT domain-c 97.4 0.0026 5.6E-08 41.7 9.3 62 72-134 5-71 (74)
6 cd04927 ACT_ACR-like_2 Second 97.3 0.0042 9.1E-08 41.0 9.0 45 72-116 5-50 (76)
7 cd04926 ACT_ACR_4 C-terminal 97.2 0.0071 1.5E-07 39.3 9.0 65 67-134 2-66 (72)
8 cd04896 ACT_ACR-like_3 ACT dom 97.1 0.0059 1.3E-07 40.9 8.5 63 71-135 4-72 (75)
9 cd04893 ACT_GcvR_1 ACT domains 97.1 0.0075 1.6E-07 39.7 8.6 61 70-134 4-64 (77)
10 cd04928 ACT_TyrKc Uncharacteri 97.0 0.015 3.3E-07 38.1 9.1 65 68-136 3-68 (68)
11 PF13740 ACT_6: ACT domain; PD 96.9 0.01 2.2E-07 39.0 7.9 59 72-134 7-65 (76)
12 cd04870 ACT_PSP_1 CT domains f 96.8 0.013 2.8E-07 38.2 7.9 61 71-134 3-63 (75)
13 PRK00194 hypothetical protein; 96.5 0.016 3.5E-07 38.8 6.9 64 69-134 5-68 (90)
14 cd04872 ACT_1ZPV ACT domain pr 96.4 0.019 4.2E-07 38.4 6.7 63 70-134 4-66 (88)
15 cd04869 ACT_GcvR_2 ACT domains 96.4 0.046 9.9E-07 35.5 8.3 63 71-134 3-69 (81)
16 cd04873 ACT_UUR-ACR-like ACT d 96.3 0.084 1.8E-06 32.7 9.0 46 72-117 5-50 (70)
17 cd04875 ACT_F4HF-DF N-terminal 96.2 0.059 1.3E-06 34.7 8.1 64 70-134 2-66 (74)
18 PF13291 ACT_4: ACT domain; PD 96.2 0.049 1.1E-06 35.5 7.7 66 66-134 4-72 (80)
19 PRK03059 PII uridylyl-transfer 96.1 0.054 1.2E-06 50.5 10.4 82 54-135 772-854 (856)
20 PF01842 ACT: ACT domain; Int 96.1 0.071 1.5E-06 32.7 7.8 59 74-135 7-65 (66)
21 PRK00275 glnD PII uridylyl-tra 96.0 0.088 1.9E-06 49.4 11.1 81 54-135 800-885 (895)
22 PRK03381 PII uridylyl-transfer 95.9 0.12 2.5E-06 47.8 11.2 80 54-135 586-666 (774)
23 PRK04374 PII uridylyl-transfer 95.8 0.12 2.5E-06 48.5 11.0 81 54-135 782-866 (869)
24 PRK05092 PII uridylyl-transfer 95.8 0.12 2.7E-06 48.5 11.0 82 53-135 828-914 (931)
25 PRK05007 PII uridylyl-transfer 95.6 0.099 2.1E-06 49.0 9.7 80 54-134 794-877 (884)
26 smart00353 HLH helix loop heli 94.9 0.025 5.5E-07 34.2 2.5 22 2-23 31-52 (53)
27 PRK03381 PII uridylyl-transfer 94.9 0.31 6.7E-06 45.1 10.5 78 54-134 693-771 (774)
28 TIGR01693 UTase_glnD [Protein- 94.6 0.5 1.1E-05 43.9 11.2 81 54-135 654-740 (850)
29 cd04887 ACT_MalLac-Enz ACT_Mal 94.6 0.49 1.1E-05 29.9 8.1 59 73-134 5-64 (74)
30 PRK01759 glnD PII uridylyl-tra 94.2 0.38 8.2E-06 45.0 9.5 80 54-134 769-852 (854)
31 COG2844 GlnD UTP:GlnB (protein 94.2 0.25 5.5E-06 46.1 8.2 79 53-133 776-855 (867)
32 PRK05007 PII uridylyl-transfer 94.1 0.76 1.7E-05 43.2 11.3 80 54-135 687-772 (884)
33 TIGR01693 UTase_glnD [Protein- 94.1 0.48 1E-05 44.1 9.9 80 54-134 765-848 (850)
34 PRK01759 glnD PII uridylyl-tra 94.1 0.75 1.6E-05 43.0 11.2 80 54-135 663-748 (854)
35 cd04888 ACT_PheB-BS C-terminal 93.5 0.63 1.4E-05 29.4 7.1 60 73-134 6-66 (76)
36 PRK04374 PII uridylyl-transfer 93.4 0.96 2.1E-05 42.5 10.7 81 54-135 675-759 (869)
37 cd04886 ACT_ThrD-II-like C-ter 93.4 0.87 1.9E-05 27.8 7.5 56 75-133 6-66 (73)
38 cd04880 ACT_AAAH-PDT-like ACT 93.3 1.3 2.8E-05 28.4 8.3 59 75-133 7-66 (75)
39 PRK05092 PII uridylyl-transfer 93.2 1.3 2.9E-05 41.7 11.4 80 54-134 718-803 (931)
40 PRK00275 glnD PII uridylyl-tra 92.4 1.8 3.9E-05 40.8 11.1 80 54-134 687-776 (895)
41 cd00083 HLH Helix-loop-helix d 92.3 0.12 2.6E-06 31.7 2.3 22 2-23 39-60 (60)
42 PF00010 HLH: Helix-loop-helix 92.2 0.14 3.1E-06 31.3 2.4 18 2-19 38-55 (55)
43 cd04901 ACT_3PGDH C-terminal A 92.0 0.2 4.4E-06 31.1 3.1 58 71-134 3-60 (69)
44 cd04882 ACT_Bt0572_2 C-termina 91.9 1 2.2E-05 27.4 6.2 50 76-133 8-59 (65)
45 PRK06027 purU formyltetrahydro 91.7 1.6 3.4E-05 35.8 8.7 62 71-134 10-73 (286)
46 PRK03059 PII uridylyl-transfer 91.6 2.5 5.5E-05 39.6 10.9 64 54-118 664-730 (856)
47 cd04879 ACT_3PGDH-like ACT_3PG 91.6 1.8 3.8E-05 26.1 7.0 55 74-134 6-62 (71)
48 PRK13011 formyltetrahydrofolat 91.6 1.5 3.2E-05 36.0 8.5 61 72-134 12-73 (286)
49 TIGR00655 PurU formyltetrahydr 91.4 1.8 3.9E-05 35.5 8.8 63 69-133 2-66 (280)
50 cd02116 ACT ACT domains are co 91.4 1.4 3.1E-05 24.2 6.9 54 75-131 6-59 (60)
51 cd04902 ACT_3PGDH-xct C-termin 91.4 0.99 2.1E-05 28.1 5.8 57 72-134 4-62 (73)
52 cd04876 ACT_RelA-SpoT ACT dom 91.4 1.8 3.9E-05 25.2 7.1 58 74-134 5-63 (71)
53 PRK08577 hypothetical protein; 91.1 2.1 4.6E-05 30.9 8.1 60 73-134 62-123 (136)
54 cd04877 ACT_TyrR N-terminal AC 90.9 1.4 2.9E-05 28.3 6.3 56 73-134 6-61 (74)
55 cd04903 ACT_LSD C-terminal ACT 90.7 2.5 5.3E-05 25.6 7.5 55 74-134 6-62 (71)
56 PLN03217 transcription factor 90.2 0.68 1.5E-05 32.0 4.4 33 3-35 46-78 (93)
57 PRK04435 hypothetical protein; 90.2 2.5 5.4E-05 31.3 7.9 75 58-134 59-135 (147)
58 cd04874 ACT_Af1403 N-terminal 90.1 2.9 6.3E-05 25.4 8.0 57 73-133 6-62 (72)
59 cd04905 ACT_CM-PDT C-terminal 88.4 5.1 0.00011 25.9 8.3 42 76-117 10-52 (80)
60 PRK13010 purU formyltetrahydro 88.2 3.1 6.8E-05 34.2 7.8 65 69-134 11-77 (289)
61 PRK11589 gcvR glycine cleavage 87.8 3.5 7.6E-05 32.0 7.5 63 71-134 99-165 (190)
62 cd04908 ACT_Bt0572_1 N-termina 87.3 4.4 9.5E-05 25.2 6.6 50 76-133 10-59 (66)
63 PRK07334 threonine dehydratase 86.9 4.4 9.5E-05 34.4 8.3 67 65-134 323-395 (403)
64 cd04884 ACT_CBS C-terminal ACT 86.3 6 0.00013 24.9 6.9 28 76-103 8-35 (72)
65 cd04878 ACT_AHAS N-terminal AC 85.7 5.8 0.00013 23.9 7.2 57 74-134 7-65 (72)
66 PRK11589 gcvR glycine cleavage 84.8 3 6.6E-05 32.3 5.7 59 72-134 13-71 (190)
67 PF13710 ACT_5: ACT domain; PD 84.5 4.7 0.0001 25.5 5.6 59 76-136 1-59 (63)
68 COG3830 ACT domain-containing 83.3 2 4.3E-05 29.8 3.7 64 69-134 5-68 (90)
69 cd04881 ACT_HSDH-Hom ACT_HSDH_ 82.4 9 0.00019 23.4 6.6 58 74-134 7-66 (79)
70 cd04889 ACT_PDH-BS-like C-term 81.9 6.5 0.00014 23.4 5.4 41 75-115 6-47 (56)
71 COG2844 GlnD UTP:GlnB (protein 77.9 13 0.00029 35.1 8.1 76 57-134 675-751 (867)
72 cd04931 ACT_PAH ACT domain of 77.7 19 0.00042 24.5 7.3 43 75-117 22-65 (90)
73 PRK11092 bifunctional (p)ppGpp 77.0 21 0.00046 33.0 9.2 75 57-134 612-691 (702)
74 PF05088 Bac_GDH: Bacterial NA 76.0 21 0.00046 36.0 9.4 68 67-135 490-561 (1528)
75 PRK10872 relA (p)ppGpp synthet 75.3 26 0.00057 32.7 9.4 75 57-134 652-732 (743)
76 PF08946 Osmo_CC: Osmosensory 75.2 5 0.00011 24.4 3.2 21 15-35 21-41 (46)
77 COG4492 PheB ACT domain-contai 74.1 25 0.00054 26.4 7.3 75 58-134 62-138 (150)
78 PF06005 DUF904: Protein of un 73.3 8.9 0.00019 25.3 4.4 27 6-32 11-37 (72)
79 PF14992 TMCO5: TMCO5 family 73.0 5.5 0.00012 32.9 4.0 25 8-32 146-170 (280)
80 cd04904 ACT_AAAH ACT domain of 73.0 22 0.00047 22.8 6.7 43 75-117 8-51 (74)
81 TIGR00119 acolac_sm acetolacta 72.1 17 0.00037 27.4 6.2 58 75-136 9-68 (157)
82 PRK11895 ilvH acetolactate syn 72.1 17 0.00036 27.6 6.2 58 75-136 10-69 (161)
83 COG3074 Uncharacterized protei 72.1 7.8 0.00017 25.8 3.8 29 6-34 11-39 (79)
84 cd04883 ACT_AcuB C-terminal AC 69.0 24 0.00052 21.7 8.2 52 76-133 10-63 (72)
85 PRK11152 ilvM acetolactate syn 68.4 28 0.00061 23.1 6.0 58 76-136 12-69 (76)
86 TIGR00691 spoT_relA (p)ppGpp s 68.3 49 0.0011 30.5 9.4 74 57-133 596-674 (683)
87 COG0317 SpoT Guanosine polypho 67.8 25 0.00055 32.6 7.4 76 57-134 613-692 (701)
88 PRK00227 glnD PII uridylyl-tra 67.6 41 0.00089 31.1 8.8 69 65-135 545-613 (693)
89 PRK15422 septal ring assembly 66.7 12 0.00027 25.3 4.0 29 6-34 11-39 (79)
90 KOG3896 Dynactin, subunit p62 66.4 6.8 0.00015 33.6 3.2 29 6-34 139-167 (449)
91 cd04894 ACT_ACR-like_1 ACT dom 63.4 40 0.00086 22.1 7.3 62 73-134 6-67 (69)
92 PRK14639 hypothetical protein; 62.6 31 0.00067 25.4 5.9 51 86-136 5-55 (140)
93 PF08644 SPT16: FACT complex s 61.0 14 0.00031 27.8 3.9 30 5-34 77-106 (152)
94 PF00170 bZIP_1: bZIP transcri 60.9 16 0.00034 22.9 3.5 23 12-34 25-47 (64)
95 PF13840 ACT_7: ACT domain ; P 57.7 15 0.00032 23.1 3.0 35 76-117 19-53 (65)
96 PF14689 SPOB_a: Sensor_kinase 57.3 19 0.00041 22.7 3.5 22 5-26 36-57 (62)
97 cd04885 ACT_ThrD-I Tandem C-te 57.1 45 0.00097 20.7 5.4 54 76-133 7-61 (68)
98 PRK06737 acetolactate synthase 56.7 53 0.0011 21.8 5.7 59 76-136 11-69 (76)
99 COG3879 Uncharacterized protei 56.4 30 0.00065 28.2 5.2 90 10-99 54-159 (247)
100 PRK14638 hypothetical protein; 56.2 48 0.001 24.7 6.0 51 86-136 16-67 (150)
101 PRK14644 hypothetical protein; 55.8 51 0.0011 24.2 6.0 48 86-136 6-53 (136)
102 cd04919 ACT_AK-Hom3_2 ACT doma 55.5 44 0.00094 20.1 5.8 49 77-133 14-62 (66)
103 KOG3856 Uncharacterized conser 55.2 8.7 0.00019 28.3 1.8 29 5-33 2-30 (135)
104 cd04892 ACT_AK-like_2 ACT doma 55.1 39 0.00085 19.5 5.7 26 77-102 13-38 (65)
105 cd04909 ACT_PDH-BS C-terminal 55.1 46 0.001 20.3 7.2 54 75-133 9-64 (69)
106 PF07485 DUF1529: Domain of Un 54.9 50 0.0011 23.9 5.7 53 79-136 68-121 (123)
107 cd04930 ACT_TH ACT domain of t 54.3 66 0.0014 22.8 6.2 43 75-117 49-92 (115)
108 PF08826 DMPK_coil: DMPK coile 53.6 35 0.00077 21.8 4.2 29 5-33 31-59 (61)
109 cd04868 ACT_AK-like ACT domain 53.4 40 0.00086 19.0 5.3 26 77-102 13-38 (60)
110 PRK14646 hypothetical protein; 52.7 73 0.0016 23.8 6.5 53 84-136 13-67 (155)
111 CHL00100 ilvH acetohydroxyacid 51.9 84 0.0018 24.0 6.9 62 73-136 8-69 (174)
112 PRK10310 PTS system galactitol 51.4 44 0.00096 22.6 4.8 68 68-135 4-92 (94)
113 PRK14640 hypothetical protein; 51.3 74 0.0016 23.6 6.3 51 86-136 14-64 (152)
114 PF06673 L_lactis_ph-MCP: Lact 49.4 19 0.00041 29.1 3.0 26 10-35 15-40 (347)
115 smart00338 BRLZ basic region l 49.2 30 0.00065 21.6 3.4 23 12-34 25-47 (65)
116 cd04937 ACT_AKi-DapG-BS_2 ACT 48.8 41 0.00089 20.6 4.0 23 77-99 14-36 (64)
117 cd04929 ACT_TPH ACT domain of 48.4 74 0.0016 20.6 7.0 45 73-117 6-51 (74)
118 PRK14637 hypothetical protein; 47.9 1.1E+02 0.0023 22.9 6.7 54 81-135 11-65 (151)
119 PRK14647 hypothetical protein; 47.8 1E+02 0.0022 23.1 6.6 51 86-136 16-66 (159)
120 PF02302 PTS_IIB: PTS system, 47.7 35 0.00075 22.1 3.7 33 69-101 2-37 (90)
121 PF08336 P4Ha_N: Prolyl 4-Hydr 47.4 28 0.0006 25.0 3.4 28 8-35 17-44 (134)
122 KOG4029 Transcription factor H 47.3 14 0.0003 29.0 2.0 22 5-26 148-169 (228)
123 PF06305 DUF1049: Protein of u 47.1 22 0.00048 22.1 2.6 19 14-32 49-67 (68)
124 PRK14645 hypothetical protein; 47.1 1E+02 0.0023 23.0 6.6 56 81-136 11-69 (154)
125 KOG2483 Upstream transcription 46.3 30 0.00066 27.8 3.8 22 6-27 98-119 (232)
126 PRK14630 hypothetical protein; 45.0 1E+02 0.0022 22.7 6.2 49 86-135 16-65 (143)
127 PRK14634 hypothetical protein; 44.9 1E+02 0.0023 22.9 6.3 50 87-136 16-67 (155)
128 COG3978 Acetolactate synthase 44.4 92 0.002 21.3 5.3 56 76-134 12-67 (86)
129 PRK09343 prefoldin subunit bet 44.3 51 0.0011 23.5 4.4 33 3-35 4-36 (121)
130 TIGR02338 gimC_beta prefoldin, 43.7 53 0.0012 22.8 4.3 32 4-35 1-32 (110)
131 PF14193 DUF4315: Domain of un 43.5 56 0.0012 22.1 4.2 28 7-34 9-36 (83)
132 PRK06382 threonine dehydratase 43.4 72 0.0016 27.1 5.9 55 76-133 339-398 (406)
133 PRK08198 threonine dehydratase 43.0 1.1E+02 0.0024 25.8 6.9 55 76-133 336-395 (404)
134 PF04977 DivIC: Septum formati 43.0 35 0.00077 21.6 3.1 22 13-34 24-45 (80)
135 COG0779 Uncharacterized protei 41.8 88 0.0019 23.5 5.5 56 81-136 10-66 (153)
136 PF03698 UPF0180: Uncharacteri 41.6 26 0.00057 23.6 2.4 20 80-99 9-28 (80)
137 PRK14632 hypothetical protein; 41.5 98 0.0021 23.5 5.8 50 86-136 16-65 (172)
138 PF15030 DUF4527: Protein of u 41.4 42 0.00091 27.5 3.9 27 6-32 44-70 (277)
139 PF06230 DUF1009: Protein of u 40.4 20 0.00043 28.5 1.9 26 75-100 49-74 (214)
140 TIGR01127 ilvA_1Cterm threonin 39.3 1.8E+02 0.004 24.2 7.6 66 65-133 302-373 (380)
141 PRK08526 threonine dehydratase 39.0 1.7E+02 0.0037 25.0 7.5 65 66-133 324-394 (403)
142 cd09237 V_ScBro1_like Protein- 39.0 55 0.0012 27.4 4.4 27 8-34 196-222 (356)
143 COG0788 PurU Formyltetrahydrof 39.0 2.3E+02 0.005 23.6 7.8 61 71-133 11-73 (287)
144 cd04918 ACT_AK1-AT_2 ACT domai 38.4 95 0.0021 19.0 5.9 28 77-104 13-40 (65)
145 PF13601 HTH_34: Winged helix 38.0 98 0.0021 20.3 4.7 33 77-111 27-61 (80)
146 PF09278 MerR-DNA-bind: MerR, 37.9 76 0.0016 19.3 4.0 24 9-32 39-62 (65)
147 cd09238 V_Alix_like_1 Protein- 37.9 56 0.0012 27.2 4.3 32 3-34 185-216 (339)
148 PHA01750 hypothetical protein 37.6 46 0.001 21.9 2.9 12 17-28 60-71 (75)
149 PF03668 ATP_bind_2: P-loop AT 37.0 52 0.0011 27.3 3.9 30 67-97 1-30 (284)
150 PF02576 DUF150: Uncharacteris 36.8 1.6E+02 0.0035 21.2 6.4 50 86-136 4-54 (141)
151 cd04906 ACT_ThrD-I_1 First of 36.2 1.2E+02 0.0027 19.7 7.0 54 76-133 10-64 (85)
152 TIGR02263 benz_CoA_red_C benzo 36.2 48 0.001 28.0 3.7 42 65-108 232-273 (380)
153 PF07334 IFP_35_N: Interferon- 35.9 87 0.0019 21.0 4.1 27 8-34 2-28 (76)
154 PF10398 DUF2443: Protein of u 35.6 55 0.0012 22.0 3.1 31 2-32 41-76 (79)
155 PRK09731 putative general secr 35.5 2.1E+02 0.0045 22.1 9.6 96 4-104 60-163 (178)
156 cd04920 ACT_AKiii-DAPDC_2 ACT 35.4 63 0.0014 19.9 3.3 25 77-101 13-37 (63)
157 cd04922 ACT_AKi-HSDH-ThrA_2 AC 35.0 99 0.0021 18.3 5.3 24 77-100 14-37 (66)
158 PRK14633 hypothetical protein; 34.8 1.9E+02 0.0041 21.4 6.4 50 85-136 11-61 (150)
159 PRK10227 DNA-binding transcrip 33.1 99 0.0022 22.4 4.5 26 10-35 83-108 (135)
160 PRK14641 hypothetical protein; 33.0 1.8E+02 0.0038 22.3 6.0 46 90-136 21-67 (173)
161 TIGR02977 phageshock_pspA phag 32.5 86 0.0019 24.4 4.3 31 6-36 113-143 (219)
162 cd04871 ACT_PSP_2 ACT domains 32.4 51 0.0011 21.8 2.6 58 73-134 5-72 (84)
163 PRK06835 DNA replication prote 32.1 57 0.0012 27.2 3.4 25 12-36 64-88 (329)
164 PF05082 Rop-like: Rop-like; 32.1 50 0.0011 21.6 2.4 19 14-32 3-21 (66)
165 TIGR03527 selenium_YedF seleni 31.5 1.2E+02 0.0026 23.5 4.9 39 58-101 122-160 (194)
166 PRK14643 hypothetical protein; 31.5 2.3E+02 0.005 21.4 6.5 51 86-136 17-71 (164)
167 PF14282 FlxA: FlxA-like prote 31.3 71 0.0015 22.2 3.3 23 12-34 18-40 (106)
168 PHA03338 US22 family homolog; 30.8 28 0.00061 29.3 1.3 40 94-133 141-183 (344)
169 PRK03094 hypothetical protein; 30.8 53 0.0011 22.2 2.5 53 80-133 9-77 (80)
170 PF12180 EABR: TSG101 and ALIX 30.7 57 0.0012 18.7 2.2 13 13-25 23-35 (35)
171 PTZ00324 glutamate dehydrogena 30.6 5.3E+02 0.011 25.3 11.0 79 54-133 215-299 (1002)
172 PTZ00376 aspartate aminotransf 30.0 3.2E+02 0.0069 22.7 7.6 23 14-36 312-334 (404)
173 PF03791 KNOX2: KNOX2 domain ; 30.0 83 0.0018 19.5 3.1 21 6-26 31-51 (52)
174 PRK00092 ribosome maturation p 30.0 2.2E+02 0.0049 20.9 6.0 51 86-136 15-65 (154)
175 PF09969 DUF2203: Uncharacteri 29.7 1.1E+02 0.0023 22.0 4.1 29 7-35 4-32 (120)
176 cd04913 ACT_AKii-LysC-BS-like_ 29.7 84 0.0018 18.7 3.2 23 76-98 11-33 (75)
177 PHA02114 hypothetical protein 29.7 78 0.0017 22.7 3.3 21 77-97 94-114 (127)
178 PHA02047 phage lambda Rz1-like 29.7 1.1E+02 0.0024 21.5 4.0 25 5-29 40-64 (101)
179 cd08915 V_Alix_like Protein-in 29.7 91 0.002 25.7 4.2 32 3-34 183-214 (342)
180 PRK13562 acetolactate synthase 29.5 1.7E+02 0.0038 19.8 4.9 59 76-136 11-70 (84)
181 PRK11898 prephenate dehydratas 29.5 2.6E+02 0.0057 22.7 6.9 41 77-117 207-248 (283)
182 PF11853 DUF3373: Protein of u 29.3 41 0.00089 30.0 2.2 21 14-34 32-52 (489)
183 PF10393 Matrilin_ccoil: Trime 28.9 1.4E+02 0.003 18.1 4.0 24 9-32 19-42 (47)
184 PRK14631 hypothetical protein; 28.9 2.4E+02 0.0052 21.5 6.1 51 86-136 16-84 (174)
185 PF00804 Syntaxin: Syntaxin; 28.8 1.5E+02 0.0032 19.1 4.5 30 6-35 7-36 (103)
186 PLN00066 PsbP domain-containin 28.8 1.2E+02 0.0026 24.9 4.6 35 79-113 174-215 (262)
187 PRK10698 phage shock protein P 28.3 1.1E+02 0.0024 24.1 4.3 31 6-36 113-143 (222)
188 cd01109 HTH_YyaN Helix-Turn-He 28.3 1.3E+02 0.0028 20.6 4.3 24 9-32 82-105 (113)
189 PF04012 PspA_IM30: PspA/IM30 28.2 1.1E+02 0.0024 23.4 4.3 31 6-36 112-142 (221)
190 KOG3960 Myogenic helix-loop-he 27.9 63 0.0014 26.7 2.8 25 8-32 158-182 (284)
191 PLN02397 aspartate transaminas 27.6 3.5E+02 0.0075 22.8 7.5 90 14-135 330-419 (423)
192 PF06971 Put_DNA-bind_N: Putat 26.9 53 0.0012 20.1 1.8 20 80-99 13-32 (50)
193 COG1695 Predicted transcriptio 26.7 1.4E+02 0.0031 21.0 4.4 33 77-111 43-78 (138)
194 TIGR00853 pts-lac PTS system, 26.5 62 0.0013 22.0 2.3 28 68-95 5-34 (95)
195 cd05565 PTS_IIB_lactose PTS_II 26.3 67 0.0014 22.3 2.4 28 68-95 2-31 (99)
196 PF04568 IATP: Mitochondrial A 26.3 89 0.0019 21.9 3.1 18 13-30 64-82 (100)
197 TIGR01608 citD citrate lyase a 26.3 1E+02 0.0022 21.4 3.3 40 55-94 16-59 (92)
198 COG0347 GlnK Nitrogen regulato 26.2 59 0.0013 23.4 2.2 17 77-93 9-25 (112)
199 smart00596 PRE_C2HC PRE_C2HC d 26.2 81 0.0017 20.8 2.7 24 82-105 2-25 (69)
200 PF13094 CENP-Q: CENP-Q, a CEN 26.0 95 0.0021 22.8 3.4 28 8-35 57-84 (160)
201 COG4424 Uncharacterized protei 26.0 43 0.00092 27.0 1.6 20 2-21 123-142 (250)
202 cd04785 HTH_CadR-PbrR-like Hel 25.7 1.6E+02 0.0036 20.7 4.5 28 8-35 81-108 (126)
203 TIGR02051 MerR Hg(II)-responsi 25.0 1.7E+02 0.0037 20.5 4.5 29 7-35 77-105 (124)
204 TIGR02043 ZntR Zn(II)-responsi 24.8 1.6E+02 0.0035 20.9 4.3 28 9-36 84-111 (131)
205 COG3416 Uncharacterized protei 24.8 82 0.0018 25.3 2.9 21 8-28 57-77 (233)
206 PF02120 Flg_hook: Flagellar h 24.6 1.9E+02 0.0042 18.3 5.6 46 57-102 28-78 (85)
207 PF10612 Spore-coat_CotZ: Spor 24.6 70 0.0015 24.3 2.4 17 8-24 15-31 (156)
208 COG1849 Uncharacterized protei 24.6 88 0.0019 21.7 2.7 22 7-28 6-27 (90)
209 PF04508 Pox_A_type_inc: Viral 24.4 1E+02 0.0022 16.1 2.3 14 15-28 3-16 (23)
210 PF01545 Cation_efflux: Cation 24.2 3.5E+02 0.0075 21.1 7.0 58 78-135 204-264 (284)
211 COG2185 Sbm Methylmalonyl-CoA 24.1 61 0.0013 24.2 2.0 34 64-97 61-96 (143)
212 COG4747 ACT domain-containing 24.1 1.7E+02 0.0036 21.7 4.2 36 70-105 4-41 (142)
213 KOG1318 Helix loop helix trans 24.0 1.1E+02 0.0023 26.9 3.7 20 8-27 275-294 (411)
214 PF13606 Ank_3: Ankyrin repeat 24.0 51 0.0011 17.4 1.2 14 82-95 15-28 (30)
215 PF12646 DUF3783: Domain of un 23.7 82 0.0018 19.5 2.3 27 68-95 2-28 (58)
216 cd05564 PTS_IIB_chitobiose_lic 23.7 78 0.0017 21.4 2.4 35 69-103 2-40 (96)
217 cd04770 HTH_HMRTR Helix-Turn-H 23.7 1.8E+02 0.0039 20.1 4.3 26 9-34 82-107 (123)
218 PRK14635 hypothetical protein; 23.6 3.2E+02 0.0069 20.4 6.6 56 81-136 8-67 (162)
219 PF10815 ComZ: ComZ; InterPro 23.5 80 0.0017 19.9 2.1 17 8-24 7-23 (56)
220 TIGR02044 CueR Cu(I)-responsiv 23.4 1.8E+02 0.0039 20.5 4.3 27 9-35 82-108 (127)
221 PF13399 LytR_C: LytR cell env 23.3 2.2E+02 0.0047 18.4 4.5 35 66-100 3-37 (90)
222 PF12633 Adenyl_cycl_N: Adenyl 23.3 84 0.0018 24.8 2.8 22 13-34 3-25 (204)
223 TIGR02047 CadR-PbrR Cd(II)/Pb( 23.3 1.8E+02 0.0039 20.6 4.3 25 11-35 84-108 (127)
224 cd04891 ACT_AK-LysC-DapG-like_ 22.9 1.6E+02 0.0034 16.6 5.5 25 76-100 10-34 (61)
225 PRK14011 prefoldin subunit alp 22.9 1.6E+02 0.0035 21.8 4.1 10 7-16 85-94 (144)
226 PF02996 Prefoldin: Prefoldin 22.8 1.7E+02 0.0037 19.9 4.1 27 8-34 75-105 (120)
227 TIGR01270 Trp_5_monoox tryptop 22.8 2.9E+02 0.0062 24.6 6.2 44 73-116 37-82 (464)
228 cd04784 HTH_CadR-PbrR Helix-Tu 22.7 1.9E+02 0.0041 20.3 4.3 25 11-35 84-108 (127)
229 PF08965 DUF1870: Domain of un 22.5 1.2E+02 0.0025 22.1 3.1 19 17-35 46-64 (118)
230 PF06698 DUF1192: Protein of u 22.4 2.1E+02 0.0045 18.2 4.0 25 7-31 22-46 (59)
231 PF03979 Sigma70_r1_1: Sigma-7 22.4 49 0.0011 21.8 1.1 19 79-97 39-57 (82)
232 PF04420 CHD5: CHD5-like prote 22.4 1.3E+02 0.0029 22.4 3.6 23 10-33 64-86 (161)
233 PF13713 BRX_N: Transcription 22.3 1.4E+02 0.0031 17.4 2.9 19 10-28 9-27 (39)
234 COG1608 Predicted archaeal kin 22.3 88 0.0019 25.6 2.7 31 80-110 82-115 (252)
235 cd04890 ACT_AK-like_1 ACT doma 22.2 1.8E+02 0.004 17.1 4.5 35 77-113 13-47 (62)
236 PRK14069 exodeoxyribonuclease 22.2 2.8E+02 0.0061 19.3 5.7 28 7-34 37-64 (95)
237 PF09849 DUF2076: Uncharacteri 22.2 76 0.0016 25.7 2.3 15 15-29 57-71 (247)
238 COG1591 Holliday junction reso 22.1 2.9E+02 0.0062 20.6 5.2 50 83-133 12-73 (137)
239 TIGR01280 xseB exodeoxyribonuc 22.0 2.3E+02 0.0049 18.2 4.3 29 6-34 29-57 (67)
240 PRK14636 hypothetical protein; 22.0 3.5E+02 0.0077 20.6 5.9 51 86-136 13-65 (176)
241 cd01106 HTH_TipAL-Mta Helix-Tu 21.8 2E+02 0.0044 19.3 4.2 25 8-32 75-99 (103)
242 PRK00977 exodeoxyribonuclease 21.0 2E+02 0.0044 19.1 3.9 29 7-35 39-67 (80)
243 KOG3088 Secretory carrier memb 20.9 77 0.0017 26.6 2.2 28 9-36 60-87 (313)
244 PF13600 DUF4140: N-terminal d 20.8 1.2E+02 0.0027 20.3 3.0 18 15-32 72-89 (104)
245 PF07293 DUF1450: Protein of u 20.8 2.3E+02 0.005 18.9 4.2 55 81-135 16-72 (78)
246 COG2605 Predicted kinase relat 20.8 2.6E+02 0.0057 23.7 5.3 41 65-109 291-331 (333)
247 TIGR00103 DNA_YbaB_EbfC DNA-bi 20.6 3E+02 0.0064 19.0 5.3 23 6-28 5-27 (102)
248 cd04776 HTH_GnyR Helix-Turn-He 20.6 2.2E+02 0.0047 20.0 4.2 25 10-34 84-108 (118)
249 PF10737 GerPC: Spore germinat 20.6 1.4E+02 0.0031 23.0 3.5 22 15-36 1-22 (176)
250 PF11336 DUF3138: Protein of u 20.3 1.5E+02 0.0032 26.5 3.9 26 3-28 22-47 (514)
251 PRK09514 zntR zinc-responsive 20.1 2.2E+02 0.0048 20.5 4.3 27 9-35 84-110 (140)
252 PF05565 Sipho_Gp157: Siphovir 20.1 1.9E+02 0.0042 21.4 4.1 29 5-33 39-67 (162)
253 cd04915 ACT_AK-Ectoine_2 ACT d 20.1 2.3E+02 0.005 17.5 5.8 29 74-102 11-39 (66)
No 1
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.76 E-value=0.00038 Score=46.27 Aligned_cols=65 Identities=11% Similarity=0.182 Sum_probs=51.2
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 69 VVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 69 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
|+-+++.++++.|++|.++|.+.|++|.+|..++.|+++.-+++-.-.++. .++-+...++|++.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~-kl~d~~~~~~l~~~ 67 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGN-KLTDDSLIAYIEKS 67 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCC-CCCCHHHHHHHHHH
Confidence 334577789999999999999999999999999999999999998765433 45444555555543
No 2
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.57 E-value=0.0011 Score=44.44 Aligned_cols=66 Identities=23% Similarity=0.275 Sum_probs=52.2
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccch----HHHHHHHhhhh
Q 032643 69 VVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVET----SIACQRLHDLV 135 (136)
Q Consensus 69 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~----~~l~erL~~~i 135 (136)
|+-+.+.++|+.|++|..+|-+.|++|.+|..++.|+++.=+++-.-.++. .+.. .++.++|.+.+
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~-kl~~~~~~~~l~~~L~~al 72 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGR-TLSTEGERQRVIKCLEAAI 72 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCC-ccCCHHHHHHHHHHHHHHH
Confidence 344577889999999999999999999999999999999999998776553 4433 45555555543
No 3
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.52 E-value=0.0019 Score=41.93 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=46.3
Q ss_pred EEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEe-CCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 68 EVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTI-GDKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 68 eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
+|.+ .+.+++++|+++-.+|...|++|++|...+. +++++=+++-.-.+.. .++.+.-.++|++
T Consensus 3 ~i~v-~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~-~~~~~~~~~~l~~ 67 (73)
T cd04900 3 EVFI-YTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGE-PIGERERLARIRE 67 (73)
T ss_pred EEEE-EecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCC-CCChHHHHHHHHH
Confidence 4544 4558999999999999999999999998665 7899999887643322 3444444444443
No 4
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.44 E-value=0.0024 Score=40.41 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=47.7
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccch---HHHHHHHhhh
Q 032643 72 ISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVET---SIACQRLHDL 134 (136)
Q Consensus 72 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~---~~l~erL~~~ 134 (136)
+.+.++++.|.++..+|.+.|++++++.....+++.+-+++.+-..+. ..+. .+++++|.+.
T Consensus 5 v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~-~~~~~~~~~i~~~l~~~ 69 (70)
T cd04899 5 LTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQ-PLDPERQEALRAALGEA 69 (70)
T ss_pred EEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCC-cCCHHHHHHHHHHHHhh
Confidence 355678999999999999999999999998888899999998875543 2332 2355565544
No 5
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.44 E-value=0.0026 Score=41.66 Aligned_cols=62 Identities=19% Similarity=0.275 Sum_probs=47.2
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeec-cCcccc----hHHHHHHHhhh
Q 032643 72 ISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKI-SRLGVE----TSIACQRLHDL 134 (136)
Q Consensus 72 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~-~~~~~d----~~~l~erL~~~ 134 (136)
+.+.+++++|++|-.+|.+.|++|++|..++.|++++-+++..-.+ .. .++ ..++.+.|.+.
T Consensus 5 v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~-~~~~~~~~~~i~~~L~~~ 71 (74)
T cd04925 5 LTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGA-PIDDPIRLASIEDRLDNV 71 (74)
T ss_pred EEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCC-CCCCHHHHHHHHHHHHHH
Confidence 4566899999999999999999999999988899999999876432 21 232 34555555544
No 6
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.29 E-value=0.0042 Score=41.03 Aligned_cols=45 Identities=16% Similarity=0.132 Sum_probs=39.9
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEE-eCCeEEEEEEEEee
Q 032643 72 ISGVQRNFMLYEVISILEEEGAQVVSASFST-IGDKIFHTVRAQAK 116 (136)
Q Consensus 72 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~-~~~r~fhtI~~qv~ 116 (136)
+.+.++++.|+++..+|.+.|++|.+|..++ .|++++-+++-+-.
T Consensus 5 i~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~ 50 (76)
T cd04927 5 LFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA 50 (76)
T ss_pred EEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC
Confidence 4556899999999999999999999999874 99999999998643
No 7
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.17 E-value=0.0071 Score=39.29 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=47.4
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 67 IEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 67 ~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
.+|.+. ..+++++|+++..+|.+.|++|++|.....+++.+-+++.+-.+.. .++. ...+++++.
T Consensus 2 tri~V~-~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~-~~~~-~~~~~l~~~ 66 (72)
T cd04926 2 VRLELR-TEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGN-PVDP-KTIEAVRQE 66 (72)
T ss_pred eEEEEE-ECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCC-cCCH-HHHHHHHHH
Confidence 355553 3478999999999999999999999988778888888887643332 2443 455566554
No 8
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.14 E-value=0.0059 Score=40.86 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=49.8
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEE--EeCCeEEEEEEEEeeccCccc-c---hHHHHHHHhhhh
Q 032643 71 LISGVQRNFMLYEVISILEEEGAQVVSASFS--TIGDKIFHTVRAQAKISRLGV-E---TSIACQRLHDLV 135 (136)
Q Consensus 71 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s--~~~~r~fhtI~~qv~~~~~~~-d---~~~l~erL~~~i 135 (136)
-+.+.++++.|++|.++|.+.|++|.+|..+ +.|+|+.=+++-.-.+ . .+ | ...|.++|.+.+
T Consensus 4 ev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g-~-kl~d~~~~~~L~~~L~~~l 72 (75)
T cd04896 4 QIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDG-K-KIMDPKKQAALCARLREEM 72 (75)
T ss_pred EEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCC-C-ccCCHHHHHHHHHHHHHHh
Confidence 3567789999999999999999999999999 9999999998884332 2 23 3 456677776654
No 9
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.08 E-value=0.0075 Score=39.74 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=52.9
Q ss_pred EEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 70 VLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 70 ~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
+.++|.++++..++|-++|.+.|+++++++....+++.|..+...+.. .+.+.|.++|.++
T Consensus 4 ltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~----~~~~~l~~~l~~~ 64 (77)
T cd04893 4 ISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW----DAIAKLEAALPGL 64 (77)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc----ccHHHHHHHHHHH
Confidence 346788899999999999999999999999999999999999999752 4678888888765
No 10
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.015 Score=38.14 Aligned_cols=65 Identities=18% Similarity=0.169 Sum_probs=53.8
Q ss_pred EEEEEecCCCcccHHHHHHHHHHcCceEEEeEE-EEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 68 EVVLISGVQRNFMLYEVISILEEEGAQVVSASF-STIGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 68 eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~-s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
+|.+.+ .+++.+|+++-.+|...|++|++|.. +..++.++-+++.+-. -+=|...+.++|.+.++
T Consensus 3 eI~V~~-~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~---~~~~~~~~~~~~~~~~~ 68 (68)
T cd04928 3 EITFAA-GDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW---KRGETAALGHALQKEID 68 (68)
T ss_pred EEEEEE-CCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC---CccchHHHHHHHHHhhC
Confidence 565544 48899999999999999999999996 5678899998887743 36788999999988764
No 11
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.89 E-value=0.01 Score=38.99 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=49.0
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 72 ISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 72 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
+.|.++++.++++..+|.+.|+++++++.++.++++-..++.++.. -+.++|...|.++
T Consensus 7 v~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~----~~~~~l~~~L~~l 65 (76)
T PF13740_consen 7 VVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPE----DSLERLESALEEL 65 (76)
T ss_dssp EEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESH----HHHHHHHHHHHHH
T ss_pred EEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCc----ccHHHHHHHHHHH
Confidence 5677899999999999999999999999999999999888888862 3668888888765
No 12
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.82 E-value=0.013 Score=38.20 Aligned_cols=61 Identities=11% Similarity=0.198 Sum_probs=51.1
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 71 LISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 71 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
-+.|.++++...++-++|.+.|+++.+.+.++.++. +++...+..+. +.+.++|.+.|..+
T Consensus 3 tv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~--f~~~~~v~~p~-~~~~~~l~~~l~~l 63 (75)
T cd04870 3 TVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGR--LSLGILVQIPD-SADSEALLKDLLFK 63 (75)
T ss_pred EEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCe--eEEEEEEEcCC-CCCHHHHHHHHHHH
Confidence 356888999999999999999999999998888865 56667777665 57789999988875
No 13
>PRK00194 hypothetical protein; Validated
Probab=96.51 E-value=0.016 Score=38.79 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=50.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 69 VVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 69 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
++.+.+.++++.+++|.++|-+.|+++++.+....++..+-.+-+.... ...+.+.|.+.|.++
T Consensus 5 ~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~l~~l 68 (90)
T PRK00194 5 IITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE--SKKDFAELKEELEEL 68 (90)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC--CCCCHHHHHHHHHHH
Confidence 4456778899999999999999999999999887777666666666643 246678888888765
No 14
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.39 E-value=0.019 Score=38.42 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=51.1
Q ss_pred EEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 70 VLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 70 ~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
+.+.|.++++.+++|-+.|-+.|+++++.+..+.+++.+-.+.+.... .+.+.++|.+.|.++
T Consensus 4 l~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~--~~~~~~~L~~~l~~l 66 (88)
T cd04872 4 ITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE--SNLDFAELQEELEEL 66 (88)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC--CCCCHHHHHHHHHHH
Confidence 445777899999999999999999999999888788777777666542 256778999888765
No 15
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.37 E-value=0.046 Score=35.47 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=48.0
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEEEeC----CeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 71 LISGVQRNFMLYEVISILEEEGAQVVSASFSTIG----DKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 71 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~----~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
-+.+.++++.+++|-+.|.+.|+++.+.+....+ +--.+.+.+++..+. ..+..++.+.|..+
T Consensus 3 ~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~-~~~~~~l~~~l~~l 69 (81)
T cd04869 3 EVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA-GTDLDALREELEEL 69 (81)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC-CCCHHHHHHHHHHH
Confidence 3567789999999999999999999999998776 223334444454443 67889999888765
No 16
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.30 E-value=0.084 Score=32.74 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=37.0
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeec
Q 032643 72 ISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKI 117 (136)
Q Consensus 72 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~ 117 (136)
+.+.++++.|+++..+|.+.|+.+.++.....+++..-.++..-..
T Consensus 5 i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 5 VYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred EEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 3555789999999999999999999999877777666666665543
No 17
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.20 E-value=0.059 Score=34.72 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=46.9
Q ss_pred EEEecCCCcccHHHHHHHHHHcCceEEEeEEEE-eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 70 VLISGVQRNFMLYEVISILEEEGAQVVSASFST-IGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 70 ~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~-~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
+.+.|.++++.+++|-++|-+.|+++++.+..+ .++..|+. .+++..+....+...+.+.|.++
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~l~~~l~~l 66 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFM-RVEFELEGFDLSREALEAAFAPV 66 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEE-EEEEEeCCCCCCHHHHHHHHHHH
Confidence 345677899999999999999999999999875 34444443 55555443125678888888765
No 18
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.18 E-value=0.049 Score=35.50 Aligned_cols=66 Identities=21% Similarity=0.225 Sum_probs=50.7
Q ss_pred eeEEEE-EecCCCcccHHHHHHHHHHcCceEEEeEEEE--eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 66 SIEVVL-ISGVQRNFMLYEVISILEEEGAQVVSASFST--IGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 66 ~~eV~l-~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~--~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
.+.+.+ +...+.++.|.+|..++.++|+.+.+.+... .++...-+|..+|.+. -++..+-++|+++
T Consensus 4 ~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~---~~L~~ii~~L~~i 72 (80)
T PF13291_consen 4 SFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDL---EHLNQIIRKLRQI 72 (80)
T ss_dssp -EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSH---HHHHHHHHHHCTS
T ss_pred EEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCH---HHHHHHHHHHHCC
Confidence 344444 4556789999999999999999999999976 4788889999999764 4667888888764
No 19
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.15 E-value=0.054 Score=50.51 Aligned_cols=82 Identities=21% Similarity=0.209 Sum_probs=58.4
Q ss_pred CCCeEEEEEcC-CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHh
Q 032643 54 NLPVVELRDLG-SSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLH 132 (136)
Q Consensus 54 ~~p~V~V~~~~-~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~ 132 (136)
..|.|.+.... .+.-++.+.+.++++.|++|-.+|.+.|++|.+|..++.|++++=+++-+-.+....-...++.++|.
T Consensus 772 ~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~ 851 (856)
T PRK03059 772 ITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELL 851 (856)
T ss_pred CCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 34567776543 35555556677899999999999999999999999998899999999874221111112356666666
Q ss_pred hhh
Q 032643 133 DLV 135 (136)
Q Consensus 133 ~~i 135 (136)
+.+
T Consensus 852 ~~L 854 (856)
T PRK03059 852 DAL 854 (856)
T ss_pred HHh
Confidence 554
No 20
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.12 E-value=0.071 Score=32.68 Aligned_cols=59 Identities=20% Similarity=0.083 Sum_probs=43.8
Q ss_pred cCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhh
Q 032643 74 GVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLV 135 (136)
Q Consensus 74 ~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i 135 (136)
..++++.|+++.++|.++|++|.++.....++...+.+-+...+ .-+...+.++|+++.
T Consensus 7 ~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 7 VPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---EEDLEKLLEELEALP 65 (66)
T ss_dssp EETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---GHGHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---CCCHHHHHHHHHccc
Confidence 34789999999999999999999999988776322222222322 356788899988764
No 21
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.00 E-value=0.088 Score=49.38 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=62.0
Q ss_pred CCCeEEEEEcC-CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccch----HHHH
Q 032643 54 NLPVVELRDLG-SSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVET----SIAC 128 (136)
Q Consensus 54 ~~p~V~V~~~~-~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~----~~l~ 128 (136)
..|.|.+.... .+.-++.+++.++++.|++|-.+|.+.|++|++|..++.|++++=+++-.-.++. .++. .++.
T Consensus 800 ~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~-~l~~~~~~~~l~ 878 (895)
T PRK00275 800 FPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQ-PLSDPQLCSRLQ 878 (895)
T ss_pred CCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCC-CCCCHHHHHHHH
Confidence 45788887654 3555566778899999999999999999999999998889999999998765433 2322 4466
Q ss_pred HHHhhhh
Q 032643 129 QRLHDLV 135 (136)
Q Consensus 129 erL~~~i 135 (136)
++|.+.+
T Consensus 879 ~~L~~~L 885 (895)
T PRK00275 879 DAICEQL 885 (895)
T ss_pred HHHHHHH
Confidence 6666544
No 22
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.88 E-value=0.12 Score=47.83 Aligned_cols=80 Identities=16% Similarity=0.127 Sum_probs=61.5
Q ss_pred CCCeEEEEEc-CCeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHh
Q 032643 54 NLPVVELRDL-GSSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLH 132 (136)
Q Consensus 54 ~~p~V~V~~~-~~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~ 132 (136)
..|.|.++.. .++.+|.+ .+.++++.|++|..+|...|++|++|...+.++.++=++...-.... ..+.+++.+.|.
T Consensus 586 ~~~~v~~~~~~~~~~~V~V-~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~-~~~~~~l~~~L~ 663 (774)
T PRK03381 586 GGVHVEIAPADPHMVEVTV-VAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGS-PPDAALLRQDLR 663 (774)
T ss_pred CCCEEEEeeCCCCeEEEEE-EecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCC-cchHHHHHHHHH
Confidence 3567777543 46777655 56689999999999999999999999988788898888888754332 355678888887
Q ss_pred hhh
Q 032643 133 DLV 135 (136)
Q Consensus 133 ~~i 135 (136)
+++
T Consensus 664 ~~L 666 (774)
T PRK03381 664 RAL 666 (774)
T ss_pred HHH
Confidence 654
No 23
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.80 E-value=0.12 Score=48.48 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=61.4
Q ss_pred CCCeEEEEEcC-CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccc---hHHHHH
Q 032643 54 NLPVVELRDLG-SSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVE---TSIACQ 129 (136)
Q Consensus 54 ~~p~V~V~~~~-~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d---~~~l~e 129 (136)
..|.|.+.... .+.-++-+...++++.|++|-.+|.+.|++|.+|..++.|+++.-+++-+-.++. .++ ...|.+
T Consensus 782 ~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~-~~~~~~~~~l~~ 860 (869)
T PRK04374 782 FAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDR-PLSESARQALRD 860 (869)
T ss_pred CCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCC-cCChHHHHHHHH
Confidence 45678887644 4666666778889999999999999999999999999999999999998754433 232 245555
Q ss_pred HHhhhh
Q 032643 130 RLHDLV 135 (136)
Q Consensus 130 rL~~~i 135 (136)
+|.+.+
T Consensus 861 ~L~~~l 866 (869)
T PRK04374 861 ALCACL 866 (869)
T ss_pred HHHHHh
Confidence 555443
No 24
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.76 E-value=0.12 Score=48.49 Aligned_cols=82 Identities=17% Similarity=0.265 Sum_probs=63.1
Q ss_pred CCCCeEEEEEcCC-eeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCccc-c---hHHH
Q 032643 53 SNLPVVELRDLGS-SIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGV-E---TSIA 127 (136)
Q Consensus 53 ~~~p~V~V~~~~~-~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~-d---~~~l 127 (136)
...|.|.+....+ +.-++.+.+.++++.|++|..+|.+.|++|.+|..++.|+++.=+++..-.++. .+ + ..+|
T Consensus 828 ~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~-~i~~~~~~~~l 906 (931)
T PRK05092 828 HVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGL-KITNEARQAAI 906 (931)
T ss_pred CCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCC-cCCCHHHHHHH
Confidence 3457888876543 444555778889999999999999999999999999999999999998764433 22 2 3457
Q ss_pred HHHHhhhh
Q 032643 128 CQRLHDLV 135 (136)
Q Consensus 128 ~erL~~~i 135 (136)
+++|.+++
T Consensus 907 ~~~L~~~L 914 (931)
T PRK05092 907 RRALLAAL 914 (931)
T ss_pred HHHHHHHh
Confidence 77777665
No 25
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.58 E-value=0.099 Score=48.96 Aligned_cols=80 Identities=16% Similarity=0.143 Sum_probs=59.4
Q ss_pred CCCeEEEEEcC-CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccc---hHHHHH
Q 032643 54 NLPVVELRDLG-SSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVE---TSIACQ 129 (136)
Q Consensus 54 ~~p~V~V~~~~-~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d---~~~l~e 129 (136)
..|.|.+..-. +..-++-+.+.+.++.|++|.++|.+.|++|.+|..++.|+|+.=+++-+=..+. -++ ...|.+
T Consensus 794 ~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~-~l~~~~~~~l~~ 872 (884)
T PRK05007 794 VPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRR-ALNEELQQELRQ 872 (884)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCC-cCCHHHHHHHHH
Confidence 34677776543 4455555788899999999999999999999999999999999999888654332 355 234455
Q ss_pred HHhhh
Q 032643 130 RLHDL 134 (136)
Q Consensus 130 rL~~~ 134 (136)
+|.+.
T Consensus 873 ~L~~~ 877 (884)
T PRK05007 873 RLTEA 877 (884)
T ss_pred HHHHH
Confidence 55443
No 26
>smart00353 HLH helix loop helix domain.
Probab=94.88 E-value=0.025 Score=34.18 Aligned_cols=22 Identities=45% Similarity=0.650 Sum_probs=19.0
Q ss_pred CChhhhHHHHHHHHHHHHHHHH
Q 032643 2 LSQEDQLDLACCYIKQLRERID 23 (136)
Q Consensus 2 ~s~~d~l~eA~~YIk~Lq~kve 23 (136)
++-.+.|.+|++||++|+++++
T Consensus 31 ~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 31 LSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 3567889999999999999886
No 27
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.88 E-value=0.31 Score=45.07 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=58.3
Q ss_pred CCCeEEEEEcCC-eeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHh
Q 032643 54 NLPVVELRDLGS-SIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLH 132 (136)
Q Consensus 54 ~~p~V~V~~~~~-~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~ 132 (136)
..|.|.+....+ +.-++-+.+.++++.|++|-.+|.+.|++|.+|..++.|++++=+++-+-.+.. .+.-. .+.|+
T Consensus 693 ~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~-~~~~~--~~~l~ 769 (774)
T PRK03381 693 APPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGG-PLADA--RAAVE 769 (774)
T ss_pred CCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCC-cCchH--HHHHH
Confidence 345677765443 455666778889999999999999999999999999999999999988754433 33222 55555
Q ss_pred hh
Q 032643 133 DL 134 (136)
Q Consensus 133 ~~ 134 (136)
+.
T Consensus 770 ~~ 771 (774)
T PRK03381 770 QA 771 (774)
T ss_pred HH
Confidence 43
No 28
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.57 E-value=0.5 Score=43.94 Aligned_cols=81 Identities=17% Similarity=0.072 Sum_probs=57.2
Q ss_pred CCCeEEEEE-cCCeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEE-EeCCeEEEEEEEEeeccCcccchH----HH
Q 032643 54 NLPVVELRD-LGSSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFS-TIGDKIFHTVRAQAKISRLGVETS----IA 127 (136)
Q Consensus 54 ~~p~V~V~~-~~~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s-~~~~r~fhtI~~qv~~~~~~~d~~----~l 127 (136)
..|.|.+.. ...+.-.+.|.+.++++.|++|..+|...|++|++|..+ +.|++++=+++.+-.++. .++.+ ++
T Consensus 654 ~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~-~~~~~~~~~~i 732 (850)
T TIGR01693 654 GGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGS-PPAAERVFQEL 732 (850)
T ss_pred CCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCC-CCCcHHHHHHH
Confidence 356776643 333333345556688999999999999999999999976 789999999888876543 34433 35
Q ss_pred HHHHhhhh
Q 032643 128 CQRLHDLV 135 (136)
Q Consensus 128 ~erL~~~i 135 (136)
.+.|.+.+
T Consensus 733 ~~~L~~~L 740 (850)
T TIGR01693 733 LQGLVDVL 740 (850)
T ss_pred HHHHHHHH
Confidence 55555543
No 29
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.56 E-value=0.49 Score=29.91 Aligned_cols=59 Identities=15% Similarity=0.136 Sum_probs=44.1
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEEe-CCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 73 SGVQRNFMLYEVISILEEEGAQVVSASFSTI-GDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 73 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
...++++.|.+|..++.++|+++.+.+.... ++.....+..++.+. -.+.++-.+|+++
T Consensus 5 ~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~---~~l~~i~~~L~~i 64 (74)
T cd04887 5 ELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSE---EHAETIVAAVRAL 64 (74)
T ss_pred EeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCH---HHHHHHHHHHhcC
Confidence 3456889999999999999999999888654 455555666666543 4557788887764
No 30
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.19 E-value=0.38 Score=44.99 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=59.6
Q ss_pred CCCeEEEEEcC-CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccc---hHHHHH
Q 032643 54 NLPVVELRDLG-SSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVE---TSIACQ 129 (136)
Q Consensus 54 ~~p~V~V~~~~-~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d---~~~l~e 129 (136)
..|.|.+..-. ...-|+-+...+.++.|++|.++|.+.|++|.+|..++.|+|+.=+++-.-..+. -++ ...|.+
T Consensus 769 ~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~-~l~~~~~~~l~~ 847 (854)
T PRK01759 769 VKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQ-ALDEEERKALKS 847 (854)
T ss_pred CCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCC-cCChHHHHHHHH
Confidence 34677775433 4556666788899999999999999999999999999999999988888654332 343 245555
Q ss_pred HHhhh
Q 032643 130 RLHDL 134 (136)
Q Consensus 130 rL~~~ 134 (136)
+|.+.
T Consensus 848 ~L~~~ 852 (854)
T PRK01759 848 RLLSN 852 (854)
T ss_pred HHHHH
Confidence 55443
No 31
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.25 Score=46.07 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=60.9
Q ss_pred CCCCeEEEEEcCCe-eEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHH
Q 032643 53 SNLPVVELRDLGSS-IEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRL 131 (136)
Q Consensus 53 ~~~p~V~V~~~~~~-~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL 131 (136)
...|.|++.+..+. .-++-+.+++.++.|+++-.+|.+.|+++.+|..+++|.|+--++..+.-... .+ ...+++.|
T Consensus 776 ~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~-~l-~~~~~q~l 853 (867)
T COG2844 776 PIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQ-AL-NAELRQSL 853 (867)
T ss_pred ccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccc-cC-CHHHHHHH
Confidence 34688999876543 55555688899999999999999999999999999999998888877775543 44 34455554
Q ss_pred hh
Q 032643 132 HD 133 (136)
Q Consensus 132 ~~ 133 (136)
.+
T Consensus 854 ~~ 855 (867)
T COG2844 854 LQ 855 (867)
T ss_pred HH
Confidence 43
No 32
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.10 E-value=0.76 Score=43.15 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=56.0
Q ss_pred CCCeEEEEEcC--CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEE-EeCCeEEEEEEEEeeccCcccch---HHH
Q 032643 54 NLPVVELRDLG--SSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFS-TIGDKIFHTVRAQAKISRLGVET---SIA 127 (136)
Q Consensus 54 ~~p~V~V~~~~--~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s-~~~~r~fhtI~~qv~~~~~~~d~---~~l 127 (136)
..|.|.+.... ++.+|. |++.++++.|++|..+|...|++|++|... ..+|+++=+++..-.++. .++. .++
T Consensus 687 ~~p~V~i~~~~~~~~t~V~-V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~-~~~~~~~~~I 764 (884)
T PRK05007 687 DKPLVLLSKQATRGGTEIF-IWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGS-PLSQDRHQVI 764 (884)
T ss_pred CCCeEEEEecCCCCeEEEE-EEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCC-CCCHHHHHHH
Confidence 45777787643 455554 456688999999999999999999999965 556699777776654433 2333 335
Q ss_pred HHHHhhhh
Q 032643 128 CQRLHDLV 135 (136)
Q Consensus 128 ~erL~~~i 135 (136)
.+.|.+.+
T Consensus 765 ~~~L~~aL 772 (884)
T PRK05007 765 RKALEQAL 772 (884)
T ss_pred HHHHHHHH
Confidence 66665543
No 33
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.09 E-value=0.48 Score=44.08 Aligned_cols=80 Identities=20% Similarity=0.182 Sum_probs=61.0
Q ss_pred CCCeEEEEEcCC-eeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccc---hHHHHH
Q 032643 54 NLPVVELRDLGS-SIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVE---TSIACQ 129 (136)
Q Consensus 54 ~~p~V~V~~~~~-~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d---~~~l~e 129 (136)
..|.|.+....+ ..-++-+.+.++|+.|++|.++|.+.|++|.+|..++.+++..-+++.+-.... -++ ...|.+
T Consensus 765 ~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~-~~~~~~~~~l~~ 843 (850)
T TIGR01693 765 VPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGL-KLTDEEEQRLLE 843 (850)
T ss_pred CCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCC-CCCHHHHHHHHH
Confidence 456788876554 456666788899999999999999999999999999999999999988765432 232 345555
Q ss_pred HHhhh
Q 032643 130 RLHDL 134 (136)
Q Consensus 130 rL~~~ 134 (136)
+|.+.
T Consensus 844 ~L~~~ 848 (850)
T TIGR01693 844 VLAAS 848 (850)
T ss_pred HHHHH
Confidence 55544
No 34
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.09 E-value=0.75 Score=43.03 Aligned_cols=80 Identities=11% Similarity=0.115 Sum_probs=57.1
Q ss_pred CCCeEEEEEcC--CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEE-EEeCCeEEEEEEEEeeccCcccchH---HH
Q 032643 54 NLPVVELRDLG--SSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASF-STIGDKIFHTVRAQAKISRLGVETS---IA 127 (136)
Q Consensus 54 ~~p~V~V~~~~--~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~-s~~~~r~fhtI~~qv~~~~~~~d~~---~l 127 (136)
..|.|.++... ++.+| .|.+.++++.|++|..+|...|++|++|.. +..+++++=+++..-.++. .++.+ ++
T Consensus 663 ~~~~V~i~~~~~~~~t~V-~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~-~~~~~~~~~l 740 (854)
T PRK01759 663 GDLLVKISNRFSRGGTEI-FIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGK-LLEFDRRRQL 740 (854)
T ss_pred CCCEEEEEecCCCCeEEE-EEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCC-CCCHHHHHHH
Confidence 35777776543 44555 445668899999999999999999999996 4599999999988755433 34432 34
Q ss_pred HHHHhhhh
Q 032643 128 CQRLHDLV 135 (136)
Q Consensus 128 ~erL~~~i 135 (136)
.+.|.+.+
T Consensus 741 ~~~L~~aL 748 (854)
T PRK01759 741 EQALTKAL 748 (854)
T ss_pred HHHHHHHH
Confidence 55555443
No 35
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.55 E-value=0.63 Score=29.41 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=41.4
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEEe-CCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 73 SGVQRNFMLYEVISILEEEGAQVVSASFSTI-GDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 73 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
...++++.|.+|+.+|.++|+++...+.+.. ++ ..++++.+.-....-...++-++|+++
T Consensus 6 ~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~--~~~i~~~v~v~~~~~~l~~l~~~L~~i 66 (76)
T cd04888 6 LLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHG--RANVTISIDTSTMNGDIDELLEELREI 66 (76)
T ss_pred EecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCC--eEEEEEEEEcCchHHHHHHHHHHHhcC
Confidence 3446789999999999999999999887543 34 344444443333223568888888764
No 36
>PRK04374 PII uridylyl-transferase; Provisional
Probab=93.44 E-value=0.96 Score=42.52 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=57.0
Q ss_pred CCCeEEEE---EcCCeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEE-EEeCCeEEEEEEEEeeccCcccchHHHHH
Q 032643 54 NLPVVELR---DLGSSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASF-STIGDKIFHTVRAQAKISRLGVETSIACQ 129 (136)
Q Consensus 54 ~~p~V~V~---~~~~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~-s~~~~r~fhtI~~qv~~~~~~~d~~~l~e 129 (136)
..|.|.+. +..++.+|.+.+ .+++++|+++-.+|...|++|++|.. +..+|.++=+++..-.+....-...++.+
T Consensus 675 ~~~~v~~~~~~~~~~~~~v~v~~-~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~ 753 (869)
T PRK04374 675 GQTLVKARRAVPDNDALEVFVYS-PDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAA 753 (869)
T ss_pred CCCeEEEeeeccCCCeEEEEEEe-CCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHH
Confidence 34655553 345778886654 47899999999999999999999996 46899999999887543321122344555
Q ss_pred HHhhhh
Q 032643 130 RLHDLV 135 (136)
Q Consensus 130 rL~~~i 135 (136)
.|.+.+
T Consensus 754 ~l~~~l 759 (869)
T PRK04374 754 ALRQVL 759 (869)
T ss_pred HHHHHH
Confidence 555543
No 37
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.43 E-value=0.87 Score=27.79 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=39.3
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEEe-----CCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 75 VQRNFMLYEVISILEEEGAQVVSASFSTI-----GDKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 75 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-----~~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
.++++.|.+++.+|.++|+++.+..+... ++.....+..++.+ .-+...+-++|++
T Consensus 6 ~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~---~~~l~~l~~~l~~ 66 (73)
T cd04886 6 PDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG---AEHIEEIIAALRE 66 (73)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC---HHHHHHHHHHHHH
Confidence 46899999999999999999998887654 24444445555532 2445677777765
No 38
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.26 E-value=1.3 Score=28.36 Aligned_cols=59 Identities=8% Similarity=-0.032 Sum_probs=40.9
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEEeCC-eEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 75 VQRNFMLYEVISILEEEGAQVVSASFSTIGD-KIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 75 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~-r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
.++++.|++||.+|.+.|+.+.+--|.-..+ .--|.+..++.......+...+-++|++
T Consensus 7 ~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 7 KNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred CCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999997765443 5557777777643112334455555554
No 39
>PRK05092 PII uridylyl-transferase; Provisional
Probab=93.22 E-value=1.3 Score=41.69 Aligned_cols=80 Identities=18% Similarity=0.178 Sum_probs=56.1
Q ss_pred CCCeEEEEEcC--CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEE-EeCCeEEEEEEEEeeccCcccc---hHHH
Q 032643 54 NLPVVELRDLG--SSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFS-TIGDKIFHTVRAQAKISRLGVE---TSIA 127 (136)
Q Consensus 54 ~~p~V~V~~~~--~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s-~~~~r~fhtI~~qv~~~~~~~d---~~~l 127 (136)
..|.|.++... ++.+|.+++ .++++.|+++..+|...|++|++|... ..|++++=++..+-......-+ ..+|
T Consensus 718 ~~~~v~~~~~~~~~~t~v~I~~-~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~~l 796 (931)
T PRK05092 718 RPLATEVRPDPARGVTEVTVLA-ADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLARL 796 (931)
T ss_pred CCcEEEEEecCCCCeEEEEEEe-CCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHHHH
Confidence 45778777643 577776654 488999999999999999999999965 5788888878766433321112 3455
Q ss_pred HHHHhhh
Q 032643 128 CQRLHDL 134 (136)
Q Consensus 128 ~erL~~~ 134 (136)
.+.|.++
T Consensus 797 ~~~L~~~ 803 (931)
T PRK05092 797 AKAIEDA 803 (931)
T ss_pred HHHHHHH
Confidence 5555544
No 40
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=92.43 E-value=1.8 Score=40.79 Aligned_cols=80 Identities=6% Similarity=0.074 Sum_probs=57.0
Q ss_pred CCCeEEEEEcC-----CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEE-EEeCCeEEEEEEEEeeccCccc-ch--
Q 032643 54 NLPVVELRDLG-----SSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASF-STIGDKIFHTVRAQAKISRLGV-ET-- 124 (136)
Q Consensus 54 ~~p~V~V~~~~-----~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~-s~~~~r~fhtI~~qv~~~~~~~-d~-- 124 (136)
..|.|.+++.. ++.+|.+ .+.++++.|+++..+|...|++|++|.. |..+|.++=+++.+-.++.... +.
T Consensus 687 ~~~~v~~~~~~~~~~~~~t~V~V-~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r 765 (895)
T PRK00275 687 GGPLVLIKETTQREFEGGTQIFI-YAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPAR 765 (895)
T ss_pred CCCeEEEEecCccCCCCeEEEEE-EeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHH
Confidence 34666676543 5677755 4558899999999999999999999995 6788899999888765544212 22
Q ss_pred -HHHHHHHhhh
Q 032643 125 -SIACQRLHDL 134 (136)
Q Consensus 125 -~~l~erL~~~ 134 (136)
.++.+.|.+.
T Consensus 766 ~~~i~~~L~~~ 776 (895)
T PRK00275 766 IEQIREGLTEA 776 (895)
T ss_pred HHHHHHHHHHH
Confidence 2355555544
No 41
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=92.31 E-value=0.12 Score=31.67 Aligned_cols=22 Identities=41% Similarity=0.532 Sum_probs=18.2
Q ss_pred CChhhhHHHHHHHHHHHHHHHH
Q 032643 2 LSQEDQLDLACCYIKQLRERID 23 (136)
Q Consensus 2 ~s~~d~l~eA~~YIk~Lq~kve 23 (136)
++-...|..|++||+.|+++++
T Consensus 39 ~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 39 LSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred CCHHHHHHHHHHHHHHHHHHhC
Confidence 3556789999999999998763
No 42
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=92.19 E-value=0.14 Score=31.33 Aligned_cols=18 Identities=50% Similarity=0.564 Sum_probs=15.5
Q ss_pred CChhhhHHHHHHHHHHHH
Q 032643 2 LSQEDQLDLACCYIKQLR 19 (136)
Q Consensus 2 ~s~~d~l~eA~~YIk~Lq 19 (136)
+|-.+.|..|+.||++||
T Consensus 38 ~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 38 LSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhC
Confidence 356778999999999997
No 43
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=92.04 E-value=0.2 Score=31.14 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=40.8
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 71 LISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 71 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
++...+++++|.++..+|.++|+.+.+.+....++..+-.+...+. +...+-++|+++
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~------~l~~li~~l~~~ 60 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE------VSEELLEALRAI 60 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC------CCHHHHHHHHcC
Confidence 3455678999999999999999999776544334554444444442 667888888763
No 44
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.89 E-value=1 Score=27.37 Aligned_cols=50 Identities=22% Similarity=0.181 Sum_probs=34.4
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEeC--CeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTIG--DKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
++++.|.+++.+|.++|+.+.+...+... +.....++.+ . ..++.+.|++
T Consensus 8 d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve--~------~~~~~~~L~~ 59 (65)
T cd04882 8 DKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE--D------IEKAIEVLQE 59 (65)
T ss_pred CCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC--C------HHHHHHHHHH
Confidence 58999999999999999999877654332 4444444433 2 4566666654
No 45
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=91.67 E-value=1.6 Score=35.81 Aligned_cols=62 Identities=18% Similarity=0.116 Sum_probs=47.4
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEEE--eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 71 LISGVQRNFMLYEVISILEEEGAQVVSASFST--IGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 71 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~--~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
-+.|.++++...+|-++|-+.|+++.+.+.++ .++. .++..++.-..-..+.++|.+.|.++
T Consensus 10 tv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~--F~m~i~v~~~~~~~~~~~L~~~L~~l 73 (286)
T PRK06027 10 TLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGR--FFMRVEFEGDGLIFNLETLRADFAAL 73 (286)
T ss_pred EEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCe--EEEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 34677899999999999999999999999998 7773 44455554311235578898888765
No 46
>PRK03059 PII uridylyl-transferase; Provisional
Probab=91.57 E-value=2.5 Score=39.62 Aligned_cols=64 Identities=14% Similarity=0.253 Sum_probs=51.0
Q ss_pred CCCeEEEEEc--CCeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEE-EEeCCeEEEEEEEEeecc
Q 032643 54 NLPVVELRDL--GSSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASF-STIGDKIFHTVRAQAKIS 118 (136)
Q Consensus 54 ~~p~V~V~~~--~~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~-s~~~~r~fhtI~~qv~~~ 118 (136)
..|.|.++.. .++.+|.+.| .++++.|+++-.+|...|++|++|.. +..+|.++=+++.+-...
T Consensus 664 ~~~~v~~~~~~~~~~~~v~i~~-~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~ 730 (856)
T PRK03059 664 DTPIVRARLSPAGEGLQVMVYT-PDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEE 730 (856)
T ss_pred CCCeEEEEecCCCCeEEEEEEe-cCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCC
Confidence 3465557653 4677886654 48899999999999999999999997 678999999999876443
No 47
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=91.56 E-value=1.8 Score=26.13 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=39.7
Q ss_pred cCCCcccHHHHHHHHHHcCceEEEeEEEEeC--CeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 74 GVQRNFMLYEVISILEEEGAQVVSASFSTIG--DKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 74 ~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
..+.+++|.++..+|.++|+.+.+..+...+ +... +...+.+ . ....+-++|+++
T Consensus 6 ~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~--~~~~v~~-~---~~~~l~~~l~~~ 62 (71)
T cd04879 6 HKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAY--MVLDVDS-P---VPEEVLEELKAL 62 (71)
T ss_pred ecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEE--EEEEcCC-C---CCHHHHHHHHcC
Confidence 3457899999999999999999999876544 4444 4444433 2 356888888764
No 48
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=91.55 E-value=1.5 Score=36.01 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=49.6
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEE-eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 72 ISGVQRNFMLYEVISILEEEGAQVVSASFST-IGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 72 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~-~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
+.|.++++...+|-+.|-+.|+++.+.+..+ .++..|+ +.+++..+. +.+.+.|++.|.++
T Consensus 12 v~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~-m~~~~~~p~-~~~~~~L~~~L~~l 73 (286)
T PRK13011 12 LSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFF-MRVEFHSEE-GLDEDALRAGFAPI 73 (286)
T ss_pred EEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEE-EEEEEecCC-CCCHHHHHHHHHHH
Confidence 4577899999999999999999999999874 4555555 577886544 67889999998875
No 49
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=91.42 E-value=1.8 Score=35.46 Aligned_cols=63 Identities=16% Similarity=0.308 Sum_probs=47.7
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeC--CeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 69 VVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIG--DKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 69 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
|+.+.|.++++..+.|=+.|-+.|+++++.+.+.-. ++.| +..++..+...++.+.+.+.|.+
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~--mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFF--MRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEE--EEEEEEeCCCCCCHHHHHHHHHH
Confidence 345677889999999999999999999999988754 5444 44455433334677888888877
No 50
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=91.42 E-value=1.4 Score=24.17 Aligned_cols=54 Identities=24% Similarity=0.220 Sum_probs=34.9
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHH
Q 032643 75 VQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRL 131 (136)
Q Consensus 75 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL 131 (136)
.+++..|.+++.+|.+.|+.+.....+..++.-...+...+... . +..++.++|
T Consensus 6 ~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~l 59 (60)
T cd02116 6 PDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGD--G-DLEKLLEAL 59 (60)
T ss_pred cCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEech--H-HHHHHHHHh
Confidence 35678999999999999999999987655422122233333321 1 556666655
No 51
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=91.37 E-value=0.99 Score=28.10 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=41.7
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEE--eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 72 ISGVQRNFMLYEVISILEEEGAQVVSASFST--IGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 72 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~--~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
+...+.++.+.++.++|.++|+++.+...+. -+++.+..++.+... ...+-++|++.
T Consensus 4 v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~------~~~~~~~l~~~ 62 (73)
T cd04902 4 VRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPV------PDEVLEELRAL 62 (73)
T ss_pred EEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCC------CHHHHHHHHcC
Confidence 3455689999999999999999998887654 457777777665421 34666777653
No 52
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=91.35 E-value=1.8 Score=25.19 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=40.3
Q ss_pred cCCCcccHHHHHHHHHHcCceEEEeEEEEeC-CeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 74 GVQRNFMLYEVISILEEEGAQVVSASFSTIG-DKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 74 ~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
..++++.+.++.+.|.++|+++.+......+ +.....+...+.. ..+..++.++|..+
T Consensus 5 ~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~ 63 (71)
T cd04876 5 AIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD---LEHLARIMRKLRQI 63 (71)
T ss_pred EeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC---HHHHHHHHHHHhCC
Confidence 3457889999999999999999998876554 4333334443332 34667777777653
No 53
>PRK08577 hypothetical protein; Provisional
Probab=91.12 E-value=2.1 Score=30.93 Aligned_cols=60 Identities=13% Similarity=0.219 Sum_probs=43.0
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEEeC-CeEEE-EEEEEeeccCcccchHHHHHHHhhh
Q 032643 73 SGVQRNFMLYEVISILEEEGAQVVSASFSTIG-DKIFH-TVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 73 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fh-tI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
...+.++.|.++..+|.++|+++.+.++.... +..++ .+...+.+. ..+.+.+.++|+++
T Consensus 62 ~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~--~~~l~~l~~~L~~l 123 (136)
T PRK08577 62 VVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS--DIDLEELEEELKKL 123 (136)
T ss_pred EEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc--hhhHHHHHHHHHcC
Confidence 34567899999999999999999998876544 44333 334455432 25678899988764
No 54
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=90.95 E-value=1.4 Score=28.32 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=40.0
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 73 SGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 73 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
.+.++++.|.+|..++.++|+.+.+..+..- +.++ +..++.+ --+++.+-.||+++
T Consensus 6 ~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~--l~i~v~~---~~~L~~li~~L~~i 61 (74)
T cd04877 6 TCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIY--LNFPTIE---FEKLQTLMPEIRRI 61 (74)
T ss_pred EEEccchHHHHHHHHHHHCCCceEEEEEecC-CeEE--EEeEecC---HHHHHHHHHHHhCC
Confidence 4457889999999999999999999998653 3322 3334443 23567888888764
No 55
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.71 E-value=2.5 Score=25.60 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=39.1
Q ss_pred cCCCcccHHHHHHHHHHcCceEEEeEEEEe--CCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 74 GVQRNFMLYEVISILEEEGAQVVSASFSTI--GDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 74 ~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~--~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
..+.++.|.+++..|.++|+.+.+...... ++..+.. ..+.+. +...+-++|+++
T Consensus 6 ~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~--i~v~~~----~~~~~i~~l~~~ 62 (71)
T cd04903 6 HKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMV--IEVDQP----IDEEVIEEIKKI 62 (71)
T ss_pred eCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEE--EEeCCC----CCHHHHHHHHcC
Confidence 346788999999999999999998876542 3343333 455432 667888888764
No 56
>PLN03217 transcription factor ATBS1; Provisional
Probab=90.23 E-value=0.68 Score=31.96 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=28.3
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 3 SQEDQLDLACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 3 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
|-.--+-|+.+||+.|+..|+.|.++=-+|+..
T Consensus 46 saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 46 SAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445568899999999999999999998888765
No 57
>PRK04435 hypothetical protein; Provisional
Probab=90.18 E-value=2.5 Score=31.29 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=51.9
Q ss_pred EEEEEcCCeeEEEEE-ecCCCcccHHHHHHHHHHcCceEEEeEEEE-eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 58 VELRDLGSSIEVVLI-SGVQRNFMLYEVISILEEEGAQVVSASFST-IGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 58 V~V~~~~~~~eV~l~-s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~-~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
+..+....|=.+.+. ...+.++.|++|+.+|.++|++|..-+.+. .++...-+|-.++.+. ..+...+-++|+++
T Consensus 59 f~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~--~~~L~~Li~~L~~i 135 (147)
T PRK04435 59 FPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM--EGDIDELLEKLRNL 135 (147)
T ss_pred ECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh--HHHHHHHHHHHHcC
Confidence 333443344444442 233578999999999999999999988764 4566666677776542 35778888888764
No 58
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.06 E-value=2.9 Score=25.40 Aligned_cols=57 Identities=7% Similarity=0.052 Sum_probs=38.2
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 73 SGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 73 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
...+.++.|++++..|.++|+.+.+......++..+ .+...+... -....+-++|++
T Consensus 6 ~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~-~~~i~~~~~---~~~~~~~~~L~~ 62 (72)
T cd04874 6 IAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKA-RIYMELEGV---GDIEELVEELRS 62 (72)
T ss_pred EeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeE-EEEEEEecc---ccHHHHHHHHhC
Confidence 445678999999999999999999887654432222 233455432 244577777765
No 59
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=88.36 E-value=5.1 Score=25.92 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=34.1
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEe-CCeEEEEEEEEeec
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTI-GDKIFHTVRAQAKI 117 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~~r~fhtI~~qv~~ 117 (136)
++++.|++++.+|.+.|+.+.+-.+.-. ++.--|.++.+...
T Consensus 10 d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~ 52 (80)
T cd04905 10 NKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEG 52 (80)
T ss_pred CCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEEC
Confidence 5789999999999999999998876544 34666888888764
No 60
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=88.22 E-value=3.1 Score=34.22 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=48.8
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEE--EeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 69 VVLISGVQRNFMLYEVISILEEEGAQVVSASFS--TIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 69 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s--~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
|+.+.|.++++....|=..|-|.|+++++.+.. ...+..|=.+........ .++.+.|.+.|.++
T Consensus 11 iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~-~~~~~~l~~~l~~l 77 (289)
T PRK13010 11 VLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAE-AASVDTFRQEFQPV 77 (289)
T ss_pred EEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCC-CCCHHHHHHHHHHH
Confidence 444567789999999999999999999999985 455666655444432222 67889999888765
No 61
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=87.75 E-value=3.5 Score=31.95 Aligned_cols=63 Identities=6% Similarity=0.056 Sum_probs=53.8
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEEEe----CCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 71 LISGVQRNFMLYEVISILEEEGAQVVSASFSTI----GDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 71 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~----~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
-+.|.++|+..++|-++|-+.|+++.+-++-+. .+.-.|.+++++.-+. +.+...|++.|.++
T Consensus 99 ~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~-~~~~~~L~~~l~~l 165 (190)
T PRK11589 99 QVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPA-SQDAANIEQAFKAL 165 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCC-CCCHHHHHHHHHHH
Confidence 346888999999999999999999999888755 4677888999998775 77889999988876
No 62
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=87.29 E-value=4.4 Score=25.20 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=35.5
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
++++.|.+|+.+|.++|+++.+-.....+++ -.++.... |.+++.+-|++
T Consensus 10 d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~~------~~~~~~~~L~~ 59 (66)
T cd04908 10 NKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIVS------DPDKAKEALKE 59 (66)
T ss_pred CCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEEC------CHHHHHHHHHH
Confidence 5799999999999999999998876655554 33444332 23466666654
No 63
>PRK07334 threonine dehydratase; Provisional
Probab=86.94 E-value=4.4 Score=34.42 Aligned_cols=67 Identities=13% Similarity=0.114 Sum_probs=47.8
Q ss_pred CeeEEEE-EecCCCcccHHHHHHHHHHcCceEEEeEEEEe-----CCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 65 SSIEVVL-ISGVQRNFMLYEVISILEEEGAQVVSASFSTI-----GDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 65 ~~~eV~l-~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-----~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
.|+.+.+ +...++++.|.+|+.+|-++|++|.+.++..- ++...-.+..+|.+. -.+.++-.||++.
T Consensus 323 ~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~---~~L~~vi~~Lr~~ 395 (403)
T PRK07334 323 AGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDA---AHLQEVIAALRAA 395 (403)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCH---HHHHHHHHHHHHc
Confidence 4644444 45667899999999999999999999998643 455445555666542 3557888888763
No 64
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.30 E-value=6 Score=24.91 Aligned_cols=28 Identities=21% Similarity=0.152 Sum_probs=24.8
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEe
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTI 103 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~ 103 (136)
++|+.|.+++..|.++|+.+++-.....
T Consensus 8 d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 8 DKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred CCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5899999999999999999999876654
No 65
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=85.66 E-value=5.8 Score=23.85 Aligned_cols=57 Identities=11% Similarity=0.064 Sum_probs=39.3
Q ss_pred cCCCcccHHHHHHHHHHcCceEEEeEEEEe--CCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 74 GVQRNFMLYEVISILEEEGAQVVSASFSTI--GDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 74 ~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~--~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
..+.++.|.++...|.++|+.+.+...... ++.....+...+. . -+.+.+-++|+++
T Consensus 7 ~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~l~~~l~~~ 65 (72)
T cd04878 7 VENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGD--D--DVIEQIVKQLNKL 65 (72)
T ss_pred EcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECC--H--HHHHHHHHHHhCC
Confidence 346788999999999999999998887653 3444444444432 1 3457777777654
No 66
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=84.79 E-value=3 Score=32.32 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=45.8
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 72 ISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 72 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
+-|.++++...+|-++|.+.|+++++++.+..++ +.++...|..+. ....+|...|..+
T Consensus 13 viG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg--~Fa~i~lvs~~~--~~~~~le~~L~~l 71 (190)
T PRK11589 13 ALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGE--EFTFIMLLSGSW--NAITLIESTLPLK 71 (190)
T ss_pred EEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCC--ceEEEEEEeCCh--hHHHHHHHHHHhh
Confidence 4577899999999999999999999999999998 444444554443 3557777777654
No 67
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=84.50 E-value=4.7 Score=25.53 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=44.1
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
++++-|.+|+.+|.--|+++-+=+.+..++--++.|-..+.+.. -....+...|.++++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~--~~i~~l~~Ql~Klid 59 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD--REIEQLVKQLEKLID 59 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C--CHHHHHHHHHHCSTT
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc--hhHHHHHHHHhccCC
Confidence 35788999999999999999988888766655666666776532 355789999988875
No 68
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=83.30 E-value=2 Score=29.82 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=50.6
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 69 VVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 69 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
|+-++|.++++--..|-.+|-|.|+++++-+=+...+++=-.+. |..+.-..|.+.+.++|.+.
T Consensus 5 vITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~l--V~~~~~~~d~~~lr~~l~~~ 68 (90)
T COG3830 5 VITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIML--VDISKEVVDFAALRDELAAE 68 (90)
T ss_pred EEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeE--EcCChHhccHHHHHHHHHHH
Confidence 44467888999999999999999999999998888886644444 44443468889999888754
No 69
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.40 E-value=9 Score=23.44 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=39.8
Q ss_pred cCCCcccHHHHHHHHHHcCceEEEeEEEEe-C-CeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 74 GVQRNFMLYEVISILEEEGAQVVSASFSTI-G-DKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 74 ~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~-~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
..++++.|.++..+|.++|+.+.+...... + +...-.+...+.+ .-+..++-++|+++
T Consensus 7 ~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~i~~L~~~ 66 (79)
T cd04881 7 VKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETS---EAALNAALAEIEAL 66 (79)
T ss_pred eCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCC---HHHHHHHHHHHHcC
Confidence 346788999999999999999998876544 2 4443344444432 34556777777753
No 70
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=81.92 E-value=6.5 Score=23.39 Aligned_cols=41 Identities=20% Similarity=0.126 Sum_probs=31.1
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEEeC-CeEEEEEEEEe
Q 032643 75 VQRNFMLYEVISILEEEGAQVVSASFSTIG-DKIFHTVRAQA 115 (136)
Q Consensus 75 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fhtI~~qv 115 (136)
.++++.|.++.+.|-++|+++.+......+ ++.+..|....
T Consensus 6 ~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 6 ENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 357899999999999999999887765444 66665555443
No 71
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=77.92 E-value=13 Score=35.11 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=57.6
Q ss_pred eEEEEEcCCeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEE-EEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 57 VVELRDLGSSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASF-STIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 57 ~V~V~~~~~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~-s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
..+++...+|.+|++-+. +++-.|+.+...+.-.|++|++|-. ++-+|+.+-|+.-+-.++ .-++..|..++..++
T Consensus 675 ~~~~r~~~~~teV~V~a~-d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g-~~~~~dr~~~~~~~l 751 (867)
T COG2844 675 LISVRPHSGGTEVFVYAP-DRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDG-FPVEEDRRAALRGEL 751 (867)
T ss_pred eeeecccCCceEEEEEcC-CCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCC-CccchhHHHHHHHHH
Confidence 345677889999988755 6789999999999999999999996 678999999997664332 135555555544444
No 72
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.70 E-value=19 Score=24.45 Aligned_cols=43 Identities=12% Similarity=-0.030 Sum_probs=31.3
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEEe-CCeEEEEEEEEeec
Q 032643 75 VQRNFMLYEVISILEEEGAQVVSASFSTI-GDKIFHTVRAQAKI 117 (136)
Q Consensus 75 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~~r~fhtI~~qv~~ 117 (136)
.++++.|+++|.+|.+.|+.+..=-|--. +..-=|.+...+..
T Consensus 22 ~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg 65 (90)
T cd04931 22 KEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDK 65 (90)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 44799999999999999999988776432 23333666666653
No 73
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=77.04 E-value=21 Score=33.04 Aligned_cols=75 Identities=8% Similarity=0.088 Sum_probs=53.2
Q ss_pred eEEEEEcCC---eeEEEE-EecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeE-EEEEEEEeeccCcccchHHHHHHH
Q 032643 57 VVELRDLGS---SIEVVL-ISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKI-FHTVRAQAKISRLGVETSIACQRL 131 (136)
Q Consensus 57 ~V~V~~~~~---~~eV~l-~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~-fhtI~~qv~~~~~~~d~~~l~erL 131 (136)
.|.|++-.. .+.+.+ +.+.+.++.|.+|..++-+.|+.+.+.++...+++. .=.|..+|.+. -.+.++-.+|
T Consensus 612 ~i~v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~---~~L~~i~~~L 688 (702)
T PRK11092 612 FMAVEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDR---VHLANIMRKI 688 (702)
T ss_pred eEEeEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCH---HHHHHHHHHH
Confidence 466776432 455555 567788999999999999999999999986554433 33456666542 4567887777
Q ss_pred hhh
Q 032643 132 HDL 134 (136)
Q Consensus 132 ~~~ 134 (136)
+.+
T Consensus 689 r~i 691 (702)
T PRK11092 689 RVM 691 (702)
T ss_pred hCC
Confidence 754
No 74
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=75.96 E-value=21 Score=35.97 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=46.9
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEe---CCeEEEEEEEEeeccCc-ccchHHHHHHHhhhh
Q 032643 67 IEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTI---GDKIFHTVRAQAKISRL-GVETSIACQRLHDLV 135 (136)
Q Consensus 67 ~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~---~~r~fhtI~~qv~~~~~-~~d~~~l~erL~~~i 135 (136)
+...+. ..+++.+||+|+-+||..|+.|+....-.+ ++..++-....+..... .+|.+.+.++|.+.+
T Consensus 490 ~~lkiy-~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~ 561 (1528)
T PF05088_consen 490 LRLKIY-HPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAF 561 (1528)
T ss_pred EEEEEE-cCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCccccHHHHHHHHHHHH
Confidence 444444 345789999999999999999999985432 34444444444433322 488899999987754
No 75
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=75.33 E-value=26 Score=32.70 Aligned_cols=75 Identities=13% Similarity=0.093 Sum_probs=53.1
Q ss_pred eEEEEEcCC---eeEEEE-EecCCCcccHHHHHHHHHHcCceEEEeEEEEeC--CeEEEEEEEEeeccCcccchHHHHHH
Q 032643 57 VVELRDLGS---SIEVVL-ISGVQRNFMLYEVISILEEEGAQVVSASFSTIG--DKIFHTVRAQAKISRLGVETSIACQR 130 (136)
Q Consensus 57 ~V~V~~~~~---~~eV~l-~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--~r~fhtI~~qv~~~~~~~d~~~l~er 130 (136)
.+.|++-.. .+.+.+ +.+.++++.|.+|..++-++++.+.+.++.... +...=++-.+|.+ --.++++-.+
T Consensus 652 ~I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~---~~~L~~l~~~ 728 (743)
T PRK10872 652 IVDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN---LQVLGRVLGK 728 (743)
T ss_pred EEEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC---HHHHHHHHHH
Confidence 567776432 466665 677889999999999999999999999986543 3333344455654 3456888888
Q ss_pred Hhhh
Q 032643 131 LHDL 134 (136)
Q Consensus 131 L~~~ 134 (136)
|+.+
T Consensus 729 L~~i 732 (743)
T PRK10872 729 LNQV 732 (743)
T ss_pred HhcC
Confidence 8764
No 76
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=75.25 E-value=5 Score=24.43 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 032643 15 IKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l~~~ 35 (136)
|.++-++|.+|++||+.|...
T Consensus 21 iedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 21 IEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567788999999999998753
No 77
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=74.11 E-value=25 Score=26.36 Aligned_cols=75 Identities=12% Similarity=0.199 Sum_probs=53.7
Q ss_pred EEEEEcCCeeEEEEEecCC-CcccHHHHHHHHHHcCceEEEeEEE-EeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 58 VELRDLGSSIEVVLISGVQ-RNFMLYEVISILEEEGAQVVSASFS-TIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 58 V~V~~~~~~~eV~l~s~~~-~~~~Ls~vl~vLeEeGl~Vvsa~~s-~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
+-+......-.+.++=.++ ..++||++|.++-++++.|+.-+=+ -.++|.=-||-.... .+.-|...+-++|+++
T Consensus 62 fpf~~m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s--sm~~~V~~ii~kl~k~ 138 (150)
T COG4492 62 FPFYDMLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS--SMEKDVDKIIEKLRKV 138 (150)
T ss_pred eehhhcccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch--hhhhhHHHHHHHHhcc
Confidence 3344455555666654554 8899999999999999999998876 478887666666554 3456667777777654
No 78
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=73.34 E-value=8.9 Score=25.31 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032643 6 DQLDLACCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~kk~~l 32 (136)
..|..|+.=|.-||.++++|+++...|
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 468899999999999999999985444
No 79
>PF14992 TMCO5: TMCO5 family
Probab=73.02 E-value=5.5 Score=32.94 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 032643 8 LDLACCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 8 l~eA~~YIk~Lq~kve~L~~kk~~l 32 (136)
-.+|++||+.||+++++++..|+.+
T Consensus 146 ~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 146 CEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999988754
No 80
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=73.00 E-value=22 Score=22.80 Aligned_cols=43 Identities=9% Similarity=0.015 Sum_probs=31.3
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEEeCC-eEEEEEEEEeec
Q 032643 75 VQRNFMLYEVISILEEEGAQVVSASFSTIGD-KIFHTVRAQAKI 117 (136)
Q Consensus 75 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~-r~fhtI~~qv~~ 117 (136)
.++++.|+++|.+|.+.|+.+..=-|--..+ .-=|.+.-++..
T Consensus 8 ~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 8 KEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 4579999999999999999998877743332 233666666653
No 81
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=72.14 E-value=17 Score=27.36 Aligned_cols=58 Identities=17% Similarity=0.152 Sum_probs=42.1
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEEeC--CeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 75 VQRNFMLYEVISILEEEGAQVVSASFSTIG--DKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 75 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
-++++.|++|..+|-+.|+++.+-.....+ +..-.||+..-. .-....+...|.++++
T Consensus 9 en~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d----~~~i~qi~kQl~Kli~ 68 (157)
T TIGR00119 9 ENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD----DKVLEQITKQLNKLVD 68 (157)
T ss_pred cCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC----HHHHHHHHHHHhcCcc
Confidence 368999999999999999999988876555 344455555442 2345777888887764
No 82
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=72.13 E-value=17 Score=27.56 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=41.4
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEEeC--CeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 75 VQRNFMLYEVISILEEEGAQVVSASFSTIG--DKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 75 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
-++++.|++|..+|.+.|+++.+-.....+ +..-.||+.+..+ -..+.+...|.++++
T Consensus 10 eN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~----~~i~qi~kQl~KLid 69 (161)
T PRK11895 10 ENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE----QVIEQITKQLNKLID 69 (161)
T ss_pred cCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH----HHHHHHHHHHhcccc
Confidence 368999999999999999999988776444 4444566555422 233677777777764
No 83
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.10 E-value=7.8 Score=25.85 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 6 DQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
..|-.|+.-|.=||-.|++|++|...|..
T Consensus 11 ~KiqqAvdTI~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 45778999999999999999999876644
No 84
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.99 E-value=24 Score=21.65 Aligned_cols=52 Identities=19% Similarity=0.238 Sum_probs=37.1
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEE--eCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFST--IGDKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~--~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
++++.|.++++.|.++|+.+.+..... .++.....|+.... |..++.+.|++
T Consensus 10 d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~------~~~~~~~~L~~ 63 (72)
T cd04883 10 DRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTM------NPRPIIEDLRR 63 (72)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecC------CHHHHHHHHHH
Confidence 478899999999999999998776543 34566666665542 22477777664
No 85
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=68.44 E-value=28 Score=23.06 Aligned_cols=58 Identities=21% Similarity=0.239 Sum_probs=45.3
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
++++-|.+|+.+|.--|+++-+=+....++.-+..|-.-|.+. -..+.+..-|.+++|
T Consensus 12 n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~---~~i~ql~kQL~KL~d 69 (76)
T PRK11152 12 FRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASE---RPIDLLSSQLNKLVD 69 (76)
T ss_pred CCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCC---chHHHHHHHHhcCcC
Confidence 5889999999999999999998888776666566676666532 344788888888765
No 86
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=68.33 E-value=49 Score=30.47 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=52.0
Q ss_pred eEEEEEcCC---eeEEEE-EecCCCcccHHHHHHHHHHcCceEEEeEEEEeC-CeEEEEEEEEeeccCcccchHHHHHHH
Q 032643 57 VVELRDLGS---SIEVVL-ISGVQRNFMLYEVISILEEEGAQVVSASFSTIG-DKIFHTVRAQAKISRLGVETSIACQRL 131 (136)
Q Consensus 57 ~V~V~~~~~---~~eV~l-~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fhtI~~qv~~~~~~~d~~~l~erL 131 (136)
.+.|++-.+ .+.+.+ +...++++.|.+|..++-++|+++.+.++.... +...-.|..+|.+ --.+.++-.+|
T Consensus 596 ~I~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~---~~~L~~ii~~L 672 (683)
T TIGR00691 596 IIEVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN---YKHLLKIMLKI 672 (683)
T ss_pred EEEEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC---HHHHHHHHHHH
Confidence 566665332 455555 567788999999999999999999999987653 4443345566654 24557777777
Q ss_pred hh
Q 032643 132 HD 133 (136)
Q Consensus 132 ~~ 133 (136)
+.
T Consensus 673 ~~ 674 (683)
T TIGR00691 673 KT 674 (683)
T ss_pred hC
Confidence 64
No 87
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=67.83 E-value=25 Score=32.64 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=56.6
Q ss_pred eEEEEEcC---CeeEEEE-EecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHh
Q 032643 57 VVELRDLG---SSIEVVL-ISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLH 132 (136)
Q Consensus 57 ~V~V~~~~---~~~eV~l-~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~ 132 (136)
.+.|..-. ..+.+.+ +.+.++++.|.+|.++|-+++..|.+.++... +.-+++|+..+.-.. --.+.++-.||+
T Consensus 613 ~i~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~-~~~~~~~~~~i~v~n-~~~L~~i~~~l~ 690 (701)
T COG0317 613 VIDVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSD-KDQFATMQFTIEVKN-LNHLGRVLARLK 690 (701)
T ss_pred EEEEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecccc-CCceEEEEEEEEECc-HHHHHHHHHHHh
Confidence 56665433 3566665 57778999999999999999999999998766 666777777665433 456688888887
Q ss_pred hh
Q 032643 133 DL 134 (136)
Q Consensus 133 ~~ 134 (136)
++
T Consensus 691 ~~ 692 (701)
T COG0317 691 QL 692 (701)
T ss_pred cC
Confidence 64
No 88
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=67.64 E-value=41 Score=31.15 Aligned_cols=69 Identities=13% Similarity=0.036 Sum_probs=51.0
Q ss_pred CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhh
Q 032643 65 SSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLV 135 (136)
Q Consensus 65 ~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i 135 (136)
.+-.|.++-..+.++.|++++-+|-=.|+.|.+|+..+ ++...-.+-....-+ ...|+.++.|.++..+
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~ 613 (693)
T PRK00227 545 EDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGP-QDFDPQEFLQAYKSGV 613 (693)
T ss_pred cCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCC-CCCChHHHHHHHHHhh
Confidence 44566666545679999999999999999999999988 666544333333322 3689999999888654
No 89
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=66.65 E-value=12 Score=25.28 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 6 DQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
..|..|+.-|-=||-.|++|++|...|..
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999999999999999999877754
No 90
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=66.36 E-value=6.8 Score=33.63 Aligned_cols=29 Identities=21% Similarity=0.434 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 6 DQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
.++++-+.|.+.|++|+|++...|.++..
T Consensus 139 ~r~n~l~eY~q~Laek~Ek~e~drkK~a~ 167 (449)
T KOG3896|consen 139 NRLNELTEYMQRLAEKIEKAEKDRKKGAS 167 (449)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhcccc
Confidence 46899999999999999999877766543
No 91
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.44 E-value=40 Score=22.13 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=47.2
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 73 SGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 73 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
...++.+.=.++.+++.|-|+.+.-.-+|+-|.-.|-.+-.--..+.+.++-+-|.+||.++
T Consensus 6 nCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 6 NCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred eCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 33456777889999999999999999999988765555544444445578889999999764
No 92
>PRK14639 hypothetical protein; Provisional
Probab=62.59 E-value=31 Score=25.36 Aligned_cols=51 Identities=10% Similarity=0.031 Sum_probs=38.0
Q ss_pred HHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 86 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 86 ~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
.++++.|+++++..+..-+++.+-.|.-.-.++-.-=||+++++.+.+++|
T Consensus 5 p~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~gv~iddC~~vSr~is~~LD 55 (140)
T PRK14639 5 ALCKECGVSFYDDELVSENGRKIYRVYITKEGGVNLDDCERLSELLSPIFD 55 (140)
T ss_pred HhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 567889999999999988877666776654333223478999999887664
No 93
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p. The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).
Probab=60.98 E-value=14 Score=27.76 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 5 EDQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 5 ~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
+.++.++.+-||+||++++.-+++|++...
T Consensus 77 ~~~~~~v~~~Ikel~k~~~~re~E~~e~~~ 106 (152)
T PF08644_consen 77 SRHLQEVFRQIKELQKRVKQREQERREKAD 106 (152)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 457999999999999999988776655443
No 94
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=60.85 E-value=16 Score=22.94 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 032643 12 CCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
-.||.+|+.++..|..+-+.|..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999998887754
No 95
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=57.69 E-value=15 Score=23.10 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=27.6
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeec
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKI 117 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~ 117 (136)
+.++.++++...|.++|+.|...+ .++++++=|..
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is-------S~~~~~ilV~~ 53 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS-------SEISISILVKE 53 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE-------ESSEEEEEEEG
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE-------EeeeEEEEEeH
Confidence 478999999999999999997766 46667777754
No 96
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.28 E-value=19 Score=22.67 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 032643 5 EDQLDLACCYIKQLRERIDKLN 26 (136)
Q Consensus 5 ~d~l~eA~~YIk~Lq~kve~L~ 26 (136)
....++|..||+++-+.++...
T Consensus 36 lg~~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 36 LGKYEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999998888774
No 97
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=57.10 E-value=45 Score=20.73 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=35.0
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEeC-CeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTIG-DKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
++|+-|.++++++-+ |++|+.-.+...+ +...-.+-.++.+. -+...+-+.|++
T Consensus 7 dkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~---~~~~~i~~~L~~ 61 (68)
T cd04885 7 ERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDR---EDLAELKERLEA 61 (68)
T ss_pred CCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 589999999999999 9999999887643 22222222344322 234566666654
No 98
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=56.70 E-value=53 Score=21.78 Aligned_cols=59 Identities=14% Similarity=0.225 Sum_probs=42.4
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
++++-|.+|..+|---|+++-+-+....++.-++-|-.-+.++. -..+.+...|.+++|
T Consensus 11 n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~--~~i~qi~kQL~KLid 69 (76)
T PRK06737 11 NDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE--NEATLLVSQLKKLIN 69 (76)
T ss_pred cCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH--HHHHHHHHHHhCCcC
Confidence 58999999999999999999988877656555554433433332 344678888888765
No 99
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.37 E-value=30 Score=28.17 Aligned_cols=90 Identities=13% Similarity=0.070 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-CCCc--------cc----cccCCCCCCCeEEEEEcCCeeEEEEEecCC
Q 032643 10 LACCYIKQLRERIDKLNRMKGQAMKSIKPNS-SNNI--------LD----ETNNICSNLPVVELRDLGSSIEVVLISGVQ 76 (136)
Q Consensus 10 eA~~YIk~Lq~kve~L~~kk~~l~~~~~~~~-~~~~--------~~----~~~~~~~~~p~V~V~~~~~~~eV~l~s~~~ 76 (136)
+=.+=++.+|+++.+|..+++.+-....+.. +... .. ..++..-..|-+.|.-.+.+-...-+++..
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v~V~G~Gl~ITi~d~~~~~~~~~~~~ 133 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSVPVTGPGLVITIDDPGYSPNGVGPNS 133 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcCCcEEEEecCCCCCcccCCCCc
Confidence 3445677888888888888876654332110 0000 00 001112223333322222221221122211
Q ss_pred ---CcccHHHHHHHHHHcCceEEEeE
Q 032643 77 ---RNFMLYEVISILEEEGAQVVSAS 99 (136)
Q Consensus 77 ---~~~~Ls~vl~vLeEeGl~Vvsa~ 99 (136)
++..|-.||..|-..|++-|+-+
T Consensus 134 ~vv~~~dl~~viNeL~~sGAEaIsIn 159 (247)
T COG3879 134 QVVHDDDLQAVINELNISGAEAISIN 159 (247)
T ss_pred cccCHHHHHHHHHHHHhccchheeEC
Confidence 55667789999999999987643
No 100
>PRK14638 hypothetical protein; Provisional
Probab=56.21 E-value=48 Score=24.66 Aligned_cols=51 Identities=10% Similarity=0.249 Sum_probs=36.1
Q ss_pred HHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcc-cchHHHHHHHhhhhC
Q 032643 86 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLG-VETSIACQRLHDLVD 136 (136)
Q Consensus 86 ~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~-~d~~~l~erL~~~i~ 136 (136)
.++++.|+++++..+..-++..+-.|.-.-.++.++ =||++++++|.+++|
T Consensus 16 ~i~~~~G~elvdve~~~~~~~~~lrV~ID~~~G~v~lddC~~vSr~is~~LD 67 (150)
T PRK14638 16 RIAEEQGLEIFDVQYRRESRGWVLRIIIDNPVGYVSVRDCELFSREIERFLD 67 (150)
T ss_pred HHHHHcCCEEEEEEEEecCCCcEEEEEEECCCCCcCHHHHHHHHHHHHHHhc
Confidence 356788999999999987766555655543323233 478999999987764
No 101
>PRK14644 hypothetical protein; Provisional
Probab=55.78 E-value=51 Score=24.17 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=36.9
Q ss_pred HHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 86 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 86 ~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
.++++.|+++++..+..-+++.+-.|.-.- ..-=||+++++.|..++|
T Consensus 6 ~~~~~~g~el~dve~~~~~~~~~LrV~Idk---~~iddC~~vSr~is~~LD 53 (136)
T PRK14644 6 KLLEKFGNKINEIKIVKEDGDLFLEVILNS---RDLKDIEELTKEISDFID 53 (136)
T ss_pred hhHHhcCCEEEEEEEEeCCCCEEEEEEECC---CCHHHHHHHHHHHHHHhc
Confidence 467889999999999988877766666532 124579999999988764
No 102
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.55 E-value=44 Score=20.10 Aligned_cols=49 Identities=8% Similarity=0.003 Sum_probs=30.9
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
.+..+.+++++|.+.|++|.--+.+.-+ .+|.+-+... |..++.+.|.+
T Consensus 14 ~~~~~~~if~~L~~~~I~v~~i~q~~s~----~~isf~v~~~----~~~~a~~~lh~ 62 (66)
T cd04919 14 MIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDEK----DAVKALNIIHT 62 (66)
T ss_pred CcCHHHHHHHHHHHCCCCEEEEEecCcc----ceEEEEEeHH----HHHHHHHHHHH
Confidence 5677999999999999999544433323 5555555432 33444444444
No 103
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.21 E-value=8.7 Score=28.29 Aligned_cols=29 Identities=3% Similarity=0.053 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032643 5 EDQLDLACCYIKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 5 ~d~l~eA~~YIk~Lq~kve~L~~kk~~l~ 33 (136)
|-++..+++|+.+++..+.+|-+||+++.
T Consensus 2 a~~~~~~~~~ye~~kaEL~elikkrqe~e 30 (135)
T KOG3856|consen 2 ASEMTDELKSYEDTKAELAELIKKRQELE 30 (135)
T ss_pred CccccccccchHHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999998763
No 104
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=55.08 E-value=39 Score=19.46 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=22.0
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFST 102 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~ 102 (136)
.+..+++++++|.+.|+.+.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 13 TPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred CccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 56679999999999999998887654
No 105
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.07 E-value=46 Score=20.28 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=35.7
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEEeC-C-eEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 75 VQRNFMLYEVISILEEEGAQVVSASFSTIG-D-KIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 75 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~-r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
.++++.|.+++..|.++|+++.+....... + .-...|..++. . |..++.+.|++
T Consensus 9 ~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~----~-~~~~~~~~L~~ 64 (69)
T cd04909 9 PDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ----E-DRERAKEILKE 64 (69)
T ss_pred CCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH----H-HHHHHHHHHHH
Confidence 457899999999999999999987654431 2 22223333321 2 56777777765
No 106
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=54.86 E-value=50 Score=23.92 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=39.6
Q ss_pred ccHHHHHHHHHHcCceEEEeEEEE-eCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 79 FMLYEVISILEEEGAQVVSASFST-IGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 79 ~~Ls~vl~vLeEeGl~Vvsa~~s~-~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
--+..++.+|.+.|++|..-.--- .++--++-+|.+..+ |+..+.+++++.++
T Consensus 68 ~EV~pvi~aL~~~GI~vtAlHNH~l~e~Prl~ymH~~~~g-----dp~~lA~~vr~Ald 121 (123)
T PF07485_consen 68 DEVNPVISALRKNGIEVTALHNHWLFEQPRLFYMHIWGVG-----DPAKLARKVRAALD 121 (123)
T ss_pred HHHHHHHHHHHHCCceEEEEecccccCCCCEEEEEEEecC-----CHHHHHHHHHHHHh
Confidence 356789999999999999888754 444344446887753 66888999988764
No 107
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=54.26 E-value=66 Score=22.79 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=30.3
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEEeC-CeEEEEEEEEeec
Q 032643 75 VQRNFMLYEVISILEEEGAQVVSASFSTIG-DKIFHTVRAQAKI 117 (136)
Q Consensus 75 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fhtI~~qv~~ 117 (136)
.++++-|.++|.+|.+.|+.+..=-|=-.. ..-=|.+...+..
T Consensus 49 ~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg 92 (115)
T cd04930 49 KEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEV 92 (115)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEe
Confidence 447899999999999999999877663322 2222665566654
No 108
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=53.60 E-value=35 Score=21.82 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032643 5 EDQLDLACCYIKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 5 ~d~l~eA~~YIk~Lq~kve~L~~kk~~l~ 33 (136)
.-.+.+|=+..+.|+.+|+.|+++-+++-
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34688999999999999999998877653
No 109
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=53.37 E-value=40 Score=18.97 Aligned_cols=26 Identities=27% Similarity=0.165 Sum_probs=21.4
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFST 102 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~ 102 (136)
.+..+.+++++|.+.|+.+..-+.+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 56679999999999999987776553
No 110
>PRK14646 hypothetical protein; Provisional
Probab=52.69 E-value=73 Score=23.79 Aligned_cols=53 Identities=8% Similarity=0.095 Sum_probs=38.3
Q ss_pred HHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeecc-Ccc-cchHHHHHHHhhhhC
Q 032643 84 VISILEEEGAQVVSASFSTIGDKIFHTVRAQAKIS-RLG-VETSIACQRLHDLVD 136 (136)
Q Consensus 84 vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~-~~~-~d~~~l~erL~~~i~ 136 (136)
+-.++++.|++++...+..-++..+-.|.-.-.+. .++ =||+++++.+-+++|
T Consensus 13 i~p~~~~~G~eLvdve~~~~~~~~~LrV~IDk~~g~gVtldDC~~vSr~is~~LD 67 (155)
T PRK14646 13 LEKVANEFDLKICSLNIQTNQNPIVIKIIIKKTNGDDISLDDCALFNTPASEEIE 67 (155)
T ss_pred HHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCccHHHHHHHHHHHHHHhC
Confidence 33457778999999999998887766777654321 233 368999999888764
No 111
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=51.87 E-value=84 Score=24.04 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=44.4
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 73 SGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 73 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
-..++|+.|.+|...|-..|+++-+-+.....+.-+..+-.-+.... -..+.+.+.|.++++
T Consensus 8 lv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~--~~ieqL~kQL~KLid 69 (174)
T CHL00100 8 LVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDD--RTIEQLTKQLYKLVN 69 (174)
T ss_pred EEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCH--HHHHHHHHHHHHHhH
Confidence 34578999999999999999999998886644444444444444321 125788889988864
No 112
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=51.44 E-value=44 Score=22.60 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=42.5
Q ss_pred EEEEEecCC--Cccc-HHHHHHHHHHcCc--eEEEeEEEEeC------CeEEEEEEEEe----------eccCcccchHH
Q 032643 68 EVVLISGVQ--RNFM-LYEVISILEEEGA--QVVSASFSTIG------DKIFHTVRAQA----------KISRLGVETSI 126 (136)
Q Consensus 68 eV~l~s~~~--~~~~-Ls~vl~vLeEeGl--~Vvsa~~s~~~------~r~fhtI~~qv----------~~~~~~~d~~~ 126 (136)
.|.++||.+ -..+ ..++=+.|+|+|+ +|..++.+.+. |-++.|.+..- ..-..++|-.+
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~iv~t~~~~~~~~~ip~~~~~~llt~~~~~~ 83 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLICTTARVDRSFGDIPLVHGMPFVSGVGIEA 83 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEEEECCccccccCCCCEEEEeecccccCHHH
Confidence 356677765 3334 4677788899997 57776654321 66777755321 11123788889
Q ss_pred HHHHHhhhh
Q 032643 127 ACQRLHDLV 135 (136)
Q Consensus 127 l~erL~~~i 135 (136)
+.+++.+.+
T Consensus 84 ~~e~i~~~l 92 (94)
T PRK10310 84 LQNKILTIL 92 (94)
T ss_pred HHHHHHHHH
Confidence 999888765
No 113
>PRK14640 hypothetical protein; Provisional
Probab=51.30 E-value=74 Score=23.63 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=35.8
Q ss_pred HHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 86 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 86 ~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
.++++.|++++.-.+..-++.-+-.|.---.++-.-=||++++++|..++|
T Consensus 14 p~~~~~G~el~dve~~~~~~~~~lrV~ID~~~gv~lddC~~vSr~is~~LD 64 (152)
T PRK14640 14 APVVALGFELWGIEFIRAGKHSTLRVYIDGENGVSVENCAEVSHQVGAIMD 64 (152)
T ss_pred HHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 456777999999999887765555665543333223368999999987764
No 114
>PF06673 L_lactis_ph-MCP: Lactococcus lactis bacteriophage major capsid protein; InterPro: IPR009559 This family consists of several Lactococcus lactis bacteriophage major capsid proteins.
Probab=49.36 E-value=19 Score=29.13 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 10 LACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 10 eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
||---+.+|..||++|++.|++|+.-
T Consensus 15 eagvkvreleakveelnkereelkke 40 (347)
T PF06673_consen 15 EAGVKVRELEAKVEELNKEREELKKE 40 (347)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHh
Confidence 33345789999999999999999774
No 115
>smart00338 BRLZ basic region leucin zipper.
Probab=49.21 E-value=30 Score=21.63 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 032643 12 CCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
-.||.+|+.+++.|...-++|..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~ 47 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKK 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999988877754
No 116
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=48.81 E-value=41 Score=20.59 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=20.0
Q ss_pred CcccHHHHHHHHHHcCceEEEeE
Q 032643 77 RNFMLYEVISILEEEGAQVVSAS 99 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~ 99 (136)
.+..+.+++.+|.+.|+.|...+
T Consensus 14 ~~gi~~~if~aL~~~~I~v~~~~ 36 (64)
T cd04937 14 VPGVMAKIVGALSKEGIEILQTA 36 (64)
T ss_pred CcCHHHHHHHHHHHCCCCEEEEE
Confidence 78889999999999999997443
No 117
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.41 E-value=74 Score=20.64 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=31.6
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEE-eCCeEEEEEEEEeec
Q 032643 73 SGVQRNFMLYEVISILEEEGAQVVSASFST-IGDKIFHTVRAQAKI 117 (136)
Q Consensus 73 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~-~~~r~fhtI~~qv~~ 117 (136)
+-.++++.|+++|.+|++.|+.+..=-|-- -+..-=|.+.-++..
T Consensus 6 ~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~ 51 (74)
T cd04929 6 SLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCEC 51 (74)
T ss_pred EcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 334578999999999999999998777632 233333666666654
No 118
>PRK14637 hypothetical protein; Provisional
Probab=47.92 E-value=1.1e+02 Score=22.85 Aligned_cols=54 Identities=13% Similarity=0.056 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCccc-chHHHHHHHhhhh
Q 032643 81 LYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGV-ETSIACQRLHDLV 135 (136)
Q Consensus 81 Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~-d~~~l~erL~~~i 135 (136)
..-+-.++++.|+++++..+..-++.-+-.|.---.++ +++ ||+.+++.+-..+
T Consensus 11 ~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~g-V~iddC~~vSr~Is~~L 65 (151)
T PRK14637 11 FSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGG-VGLDDCARVHRILVPRL 65 (151)
T ss_pred HHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHh
Confidence 34455678888999999999988776555555543332 333 6888888765544
No 119
>PRK14647 hypothetical protein; Provisional
Probab=47.82 E-value=1e+02 Score=23.05 Aligned_cols=51 Identities=12% Similarity=0.187 Sum_probs=34.6
Q ss_pred HHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 86 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 86 ~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
.++++.|++++...+..-++..+-.|.---..+-.-=||+++++.+..++|
T Consensus 16 ~~~~~~G~~L~dv~~~~~~~~~~lrV~ID~~~gvslddC~~vSr~is~~LD 66 (159)
T PRK14647 16 QVLSSLGLELVELEYKREGREMVLRLFIDKEGGVNLDDCAEVSRELSEILD 66 (159)
T ss_pred HHHHHCCCEEEEEEEEecCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 456677999999999988776555554432222213368889988877664
No 120
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=47.65 E-value=35 Score=22.06 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=25.2
Q ss_pred EEEEecCC--CcccH-HHHHHHHHHcCceEEEeEEE
Q 032643 69 VVLISGVQ--RNFML-YEVISILEEEGAQVVSASFS 101 (136)
Q Consensus 69 V~l~s~~~--~~~~L-s~vl~vLeEeGl~Vvsa~~s 101 (136)
|.++|+.+ ..+++ ..+-+.+++.|+++......
T Consensus 2 IlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 2 ILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 56677665 67778 88889999999877766655
No 121
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=47.44 E-value=28 Score=24.97 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 8 LDLACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 8 l~eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
++.--+||+.+|+|++.|+.--+++...
T Consensus 17 ~~~L~~Yi~~~~~kl~~l~~~~~~~~~~ 44 (134)
T PF08336_consen 17 ISNLRNYIEELQEKLDTLKRFLDEMKRE 44 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455689999999999998776666553
No 122
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=47.35 E-value=14 Score=29.01 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 032643 5 EDQLDLACCYIKQLRERIDKLN 26 (136)
Q Consensus 5 ~d~l~eA~~YIk~Lq~kve~L~ 26 (136)
=|+|-.|+.||++|++=++.-.
T Consensus 148 veTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 148 VETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred ccchHHHHHHHHHHHHHhcccc
Confidence 4789999999999998776654
No 123
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=47.13 E-value=22 Score=22.14 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 032643 14 YIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 14 YIk~Lq~kve~L~~kk~~l 32 (136)
-++.+++++++++++-+++
T Consensus 49 ~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4677777777777665543
No 124
>PRK14645 hypothetical protein; Provisional
Probab=47.11 E-value=1e+02 Score=23.00 Aligned_cols=56 Identities=25% Similarity=0.265 Sum_probs=37.4
Q ss_pred HHHH-HHHHHHcCceEEEeEEEEeCCeEEEEEEEEee-ccCccc-chHHHHHHHhhhhC
Q 032643 81 LYEV-ISILEEEGAQVVSASFSTIGDKIFHTVRAQAK-ISRLGV-ETSIACQRLHDLVD 136 (136)
Q Consensus 81 Ls~v-l~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~-~~~~~~-d~~~l~erL~~~i~ 136 (136)
+.++ =.++++.|++++...+..-++..+-.|.-.-. ...+++ ||+++++.+.+++|
T Consensus 11 i~~li~~~~~~~G~elvdve~~~~~~~~ilrV~ID~~~~~~v~lddC~~vSr~is~~LD 69 (154)
T PRK14645 11 LQQLAEGALEPLGYEVLEVQVQRSGGKRIVLVRIDRKDEQPVTVEDLERASRALEAELD 69 (154)
T ss_pred HHHHHHHHHHHcCCEEEEEEEEeCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhc
Confidence 4444 45667789999999999877655555555421 222333 68899999887764
No 125
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=46.31 E-value=30 Score=27.82 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 032643 6 DQLDLACCYIKQLRERIDKLNR 27 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~ 27 (136)
--++.|..||+.|+.+..+..+
T Consensus 98 siL~kA~~~i~~l~~~~~~~~~ 119 (232)
T KOG2483|consen 98 SILDKALEHIQSLERKSATQQQ 119 (232)
T ss_pred HhhhhHHHHHHHHHhHHHHHHH
Confidence 4578999999999866444333
No 126
>PRK14630 hypothetical protein; Provisional
Probab=44.98 E-value=1e+02 Score=22.71 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=33.7
Q ss_pred HHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCccc-chHHHHHHHhhhh
Q 032643 86 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGV-ETSIACQRLHDLV 135 (136)
Q Consensus 86 ~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~-d~~~l~erL~~~i 135 (136)
.++++.|++++...+..-++..+-.|...-.++ +++ ||+++++.+..++
T Consensus 16 ~~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g-V~idDC~~vSr~i~~~l 65 (143)
T PRK14630 16 NVTDRLGIEIIEINTFRNRNEGKIQIVLYKKDS-FGVDTLCDLHKMILLIL 65 (143)
T ss_pred HHHHHcCCEEEEEEEEecCCCcEEEEEEECCCC-CCHHHHHHHHHHHHHHh
Confidence 457788999999999877765555555543333 333 6888888886554
No 127
>PRK14634 hypothetical protein; Provisional
Probab=44.88 E-value=1e+02 Score=22.94 Aligned_cols=50 Identities=6% Similarity=0.081 Sum_probs=33.9
Q ss_pred HHHHcCceEEEeEEEEeCCeEEEEEEEEeecc-Cccc-chHHHHHHHhhhhC
Q 032643 87 ILEEEGAQVVSASFSTIGDKIFHTVRAQAKIS-RLGV-ETSIACQRLHDLVD 136 (136)
Q Consensus 87 vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~-~~~~-d~~~l~erL~~~i~ 136 (136)
++++.|++++...+..-++..+-.|...-.++ .+++ ||+++++.+-+++|
T Consensus 16 ~~~~~G~elvdve~~~~~~~~~lrV~ID~~~g~~v~lddC~~vSr~is~~LD 67 (155)
T PRK14634 16 TAADKGFELCGIQVLTHLQPMTLQVQIRRSSGSDVSLDDCAGFSGPMGEALE 67 (155)
T ss_pred HHHHcCCEEEEEEEEeCCCCcEEEEEEECCCCCcccHHHHHHHHHHHHHHhc
Confidence 46677999999999887765555555443222 1333 68889988877764
No 128
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=44.45 E-value=92 Score=21.30 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=42.0
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
.+|..|-+||++.+--|+.|..-+-|..-|.---+|..-|.+.| .+|+ |.-.|.++
T Consensus 12 ~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R-~~~l--L~~QLeKl 67 (86)
T COG3978 12 FNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDR-SVDL--LTSQLEKL 67 (86)
T ss_pred CChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCC-ChHH--HHHHHHHH
Confidence 36889999999999999999998877654555557888888777 6754 44445444
No 129
>PRK09343 prefoldin subunit beta; Provisional
Probab=44.31 E-value=51 Score=23.50 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=29.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 3 SQEDQLDLACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 3 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
-+|..+..-++....||++++.+...|..+...
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q 36 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLE 36 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999877553
No 130
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=43.69 E-value=53 Score=22.79 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=27.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 4 QEDQLDLACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 4 ~~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
+|..+.+.++..+.||++++.+..++..+...
T Consensus 1 ~~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~ 32 (110)
T TIGR02338 1 IPPQVQNQLAQLQQLQQQLQAVATQKQQVEAQ 32 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999998877553
No 131
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=43.54 E-value=56 Score=22.14 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 7 QLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
-|.-+-.=|-++|.|++.|..+|.++-.
T Consensus 9 eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 9 EIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677789999999999999876643
No 132
>PRK06382 threonine dehydratase; Provisional
Probab=43.45 E-value=72 Score=27.10 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=37.6
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEE----Ee-CCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFS----TI-GDKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s----~~-~~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
++++.|.+++.+|.++|++|++-... .. .+...-+|+.+..+. -+...|-++|++
T Consensus 339 D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~---~~~~~v~~~L~~ 398 (406)
T PRK06382 339 DRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQ---DHLDRILNALRE 398 (406)
T ss_pred CCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 58999999999999999999987654 11 234555555555421 223477777765
No 133
>PRK08198 threonine dehydratase; Provisional
Probab=42.95 E-value=1.1e+02 Score=25.77 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=39.6
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEe-----CCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTI-----GDKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-----~~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
++|+.|.+++.++-+.|++|++-+.... .+..--+|..+..+.. +...+-++|++
T Consensus 336 D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~~~---~~~~l~~~L~~ 395 (404)
T PRK08198 336 DRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRGPE---HIEEILDALRD 395 (404)
T ss_pred CCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCCHH---HHHHHHHHHHH
Confidence 5899999999999999999998887653 2455555555553321 44677777765
No 134
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=42.95 E-value=35 Score=21.56 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032643 13 CYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 13 ~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
.-|.+|++++++++++.++|..
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ 45 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKE 45 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666665544
No 135
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.79 E-value=88 Score=23.55 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=37.4
Q ss_pred HHHHHH-HHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 81 LYEVIS-ILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 81 Ls~vl~-vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
+.++++ +++..|++++...+...|...+--|...=.++-.-=||+++++.+-.++|
T Consensus 10 v~~liep~~~~lG~ELv~ve~~~~~~~~~lrI~id~~g~v~lddC~~vSr~is~~LD 66 (153)
T COG0779 10 VTELIEPVVESLGFELVDVEFVKEGRDSVLRIYIDKEGGVTLDDCADVSRAISALLD 66 (153)
T ss_pred HHHHHHHhHhhcCcEEEEEEEEEcCCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHhc
Confidence 344444 44556999999999999976555555544322113378999998877664
No 136
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=41.55 E-value=26 Score=23.62 Aligned_cols=20 Identities=35% Similarity=0.365 Sum_probs=18.0
Q ss_pred cHHHHHHHHHHcCceEEEeE
Q 032643 80 MLYEVISILEEEGAQVVSAS 99 (136)
Q Consensus 80 ~Ls~vl~vLeEeGl~Vvsa~ 99 (136)
.|+.|-+.|++.|.+|++-.
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~ 28 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLE 28 (80)
T ss_pred CchHHHHHHHHCCCEEEecC
Confidence 68999999999999999755
No 137
>PRK14632 hypothetical protein; Provisional
Probab=41.46 E-value=98 Score=23.53 Aligned_cols=50 Identities=8% Similarity=0.042 Sum_probs=32.1
Q ss_pred HHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 86 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 86 ~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
.++++.|++++...+.. +++.+-.|.-.-.++-.-=||+++++.+-.++|
T Consensus 16 pv~~~~G~eLvdve~~~-~~~~~lrV~ID~~~GV~ldDC~~vSr~is~~LD 65 (172)
T PRK14632 16 PFLASLGLELWGIELSY-GGRTVVRLFVDGPEGVTIDQCAEVSRHVGLALE 65 (172)
T ss_pred HHHHHCCCEEEEEEEEe-CCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 35677899999999885 554444444432222113368899988877654
No 138
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=41.44 E-value=42 Score=27.53 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032643 6 DQLDLACCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~kk~~l 32 (136)
...+||...=.+||.|+++|.+|+.+.
T Consensus 44 as~dEa~~L~~~L~~kl~eLqkk~~Ea 70 (277)
T PF15030_consen 44 ASRDEATRLQDELQGKLEELQKKQHEA 70 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 457899999999999999999998764
No 139
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=40.44 E-value=20 Score=28.50 Aligned_cols=26 Identities=38% Similarity=0.392 Sum_probs=22.5
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEE
Q 032643 75 VQRNFMLYEVISILEEEGAQVVSASF 100 (136)
Q Consensus 75 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~ 100 (136)
.+....|.-|+..||++|+.|+.++.
T Consensus 49 ~gDd~lL~av~~~le~~G~~vv~~~~ 74 (214)
T PF06230_consen 49 RGDDALLRAVIDELEKEGFKVVGAHE 74 (214)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEcHHH
Confidence 34678999999999999999999863
No 140
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=39.31 E-value=1.8e+02 Score=24.17 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=43.0
Q ss_pred CeeEEEEEecC-CCcccHHHHHHHHHHcCceEEEeEEEEe-----CCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 65 SSIEVVLISGV-QRNFMLYEVISILEEEGAQVVSASFSTI-----GDKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 65 ~~~eV~l~s~~-~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-----~~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
.|-.+.+.-.. ++++.|+++++.+.+.|++|++-..... .+..--+|..+..+ .-+...+-++|++
T Consensus 302 ~gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~---~~~~~~i~~~L~~ 373 (380)
T TIGR01127 302 SGRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRG---KEHLDEILKILRD 373 (380)
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCC---HHHHHHHHHHHHH
Confidence 34444443333 5899999999999999999998876632 24444555555532 2344577777765
No 141
>PRK08526 threonine dehydratase; Provisional
Probab=39.05 E-value=1.7e+02 Score=24.99 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=44.3
Q ss_pred eeEEEEEecC-CCcccHHHHHHHHHHcCceEEEeEEEEeCCe-----EEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 66 SIEVVLISGV-QRNFMLYEVISILEEEGAQVVSASFSTIGDK-----IFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 66 ~~eV~l~s~~-~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r-----~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
|-.+.+.... ++|+.|.+++..+-+.|.+|++-...+...+ ..-.+.+++.+. -+...+-++|++
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~l~~ 394 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGK---EHQEEIRKILTE 394 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCH---HHHHHHHHHHHH
Confidence 4444444344 4899999999999999999999998765444 444455665532 344666666654
No 142
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=39.04 E-value=55 Score=27.35 Aligned_cols=27 Identities=11% Similarity=0.186 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 8 LDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 8 l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
+.+.+..++.+-.+|+.|+.+|+++..
T Consensus 196 ~~~~i~~L~~ll~~l~~lk~eR~~~~~ 222 (356)
T cd09237 196 VLKQIKQLEELLEDLNLIKEERQRVLK 222 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999987655
No 143
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=38.99 E-value=2.3e+02 Score=23.63 Aligned_cols=61 Identities=11% Similarity=0.143 Sum_probs=48.6
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEEE--eCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 71 LISGVQRNFMLYEVISILEEEGAQVVSASFST--IGDKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 71 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~--~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
.+|+.+.++....|=..|.|.|+.++.+.--. .+++.|--+..+..... .+.+.+.+-|..
T Consensus 11 tvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~--~~~~~l~~~f~~ 73 (287)
T COG0788 11 TVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGP--LDREALRAAFAP 73 (287)
T ss_pred EEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCc--ccHHHHHHHHHH
Confidence 45666789999999999999999999998542 46789988888887654 667777777665
No 144
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.43 E-value=95 Score=19.05 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=21.5
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeC
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIG 104 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~ 104 (136)
.+..+.+++.+|.+.|+.|.--+.+.-+
T Consensus 13 ~~~~~~~i~~aL~~~~I~v~~i~~g~s~ 40 (65)
T cd04918 13 SSLILERAFHVLYTKGVNVQMISQGASK 40 (65)
T ss_pred CccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 5678999999999999999555543333
No 145
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=37.97 E-value=98 Score=20.27 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=21.6
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeCC--eEEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIGD--KIFHTV 111 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~--r~fhtI 111 (136)
..+-|+.-|..||++|+- +..-...+. +.+|.|
T Consensus 27 t~g~Ls~hL~~Le~~GyV--~~~k~~~~~~p~t~~~l 61 (80)
T PF13601_consen 27 TDGNLSKHLKKLEEAGYV--EVEKEFEGRRPRTWYSL 61 (80)
T ss_dssp -HHHHHHHHHHHHHTTSE--EEEEE-SSS--EEEEEE
T ss_pred CHHHHHHHHHHHHHCCCE--EEEEeccCCCCeEEEEE
Confidence 467899999999999983 334444444 555544
No 146
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=37.95 E-value=76 Score=19.32 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 032643 9 DLACCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 9 ~eA~~YIk~Lq~kve~L~~kk~~l 32 (136)
.-....++++.+++++|.+-++.|
T Consensus 39 ~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 39 ALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666666555544
No 147
>cd09238 V_Alix_like_1 Protein-interacting V-domain of an uncharacterized family of the V_Alix_like superfamily. This domain family is comprised of uncharacterized plant proteins. It belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), (His-Domain) type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Alix, HD-PTP, Bro1, a
Probab=37.92 E-value=56 Score=27.24 Aligned_cols=32 Identities=9% Similarity=0.102 Sum_probs=26.5
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 3 SQEDQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 3 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
++++....++.+++.+-++|+.|+.+|..+..
T Consensus 185 ~l~~~~~~~v~~Lr~~l~~l~~lk~eR~~l~~ 216 (339)
T cd09238 185 STDEDDASIVGTLRSNLEELEALGNERAGIED 216 (339)
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566788999999999999999999976543
No 148
>PHA01750 hypothetical protein
Probab=37.56 E-value=46 Score=21.94 Aligned_cols=12 Identities=17% Similarity=0.592 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 032643 17 QLRERIDKLNRM 28 (136)
Q Consensus 17 ~Lq~kve~L~~k 28 (136)
+|+++|+++++|
T Consensus 60 nl~~qv~eik~k 71 (75)
T PHA01750 60 ELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHHHh
Confidence 344444444433
No 149
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=37.00 E-value=52 Score=27.26 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=23.7
Q ss_pred eEEEEEecCCCcccHHHHHHHHHHcCceEEE
Q 032643 67 IEVVLISGVQRNFMLYEVISILEEEGAQVVS 97 (136)
Q Consensus 67 ~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvs 97 (136)
++++++||+. +.==|..|++||..|...|+
T Consensus 1 m~~vIiTGlS-GaGKs~Al~~lED~Gy~cvD 30 (284)
T PF03668_consen 1 MELVIITGLS-GAGKSTALRALEDLGYYCVD 30 (284)
T ss_pred CeEEEEeCCC-cCCHHHHHHHHHhcCeeEEc
Confidence 3678889886 34458999999999987775
No 150
>PF02576 DUF150: Uncharacterised BCR, YhbC family COG0779; InterPro: IPR003728 The RimP protein facilitates maturation of the 30S ribsomal subunit, and is required for the efficient production of translationally competent ribosmomes [].; PDB: 1IB8_A.
Probab=36.84 E-value=1.6e+02 Score=21.17 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=31.6
Q ss_pred HHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCccc-chHHHHHHHhhhhC
Q 032643 86 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGV-ETSIACQRLHDLVD 136 (136)
Q Consensus 86 ~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~-d~~~l~erL~~~i~ 136 (136)
.++++.|++++...+..-++..+-.|-..-..+ +++ ||+.+++.+...++
T Consensus 4 ~~~~~~g~~l~~v~~~~~~~~~~l~V~id~~~g-v~lddc~~~sr~i~~~LD 54 (141)
T PF02576_consen 4 PLLEELGLELVDVEVVKEGGNRILRVFIDKDGG-VSLDDCEKVSRAISALLD 54 (141)
T ss_dssp HHH-S-SSEEEEEEEEEETTEEEEEEEEE-SS----HHHHHHHHHHHGGGTT
T ss_pred cchhhcCCEEEEEEEEECCCCEEEEEEEEeCCC-CCHHHHHHHHHHHHHHHc
Confidence 356777999999999988876554444443333 433 57888888877654
No 151
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.25 E-value=1.2e+02 Score=19.69 Aligned_cols=54 Identities=7% Similarity=0.036 Sum_probs=33.7
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEeC-CeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTIG-DKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
++|+.|.+++.+|- |.+|.+..+...+ +..--.+-.++.++ --+...+.++|++
T Consensus 10 D~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~--~~~~~~i~~~L~~ 64 (85)
T cd04906 10 ERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANG--AEELAELLEDLKS 64 (85)
T ss_pred CCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCc--HHHHHHHHHHHHH
Confidence 58999999999999 7788887776543 33223333344331 1234566666654
No 152
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=36.17 E-value=48 Score=28.03 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=28.8
Q ss_pred CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEE
Q 032643 65 SSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIF 108 (136)
Q Consensus 65 ~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~f 108 (136)
++.-| +++|...+.+..++++.+|+.|+.|| |--.|.|.|.|
T Consensus 232 ~~~RI-l~tG~~~~~~~~k~~~~iE~~G~~VV-~dd~c~g~r~~ 273 (380)
T TIGR02263 232 DNCRV-IICGMFCEQPPLNLIKSIELSGCYIV-DDDFIIVHRFE 273 (380)
T ss_pred CCCEE-EEECcCCCCchHHHHHHHHHCCCEEE-EecCCccchhh
Confidence 55666 44675445556899999999999999 33345565554
No 153
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=35.88 E-value=87 Score=21.00 Aligned_cols=27 Identities=22% Similarity=0.144 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 8 LDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 8 l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
|++-.+...+|++++++|+...+++.+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567778889999999977766655544
No 154
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=35.59 E-value=55 Score=22.00 Aligned_cols=31 Identities=29% Similarity=0.478 Sum_probs=17.3
Q ss_pred CChhhhHHHH-----HHHHHHHHHHHHHHHHHHHHh
Q 032643 2 LSQEDQLDLA-----CCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 2 ~s~~d~l~eA-----~~YIk~Lq~kve~L~~kk~~l 32 (136)
+-+|++++.| -..+.+|++.|+.|++=|.++
T Consensus 41 ~DmPe~l~~~~~~QideeV~~LKe~IdaLNK~KkE~ 76 (79)
T PF10398_consen 41 QDMPEHLNMAFLAQIDEEVEKLKEHIDALNKIKKEL 76 (79)
T ss_dssp S---TTS-HHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467776654 245677778888887755444
No 155
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=35.48 E-value=2.1e+02 Score=22.09 Aligned_cols=96 Identities=11% Similarity=0.213 Sum_probs=58.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCc--cc--cccCCCCCCCeEEEEEcCCeeEEEEEecCCCcc
Q 032643 4 QEDQLDLACCYIKQLRERIDKLNRMKGQAMKSIKPNSSNNI--LD--ETNNICSNLPVVELRDLGSSIEVVLISGVQRNF 79 (136)
Q Consensus 4 ~~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~~~~~~~~~~~--~~--~~~~~~~~~p~V~V~~~~~~~eV~l~s~~~~~~ 79 (136)
..+..++|-+.+...++-+.-++++.+++.....+....+. ++ +.+..........+++-|+.+.|-+ + +.
T Consensus 60 l~~~~~~a~~~l~~~~qll~wvq~~a~~i~~l~~~~~~~~~sL~~~V~~SA~~~gL~i~R~QP~Ge~vQVwl----d-~v 134 (178)
T PRK09731 60 LSERIEQQETMLQQLVAMNTRLKSAAPDIIAARKSATTTPAQVSRVISDSASAHSVVIKRIAERGENIQVWI----E-PV 134 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHCCCeEEEecCCCCEEEEEE----C-CC
Confidence 34567888888888888888888888877665432211000 00 0011122334555677777777765 2 45
Q ss_pred cHHHH---HHHHHH-cCceEEEeEEEEeC
Q 032643 80 MLYEV---ISILEE-EGAQVVSASFSTIG 104 (136)
Q Consensus 80 ~Ls~v---l~vLeE-eGl~Vvsa~~s~~~ 104 (136)
||..+ |..|++ +|+.|.+...+..+
T Consensus 135 ~F~~ll~WL~~L~~q~GV~V~~ldl~~~~ 163 (178)
T PRK09731 135 VFNDLLNWLNALDEKYALRVTQIDVSAAE 163 (178)
T ss_pred CHHHHHHHHHHHHHhcCceEEEEeeecCC
Confidence 66655 456654 49999999988644
No 156
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.43 E-value=63 Score=19.89 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=21.1
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFS 101 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s 101 (136)
.+..+.+++++|.+.|+.+++...|
T Consensus 13 ~~gv~~~~~~~L~~~~i~~i~~~~s 37 (63)
T cd04920 13 LLHKLGPALEVFGKKPVHLVSQAAN 37 (63)
T ss_pred CccHHHHHHHHHhcCCceEEEEeCC
Confidence 6778999999999999888776654
No 157
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=35.05 E-value=99 Score=18.27 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=19.9
Q ss_pred CcccHHHHHHHHHHcCceEEEeEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASF 100 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~ 100 (136)
.+..+.+++++|.++|+.|.--+.
T Consensus 14 ~~~~~~~i~~~l~~~~I~v~~i~~ 37 (66)
T cd04922 14 TPGVAATFFSALAKANVNIRAIAQ 37 (66)
T ss_pred CccHHHHHHHHHHHCCCCEEEEEe
Confidence 667799999999999999955543
No 158
>PRK14633 hypothetical protein; Provisional
Probab=34.83 E-value=1.9e+02 Score=21.41 Aligned_cols=50 Identities=10% Similarity=0.090 Sum_probs=32.3
Q ss_pred HHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcc-cchHHHHHHHhhhhC
Q 032643 85 ISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLG-VETSIACQRLHDLVD 136 (136)
Q Consensus 85 l~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~-~d~~~l~erL~~~i~ 136 (136)
-.++++.|++++.-.+..-+++ +-.|.-.-.++ ++ =||+.+++.+-.++|
T Consensus 11 ~p~~~~~G~eL~dve~~~~~~~-~lrV~ID~~~G-v~lddC~~vSr~i~~~LD 61 (150)
T PRK14633 11 EPITADLGYILWGIEVVGSGKL-TIRIFIDHENG-VSVDDCQIVSKEISAVFD 61 (150)
T ss_pred HHHHHHCCCEEEEEEEEeCCCc-EEEEEEeCCCC-CCHHHHHHHHHHHHHHhc
Confidence 3467888999999999876653 33333322222 33 368888888876654
No 159
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=33.14 E-value=99 Score=22.36 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 10 LACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 10 eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
-..+.+.++++++++|+..|+.|...
T Consensus 83 ~l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (135)
T PRK10227 83 RTLEKVAEIERHIEELQSMRDQLLAL 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999887654
No 160
>PRK14641 hypothetical protein; Provisional
Probab=32.97 E-value=1.8e+02 Score=22.27 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=31.5
Q ss_pred HcCceEEEeEEEEeCCeEEEEEEEEeeccCccc-chHHHHHHHhhhhC
Q 032643 90 EEGAQVVSASFSTIGDKIFHTVRAQAKISRLGV-ETSIACQRLHDLVD 136 (136)
Q Consensus 90 EeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~-d~~~l~erL~~~i~ 136 (136)
+.|++++...+..-++.-+=.|...-. ..+++ ||+++++.+-+++|
T Consensus 21 ~~G~eLvdve~~~~~~~~~lrV~ID~~-~gv~lDdC~~vSr~Is~~LD 67 (173)
T PRK14641 21 GEGVYLVSMTVKGSGKGRKIEVLLDAD-TGIRIDQCAFFSRRIRERLE 67 (173)
T ss_pred cCCeEEEEEEEEeCCCCcEEEEEEeCC-CCCCHHHHHHHHHHHHHHhC
Confidence 779999999998877655445554422 22444 58888888877654
No 161
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=32.48 E-value=86 Score=24.41 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 032643 6 DQLDLACCYIKQLRERIDKLNRMKGQAMKSI 36 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~kk~~l~~~~ 36 (136)
.++.+.-.-|..|+.++++++.||+.|+...
T Consensus 113 ~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~ 143 (219)
T TIGR02977 113 ETLAKLQEDIAKLQAKLAEARARQKALAIRH 143 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777778888888888877665543
No 162
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=32.42 E-value=51 Score=21.77 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=44.6
Q ss_pred ecCC-CcccHHHHHHHHHHcCceEEEeEEEEeCCe---------EEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 73 SGVQ-RNFMLYEVISILEEEGAQVVSASFSTIGDK---------IFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 73 s~~~-~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r---------~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
-|.+ ....+++|=++|-+.|+++.+-+- ..++ --+.+.+.+..+. .|.+.+...|.++
T Consensus 5 lg~~~~a~~ia~Vs~~lA~~~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~~~~--~~~~~lr~~L~~l 72 (84)
T cd04871 5 LGRPLTAEQLAAVTRVVADQGLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVRGQP--ADLEALRAALLEL 72 (84)
T ss_pred EcCcCCHHHHHHHHHHHHHcCCCHHHHHH--hhccccccccCCCCcEEEEEEEeCCC--CCHHHHHHHHHHH
Confidence 4666 778999999999999998876554 2222 3679999998654 6889999998865
No 163
>PRK06835 DNA replication protein DnaC; Validated
Probab=32.09 E-value=57 Score=27.25 Aligned_cols=25 Identities=28% Similarity=0.307 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Q 032643 12 CCYIKQLRERIDKLNRMKGQAMKSI 36 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~~l~~~~ 36 (136)
-..+++|++++++|+++|.+|+...
T Consensus 64 ~~~~~~l~~~~~~l~~~~~~lL~~~ 88 (329)
T PRK06835 64 EETLKELKEKITDLRVKKAELLVSN 88 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5678999999999999999887754
No 164
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=32.06 E-value=50 Score=21.59 Aligned_cols=19 Identities=42% Similarity=0.595 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 032643 14 YIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 14 YIk~Lq~kve~L~~kk~~l 32 (136)
=|+.|+++|++|+.+=-++
T Consensus 3 d~~eLk~evkKL~~~A~~~ 21 (66)
T PF05082_consen 3 DIEELKKEVKKLNRKATQA 21 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3789999999998764443
No 165
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=31.54 E-value=1.2e+02 Score=23.49 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=30.2
Q ss_pred EEEEEcCCeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEE
Q 032643 58 VELRDLGSSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFS 101 (136)
Q Consensus 58 V~V~~~~~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s 101 (136)
..|--+++|+.... ..++.-+-|+.|++.|.+|..|-.+
T Consensus 122 ~~Ifl~n~gV~l~~-----~~~~~~e~Lk~L~~~Gv~I~~CGtC 160 (194)
T TIGR03527 122 KRILFVNGGVKLTT-----EGSEVLEDLKELEKKGVEILSCGTC 160 (194)
T ss_pred eEEEEEccceeecc-----CCchHHHHHHHHHHCCCEEEEeHHH
Confidence 66666667666543 3567888999999999999999875
No 166
>PRK14643 hypothetical protein; Provisional
Probab=31.48 E-value=2.3e+02 Score=21.38 Aligned_cols=51 Identities=12% Similarity=-0.042 Sum_probs=35.3
Q ss_pred HHHHHcCceEEEeEEEEeCCeEEEEEEEEe---eccCccc-chHHHHHHHhhhhC
Q 032643 86 SILEEEGAQVVSASFSTIGDKIFHTVRAQA---KISRLGV-ETSIACQRLHDLVD 136 (136)
Q Consensus 86 ~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv---~~~~~~~-d~~~l~erL~~~i~ 136 (136)
.++++.|++++...+..-+++.+-.|.-.- .+..+++ ||+.+++.+-+++|
T Consensus 17 p~~~~~G~eL~die~~~~~~~~~lrV~Id~~~~~~ggvtldDC~~vSr~is~~LD 71 (164)
T PRK14643 17 KELEVLNLKVYEINNLKEFENDMIQILVEDILQANKPLDFDILIKANDLVSNKID 71 (164)
T ss_pred HHHHhcCCEEEEEEEEecCCCcEEEEEEecCCCcCCCcCHHHHHHHHHHHHHHhC
Confidence 346677999999999988876666666531 1122333 78888888877764
No 167
>PF14282 FlxA: FlxA-like protein
Probab=31.33 E-value=71 Score=22.23 Aligned_cols=23 Identities=22% Similarity=0.275 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 032643 12 CCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
...|+.|+++|+.|.++-.+|..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666777777776666555543
No 168
>PHA03338 US22 family homolog; Provisional
Probab=30.83 E-value=28 Score=29.29 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=29.9
Q ss_pred eEEEeE---EEEeCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 94 QVVSAS---FSTIGDKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 94 ~Vvsa~---~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
..+.++ |..+|=|.||+|||.+.-...||=..|++-.+++
T Consensus 141 Y~vA~s~eeFa~vGlR~vypihC~agl~esgill~R~w~~ir~ 183 (344)
T PHA03338 141 YLLAASAEDFAAIGFRFFYPIHCRAGLGEIGILLGRLWLLIRQ 183 (344)
T ss_pred EEeccCHHHHHhhcceeEEEeccccccchhHHHHHHHHHHHHh
Confidence 344444 3567889999999999877777877887777664
No 169
>PRK03094 hypothetical protein; Provisional
Probab=30.76 E-value=53 Score=22.23 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHcCceEEEeEEE-----------EeCCeEEEEEE-----EEeeccCcccchHHHHHHHhh
Q 032643 80 MLYEVISILEEEGAQVVSASFS-----------TIGDKIFHTVR-----AQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 80 ~Ls~vl~vLeEeGl~Vvsa~~s-----------~~~~r~fhtI~-----~qv~~~~~~~d~~~l~erL~~ 133 (136)
-|+.|=+.|++.|.+|++-..- +=.|+-|--|+ +-|-+ +-|.-+++++++|++
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~~~~~~~~~Da~VitG~d~n~mgi~d~~t~~pVI~-A~G~TaeEI~~~ve~ 77 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLRSEQDAQGCDCCVVTGQDSNVMGIADTSTKGSVIT-ASGLTADEICQQVES 77 (80)
T ss_pred CcHHHHHHHHHCCCEEEecCcccccCCcCEEEEeCCCcceecccccccCCcEEE-cCCCCHHHHHHHHHH
Confidence 5889999999999999755431 11123332233 12222 237777888888764
No 170
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=30.72 E-value=57 Score=18.74 Aligned_cols=13 Identities=31% Similarity=0.721 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 032643 13 CYIKQLRERIDKL 25 (136)
Q Consensus 13 ~YIk~Lq~kve~L 25 (136)
.|++.|..|+++|
T Consensus 23 ~YV~~L~~rl~el 35 (35)
T PF12180_consen 23 AYVRGLLARLKEL 35 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 5999999998876
No 171
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=30.62 E-value=5.3e+02 Score=25.33 Aligned_cols=79 Identities=10% Similarity=0.011 Sum_probs=58.7
Q ss_pred CCCeEEEEEcC-CeeEEEEEecC---C-CcccHHHHHHHHHHcCceEEEeEEEEe-CCeEEEEEEEEeeccCcccchHHH
Q 032643 54 NLPVVELRDLG-SSIEVVLISGV---Q-RNFMLYEVISILEEEGAQVVSASFSTI-GDKIFHTVRAQAKISRLGVETSIA 127 (136)
Q Consensus 54 ~~p~V~V~~~~-~~~eV~l~s~~---~-~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~~r~fhtI~~qv~~~~~~~d~~~l 127 (136)
..|.+.+.+.. ++-++.+.-++ + ....|+.+-+++.-+|+.+..+-.-.+ |+-..|++..+-.....-+ -..+
T Consensus 215 ~g~~i~~~~~~~~~~~~r~~~a~~r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~~~~~-~~~~ 293 (1002)
T PTZ00324 215 VGPVLHVNEVPRGGVSFTMAMAFRRRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTADDNP-DLSI 293 (1002)
T ss_pred CCCeEEEEecCCCCcEEEEEEEEecCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCCCCcc-cccH
Confidence 45999999888 55776766644 1 556799999999999999999988654 7778888888876543223 3567
Q ss_pred HHHHhh
Q 032643 128 CQRLHD 133 (136)
Q Consensus 128 ~erL~~ 133 (136)
++|+++
T Consensus 294 ~~~~~~ 299 (1002)
T PTZ00324 294 EDRASL 299 (1002)
T ss_pred HHHHHh
Confidence 888876
No 172
>PTZ00376 aspartate aminotransferase; Provisional
Probab=30.00 E-value=3.2e+02 Score=22.70 Aligned_cols=23 Identities=13% Similarity=0.416 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Q 032643 14 YIKQLRERIDKLNRMKGQAMKSI 36 (136)
Q Consensus 14 YIk~Lq~kve~L~~kk~~l~~~~ 36 (136)
|++++++..+++.++|+.+...-
T Consensus 312 ~~~~~~~~~~~~~~~r~~l~~~L 334 (404)
T PTZ00376 312 WLSELKEMSGRIQNMRQLLYDEL 334 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777778888888776543
No 173
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=30.00 E-value=83 Score=19.55 Aligned_cols=21 Identities=10% Similarity=0.332 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 032643 6 DQLDLACCYIKQLRERIDKLN 26 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~ 26 (136)
-.+.||+.+++.++.++..|.
T Consensus 31 ~p~~EA~~f~~~ie~qL~~Lt 51 (52)
T PF03791_consen 31 RPFQEAMEFCREIEQQLSSLT 51 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356788888888888887763
No 174
>PRK00092 ribosome maturation protein RimP; Reviewed
Probab=29.96 E-value=2.2e+02 Score=20.85 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=32.6
Q ss_pred HHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 86 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 86 ~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
.++++.|+++++..+..-++.-.-.|...-.++-.-=||+++++.+...+|
T Consensus 15 ~~~~~~g~~l~dv~~~~~~~~~~l~V~Id~~~gv~iddc~~~Sr~is~~LD 65 (154)
T PRK00092 15 PVVEALGYELVDVEYVKEGRDSTLRIYIDKEGGIDLDDCEEVSRQISAVLD 65 (154)
T ss_pred HHHHHCCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 455667999999999876655444554443333223357888888776653
No 175
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=29.74 E-value=1.1e+02 Score=21.98 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 7 QLDLACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
++.||=.-++.|+..++++.+.|.++...
T Consensus 4 Tl~EA~~lLP~l~~~~~~~~~~~~~~~~~ 32 (120)
T PF09969_consen 4 TLEEANALLPLLRPILEEIRELKAELEEL 32 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999988877654
No 176
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=29.68 E-value=84 Score=18.75 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=19.5
Q ss_pred CCcccHHHHHHHHHHcCceEEEe
Q 032643 76 QRNFMLYEVISILEEEGAQVVSA 98 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa 98 (136)
+.+..+.+++++|.+.|+.+---
T Consensus 11 ~~~g~~~~i~~~L~~~~I~i~~i 33 (75)
T cd04913 11 DKPGVAAKIFGALAEANINVDMI 33 (75)
T ss_pred CCCcHHHHHHHHHHHcCCeEEEE
Confidence 46788999999999999999533
No 177
>PHA02114 hypothetical protein
Probab=29.68 E-value=78 Score=22.68 Aligned_cols=21 Identities=43% Similarity=0.422 Sum_probs=18.9
Q ss_pred CcccHHHHHHHHHHcCceEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVS 97 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvs 97 (136)
...|.-.|+.-|||.|++||-
T Consensus 94 sr~pwi~v~s~le~~g~~vva 114 (127)
T PHA02114 94 SRAPWIKVISRLEEAGFNVVA 114 (127)
T ss_pred ccCcHHHHHHHHHhcCceeee
Confidence 567999999999999999985
No 178
>PHA02047 phage lambda Rz1-like protein
Probab=29.68 E-value=1.1e+02 Score=21.53 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 032643 5 EDQLDLACCYIKQLRERIDKLNRMK 29 (136)
Q Consensus 5 ~d~l~eA~~YIk~Lq~kve~L~~kk 29 (136)
-.+++.|=.-|..+|+.|++|++|.
T Consensus 40 a~qLE~a~~r~~~~Q~~V~~l~~ka 64 (101)
T PHA02047 40 TARLEALEVRYATLQRHVQAVEART 64 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777788999999999998865
No 179
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=29.65 E-value=91 Score=25.72 Aligned_cols=32 Identities=6% Similarity=0.247 Sum_probs=26.6
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 3 SQEDQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 3 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
+.++.+.+++..++.+-.+|+.|+++|+.+..
T Consensus 183 ~~~~~~~~~v~~Lr~~l~~l~~lk~eR~~~~~ 214 (342)
T cd08915 183 ALDPEVSEVVSSLRPLLNEVSELEKERERFIS 214 (342)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556778999999999999999999987654
No 180
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=29.54 E-value=1.7e+02 Score=19.84 Aligned_cols=59 Identities=8% Similarity=0.068 Sum_probs=43.1
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEee-ccCcccchHHHHHHHhhhhC
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAK-ISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~-~~~~~~d~~~l~erL~~~i~ 136 (136)
++++-|++|-..|-.-|+.+-+-+.+...+.-++-|-.-+. ... --...+...|+++++
T Consensus 11 N~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~--~~ieqI~kQL~Klid 70 (84)
T PRK13562 11 DQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD--TSLHILIKKLKQQIN 70 (84)
T ss_pred CCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH--HHHHHHHHHHhCCcc
Confidence 58999999999999999999998888766666665555553 222 223667777777764
No 181
>PRK11898 prephenate dehydratase; Provisional
Probab=29.53 E-value=2.6e+02 Score=22.69 Aligned_cols=41 Identities=10% Similarity=-0.027 Sum_probs=30.3
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeCCeE-EEEEEEEeec
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIGDKI-FHTVRAQAKI 117 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~-fhtI~~qv~~ 117 (136)
+++.|+++|.+|.+.|+++..=-|-=..++. =|.+...+..
T Consensus 207 ~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg 248 (283)
T PRK11898 207 LPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEG 248 (283)
T ss_pred CccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEc
Confidence 4899999999999999999887775333322 2666667654
No 182
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=29.34 E-value=41 Score=29.99 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 032643 14 YIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 14 YIk~Lq~kve~L~~kk~~l~~ 34 (136)
=|.+|+++|++|+++.+++..
T Consensus 32 kie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 577888888888777655433
No 183
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=28.93 E-value=1.4e+02 Score=18.11 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 032643 9 DLACCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 9 ~eA~~YIk~Lq~kve~L~~kk~~l 32 (136)
+.+..||..|.+|++.+.+|=+.|
T Consensus 19 ~~v~~~lq~Lt~kL~~vs~RLe~L 42 (47)
T PF10393_consen 19 NKVTSALQSLTQKLDAVSKRLEAL 42 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778999999999998775544
No 184
>PRK14631 hypothetical protein; Provisional
Probab=28.86 E-value=2.4e+02 Score=21.50 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=33.8
Q ss_pred HHHHHcCceEEEeEEEEeCCeEEEEEEEEee-----------------ccCcc-cchHHHHHHHhhhhC
Q 032643 86 SILEEEGAQVVSASFSTIGDKIFHTVRAQAK-----------------ISRLG-VETSIACQRLHDLVD 136 (136)
Q Consensus 86 ~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~-----------------~~~~~-~d~~~l~erL~~~i~ 136 (136)
-++++.|++++...+..-+++.+-.|.-.-. +..++ =||+++++.+-.++|
T Consensus 16 p~~~~~G~eLvdve~~~~~~~~~LrV~ID~~~~~~~~~~~~~~~~~~~~~gvtiddC~~vSr~is~~LD 84 (174)
T PRK14631 16 PAVAACGVDLWGIEFLPQGKRSLLRIYIDRLVEENAEPVINEDGEVEQGRGIGVEDCVRVTQQVGAMLD 84 (174)
T ss_pred HHHHHcCCEEEEEEEEeCCCceEEEEEEecCcccccccccccccccccCCCcCHHHHHHHHHHHHHHhc
Confidence 3566779999999998876654444444321 11233 368999999887764
No 185
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=28.78 E-value=1.5e+02 Score=19.13 Aligned_cols=30 Identities=17% Similarity=0.408 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 6 DQLDLACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
+.++++-..|..++.++++|...-.+.+..
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~ 36 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSS 36 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 567888889999999999998876655543
No 186
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=28.77 E-value=1.2e+02 Score=24.94 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHc-------CceEEEeEEEEeCCeEEEEEEE
Q 032643 79 FMLYEVISILEEE-------GAQVVSASFSTIGDKIFHTVRA 113 (136)
Q Consensus 79 ~~Ls~vl~vLeEe-------Gl~Vvsa~~s~~~~r~fhtI~~ 113 (136)
++..+|+..|-.+ ..++++|+....+++.||.+=.
T Consensus 174 GspeeVi~~l~~~v~g~~~~e~eLl~a~~re~dGktYY~~E~ 215 (262)
T PLN00066 174 GPPEKVISGFGPELIGEPVEEGKVLSMEVAEHSGRTYYQFEL 215 (262)
T ss_pred CCHHHHHHHHHHHhcCCCccccceeEeeeeecCCcEEEEEEE
Confidence 3457788888754 4689999988899999998754
No 187
>PRK10698 phage shock protein PspA; Provisional
Probab=28.30 E-value=1.1e+02 Score=24.07 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 032643 6 DQLDLACCYIKQLRERIDKLNRMKGQAMKSI 36 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~kk~~l~~~~ 36 (136)
.++.+--.-+..|+.+|++++.||+.|+...
T Consensus 113 ~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~ 143 (222)
T PRK10698 113 ETLARMKKEIGELENKLSETRARQQALMLRH 143 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556678888888999998998887754
No 188
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.30 E-value=1.3e+02 Score=20.63 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 032643 9 DLACCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 9 ~eA~~YIk~Lq~kve~L~~kk~~l 32 (136)
.-..+-+.+|++++++|+..++.|
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l 105 (113)
T cd01109 82 ELLEEHREELEEQIAELQETLAYL 105 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554444
No 189
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=28.22 E-value=1.1e+02 Score=23.43 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 032643 6 DQLDLACCYIKQLRERIDKLNRMKGQAMKSI 36 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~kk~~l~~~~ 36 (136)
.++...-.-|..|+.|+++++.||+.|+...
T Consensus 112 ~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 112 AQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555567777788888888888776643
No 190
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=27.87 E-value=63 Score=26.68 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 032643 8 LDLACCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 8 l~eA~~YIk~Lq~kve~L~~kk~~l 32 (136)
|--|+.||..||.=+.++.+.+.-+
T Consensus 158 LRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 158 LRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhh
Confidence 5679999999999999998876654
No 191
>PLN02397 aspartate transaminase
Probab=27.64 E-value=3.5e+02 Score=22.82 Aligned_cols=90 Identities=12% Similarity=0.102 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccCCCCCCCeEEEEEcCCeeEEEEEecCCCcccHHHHHHHHHHcCc
Q 032643 14 YIKQLRERIDKLNRMKGQAMKSIKPNSSNNILDETNNICSNLPVVELRDLGSSIEVVLISGVQRNFMLYEVISILEEEGA 93 (136)
Q Consensus 14 YIk~Lq~kve~L~~kk~~l~~~~~~~~~~~~~~~~~~~~~~~p~V~V~~~~~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl 93 (136)
|++++++..+.+.++|+.+...-+.- +.. ..+.+..-.+|+=+.+ ..+ -.-+-..++|+|+
T Consensus 330 ~~~~~~~~~~~~~~rr~~l~~~L~~~------------~~~-~~~~~~~p~gg~fl~~--~l~----~~~~~~Ll~~~~V 390 (423)
T PLN02397 330 WTKELKGMADRIISMRQKLYDALEAR------------GSP-GDWSHITKQIGMFSFT--GLN----KEQVDRMTKEYHI 390 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc------------CCC-CCCCcccCCceEEEec--CCC----HHHHHHHHHhCCE
Confidence 45557777888888888776543210 000 0111112234444433 111 1223344577799
Q ss_pred eEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhh
Q 032643 94 QVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLV 135 (136)
Q Consensus 94 ~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i 135 (136)
-|+ -++|+-.+ -+.. =+..++.+|+++.|
T Consensus 391 ~v~------~~~Ri~~~---~~~~----~~i~~~~~~i~~~~ 419 (423)
T PLN02397 391 YMT------RDGRISMA---GLSS----KNVPYLADAIHAVV 419 (423)
T ss_pred EEC------CCCeEEEe---eCCH----HHHHHHHHHHHHHH
Confidence 886 34455542 2221 23578888888776
No 192
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=26.88 E-value=53 Score=20.06 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=14.8
Q ss_pred cHHHHHHHHHHcCceEEEeE
Q 032643 80 MLYEVISILEEEGAQVVSAS 99 (136)
Q Consensus 80 ~Ls~vl~vLeEeGl~Vvsa~ 99 (136)
...++|+.|.++|.+.|++.
T Consensus 13 ~Y~r~L~~l~~~G~~~vSS~ 32 (50)
T PF06971_consen 13 LYLRYLEQLKEEGVERVSSQ 32 (50)
T ss_dssp HHHHHHHHHHHTT-SEE-HH
T ss_pred HHHHHHHHHHHcCCeeECHH
Confidence 35789999999999988763
No 193
>COG1695 Predicted transcriptional regulators [Transcription]
Probab=26.71 E-value=1.4e+02 Score=20.95 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=24.3
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeCC---eEEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIGD---KIFHTV 111 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~---r~fhtI 111 (136)
.++.++-+|.-|+++|+-. +..-..++ |.+|++
T Consensus 43 s~gtiYp~L~~Le~~Gli~--~~~~~~~~g~~rk~Y~l 78 (138)
T COG1695 43 SPGTIYPLLKRLEKEGLIE--SRWEESGGGPPRKYYRL 78 (138)
T ss_pred CCCcHHHHHHHHHHCCCeE--EEecccCCCCCceEEEE
Confidence 5788999999999999844 33333444 788876
No 194
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.51 E-value=62 Score=21.98 Aligned_cols=28 Identities=18% Similarity=0.367 Sum_probs=21.8
Q ss_pred EEEEEecCC--CcccHHHHHHHHHHcCceE
Q 032643 68 EVVLISGVQ--RNFMLYEVISILEEEGAQV 95 (136)
Q Consensus 68 eV~l~s~~~--~~~~Ls~vl~vLeEeGl~V 95 (136)
.|.++|+.+ ..++..++-+.++|+|+++
T Consensus 5 ~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~ 34 (95)
T TIGR00853 5 NILLLCAAGMSTSLLVNKMNKAAEEYGVPV 34 (95)
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCcE
Confidence 566777765 5577889999999999864
No 195
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=26.34 E-value=67 Score=22.26 Aligned_cols=28 Identities=11% Similarity=0.196 Sum_probs=21.1
Q ss_pred EEEEEecCC--CcccHHHHHHHHHHcCceE
Q 032643 68 EVVLISGVQ--RNFMLYEVISILEEEGAQV 95 (136)
Q Consensus 68 eV~l~s~~~--~~~~Ls~vl~vLeEeGl~V 95 (136)
.|.++|+.+ ......++-+.+++.|+++
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~ 31 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPL 31 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcE
Confidence 466677654 6677788889999999875
No 196
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=26.33 E-value=89 Score=21.91 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=12.2
Q ss_pred HHHHHHH-HHHHHHHHHHH
Q 032643 13 CYIKQLR-ERIDKLNRMKG 30 (136)
Q Consensus 13 ~YIk~Lq-~kve~L~~kk~ 30 (136)
-||++.| +++++|++|-+
T Consensus 64 ~Y~r~~EkEqL~~Lk~kl~ 82 (100)
T PF04568_consen 64 QYFRKKEKEQLKKLKEKLK 82 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4777766 77888766543
No 197
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=26.25 E-value=1e+02 Score=21.42 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=28.9
Q ss_pred CCeEEEEEc-CCeeEEEEEecCCCccc---HHHHHHHHHHcCce
Q 032643 55 LPVVELRDL-GSSIEVVLISGVQRNFM---LYEVISILEEEGAQ 94 (136)
Q Consensus 55 ~p~V~V~~~-~~~~eV~l~s~~~~~~~---Ls~vl~vLeEeGl~ 94 (136)
--.|+|.+. .+|++|.+-|...++|- -.-|.++|.+.|++
T Consensus 16 D~~V~v~P~~~~gi~iel~S~V~kQfG~~Ir~~v~etL~~lgV~ 59 (92)
T TIGR01608 16 DVMIMVEPAMQVGIEIDLVSDVKKQFGDDIESTVKETLKLLGVE 59 (92)
T ss_pred cEEEEEEeCCCCcEEEEEEEHHHHHHhHHHHHHHHHHHHHcCCc
Confidence 347888996 77899999887654443 45567778877764
No 198
>COG0347 GlnK Nitrogen regulatory protein PII [Amino acid transport and metabolism]
Probab=26.23 E-value=59 Score=23.35 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=15.4
Q ss_pred CcccHHHHHHHHHHcCc
Q 032643 77 RNFMLYEVISILEEEGA 93 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl 93 (136)
+|+.|.++.++|++.|+
T Consensus 9 RP~kl~~vkeaL~~~G~ 25 (112)
T COG0347 9 RPFKLDDVKEALEKAGV 25 (112)
T ss_pred CHHHhHHHHHHHHHcCC
Confidence 58899999999999993
No 199
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=26.18 E-value=81 Score=20.78 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCceEEEeEEEEeCC
Q 032643 82 YEVISILEEEGAQVVSASFSTIGD 105 (136)
Q Consensus 82 s~vl~vLeEeGl~Vvsa~~s~~~~ 105 (136)
++|.+.|.+.|++|.++.--...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~ 25 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRD 25 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccC
Confidence 578999999999999998765444
No 200
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=26.05 E-value=95 Score=22.80 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 8 LDLACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 8 l~eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
+..--.||++|+++++.+..++++....
T Consensus 57 le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 57 LERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445689999999999999888766554
No 201
>COG4424 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.04 E-value=43 Score=27.03 Aligned_cols=20 Identities=15% Similarity=0.287 Sum_probs=17.0
Q ss_pred CChhhhHHHHHHHHHHHHHH
Q 032643 2 LSQEDQLDLACCYIKQLRER 21 (136)
Q Consensus 2 ~s~~d~l~eA~~YIk~Lq~k 21 (136)
|+.||.+.+|++|+|--|.+
T Consensus 123 l~R~dkv~QAvSl~rA~QTg 142 (250)
T COG4424 123 LHRPDKVSQAVSLWRAVQTG 142 (250)
T ss_pred eecchHHHHHHHHHHHHHhc
Confidence 57899999999999877654
No 202
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=25.67 E-value=1.6e+02 Score=20.68 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 8 LDLACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 8 l~eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
..-+.+.++++++++++|++.++.|...
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (126)
T cd04785 81 DAIARAHLADVRARIADLRRLEAELKRM 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335677888888888888888776553
No 203
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=25.04 E-value=1.7e+02 Score=20.54 Aligned_cols=29 Identities=17% Similarity=0.249 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 7 QLDLACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
...-.-+.+..+++++++|+..++.|...
T Consensus 77 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 105 (124)
T TIGR02051 77 MYELASRKLKSVQAKMADLLRIERLLEEL 105 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566788888888888877766553
No 204
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=24.78 E-value=1.6e+02 Score=20.94 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 032643 9 DLACCYIKQLRERIDKLNRMKGQAMKSI 36 (136)
Q Consensus 9 ~eA~~YIk~Lq~kve~L~~kk~~l~~~~ 36 (136)
.-.-+.+.+|++++++|+..++.|....
T Consensus 84 ~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (131)
T TIGR02043 84 AIVDAKLELVDEKINELTKIRRSLKKLS 111 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678888888888888887776543
No 205
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.76 E-value=82 Score=25.30 Aligned_cols=21 Identities=38% Similarity=0.384 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 032643 8 LDLACCYIKQLRERIDKLNRM 28 (136)
Q Consensus 8 l~eA~~YIk~Lq~kve~L~~k 28 (136)
|-.|...||+||+||..|+.-
T Consensus 57 Lk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 57 LKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 344556677777777777654
No 206
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=24.61 E-value=1.9e+02 Score=18.31 Aligned_cols=46 Identities=28% Similarity=0.317 Sum_probs=32.9
Q ss_pred eEEEEEcCCeeEEEEEecCC--C---cccHHHHHHHHHHcCceEEEeEEEE
Q 032643 57 VVELRDLGSSIEVVLISGVQ--R---NFMLYEVISILEEEGAQVVSASFST 102 (136)
Q Consensus 57 ~V~V~~~~~~~eV~l~s~~~--~---~~~Ls~vl~vLeEeGl~Vvsa~~s~ 102 (136)
.|.++..++++.|.+.+..+ . .-.+.++-+.|.+.|+.+.+.+++.
T Consensus 28 ~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~ 78 (85)
T PF02120_consen 28 EVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQ 78 (85)
T ss_dssp EEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEES
T ss_pred EEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEE
Confidence 57788889999999887654 1 1246778888999999999877764
No 207
>PF10612 Spore-coat_CotZ: Spore coat protein Z; InterPro: IPR019593 This entry represents proteins spore coat proteins Z (aka CotZ) and Y (aka CotY). They belong to a cysteine-rich spore coat family and are necessary for the assembly of intact exosporium.
Probab=24.60 E-value=70 Score=24.31 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032643 8 LDLACCYIKQLRERIDK 24 (136)
Q Consensus 8 l~eA~~YIk~Lq~kve~ 24 (136)
|-|+++.|++||+.+++
T Consensus 15 V~dvv~~I~dlQ~~a~~ 31 (156)
T PF10612_consen 15 VCDVVRFILDLQDAAED 31 (156)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67999999999999966
No 208
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.60 E-value=88 Score=21.66 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 032643 7 QLDLACCYIKQLRERIDKLNRM 28 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~~k 28 (136)
.....-+||+-|++.+++++-.
T Consensus 6 l~ekiekYi~~leeaL~~~k~~ 27 (90)
T COG1849 6 LAEKIEKYIELLEEALKEIKSR 27 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhccC
Confidence 4456789999999999998653
No 209
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=24.39 E-value=1e+02 Score=16.07 Aligned_cols=14 Identities=43% Similarity=0.778 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q 032643 15 IKQLRERIDKLNRM 28 (136)
Q Consensus 15 Ik~Lq~kve~L~~k 28 (136)
|..|+.+|..|+.+
T Consensus 3 ~~rlr~rI~dLer~ 16 (23)
T PF04508_consen 3 MNRLRNRISDLERQ 16 (23)
T ss_pred HHHHHHHHHHHHHH
Confidence 45677777777654
No 210
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=24.16 E-value=3.5e+02 Score=21.05 Aligned_cols=58 Identities=14% Similarity=0.096 Sum_probs=41.4
Q ss_pred cccHHHHHHHHHHc--CceEEEeEEEEeCC-eEEEEEEEEeeccCcccchHHHHHHHhhhh
Q 032643 78 NFMLYEVISILEEE--GAQVVSASFSTIGD-KIFHTVRAQAKISRLGVETSIACQRLHDLV 135 (136)
Q Consensus 78 ~~~Ls~vl~vLeEe--Gl~Vvsa~~s~~~~-r~fhtI~~qv~~~~~~~d~~~l~erL~~~i 135 (136)
+....++-+.+++. ..+|-+...-..|. +.+=.+|.+++.....-++.++.+|+++.+
T Consensus 204 ~~~~~~i~~~i~~~~~v~~v~~~~~~~~g~~~~~v~i~v~v~~~~~v~~~~~i~~~i~~~l 264 (284)
T PF01545_consen 204 PELVEKIRRIIESVPGVIEVHDLRVWQVGRNKYVVEIHVQVDPDMSVEEAHEIRERIEKRL 264 (284)
T ss_dssp HHHHHHHHHHHHHTSS-SEEEEEEEEEETT-EEEEEEEEEETTTSBHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHhhccCCceEeccceEEEEecCCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 34457777777543 58999999999998 888889999876543445666777776643
No 211
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=24.14 E-value=61 Score=24.21 Aligned_cols=34 Identities=15% Similarity=0.306 Sum_probs=27.0
Q ss_pred CCeeEEEEEecCC--CcccHHHHHHHHHHcCceEEE
Q 032643 64 GSSIEVVLISGVQ--RNFMLYEVISILEEEGAQVVS 97 (136)
Q Consensus 64 ~~~~eV~l~s~~~--~~~~Ls~vl~vLeEeGl~Vvs 97 (136)
.....|+.+|++. +.-.+-++++.|.|.|++-+=
T Consensus 61 ~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 61 EEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDIL 96 (143)
T ss_pred hcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceE
Confidence 4567788888885 778889999999999986543
No 212
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=24.07 E-value=1.7e+02 Score=21.70 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=26.3
Q ss_pred EEEecC--CCcccHHHHHHHHHHcCceEEEeEEEEeCC
Q 032643 70 VLISGV--QRNFMLYEVISILEEEGAQVVSASFSTIGD 105 (136)
Q Consensus 70 ~l~s~~--~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~ 105 (136)
..||-+ |+++.|-.++.+|.|+|+++---+..-.++
T Consensus 4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~d 41 (142)
T COG4747 4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGD 41 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccC
Confidence 345544 489999999999999999876655544444
No 213
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=24.04 E-value=1.1e+02 Score=26.86 Aligned_cols=20 Identities=25% Similarity=0.697 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032643 8 LDLACCYIKQLRERIDKLNR 27 (136)
Q Consensus 8 l~eA~~YIk~Lq~kve~L~~ 27 (136)
+..++.||+.||+.-++..+
T Consensus 275 Lk~s~dYIr~Lqq~~q~~~E 294 (411)
T KOG1318|consen 275 LKASCDYIRELQQTLQRARE 294 (411)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 67789999999988775443
No 214
>PF13606 Ank_3: Ankyrin repeat
Probab=24.01 E-value=51 Score=17.43 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCceE
Q 032643 82 YEVISILEEEGAQV 95 (136)
Q Consensus 82 s~vl~vLeEeGl~V 95 (136)
.++++.|-|.|++|
T Consensus 15 ~e~v~~Ll~~gadv 28 (30)
T PF13606_consen 15 IEIVKYLLEHGADV 28 (30)
T ss_pred HHHHHHHHHcCCCC
Confidence 57889999999875
No 215
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.73 E-value=82 Score=19.48 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=21.2
Q ss_pred EEEEEecCCCcccHHHHHHHHHHcCceE
Q 032643 68 EVVLISGVQRNFMLYEVISILEEEGAQV 95 (136)
Q Consensus 68 eV~l~s~~~~~~~Ls~vl~vLeEeGl~V 95 (136)
+++++||+. .--+.++|..+.+.|+.+
T Consensus 2 ~~ll~~g~~-~~el~~~l~~~r~~~~~~ 28 (58)
T PF12646_consen 2 EFLLFSGFS-GEELDKFLDALRKAGIPI 28 (58)
T ss_pred CEEEECCCC-HHHHHHHHHHHHHcCCCc
Confidence 356788886 347999999999999833
No 216
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=23.70 E-value=78 Score=21.37 Aligned_cols=35 Identities=11% Similarity=0.290 Sum_probs=23.4
Q ss_pred EEEEecCC--CcccHHHHHHHHHHcCce--EEEeEEEEe
Q 032643 69 VVLISGVQ--RNFMLYEVISILEEEGAQ--VVSASFSTI 103 (136)
Q Consensus 69 V~l~s~~~--~~~~Ls~vl~vLeEeGl~--Vvsa~~s~~ 103 (136)
|.++|+.+ ..++..++-+.++++|++ |..++.+.+
T Consensus 2 Il~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~ 40 (96)
T cd05564 2 ILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESEL 40 (96)
T ss_pred EEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHH
Confidence 44566654 557788999999999985 444444433
No 217
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.65 E-value=1.8e+02 Score=20.14 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 9 DLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 9 ~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
.-..+.+..|++++++|+..++.|..
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~ 107 (123)
T cd04770 82 ALLEEKLAEVEAKIAELQALRAELAG 107 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677778888888777766654
No 218
>PRK14635 hypothetical protein; Provisional
Probab=23.61 E-value=3.2e+02 Score=20.42 Aligned_cols=56 Identities=9% Similarity=0.143 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEE-ee--ccCcc-cchHHHHHHHhhhhC
Q 032643 81 LYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQ-AK--ISRLG-VETSIACQRLHDLVD 136 (136)
Q Consensus 81 Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~q-v~--~~~~~-~d~~~l~erL~~~i~ 136 (136)
+.++++-.-+.|++++...+..-+++.+-.|.-- .. ...++ =||+++++.+-.++|
T Consensus 8 i~~l~~~~~~~g~el~dve~~~~~~~~~lrV~ID~~~~~~~gv~lddC~~vSr~is~~LD 67 (162)
T PRK14635 8 ISEILDRVLALPVKLYSLKVNQRPNHSLIEVVLDNLEHPYGSVSLLECEQVSRKLKEELE 67 (162)
T ss_pred HHHHHHHHHCCCCEEEEEEEEecCCCcEEEEEEecCCCCCCCcCHHHHHHHHHHHHHHhC
Confidence 4455444445799999999988777644444432 11 12233 368899998877764
No 219
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=23.55 E-value=80 Score=19.93 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032643 8 LDLACCYIKQLRERIDK 24 (136)
Q Consensus 8 l~eA~~YIk~Lq~kve~ 24 (136)
+.=|.||+++-|+.+++
T Consensus 7 mqIaMK~lPEak~~L~k 23 (56)
T PF10815_consen 7 MQIAMKYLPEAKEELDK 23 (56)
T ss_pred HHHHHHHhHHHHHHHHH
Confidence 34588999997776654
No 220
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=23.37 E-value=1.8e+02 Score=20.45 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 9 DLACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 9 ~eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
.-..+.+..|++++++|+..|+.|...
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (127)
T TIGR02044 82 ARTLEKVAEIERKISELQSMRDQLEAL 108 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567888888888888888776544
No 221
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=23.34 E-value=2.2e+02 Score=18.42 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=28.2
Q ss_pred eeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEE
Q 032643 66 SIEVVLISGVQRNFMLYEVISILEEEGAQVVSASF 100 (136)
Q Consensus 66 ~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~ 100 (136)
.+.|.+.-+...++.-.++-..|++.|+.+++..-
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~~n 37 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTVVEVGN 37 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCceeecCC
Confidence 35566666777789999999999999999986643
No 222
>PF12633 Adenyl_cycl_N: Adenylate cyclase NT domain; InterPro: IPR024685 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria. This entry represents the N-terminal domain of class-I adenylate cyclases.
Probab=23.32 E-value=84 Score=24.82 Aligned_cols=22 Identities=32% Similarity=0.785 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhh
Q 032643 13 CYIKQLRERIDKLNRMK-GQAMK 34 (136)
Q Consensus 13 ~YIk~Lq~kve~L~~kk-~~l~~ 34 (136)
+||+.+++|++.|++.| ++++.
T Consensus 3 ~~l~~~~~r~~~lN~~R~~RAl~ 25 (204)
T PF12633_consen 3 NYLETLKQRFDRLNQLRLERALA 25 (204)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999988 45444
No 223
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=23.29 E-value=1.8e+02 Score=20.56 Aligned_cols=25 Identities=28% Similarity=0.212 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 11 ACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 11 A~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
.-+.+.+|++++++|++.++.|...
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (127)
T TIGR02047 84 LDEHISHVRARIIKLQALIEQLVDL 108 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557888888888888888777653
No 224
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.93 E-value=1.6e+02 Score=16.60 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=20.9
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEE
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASF 100 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~ 100 (136)
+.+..+.+++++|.+.|+.+..-+.
T Consensus 10 ~~~~~~~~i~~~L~~~~i~i~~i~~ 34 (61)
T cd04891 10 DKPGVAAKIFSALAEAGINVDMIVQ 34 (61)
T ss_pred CCCcHHHHHHHHHHHcCCcEEEEEE
Confidence 4678899999999999999866554
No 225
>PRK14011 prefoldin subunit alpha; Provisional
Probab=22.91 E-value=1.6e+02 Score=21.82 Aligned_cols=10 Identities=10% Similarity=-0.070 Sum_probs=7.1
Q ss_pred hHHHHHHHHH
Q 032643 7 QLDLACCYIK 16 (136)
Q Consensus 7 ~l~eA~~YIk 16 (136)
.+++|+.|++
T Consensus 85 ~~~eA~~~~~ 94 (144)
T PRK14011 85 DVSEVIEDFK 94 (144)
T ss_pred cHHHHHHHHH
Confidence 4678887765
No 226
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=22.82 E-value=1.7e+02 Score=19.91 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=16.5
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHhhh
Q 032643 8 LDLACCY----IKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 8 l~eA~~Y----Ik~Lq~kve~L~~kk~~l~~ 34 (136)
+++|.+| |+.|++++++++++.+++..
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~ 105 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQA 105 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655 45667777777666655543
No 227
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=22.75 E-value=2.9e+02 Score=24.63 Aligned_cols=44 Identities=14% Similarity=0.026 Sum_probs=30.9
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEE--EEEEEEee
Q 032643 73 SGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIF--HTVRAQAK 116 (136)
Q Consensus 73 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~f--htI~~qv~ 116 (136)
+-.++++.|+++|.+|++.|+.+..=-|--..++.+ |.+...+.
T Consensus 37 sL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E 82 (464)
T TIGR01270 37 SLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE 82 (464)
T ss_pred ECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE
Confidence 434578999999999999999998777643333322 55555554
No 228
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=22.69 E-value=1.9e+02 Score=20.27 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 11 ACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 11 A~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
..+.++.+++++++|++.++.|...
T Consensus 84 l~~~~~~l~~~i~~L~~~~~~L~~~ 108 (127)
T cd04784 84 IDEHLAHVRARIAELQALEKQLQAL 108 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888877766543
No 229
>PF08965 DUF1870: Domain of unknown function (DUF1870); InterPro: IPR015060 This family consist of hypothetical bacterial proteins. ; PDB: 1S4K_A.
Probab=22.52 E-value=1.2e+02 Score=22.07 Aligned_cols=19 Identities=11% Similarity=0.261 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 032643 17 QLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 17 ~Lq~kve~L~~kk~~l~~~ 35 (136)
+-.+++.+|..+|.++...
T Consensus 46 ~Vie~l~~m~~~R~~~i~a 64 (118)
T PF08965_consen 46 DVIEELLEMKSQRKQRINA 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766554
No 230
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.44 E-value=2.1e+02 Score=18.18 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 032643 7 QLDLACCYIKQLRERIDKLNRMKGQ 31 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~~kk~~ 31 (136)
.++|=-.||-.|+.-|.+++..+..
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677788999999999999876553
No 231
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=22.43 E-value=49 Score=21.77 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=12.6
Q ss_pred ccHHHHHHHHHHcCceEEE
Q 032643 79 FMLYEVISILEEEGAQVVS 97 (136)
Q Consensus 79 ~~Ls~vl~vLeEeGl~Vvs 97 (136)
=.+-+|+..|++.|++|++
T Consensus 39 e~id~i~~~L~~~gI~Vvd 57 (82)
T PF03979_consen 39 EQIDEIYDTLEDEGIEVVD 57 (82)
T ss_dssp HHHHHHHHHHHTT----B-
T ss_pred HHHHHHHHHHHHCCCEEec
Confidence 3688999999999999998
No 232
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=22.40 E-value=1.3e+02 Score=22.39 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 032643 10 LACCYIKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 10 eA~~YIk~Lq~kve~L~~kk~~l~ 33 (136)
|=++|.| |+.|+++|+++=+++.
T Consensus 64 eFAkwaK-l~Rk~~kl~~el~~~~ 86 (161)
T PF04420_consen 64 EFAKWAK-LNRKLDKLEEELEKLN 86 (161)
T ss_dssp SHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5567776 6777777766554443
No 233
>PF13713 BRX_N: Transcription factor BRX N-terminal domain
Probab=22.34 E-value=1.4e+02 Score=17.41 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032643 10 LACCYIKQLRERIDKLNRM 28 (136)
Q Consensus 10 eA~~YIk~Lq~kve~L~~k 28 (136)
.|-.+||.|-.++++|.+|
T Consensus 9 aaKe~IKsLt~QlK~maek 27 (39)
T PF13713_consen 9 AAKEVIKSLTAQLKDMAEK 27 (39)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999877
No 234
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=22.25 E-value=88 Score=25.59 Aligned_cols=31 Identities=35% Similarity=0.471 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHcCceEEEe---EEEEeCCeEEEE
Q 032643 80 MLYEVISILEEEGAQVVSA---SFSTIGDKIFHT 110 (136)
Q Consensus 80 ~Ls~vl~vLeEeGl~Vvsa---~~s~~~~r~fht 110 (136)
+-+.|..+|.++|+..|++ ++++.|+|+.|+
T Consensus 82 L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~ 115 (252)
T COG1608 82 LNSIVVDALLDAGVRAVSVVPISFSTFNGRILYT 115 (252)
T ss_pred HHHHHHHHHHhcCCccccccCcceeecCCceeec
Confidence 4578999999999999763 445789999998
No 235
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=22.20 E-value=1.8e+02 Score=17.14 Aligned_cols=35 Identities=20% Similarity=0.192 Sum_probs=25.5
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRA 113 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~ 113 (136)
.+....+++++|++.|+.|.--..+. +.+-+++..
T Consensus 13 ~~~~~~~if~~l~~~~i~v~~i~t~~--~~is~~v~~ 47 (62)
T cd04890 13 EVGFLRKIFEILEKHGISVDLIPTSE--NSVTLYLDD 47 (62)
T ss_pred ccCHHHHHHHHHHHcCCeEEEEecCC--CEEEEEEeh
Confidence 56688999999999999888775422 555555544
No 236
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=22.16 E-value=2.8e+02 Score=19.27 Aligned_cols=28 Identities=11% Similarity=-0.059 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 7 QLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
...+++++|+..++++++.++|=+.|..
T Consensus 37 lyeeGv~L~k~C~~~L~~AE~kV~~L~~ 64 (95)
T PRK14069 37 AYERGMELKKICSGILDDAEGKIEALTK 64 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999888677664
No 237
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=22.15 E-value=76 Score=25.74 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHH
Q 032643 15 IKQLRERIDKLNRMK 29 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk 29 (136)
||++++||++|+.+=
T Consensus 57 L~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 57 LKQAQARIQELEAQL 71 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788999999998773
No 238
>COG1591 Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair]
Probab=22.08 E-value=2.9e+02 Score=20.58 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=36.3
Q ss_pred HHHHHHHHcCceEEEeEEEE-----------eCCeEEEEEEEEeec-cCcccchHHHHHHHhh
Q 032643 83 EVISILEEEGAQVVSASFST-----------IGDKIFHTVRAQAKI-SRLGVETSIACQRLHD 133 (136)
Q Consensus 83 ~vl~vLeEeGl~Vvsa~~s~-----------~~~r~fhtI~~qv~~-~~~~~d~~~l~erL~~ 133 (136)
+++..|.|+|+.||-+-.|- .++.++..|-|+... ..+.+|.+.+. +|..
T Consensus 12 eLv~~L~e~GfAvvR~paSG~sk~p~pDivA~~g~~~l~iE~K~~~~~kiYl~~e~ve-~L~~ 73 (137)
T COG1591 12 ELVRILWERGFAVVRAPASGGSKRPLPDIVAGNGGVYLAIEVKSRRETKIYLDKEQVE-KLVE 73 (137)
T ss_pred HHHHHHHhcCceEEEcccCCCCCCCCCCEEecCCCEEEEEEEEeccCCcEEEcHHHHH-HHHH
Confidence 67889999999999883222 356889999998843 46788877764 3433
No 239
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=22.00 E-value=2.3e+02 Score=18.15 Aligned_cols=29 Identities=3% Similarity=0.192 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 6 DQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
....++++++++.+++++..++|=..+..
T Consensus 29 ~lyeeG~~L~k~c~~~L~~ae~kv~~l~~ 57 (67)
T TIGR01280 29 NLFERGMALARRCEKKLAQAEQRVRKLLK 57 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34568999999999999999888666654
No 240
>PRK14636 hypothetical protein; Provisional
Probab=21.97 E-value=3.5e+02 Score=20.59 Aligned_cols=51 Identities=16% Similarity=0.114 Sum_probs=34.1
Q ss_pred HHHHHcCceEEEeEEEEeCCeEEEEEEEEeec-cCcc-cchHHHHHHHhhhhC
Q 032643 86 SILEEEGAQVVSASFSTIGDKIFHTVRAQAKI-SRLG-VETSIACQRLHDLVD 136 (136)
Q Consensus 86 ~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~-~~~~-~d~~~l~erL~~~i~ 136 (136)
.++++.|++++...+..-+...+-.|.-.-.+ ..++ =||+++++.|-.++|
T Consensus 13 p~~~~~GleLvdve~~~~~~~~~lrV~ID~~~~ggV~lDDC~~vSr~Is~~LD 65 (176)
T PRK14636 13 PEAKALGLDLVRVAMFGGKSDPTLQIMAERPDTRQLVIEDCAALSRRLSDVFD 65 (176)
T ss_pred HHHHHcCCEEEEEEEEcCCCCeEEEEEEECCCCCCcCHHHHHHHHHHHHHHhc
Confidence 35677899999999977665555455543221 1133 468899998877664
No 241
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=21.84 E-value=2e+02 Score=19.30 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 032643 8 LDLACCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 8 l~eA~~YIk~Lq~kve~L~~kk~~l 32 (136)
.....++...|++++++|+..++.|
T Consensus 75 ~~~l~~~~~~l~~~i~~l~~~~~~l 99 (103)
T cd01106 75 LEALREQKELLEEKKERLDKLIKTI 99 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666665555544
No 242
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.98 E-value=2e+02 Score=19.07 Aligned_cols=29 Identities=3% Similarity=0.206 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 7 QLDLACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
...+|+.++++.++++++.++|=..|...
T Consensus 39 lyeeg~~L~k~C~~~L~~ae~ki~~l~~~ 67 (80)
T PRK00977 39 AFERGVALARQCQKKLQQAEQRVEKLLDE 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999998886766543
No 243
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.91 E-value=77 Score=26.61 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 032643 9 DLACCYIKQLRERIDKLNRMKGQAMKSI 36 (136)
Q Consensus 9 ~eA~~YIk~Lq~kve~L~~kk~~l~~~~ 36 (136)
++...==++|++|-+||+.|-+||.++.
T Consensus 60 ~~~~~kq~eL~~rqeEL~Rke~ELdRRE 87 (313)
T KOG3088|consen 60 KDLAKKQAELLKKQEELRRKEQELDRRE 87 (313)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444455789999999988777887765
No 244
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=20.83 E-value=1.2e+02 Score=20.34 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032643 15 IKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l 32 (136)
++.|+++++.|+.++..+
T Consensus 72 ~~~l~~~l~~l~~~~~~~ 89 (104)
T PF13600_consen 72 LKELEEELEALEDELAAL 89 (104)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666555444
No 245
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=20.82 E-value=2.3e+02 Score=18.88 Aligned_cols=55 Identities=9% Similarity=0.014 Sum_probs=28.8
Q ss_pred HHHHHHHHHHc-CceEEEeEEEEeCCeEEEEEEEEeeccC-cccchHHHHHHHhhhh
Q 032643 81 LYEVISILEEE-GAQVVSASFSTIGDKIFHTVRAQAKISR-LGVETSIACQRLHDLV 135 (136)
Q Consensus 81 Ls~vl~vLeEe-Gl~Vvsa~~s~~~~r~fhtI~~qv~~~~-~~~d~~~l~erL~~~i 135 (136)
-..+...|++. +++|+..---..=+.-...--|-|++-. .+-++++|.+|+.+.|
T Consensus 16 ~~~~~~~Le~~p~~~Vie~gCl~~Cg~C~~~pFAlVnG~~V~A~t~eeL~~kI~~~i 72 (78)
T PF07293_consen 16 TDQVYEKLEKDPDIDVIEYGCLSYCGPCAKKPFALVNGEIVAAETAEELLEKIKEKI 72 (78)
T ss_pred hHHHHHHHhcCCCccEEEcChhhhCcCCCCCccEEECCEEEecCCHHHHHHHHHHHH
Confidence 45578888877 8888753211110111111122222211 1567788988888776
No 246
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=20.77 E-value=2.6e+02 Score=23.71 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=33.2
Q ss_pred CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEE
Q 032643 65 SSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFH 109 (136)
Q Consensus 65 ~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fh 109 (136)
+|+..++ |. |....++++.|+.++..|+.++|..-|-|.+|
T Consensus 291 gGFllf~-~~---p~k~~~l~r~l~~~~~~~~~~~Fd~~Gsr~i~ 331 (333)
T COG2605 291 GGFLLFF-CD---PSKRNELARALEKEQGFVVDTSFDKEGSRIIF 331 (333)
T ss_pred ccEEEEE-eC---ccchHHHHHHHHHhcCCeEEEEecCCCeEEEe
Confidence 5777655 44 34678999999999999999999888888766
No 247
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=20.64 E-value=3e+02 Score=18.97 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 032643 6 DQLDLACCYIKQLRERIDKLNRM 28 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~k 28 (136)
+-+.+..+=++++|+++++++++
T Consensus 5 ~n~~~m~kqaq~mQ~k~~~~q~e 27 (102)
T TIGR00103 5 GNLGELMKQAQQMQEKMKKLQEE 27 (102)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34777888888899999988766
No 248
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=20.55 E-value=2.2e+02 Score=19.95 Aligned_cols=25 Identities=4% Similarity=-0.090 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 10 LACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 10 eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
...+.+.+|++++++|++.++.|..
T Consensus 84 ~l~~~~~~l~~~~~~l~~~~~~L~~ 108 (118)
T cd04776 84 KIEKRRAELEQQRRDIDAALAELDA 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777666665543
No 249
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=20.55 E-value=1.4e+02 Score=22.98 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 032643 15 IKQLRERIDKLNRMKGQAMKSI 36 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l~~~~ 36 (136)
|..|+++++.|+++=++|+..-
T Consensus 1 I~~LE~~~~~l~~e~~~Lk~~p 22 (176)
T PF10737_consen 1 IQRLEQRLQELQQELEELKQQP 22 (176)
T ss_pred ChHHHHHHHHHHHHHHHHHhCC
Confidence 5678888888887777776553
No 250
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=20.29 E-value=1.5e+02 Score=26.45 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=13.4
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032643 3 SQEDQLDLACCYIKQLRERIDKLNRM 28 (136)
Q Consensus 3 s~~d~l~eA~~YIk~Lq~kve~L~~k 28 (136)
+.+++|.+-.+-++.||++|++|+++
T Consensus 22 a~a~~i~~L~~ql~aLq~~v~eL~~~ 47 (514)
T PF11336_consen 22 ATADQIKALQAQLQALQDQVNELRAK 47 (514)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555443
No 251
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=20.13 E-value=2.2e+02 Score=20.53 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 9 DLACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 9 ~eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
.-.-..+.+|++++++|++.++.|...
T Consensus 84 ~~l~~~~~~l~~~i~~L~~~~~~L~~~ 110 (140)
T PRK09514 84 GIVDEKLAEVEAKIAELQHMRRSLQRL 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777888888887777666543
No 252
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=20.10 E-value=1.9e+02 Score=21.44 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032643 5 EDQLDLACCYIKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 5 ~d~l~eA~~YIk~Lq~kve~L~~kk~~l~ 33 (136)
-+-++-.+.||+.|+..++.++.+..+|.
T Consensus 39 ~~K~~~~~~~Ik~~ea~~e~~k~E~krL~ 67 (162)
T PF05565_consen 39 EEKADNIAKVIKNLEADIEAIKAEIKRLQ 67 (162)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35566778889888887777766555443
No 253
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=20.08 E-value=2.3e+02 Score=17.47 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=22.0
Q ss_pred cCCCcccHHHHHHHHHHcCceEEEeEEEE
Q 032643 74 GVQRNFMLYEVISILEEEGAQVVSASFST 102 (136)
Q Consensus 74 ~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~ 102 (136)
+...+..+.+++.+|.+.|++|..-+.+.
T Consensus 11 gm~~~gv~~ki~~~L~~~~I~v~~i~~~~ 39 (66)
T cd04915 11 DLSTPGVLARGLAALAEAGIEPIAAHQSM 39 (66)
T ss_pred CCCcchHHHHHHHHHHHCCCCEEEEEecC
Confidence 34456789999999999999995555443
Done!