Query 032643
Match_columns 136
No_of_seqs 102 out of 146
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hlo_A Protein (transcription 97.2 0.00041 1.4E-08 45.6 4.4 33 2-34 46-78 (80)
2 1nkp_B MAX protein, MYC proto- 97.1 0.00065 2.2E-08 44.8 4.7 33 2-34 36-68 (83)
3 1am9_A Srebp-1A, protein (ster 97.0 0.0011 3.7E-08 43.9 4.7 35 2-36 39-73 (82)
4 1nlw_A MAD protein, MAX dimeri 96.6 0.0034 1.2E-07 41.4 4.8 32 3-34 37-68 (80)
5 1zpv_A ACT domain protein; str 96.5 0.039 1.3E-06 35.5 9.9 60 72-134 10-69 (91)
6 1a0a_A BHLH, protein (phosphat 95.6 0.0025 8.5E-08 40.3 0.4 21 2-22 41-61 (63)
7 1u8s_A Glycine cleavage system 95.4 0.1 3.6E-06 38.3 8.9 60 71-134 10-69 (192)
8 1nkp_A C-MYC, MYC proto-oncoge 95.3 0.024 8.1E-07 37.9 4.6 30 4-33 43-72 (88)
9 2nyi_A Unknown protein; protei 94.8 0.17 5.7E-06 37.6 8.4 66 69-134 7-72 (195)
10 2ko1_A CTR148A, GTP pyrophosph 94.0 0.25 8.7E-06 31.0 7.0 60 72-134 10-69 (88)
11 1u8s_A Glycine cleavage system 93.6 0.55 1.9E-05 34.3 9.0 64 68-134 94-165 (192)
12 4ati_A MITF, microphthalmia-as 93.4 0.075 2.6E-06 37.3 3.8 26 4-29 65-90 (118)
13 2ql2_B Neurod1, neurogenic dif 93.2 0.044 1.5E-06 34.1 2.0 22 2-23 37-58 (60)
14 2nyi_A Unknown protein; protei 93.1 0.55 1.9E-05 34.7 8.4 62 69-134 95-162 (195)
15 3u5v_A Protein MAX, transcript 92.9 0.07 2.4E-06 34.7 2.8 22 5-26 44-65 (76)
16 3p96_A Phosphoserine phosphata 90.6 0.86 2.9E-05 36.9 7.5 64 69-134 14-77 (415)
17 3he4_B Synzip5; heterodimeric 89.8 0.58 2E-05 26.9 4.2 30 5-34 2-31 (46)
18 1mdy_A Protein (MYOD BHLH doma 89.2 0.1 3.4E-06 33.3 0.7 22 2-23 46-67 (68)
19 4ath_A MITF, microphthalmia-as 88.4 0.53 1.8E-05 31.2 3.8 24 7-30 33-56 (83)
20 1an4_A Protein (upstream stimu 88.1 0.089 3.1E-06 32.7 -0.1 20 3-22 44-63 (65)
21 3lou_A Formyltetrahydrofolate 87.2 2.7 9.2E-05 33.4 8.0 65 70-134 13-79 (292)
22 3o1l_A Formyltetrahydrofolate 86.9 2.8 9.7E-05 33.5 8.0 64 69-134 24-89 (302)
23 3n0v_A Formyltetrahydrofolate 86.6 3 0.0001 33.0 8.0 62 70-134 11-74 (286)
24 3obi_A Formyltetrahydrofolate 86.2 3.5 0.00012 32.7 8.2 64 69-134 8-73 (288)
25 1y7p_A Hypothetical protein AF 85.8 1.8 6.1E-05 33.6 6.1 57 73-134 10-70 (223)
26 4h10_B Circadian locomoter out 82.5 0.86 2.9E-05 29.2 2.5 21 5-25 44-64 (71)
27 2f1f_A Acetolactate synthase i 80.7 2.5 8.4E-05 30.9 4.8 60 75-136 11-70 (164)
28 2jhe_A Transcription regulator 80.4 4.5 0.00016 27.9 6.0 57 72-134 5-61 (190)
29 4aya_A DNA-binding protein inh 79.0 1.4 4.7E-05 30.0 2.7 23 2-24 60-82 (97)
30 2pc6_A Probable acetolactate s 77.6 3.4 0.00012 30.3 4.7 58 75-136 12-71 (165)
31 1kd8_B GABH BLL, GCN4 acid bas 74.7 3.7 0.00013 22.9 3.2 19 15-33 3-21 (36)
32 3nrb_A Formyltetrahydrofolate 74.2 15 0.0005 29.0 8.0 62 69-134 9-72 (287)
33 2jee_A YIIU; FTSZ, septum, coi 73.0 5.2 0.00018 26.2 4.2 29 5-33 12-40 (81)
34 3twe_A Alpha4H; unknown functi 72.7 5.7 0.0002 20.3 3.4 20 9-28 4-23 (27)
35 2fgc_A Acetolactate synthase, 70.9 11 0.00039 28.3 6.3 57 76-136 38-96 (193)
36 1m45_B IQ2, IQ2 motif from MYO 70.2 6.9 0.00023 19.8 3.3 18 7-27 1-18 (26)
37 2wq1_A General control protein 69.5 5.4 0.00018 21.8 3.0 19 15-33 2-20 (33)
38 2oxj_A Hybrid alpha/beta pepti 66.5 6.7 0.00023 21.6 3.0 20 15-34 3-22 (34)
39 1gd2_E Transcription factor PA 66.5 6.1 0.00021 25.1 3.4 21 12-32 28-48 (70)
40 1xkm_B Distinctin chain B; por 66.2 7.1 0.00024 19.8 2.9 18 7-24 5-22 (26)
41 3c3g_A Alpha/beta peptide with 65.3 7.3 0.00025 21.3 3.0 19 15-33 2-20 (33)
42 1r48_A Proline/betaine transpo 64.3 8.8 0.0003 20.9 3.3 24 12-35 7-30 (33)
43 2l5g_A GPS2 protein, G protein 63.5 15 0.00053 20.5 4.2 26 7-32 9-34 (38)
44 1g1e_B SIN3A; four-helix bundl 61.4 5.6 0.00019 26.2 2.6 20 3-22 5-24 (89)
45 1e91_A Paired amphipathic heli 60.8 5.7 0.00019 25.9 2.5 22 3-24 2-23 (85)
46 2f06_A Conserved hypothetical 58.4 40 0.0014 22.8 8.5 50 76-133 81-130 (144)
47 1jnm_A Proto-oncogene C-JUN; B 58.1 11 0.00037 22.9 3.4 24 12-35 21-44 (62)
48 3c3f_A Alpha/beta peptide with 55.7 14 0.00046 20.3 3.0 19 15-33 3-21 (34)
49 2dgc_A Protein (GCN4); basic d 55.7 14 0.00047 22.7 3.5 23 12-34 29-51 (63)
50 3m48_A General control protein 55.4 8.1 0.00028 21.1 2.1 18 16-33 3-20 (33)
51 2oqq_A Transcription factor HY 54.7 16 0.00054 21.0 3.4 23 13-35 3-25 (42)
52 2wt7_A Proto-oncogene protein 54.5 14 0.00046 22.6 3.4 23 12-34 22-44 (63)
53 2hy6_A General control protein 54.2 13 0.00046 20.3 2.9 19 15-33 3-21 (34)
54 1zme_C Proline utilization tra 53.4 15 0.00053 21.9 3.5 23 12-34 43-65 (70)
55 1kd8_A GABH AIV, GCN4 acid bas 53.3 14 0.00048 20.5 2.9 18 15-32 3-20 (36)
56 4h10_A ARYL hydrocarbon recept 53.2 6.3 0.00022 25.1 1.7 16 5-20 48-63 (73)
57 2f05_A Paired amphipathic heli 52.5 9.1 0.00031 26.0 2.5 22 3-24 2-23 (105)
58 2r2v_A GCN4 leucine zipper; co 50.9 18 0.00061 19.8 3.0 18 15-32 3-20 (34)
59 2bni_A General control protein 49.4 18 0.00061 19.9 2.9 19 15-33 3-21 (34)
60 1t2k_D Cyclic-AMP-dependent tr 48.1 20 0.00068 21.5 3.4 22 13-34 22-43 (61)
61 1dh3_A Transcription factor CR 47.9 23 0.00077 21.1 3.5 22 13-34 22-43 (55)
62 1ib8_A Conserved protein SP14. 47.7 74 0.0025 22.8 7.6 56 81-136 14-69 (164)
63 3fx7_A Putative uncharacterize 46.0 20 0.0007 24.0 3.4 22 7-28 64-85 (94)
64 2d0o_B DIOL dehydratase-reacti 45.3 20 0.00068 25.1 3.4 28 69-96 10-37 (125)
65 1uo4_A General control protein 44.3 24 0.00081 19.3 2.9 18 15-32 3-20 (34)
66 4dzo_A Mitotic spindle assembl 43.2 20 0.00068 24.9 3.1 22 13-34 4-25 (123)
67 3azd_A Short alpha-tropomyosin 41.2 8.4 0.00029 21.4 0.8 23 11-33 2-24 (37)
68 1p9i_A Cortexillin I/GCN4 hybr 41.2 21 0.00072 18.7 2.2 13 16-28 16-28 (31)
69 3s4r_A Vimentin; alpha-helix, 40.8 27 0.00092 23.0 3.4 23 12-34 55-77 (93)
70 3ol1_A Vimentin; structural ge 40.4 26 0.00089 24.0 3.4 22 13-34 20-41 (119)
71 2czy_A Paired amphipathic heli 37.0 21 0.00071 22.6 2.2 19 6-24 2-20 (77)
72 1q08_A Zn(II)-responsive regul 36.8 55 0.0019 20.7 4.4 30 6-35 39-68 (99)
73 2zqm_A Prefoldin beta subunit 36.6 61 0.0021 21.1 4.7 32 3-34 3-34 (117)
74 2js5_A Uncharacterized protein 36.5 24 0.00081 22.5 2.4 18 15-32 5-22 (71)
75 2er8_A Regulatory protein Leu3 36.2 25 0.00086 21.1 2.5 17 12-28 48-64 (72)
76 2yy0_A C-MYC-binding protein; 36.0 38 0.0013 20.0 3.2 20 15-34 28-47 (53)
77 3fs3_A Nucleosome assembly pro 34.8 36 0.0012 28.0 3.8 28 1-28 44-71 (359)
78 1lq7_A Alpha3W; three helix bu 34.7 35 0.0012 20.7 2.9 18 15-32 27-44 (67)
79 2xu6_A MDV1 coiled coil; prote 32.7 58 0.002 20.7 3.8 26 9-34 17-42 (72)
80 1hwt_C Protein (heme activator 31.9 35 0.0012 20.8 2.7 17 12-28 57-73 (81)
81 1pyi_A Protein (pyrimidine pat 31.6 43 0.0015 21.1 3.2 21 12-32 47-67 (96)
82 2esh_A Conserved hypothetical 31.3 69 0.0023 21.1 4.3 35 77-111 47-82 (118)
83 2fi0_A Conserved domain protei 31.0 28 0.00097 21.9 2.2 21 77-97 59-79 (81)
84 1ci6_A Transcription factor AT 30.9 58 0.002 19.7 3.5 22 13-34 23-44 (63)
85 3l7w_A Putative uncharacterize 30.2 97 0.0033 20.0 4.9 33 77-111 39-73 (108)
86 3p01_A Two-component response 30.0 19 0.00066 24.7 1.3 25 8-32 5-29 (184)
87 3o3m_A Alpha subunit 2-hydroxy 29.9 1.8E+02 0.0063 23.4 7.4 35 65-100 256-290 (408)
88 2dnr_A Synaptojanin-1; RRM dom 28.8 1.2E+02 0.0043 19.8 6.0 45 64-111 7-56 (91)
89 1e2b_A Enzyme IIB-cellobiose; 28.1 45 0.0015 22.0 2.9 28 68-95 5-34 (106)
90 1lrz_A FEMA, factor essential 27.7 45 0.0016 27.0 3.4 22 13-34 247-268 (426)
91 1d66_A Protein (GAL4); protein 27.5 16 0.00054 21.5 0.4 15 12-26 51-65 (66)
92 1tif_A IF3-N, translation init 26.9 1.2E+02 0.0042 19.3 4.7 21 79-99 29-49 (78)
93 3dtn_A Putative methyltransfer 26.9 1.2E+02 0.004 21.4 5.2 32 78-109 191-222 (234)
94 1nbw_B Glycerol dehydratase re 26.7 49 0.0017 22.8 2.9 19 77-95 18-36 (117)
95 3gpv_A Transcriptional regulat 26.7 87 0.003 21.7 4.3 28 7-34 96-123 (148)
96 3ri2_A Transcriptional regulat 26.5 65 0.0022 21.8 3.5 35 77-111 51-85 (123)
97 3elk_A Putative transcriptiona 26.0 81 0.0028 21.0 3.9 34 78-111 47-81 (117)
98 3zrx_A AF1503 protein, osmolar 25.9 1.1E+02 0.0037 18.3 4.3 31 4-34 35-65 (115)
99 1r1t_A Transcriptional repress 25.7 1.3E+02 0.0044 19.9 4.9 32 77-112 72-103 (122)
100 1q06_A Transcriptional regulat 25.5 1E+02 0.0035 21.0 4.5 29 8-36 81-109 (135)
101 3zcc_A HAMP, osmolarity sensor 25.5 1.1E+02 0.0038 18.4 4.4 30 5-34 36-65 (114)
102 3gp4_A Transcriptional regulat 25.0 98 0.0034 21.3 4.3 26 9-34 84-109 (142)
103 1pd7_B MAD1; PAH2, SIN3, eukar 24.5 80 0.0027 16.2 2.7 14 7-20 7-20 (26)
104 3lt7_A Adhesin YADA; adhesion, 24.5 97 0.0033 19.2 3.7 23 6-28 23-49 (64)
105 1vlm_A SAM-dependent methyltra 24.0 1.3E+02 0.0044 21.1 5.0 27 79-105 166-192 (219)
106 2cr7_A Paired amphipathic heli 23.7 15 0.0005 23.6 -0.3 21 3-23 5-25 (80)
107 1xma_A Predicted transcription 23.7 98 0.0034 21.4 4.1 35 77-111 75-110 (145)
108 4esf_A PADR-like transcription 23.3 1.2E+02 0.004 20.1 4.3 35 77-111 43-78 (117)
109 1r8d_A Transcription activator 23.0 1.2E+02 0.0039 19.7 4.2 27 7-33 76-102 (109)
110 3k29_A Putative uncharacterize 22.7 1.2E+02 0.0041 22.3 4.5 31 3-33 68-98 (169)
111 3tq7_B Microtubule-associated 22.2 68 0.0023 20.8 2.8 19 12-30 7-25 (82)
112 3f8b_A Transcriptional regulat 22.2 1.4E+02 0.0046 19.6 4.5 35 77-111 46-81 (116)
113 1r1u_A CZRA, repressor protein 21.9 1.6E+02 0.0054 18.6 4.9 31 77-111 52-82 (106)
114 4e61_A Protein BIM1; EB1-like 21.7 1.2E+02 0.0041 20.6 4.0 24 7-30 19-42 (106)
115 1yf2_A Type I restriction-modi 21.6 1.1E+02 0.0038 23.5 4.4 29 6-34 176-204 (425)
116 3aei_A Prefoldin beta subunit 21.4 1.4E+02 0.0047 19.5 4.1 28 7-34 58-89 (99)
117 3hhh_A Transcriptional regulat 21.2 1E+02 0.0036 20.4 3.7 35 77-111 45-80 (116)
118 1iv3_A 2-C-methyl-D-erythritol 21.2 1E+02 0.0036 22.2 3.8 28 77-104 73-100 (152)
119 2djv_A Methionyl-tRNA syntheta 21.1 96 0.0033 19.7 3.3 20 7-26 41-60 (79)
120 4esb_A Transcriptional regulat 21.0 84 0.0029 20.8 3.2 35 77-111 41-76 (115)
121 1gmj_A ATPase inhibitor; coile 21.0 1.6E+02 0.0055 19.1 4.4 27 6-32 51-77 (84)
122 3re3_A 2-C-methyl-D-erythritol 20.9 1.1E+02 0.0039 22.2 4.0 28 77-104 79-106 (162)
123 1gx1_A 2-C-methyl-D-erythritol 20.8 1.2E+02 0.004 22.1 4.0 28 77-104 74-101 (160)
124 3coq_A Regulatory protein GAL4 20.6 1E+02 0.0035 18.9 3.4 21 12-32 44-64 (89)
125 1ydx_A Type I restriction enzy 20.6 1.2E+02 0.004 23.7 4.4 31 6-36 362-392 (406)
126 1t0a_A 2C-methyl-D-erythritol 20.4 1.1E+02 0.0038 22.2 3.9 28 77-104 75-102 (159)
127 2lw9_A Unconventionnal myosin- 20.3 99 0.0034 18.2 2.9 23 12-34 5-27 (51)
128 3lcn_C MRNA transport factor G 20.2 76 0.0026 16.5 2.1 18 10-27 3-20 (29)
129 3f6o_A Probable transcriptiona 20.2 1.8E+02 0.0063 18.7 4.9 33 77-113 44-76 (118)
130 1lfp_A Hypothetical protein AQ 20.1 1.3E+02 0.0044 23.3 4.4 25 78-102 177-201 (249)
No 1
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=97.20 E-value=0.00041 Score=45.59 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=29.0
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 2 LSQEDQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 2 ~s~~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
+|-.+.|..|+.||++||+++++|+.+.++|..
T Consensus 46 ~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 46 ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455678999999999999999999999888754
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=97.11 E-value=0.00065 Score=44.81 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=28.1
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 2 LSQEDQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 2 ~s~~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
+|-.+.|..|++||++||+++++|..++++|..
T Consensus 36 ~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 36 ASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678999999999999999999988887754
No 3
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=96.96 E-value=0.0011 Score=43.89 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=29.9
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 032643 2 LSQEDQLDLACCYIKQLRERIDKLNRMKGQAMKSI 36 (136)
Q Consensus 2 ~s~~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~~~ 36 (136)
++-.+.|.+|+.||++||++++.|.++.+.|....
T Consensus 39 ~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 39 LNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999988887643
No 4
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=96.56 E-value=0.0034 Score=41.43 Aligned_cols=32 Identities=22% Similarity=0.080 Sum_probs=28.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 3 SQEDQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 3 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
|-.+.|..|+.||++||++.++|..+++.|..
T Consensus 37 sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 37 TTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688999999999999999999998887754
No 5
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.54 E-value=0.039 Score=35.49 Aligned_cols=60 Identities=8% Similarity=0.093 Sum_probs=49.2
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 72 ISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 72 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
+.+.++++.|.+|..+|-+.|+++.+.+....++..+-.+..++.+ ..+...+.++|+++
T Consensus 10 v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~---~~~l~~l~~~L~~~ 69 (91)
T 1zpv_A 10 VVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE---KQDFTYLRNEFEAF 69 (91)
T ss_dssp EEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS---CCCHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC---CCCHHHHHHHHHHH
Confidence 5677899999999999999999999999888777766666666643 35778999998865
No 6
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=95.60 E-value=0.0025 Score=40.26 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=18.4
Q ss_pred CChhhhHHHHHHHHHHHHHHH
Q 032643 2 LSQEDQLDLACCYIKQLRERI 22 (136)
Q Consensus 2 ~s~~d~l~eA~~YIk~Lq~kv 22 (136)
+|-.+.|+.|+.||++||+++
T Consensus 41 ~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 41 PSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp SCTTHHHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999865
No 7
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.42 E-value=0.1 Score=38.28 Aligned_cols=60 Identities=13% Similarity=0.199 Sum_probs=48.6
Q ss_pred EEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 71 LISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 71 l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
.+++.++++.+++|-.+|.+.|+++++++.....++.|-++...... .+...|.+.|.++
T Consensus 10 tv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~----~~~~~l~~~L~~~ 69 (192)
T 1u8s_A 10 TAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP----SNITRVETTLPLL 69 (192)
T ss_dssp EEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH----HHHHHHHHHHHHH
T ss_pred EEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC----CCHHHHHHHHHHH
Confidence 34566889999999999999999999999888888888888887642 3567777777654
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=95.33 E-value=0.024 Score=37.88 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=23.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032643 4 QEDQLDLACCYIKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 4 ~~d~l~eA~~YIk~Lq~kve~L~~kk~~l~ 33 (136)
--..|..|+.||++|+++..+|...++.|.
T Consensus 43 K~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 43 KVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999988777665543
No 9
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.79 E-value=0.17 Score=37.60 Aligned_cols=66 Identities=18% Similarity=0.142 Sum_probs=48.1
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 69 VVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 69 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
++.+++.++++.++.|-.+|.+.|+++++|.-....++.|=++..............+|.+.|..+
T Consensus 7 ~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~~~ 72 (195)
T 2nyi_A 7 VVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALPGF 72 (195)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHSTTC
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHHHH
Confidence 344567789999999999999999999999988888887777777654210001156677666543
No 10
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=94.02 E-value=0.25 Score=31.00 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=43.2
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 72 ISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 72 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
+...++++.|.+|..+|.+.|+++.+......++.....+..++.+ .-+...+-++|+++
T Consensus 10 v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~---~~~l~~l~~~L~~~ 69 (88)
T 2ko1_A 10 IVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN---TDKLTTLMDKLRKV 69 (88)
T ss_dssp EEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS---HHHHHHHHHHHTTC
T ss_pred EEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC---HHHHHHHHHHHhcC
Confidence 3455789999999999999999999999877666333444444432 24556777777654
No 11
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.56 E-value=0.55 Score=34.29 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=47.4
Q ss_pred EEEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeC--------CeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 68 EVVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIG--------DKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 68 eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--------~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
-++.+.+.++++.+++|..+|-+.|+++.++...+.+ ++.|=.+..... . +.+.+.|.+.|.++
T Consensus 94 ~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~--~-~~~~~~l~~~l~~~ 165 (192)
T 1u8s_A 94 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD--S-GCNLMQLQEEFDAL 165 (192)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC--T-TSCHHHHHHHHHHH
T ss_pred EEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC--C-CCCHHHHHHHHHHH
Confidence 3444566779999999999999999999999876543 344444554432 2 66889999998865
No 12
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=93.40 E-value=0.075 Score=37.25 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=22.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 032643 4 QEDQLDLACCYIKQLRERIDKLNRMK 29 (136)
Q Consensus 4 ~~d~l~eA~~YIk~Lq~kve~L~~kk 29 (136)
-..-|..|+.||++||+++++|.+..
T Consensus 65 Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 65 KGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999998753
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=93.19 E-value=0.044 Score=34.12 Aligned_cols=22 Identities=41% Similarity=0.437 Sum_probs=19.1
Q ss_pred CChhhhHHHHHHHHHHHHHHHH
Q 032643 2 LSQEDQLDLACCYIKQLRERID 23 (136)
Q Consensus 2 ~s~~d~l~eA~~YIk~Lq~kve 23 (136)
+|-.++|-.|++||.+||+.++
T Consensus 37 lSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 37 LSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHh
Confidence 5677899999999999998764
No 14
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=93.12 E-value=0.55 Score=34.73 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=46.9
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeC------CeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 69 VVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIG------DKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 69 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~------~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
++.++|.++++.+++|-.+|-+.|+++.++...+.+ ++.|=.+..... . ..+ ..|.+.|.++
T Consensus 95 iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~--~-~~~-~~l~~~l~~~ 162 (195)
T 2nyi_A 95 ELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP--F-PLY-QEVVTALSRV 162 (195)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE--G-GGH-HHHHHHHHHH
T ss_pred EEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC--C-Ccc-HHHHHHHHHH
Confidence 444567789999999999999999999999987665 455555555543 2 456 8888888754
No 15
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=92.91 E-value=0.07 Score=34.73 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 032643 5 EDQLDLACCYIKQLRERIDKLN 26 (136)
Q Consensus 5 ~d~l~eA~~YIk~Lq~kve~L~ 26 (136)
...|..|+.||+.||+++++++
T Consensus 44 ~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 44 LLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999874
No 16
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=90.60 E-value=0.86 Score=36.87 Aligned_cols=64 Identities=9% Similarity=0.167 Sum_probs=52.6
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 69 VVLISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 69 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
|+.++|.++++..+.|-..|-+.|+++++++.+..++++|=.+++.+... .++.+.|.+.|..+
T Consensus 14 ~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~--~~~~~~l~~~l~~~ 77 (415)
T 3p96_A 14 LITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD--VADGPALRHDVEAA 77 (415)
T ss_dssp EEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH--HHTSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC--cCCHHHHHHHHHHH
Confidence 33456778999999999999999999999999999999999898888653 24557888877654
No 17
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=89.82 E-value=0.58 Score=26.87 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 5 EDQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 5 ~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
+.++.|--|||++|.+|--+|+.-|+-|+.
T Consensus 2 sntvkelknyiqeleernaelknlkehlkf 31 (46)
T 3he4_B 2 SNTVKELKNYIQELEERNAELKNLKEHLKF 31 (46)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 457888899999999999999887776654
No 18
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=89.21 E-value=0.1 Score=33.31 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=17.8
Q ss_pred CChhhhHHHHHHHHHHHHHHHH
Q 032643 2 LSQEDQLDLACCYIKQLRERID 23 (136)
Q Consensus 2 ~s~~d~l~eA~~YIk~Lq~kve 23 (136)
+|=.+.|-.|++||.+||+.++
T Consensus 46 lSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 46 LPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHHHc
Confidence 4556789999999999998653
No 19
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=88.42 E-value=0.53 Score=31.20 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 032643 7 QLDLACCYIKQLRERIDKLNRMKG 30 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~~kk~ 30 (136)
-|..|+.||++||+...++.+.-.
T Consensus 33 IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 33 ILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477899999999998888876444
No 20
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=88.13 E-value=0.089 Score=32.71 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=16.8
Q ss_pred ChhhhHHHHHHHHHHHHHHH
Q 032643 3 SQEDQLDLACCYIKQLRERI 22 (136)
Q Consensus 3 s~~d~l~eA~~YIk~Lq~kv 22 (136)
+-.+.|..|+.||++||++.
T Consensus 44 ~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 44 SKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CTTTTTTTTHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 55678899999999999764
No 21
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=87.18 E-value=2.7 Score=33.41 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=46.2
Q ss_pred EEEecCCCcccHHHHHHHHHHcCceEEEeEEEE--eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 70 VLISGVQRNFMLYEVISILEEEGAQVVSASFST--IGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 70 ~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~--~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
..++|.++++...+|-..|-+.|+++++++... ..++.|=.+.+...-+...++.+.|.+.|.++
T Consensus 13 Ltv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~l 79 (292)
T 3lou_A 13 LTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEPI 79 (292)
T ss_dssp EEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHHH
Confidence 345667889999999999999999999999773 45566555554443112247788899888654
No 22
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=86.85 E-value=2.8 Score=33.48 Aligned_cols=64 Identities=14% Similarity=0.115 Sum_probs=47.3
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEEe--CCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 69 VVLISGVQRNFMLYEVISILEEEGAQVVSASFSTI--GDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 69 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~--~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
|..++|.++++...+|-..|-+.|+++++++.... +++.|=.+.+.. +...++.+.|.+.|..+
T Consensus 24 iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~--~~~~~~~~~L~~~l~~l 89 (302)
T 3o1l_A 24 RLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRA--DTLPFDLDGFREAFTPI 89 (302)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEG--GGSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEec--CCCCCCHHHHHHHHHHH
Confidence 34456778999999999999999999999998754 455554444443 33247788999888654
No 23
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=86.58 E-value=3 Score=32.96 Aligned_cols=62 Identities=11% Similarity=-0.038 Sum_probs=46.7
Q ss_pred EEEecCCCcccHHHHHHHHHHcCceEEEeEEEE--eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 70 VLISGVQRNFMLYEVISILEEEGAQVVSASFST--IGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 70 ~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~--~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
..+++.++++...+|-..|-+.|+++++.+... ..++.|=.+.+.. +. .++.+.|.+.|.++
T Consensus 11 Ltv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~--~~-~~~~~~L~~~f~~l 74 (286)
T 3n0v_A 11 LTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ--PD-DFDEAGFRAGLAER 74 (286)
T ss_dssp EEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC--CS-SCCHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec--CC-CCCHHHHHHHHHHH
Confidence 345677889999999999999999999999773 4455554444443 33 57889999888754
No 24
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=86.20 E-value=3.5 Score=32.66 Aligned_cols=64 Identities=19% Similarity=0.141 Sum_probs=48.1
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEE--EeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 69 VVLISGVQRNFMLYEVISILEEEGAQVVSASFS--TIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 69 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s--~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
|..++|.++++...+|-..|-+.|+++++.+.. ..+++.|=.+.+.+.. ..++.+.|.+.|..+
T Consensus 8 iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~--~~~~~~~L~~~f~~l 73 (288)
T 3obi_A 8 VLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAA--KVIPLASLRTGFGVI 73 (288)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESS--CCCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCC--CCCCHHHHHHHHHHH
Confidence 334567789999999999999999999999975 3456666556665543 247788999888654
No 25
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=85.77 E-value=1.8 Score=33.55 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=40.9
Q ss_pred ecCCCcccHHHHHHHHHHcCceEEEeEEEEeC----CeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 73 SGVQRNFMLYEVISILEEEGAQVVSASFSTIG----DKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 73 s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~----~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
...++++.|++|+.+|-+++.++.+.+.+... +...+ ++.++.+ . ++.++-++|+++
T Consensus 10 ~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~-I~IEV~d---~-~Le~LL~kLrkI 70 (223)
T 1y7p_A 10 IAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKAL-IYFEIEG---G-DFEKILERVKTF 70 (223)
T ss_dssp EEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEE-EEEEECS---S-CHHHHHHHHHTC
T ss_pred EEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEE-EEEEECC---C-CHHHHHHHHhCC
Confidence 45578999999999999999999999988754 43333 3377764 2 889999999875
No 26
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=82.53 E-value=0.86 Score=29.20 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 032643 5 EDQLDLACCYIKQLRERIDKL 25 (136)
Q Consensus 5 ~d~l~eA~~YIk~Lq~kve~L 25 (136)
.+-|..|+.||++||++..=|
T Consensus 44 ~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 44 STVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhHH
Confidence 456889999999999987544
No 27
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=80.72 E-value=2.5 Score=30.95 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=42.3
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 75 VQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 75 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
.++++.|++|..+|.+.|+++.+.+.....+.-+..|...+... --..+.+..+|+++++
T Consensus 11 ~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d--~~~leqI~kqL~Kl~d 70 (164)
T 2f1f_A 11 ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGD--EKVLEQIEKQLHKLVD 70 (164)
T ss_dssp ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESC--HHHHHHHHHHHHHSTT
T ss_pred eCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEecc--HHHHHHHHHHHcCCCC
Confidence 47899999999999999999999888654432234444444322 2345788888887754
No 28
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=80.38 E-value=4.5 Score=27.90 Aligned_cols=57 Identities=11% Similarity=0.051 Sum_probs=39.5
Q ss_pred EecCCCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 72 ISGVQRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 72 ~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
+.+.+++++|.+|+++|-+.|+++.+...... +. +...+.... .-+...+.++|+++
T Consensus 5 v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~----i~~~~~~~~-~~~~~~L~~~l~~i 61 (190)
T 2jhe_A 5 VFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR----IYLNFAELE-FESFSSLMAEIRRI 61 (190)
T ss_dssp EEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE----EEEEECCCC-HHHHHHHHHHHHHS
T ss_pred EEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE----EEEEEEeCC-HHHHHHHHHHHHcC
Confidence 35668899999999999999999999998654 33 334443211 23356666666654
No 29
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=79.04 E-value=1.4 Score=29.98 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=18.6
Q ss_pred CChhhhHHHHHHHHHHHHHHHHH
Q 032643 2 LSQEDQLDLACCYIKQLRERIDK 24 (136)
Q Consensus 2 ~s~~d~l~eA~~YIk~Lq~kve~ 24 (136)
||=-++|--|++||.+||+-++.
T Consensus 60 LSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 60 VSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHhc
Confidence 44557899999999999987754
No 30
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=77.56 E-value=3.4 Score=30.30 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=41.6
Q ss_pred CCCcccHHHHHHHHHHcCceEEEeEEEEeC--CeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 75 VQRNFMLYEVISILEEEGAQVVSASFSTIG--DKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 75 ~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
-++++.|++|..+|.+.|+++.+.+..... +..--+|..+ .. --..+.+...|.++++
T Consensus 12 eNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~--~d--~~~leql~kQL~Kl~d 71 (165)
T 2pc6_A 12 ENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN--GP--DEIVEQITKQLNKLIE 71 (165)
T ss_dssp ECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE--EC--HHHHHHHHHHHHHSTT
T ss_pred eCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe--cc--HHHHHHHHHHhcCCCC
Confidence 368999999999999999999998876444 4444455554 22 2344778888887764
No 31
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=74.66 E-value=3.7 Score=22.91 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 032643 15 IKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l~ 33 (136)
.++|+.|||+|..++..|.
T Consensus 3 MnQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 4788889998888876654
No 32
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=74.23 E-value=15 Score=28.98 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=42.1
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEEEeEEEE--eCCeEEEEEEEEeeccCcccchHHHHHHHhhh
Q 032643 69 VVLISGVQRNFMLYEVISILEEEGAQVVSASFST--IGDKIFHTVRAQAKISRLGVETSIACQRLHDL 134 (136)
Q Consensus 69 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~s~--~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~ 134 (136)
|..++|.++++...+|-..|-+.|+++++++... .++++|=.+ ++.... .+.+.|.+.|..+
T Consensus 9 vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~--~~~~~~--~~~~~L~~~f~~l 72 (287)
T 3nrb_A 9 VLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRV--SVEIPV--AGVNDFNSAFGKV 72 (287)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEE--EEECCC-----CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEE--EEEcCC--CCHHHHHHHHHHH
Confidence 3345667889999999999999999999999753 345555434 443322 3455888887654
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=72.98 E-value=5.2 Score=26.24 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032643 5 EDQLDLACCYIKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 5 ~d~l~eA~~YIk~Lq~kve~L~~kk~~l~ 33 (136)
-..|.+|+.-|.-||..|++|++|...|.
T Consensus 12 E~KIq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 12 EAKVQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999876653
No 34
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=72.69 E-value=5.7 Score=20.30 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032643 9 DLACCYIKQLRERIDKLNRM 28 (136)
Q Consensus 9 ~eA~~YIk~Lq~kve~L~~k 28 (136)
+|--+-..+||+++.+|.+|
T Consensus 4 delykeledlqerlrklrkk 23 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888765
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=70.92 E-value=11 Score=28.29 Aligned_cols=57 Identities=9% Similarity=0.091 Sum_probs=41.1
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEeC--CeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTIG--DKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~--~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
++++.|++|..+|.+.|+++.+-+..... +..-.||...-. . -..+.+...|.++++
T Consensus 38 N~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--e--~~ieqL~kQL~KLid 96 (193)
T 2fgc_A 38 NKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--D--KTIEQIEKQAYKLVE 96 (193)
T ss_dssp CCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--T--THHHHHHHHHTTSTT
T ss_pred CCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--H--HHHHHHHHHhcCcCc
Confidence 68999999999999999999987775433 444445555432 2 234778888888764
No 36
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=70.21 E-value=6.9 Score=19.84 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 032643 7 QLDLACCYIKQLRERIDKLNR 27 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~~ 27 (136)
|+++|++| ||.+|+...-
T Consensus 1 qisqaiky---lqnnikgfii 18 (26)
T 1m45_B 1 QISQAIKY---LQNNIKGFII 18 (26)
T ss_dssp CHHHHHHH---HHHHHHHHHH
T ss_pred CHhHHHHH---HHhccceEEE
Confidence 46677555 7888887654
No 37
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=69.50 E-value=5.4 Score=21.81 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 032643 15 IKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l~ 33 (136)
.++|..|||+|-.++..|.
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 4678888888877775553
No 38
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=66.52 E-value=6.7 Score=21.57 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 032643 15 IKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l~~ 34 (136)
..+|..||++|-.++++|..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~ 22 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEX 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 46899999999988877643
No 39
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=66.46 E-value=6.1 Score=25.08 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032643 12 CCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~~l 32 (136)
-.||++|+.+|++|...-+.+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999998765544
No 40
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=66.17 E-value=7.1 Score=19.78 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 032643 7 QLDLACCYIKQLRERIDK 24 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~ 24 (136)
-+-||-+|..+|..|++.
T Consensus 5 gliearkyleqlhrklkn 22 (26)
T 1xkm_B 5 GLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 356899999999988764
No 41
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=65.31 E-value=7.3 Score=21.27 Aligned_cols=19 Identities=5% Similarity=0.202 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 032643 15 IKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l~ 33 (136)
.++|..|||+|-.++..|-
T Consensus 2 MnQLEdKvEeLl~~~~~Le 20 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXE 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHH
Confidence 4688999999988886653
No 42
>1r48_A Proline/betaine transporter; osmosensor, cytoplasmic, coiled-coil, antiparallel, two- stranded homodimer, transport protein; NMR {Synthetic} SCOP: h.4.15.1
Probab=64.28 E-value=8.8 Score=20.87 Aligned_cols=24 Identities=13% Similarity=0.187 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 12 CCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
-.+|..+.+.+.+|..||+.|+..
T Consensus 7 e~~iedi~~ei~~l~~kr~~l~~q 30 (33)
T 1r48_A 7 EQKIDDIDHEIADLQAKRTRLVQQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHc
Confidence 468899999999999999987653
No 43
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=63.51 E-value=15 Score=20.54 Aligned_cols=26 Identities=27% Similarity=0.208 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032643 7 QLDLACCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~~kk~~l 32 (136)
++.|.=.-|-.|+.|++.|++.|-+|
T Consensus 9 TLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 9 SLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677778899999999999988765
No 44
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=61.39 E-value=5.6 Score=26.16 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=17.5
Q ss_pred ChhhhHHHHHHHHHHHHHHH
Q 032643 3 SQEDQLDLACCYIKQLRERI 22 (136)
Q Consensus 3 s~~d~l~eA~~YIk~Lq~kv 22 (136)
+.|-++++|++|++..|.+-
T Consensus 5 ~~~~~~~~A~~YvnkVK~rF 24 (89)
T 1g1e_B 5 NQPVEFNHAINYVNKIKNRF 24 (89)
T ss_dssp CCTHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 45778999999999999984
No 45
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=60.77 E-value=5.7 Score=25.87 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=18.6
Q ss_pred ChhhhHHHHHHHHHHHHHHHHH
Q 032643 3 SQEDQLDLACCYIKQLRERIDK 24 (136)
Q Consensus 3 s~~d~l~eA~~YIk~Lq~kve~ 24 (136)
+.|-.+++|++|++..|.+-..
T Consensus 2 ~~~~~~~~A~~yv~kVK~rF~~ 23 (85)
T 1e91_A 2 SDSVEFNNAISYVNKIKTRFLD 23 (85)
T ss_dssp CSCHHHHHHHHHHHHHHHHTSS
T ss_pred CCCccHHHHHHHHHHHHHHHhc
Confidence 4577899999999999988644
No 46
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=58.35 E-value=40 Score=22.79 Aligned_cols=50 Identities=14% Similarity=0.080 Sum_probs=34.1
Q ss_pred CCcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhh
Q 032643 76 QRNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHD 133 (136)
Q Consensus 76 ~~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~ 133 (136)
++|+.+.+++++|.++|+.+.+..++.-+++....|.. . |..+..+-|.+
T Consensus 81 d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~--~------d~~~A~~~L~~ 130 (144)
T 2f06_A 81 NVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP--S------NMDKCIEVLKE 130 (144)
T ss_dssp SSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE--S------CHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe--C------CHHHHHHHHHH
Confidence 58999999999999999999765443245554444433 2 55666665554
No 47
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=58.09 E-value=11 Score=22.85 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 12 CCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
-.||.+|+.+++.|..+.++|...
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~ 44 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAST 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999988877653
No 48
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=55.71 E-value=14 Score=20.30 Aligned_cols=19 Identities=5% Similarity=0.099 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 032643 15 IKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l~ 33 (136)
.++|..|||+|-.++..|-
T Consensus 3 MnQLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 4678888888888876653
No 49
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=55.70 E-value=14 Score=22.74 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 032643 12 CCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
..||.+|+.+|+.|+.+..+|..
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999988877754
No 50
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=55.39 E-value=8.1 Score=21.12 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 032643 16 KQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 16 k~Lq~kve~L~~kk~~l~ 33 (136)
.+|..||++|-.++.+|.
T Consensus 3 ~QLE~kVEeLl~~n~~Le 20 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLE 20 (33)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHH
Confidence 578889999888876664
No 51
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=54.69 E-value=16 Score=20.99 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 032643 13 CYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 13 ~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
.|..+|..|+++|..+-.+|-..
T Consensus 3 aYl~eLE~r~k~le~~naeLEer 25 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEER 25 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999887777543
No 52
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.51 E-value=14 Score=22.56 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 032643 12 CCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
-.||.+|+.+++.|+.+.+.|..
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999988777754
No 53
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=54.21 E-value=13 Score=20.33 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 032643 15 IKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l~ 33 (136)
.++|..|||+|-.++..|.
T Consensus 3 MnQLEdkVEeLl~~~~~Le 21 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLA 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 3688889999888876654
No 54
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=53.37 E-value=15 Score=21.88 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 032643 12 CCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
-.||..|+++|+.|+..=+.|..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999877555544
No 55
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=53.27 E-value=14 Score=20.52 Aligned_cols=18 Identities=17% Similarity=0.309 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032643 15 IKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l 32 (136)
.++|..||++|-.++..|
T Consensus 3 MnQLE~kVEeLl~~~~~L 20 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHL 20 (36)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHH
Confidence 367888888888777655
No 56
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=53.22 E-value=6.3 Score=25.06 Aligned_cols=16 Identities=31% Similarity=0.285 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHH
Q 032643 5 EDQLDLACCYIKQLRE 20 (136)
Q Consensus 5 ~d~l~eA~~YIk~Lq~ 20 (136)
.+-|..|+.||+.||-
T Consensus 48 asIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 48 LTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4568899999999863
No 57
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=52.55 E-value=9.1 Score=26.02 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=18.3
Q ss_pred ChhhhHHHHHHHHHHHHHHHHH
Q 032643 3 SQEDQLDLACCYIKQLRERIDK 24 (136)
Q Consensus 3 s~~d~l~eA~~YIk~Lq~kve~ 24 (136)
+.|-.+++|++|++..|.+-..
T Consensus 2 ~~~~~~~dA~~YvnkVK~rF~d 23 (105)
T 2f05_A 2 SDSVEFNNAISYVNKIKTRFLD 23 (105)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCcHHHHHHHHHHHHHHHcc
Confidence 4577899999999999998543
No 58
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=50.95 E-value=18 Score=19.84 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032643 15 IKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l 32 (136)
.++|..|||+|-.++..|
T Consensus 3 MnQledKvEel~~~~~~l 20 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHN 20 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHH
Confidence 467888888888877544
No 59
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=49.42 E-value=18 Score=19.86 Aligned_cols=19 Identities=11% Similarity=0.333 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 032643 15 IKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l~ 33 (136)
.++|..|||+|-.++..|-
T Consensus 3 MnQLEdKvEeLl~~~~~L~ 21 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHIC 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHH
Confidence 4688899999988876653
No 60
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=48.11 E-value=20 Score=21.52 Aligned_cols=22 Identities=18% Similarity=0.533 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032643 13 CYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 13 ~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
.||.+|+.+++.|..+-..|..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~ 43 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQS 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999888777654
No 61
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=47.86 E-value=23 Score=21.11 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032643 13 CYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 13 ~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
.|+.+|+.+|+.|...-..|..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999987666644
No 62
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=47.71 E-value=74 Score=22.76 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEEEeeccCcccchHHHHHHHhhhhC
Q 032643 81 LYEVISILEEEGAQVVSASFSTIGDKIFHTVRAQAKISRLGVETSIACQRLHDLVD 136 (136)
Q Consensus 81 Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~qv~~~~~~~d~~~l~erL~~~i~ 136 (136)
+.++++-+-+.|++++...+..-+.+.+-.|...-.++-.-=||+++++.|-.++|
T Consensus 14 v~~li~p~~~~g~eLvdve~~~~g~~~~LrV~ID~~~gi~lddC~~vSr~is~~LD 69 (164)
T 1ib8_A 14 VREVVEPVIEAPFELVDIEYGKIGSDMILSIFVDKPEGITLNDTADLTEMISPVLD 69 (164)
T ss_dssp HHHHHHHHHCSSSEEEEEEEEEETTEEEEEEEEECSSCCCHHHHHHHHHHHGGGTT
T ss_pred HHHHHHHHHcCCcEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 44444444434999999999988877665665544333223468899998887764
No 63
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=46.02 E-value=20 Score=23.97 Aligned_cols=22 Identities=32% Similarity=0.160 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 032643 7 QLDLACCYIKQLRERIDKLNRM 28 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~~k 28 (136)
-.+.|-.||+.|+++|+-|++.
T Consensus 64 f~e~a~e~vp~L~~~i~vle~~ 85 (94)
T 3fx7_A 64 FDEAAQEQIAWLKERIRVLEED 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHhHHHHHHHHHhHHH
Confidence 3567889999999999998753
No 64
>2d0o_B DIOL dehydratase-reactivating factor small subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.51.3.2 PDB: 2d0p_B
Probab=45.30 E-value=20 Score=25.13 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=21.1
Q ss_pred EEEEecCCCcccHHHHHHHHHHcCceEE
Q 032643 69 VVLISGVQRNFMLYEVISILEEEGAQVV 96 (136)
Q Consensus 69 V~l~s~~~~~~~Ls~vl~vLeEeGl~Vv 96 (136)
|++.+...+.-.|.+|+--+||||+-..
T Consensus 10 I~i~~~~~~~~~l~evl~GIEEEGip~~ 37 (125)
T 2d0o_B 10 IAIAVIDGCDGLWREVLLGIEEEGIPFR 37 (125)
T ss_dssp EEEEEETTCGGGGHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCcHHHHHHHHhhhcccCCCeE
Confidence 4444455566789999999999998554
No 65
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=44.31 E-value=24 Score=19.34 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032643 15 IKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l 32 (136)
.++|..|||+|-.++..|
T Consensus 3 M~QLEdKVEeLl~~n~~L 20 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHI 20 (34)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHH
Confidence 368888999988887655
No 66
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=43.16 E-value=20 Score=24.92 Aligned_cols=22 Identities=5% Similarity=0.157 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032643 13 CYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 13 ~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
+=|++||++|+.+++|.++|+.
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKe 25 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKE 25 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999988888765
No 67
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=41.24 E-value=8.4 Score=21.36 Aligned_cols=23 Identities=13% Similarity=0.218 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 032643 11 ACCYIKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 11 A~~YIk~Lq~kve~L~~kk~~l~ 33 (136)
+.+.|.-+|.||+.|+.+.|.+.
T Consensus 2 g~~~i~avKkKiq~lq~q~d~ae 24 (37)
T 3azd_A 2 GSSSLEAVRRKIRSLQEQNYHLE 24 (37)
T ss_dssp ----CHHHHHHHHHHHHHTTTTH
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 35677888899999988776553
No 68
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=41.20 E-value=21 Score=18.70 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH
Q 032643 16 KQLRERIDKLNRM 28 (136)
Q Consensus 16 k~Lq~kve~L~~k 28 (136)
|+|+.||++|-.|
T Consensus 16 kqlkakveellak 28 (31)
T 1p9i_A 16 KQLKAKVEELLAK 28 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666544
No 69
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=40.80 E-value=27 Score=22.98 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 032643 12 CCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
=.||.+|+.+|+.+...|.++..
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~ 77 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEV 77 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999999999998877643
No 70
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=40.40 E-value=26 Score=23.96 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032643 13 CYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 13 ~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
.||.+|+.+|+.+...|.+|..
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~l 41 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEV 41 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999988876643
No 71
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=36.95 E-value=21 Score=22.62 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 032643 6 DQLDLACCYIKQLRERIDK 24 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~ 24 (136)
-.+++|.+|++..|++-..
T Consensus 2 l~~~dA~~yl~~VK~~F~~ 20 (77)
T 2czy_A 2 VHVEDALTYLDQVKIRFGS 20 (77)
T ss_dssp CSHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHcc
Confidence 3688999999999988654
No 72
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=36.80 E-value=55 Score=20.66 Aligned_cols=30 Identities=13% Similarity=0.249 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 032643 6 DQLDLACCYIKQLRERIDKLNRMKGQAMKS 35 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~kk~~l~~~ 35 (136)
+...-.-..+..|++++++|+..++.|...
T Consensus 39 ~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 39 ESKGIVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445567777888888888877766543
No 73
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=36.56 E-value=61 Score=21.14 Aligned_cols=32 Identities=6% Similarity=0.079 Sum_probs=26.5
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 3 SQEDQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 3 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
++|..+-+-++-...|+++++.+..++..+..
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~ 34 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQL 34 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888999999999999888876654
No 74
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=36.49 E-value=24 Score=22.48 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032643 15 IKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l 32 (136)
|+.|+++|++|+.+=-+.
T Consensus 5 i~eLkkevkKL~~~A~q~ 22 (71)
T 2js5_A 5 AEELKAKLKKLNAQATAL 22 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 688999999998764443
No 75
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=36.18 E-value=25 Score=21.09 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032643 12 CCYIKQLRERIDKLNRM 28 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~k 28 (136)
-.||..|+++|+.|+..
T Consensus 48 ~~~~~~Le~ri~~Le~~ 64 (72)
T 2er8_A 48 RARNEAIEKRFKELTRT 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47999999999999866
No 76
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=36.04 E-value=38 Score=20.04 Aligned_cols=20 Identities=5% Similarity=0.247 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 032643 15 IKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l~~ 34 (136)
..+||+|++.|.++-+++..
T Consensus 28 ~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777777666666544
No 77
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Probab=34.79 E-value=36 Score=27.96 Aligned_cols=28 Identities=7% Similarity=0.006 Sum_probs=23.5
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 032643 1 MLSQEDQLDLACCYIKQLRERIDKLNRM 28 (136)
Q Consensus 1 ~~s~~d~l~eA~~YIk~Lq~kve~L~~k 28 (136)
|-++|..+-+++..++.||.++.+|+++
T Consensus 44 m~sLp~~v~~rI~aLk~lQ~E~~~le~e 71 (359)
T 3fs3_A 44 MTDLTEEQKETLKKLKLYQKEYYDYESK 71 (359)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999998887663
No 78
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=34.74 E-value=35 Score=20.73 Aligned_cols=18 Identities=17% Similarity=0.433 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 032643 15 IKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 15 Ik~Lq~kve~L~~kk~~l 32 (136)
|.+|+++-++|++|-++|
T Consensus 27 ieelkkkweelkkkieel 44 (67)
T 1lq7_A 27 IEELKKKWEELKKKIEEL 44 (67)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 566666666666665555
No 79
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=32.68 E-value=58 Score=20.72 Aligned_cols=26 Identities=12% Similarity=0.282 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 9 DLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 9 ~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
+=|++=|.++-.||+.|+.+|+-+..
T Consensus 17 nma~sEI~EID~Ki~nL~~mR~ivld 42 (72)
T 2xu6_A 17 NSTMSEIRDIEVEVENLRQKKEKLLG 42 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788899999999999999975543
No 80
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=31.87 E-value=35 Score=20.79 Aligned_cols=17 Identities=35% Similarity=0.540 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032643 12 CCYIKQLRERIDKLNRM 28 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~k 28 (136)
..||..|+++|+.|+..
T Consensus 57 ~~~~~~L~~ri~~LE~~ 73 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKT 73 (81)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47999999999999754
No 81
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=31.63 E-value=43 Score=21.09 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032643 12 CCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~~l 32 (136)
-.||..|+++|+.|+..-.++
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 369999999999998764444
No 82
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=31.30 E-value=69 Score=21.07 Aligned_cols=35 Identities=17% Similarity=0.145 Sum_probs=23.2
Q ss_pred Cc-ccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEE
Q 032643 77 RN-FMLYEVISILEEEGAQVVSASFSTIGDKIFHTV 111 (136)
Q Consensus 77 ~~-~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI 111 (136)
.+ ..++..|..||++|+-......+.-..+.+|.|
T Consensus 47 s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~L 82 (118)
T 2esh_A 47 GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRI 82 (118)
T ss_dssp CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEE
T ss_pred CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEE
Confidence 46 789999999999998433322221124777755
No 83
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=30.98 E-value=28 Score=21.92 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.7
Q ss_pred CcccHHHHHHHHHHcCceEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVS 97 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvs 97 (136)
++..+-+++..|++.|++|++
T Consensus 59 ~gid~d~l~~~L~~~g~~~~~ 79 (81)
T 2fi0_A 59 AGTPMDKIVRTLEANGYEVIG 79 (81)
T ss_dssp HTCCHHHHHHHHHHTTCEEEC
T ss_pred cCCCHHHHHHHHHHcCCEeeC
Confidence 678899999999999999973
No 84
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.94 E-value=58 Score=19.69 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032643 13 CYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 13 ~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
.++..|+.++++|..+.++|..
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~ 44 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKE 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888777754
No 85
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=30.23 E-value=97 Score=19.98 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=22.8
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeCC--eEEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIGD--KIFHTV 111 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~--r~fhtI 111 (136)
.+..++.+|..||++|+-..... ..++ +.+|.|
T Consensus 39 ~~~tly~~L~~Le~~GlI~~~~~--~~~~r~r~~y~L 73 (108)
T 3l7w_A 39 KESTLYPILKKLEKAGYLSTYTQ--EHQGRRRKYYHL 73 (108)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEE--EETTEEEEEEEE
T ss_pred CcChHHHHHHHHHHCCCeEEEee--cCCCCcceEEEE
Confidence 46789999999999998544322 2255 456654
No 86
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP}
Probab=30.03 E-value=19 Score=24.68 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 032643 8 LDLACCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 8 l~eA~~YIk~Lq~kve~L~~kk~~l 32 (136)
+.+|..+..+|+++.++|+++.+++
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~ 29 (184)
T 3p01_A 5 VQRAAETYDLLKQRTEELRRANAQM 29 (184)
T ss_dssp -CTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999998876654
No 87
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=29.85 E-value=1.8e+02 Score=23.37 Aligned_cols=35 Identities=9% Similarity=0.187 Sum_probs=24.7
Q ss_pred CeeEEEEEecCCCcccHHHHHHHHHHcCceEEEeEE
Q 032643 65 SSIEVVLISGVQRNFMLYEVISILEEEGAQVVSASF 100 (136)
Q Consensus 65 ~~~eV~l~s~~~~~~~Ls~vl~vLeEeGl~Vvsa~~ 100 (136)
.+.-|. ++|......+.++++.|++.|+.||..-+
T Consensus 256 ~~~Ril-~~G~p~~~~~~~l~~~le~~G~~vV~~~~ 290 (408)
T 3o3m_A 256 EKYRIM-MEGIPCWPYIGYKMKTLAKFGVNMTGSVY 290 (408)
T ss_dssp CCEEEE-EESCCCGGGHHHHHHHHHHHTEEEEECSG
T ss_pred CCceEE-EECCCCcccHHHHHHHHHhCCCEEEEEEc
Confidence 344553 35665345678999999999999996443
No 88
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.78 E-value=1.2e+02 Score=19.76 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=29.3
Q ss_pred CCeeEEEEEecCC--Cccc---HHHHHHHHHHcCceEEEeEEEEeCCeEEEEE
Q 032643 64 GSSIEVVLISGVQ--RNFM---LYEVISILEEEGAQVVSASFSTIGDKIFHTV 111 (136)
Q Consensus 64 ~~~~eV~l~s~~~--~~~~---Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI 111 (136)
++.+.|.+.++.+ .-|+ ..++++.|..-| +|+++++ +.|+.|=|+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~--~~d~~fVtF 56 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRF--VEDKMWVTF 56 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEE--CSSSEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEE--ecCCEEEEE
Confidence 3444555543322 3355 789999999999 8888865 446666554
No 89
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=28.12 E-value=45 Score=22.00 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=21.9
Q ss_pred EEEEEecCC--CcccHHHHHHHHHHcCceE
Q 032643 68 EVVLISGVQ--RNFMLYEVISILEEEGAQV 95 (136)
Q Consensus 68 eV~l~s~~~--~~~~Ls~vl~vLeEeGl~V 95 (136)
-|.++|+.+ ..++..++=+++++.|+++
T Consensus 5 kIll~Cg~G~sTS~l~~k~~~~~~~~gi~~ 34 (106)
T 1e2b_A 5 HIYLFSSAGMSTSLLVSKMRAQAEKYEVPV 34 (106)
T ss_dssp EEEEECSSSTTTHHHHHHHHHHHHHSCCSE
T ss_pred EEEEECCCchhHHHHHHHHHHHHHHCCCCe
Confidence 467778765 5577888999999999874
No 90
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=27.73 E-value=45 Score=26.98 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 032643 13 CYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 13 ~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
+|+++|++++++|+++.+++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~ 268 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALK 268 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999998887754
No 91
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=27.50 E-value=16 Score=21.45 Aligned_cols=15 Identities=13% Similarity=0.465 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHH
Q 032643 12 CCYIKQLRERIDKLN 26 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~ 26 (136)
-.||..|+++|+.|+
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 469999999998774
No 92
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=26.94 E-value=1.2e+02 Score=19.30 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHcCceEEEeE
Q 032643 79 FMLYEVISILEEEGAQVVSAS 99 (136)
Q Consensus 79 ~~Ls~vl~vLeEeGl~Vvsa~ 99 (136)
.++.+.|+..+|.|+|+|.-+
T Consensus 29 ~~~~eAl~~A~e~~LDLVevs 49 (78)
T 1tif_A 29 KSKQEALEIAARRNLDLVLVA 49 (78)
T ss_dssp EEHHHHHHHHHHTTCEEEEEE
T ss_pred ccHHHHHHHHHHcCCCEEEEC
Confidence 678999999999999999765
No 93
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=26.88 E-value=1.2e+02 Score=21.37 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=25.2
Q ss_pred cccHHHHHHHHHHcCceEEEeEEEEeCCeEEE
Q 032643 78 NFMLYEVISILEEEGAQVVSASFSTIGDKIFH 109 (136)
Q Consensus 78 ~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fh 109 (136)
.+...++...|++.|++++...+...+-.+|.
T Consensus 191 ~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~ 222 (234)
T 3dtn_A 191 DIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMF 222 (234)
T ss_dssp CCBHHHHHHHHHHTTCEEEEEEEEETTEEEEE
T ss_pred ccCHHHHHHHHHHcCCCceeeeeeecceeEEE
Confidence 45667888899999999999988776655554
No 94
>1nbw_B Glycerol dehydratase reactivase beta subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.51.3.2
Probab=26.71 E-value=49 Score=22.79 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=16.0
Q ss_pred CcccHHHHHHHHHHcCceE
Q 032643 77 RNFMLYEVISILEEEGAQV 95 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~V 95 (136)
+.-.|.+|+--+||||+-.
T Consensus 18 ~~~~l~~vl~GIEEEGip~ 36 (117)
T 1nbw_B 18 HAGAINELCWGLEEQGVPC 36 (117)
T ss_dssp CHHHHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHhhhhhcCCCe
Confidence 5567999999999999743
No 95
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=26.70 E-value=87 Score=21.71 Aligned_cols=28 Identities=11% Similarity=0.033 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 7 QLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
...-...++..|++++++|++.++.|..
T Consensus 96 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~ 123 (148)
T 3gpv_A 96 RLKLMKQQEANVLQLIQDTEKNLKKIQQ 123 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777788888888777766544
No 96
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=26.51 E-value=65 Score=21.82 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=23.9
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTV 111 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI 111 (136)
.++.++.+|.-||++|+-...-..+.-..|.+|.|
T Consensus 51 s~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~L 85 (123)
T 3ri2_A 51 EANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRT 85 (123)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEE
T ss_pred CcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEE
Confidence 57899999999999998433222211135778875
No 97
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=26.00 E-value=81 Score=20.96 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=22.8
Q ss_pred cccHHHHHHHHHHcCceEEEeEEEE-eCCeEEEEE
Q 032643 78 NFMLYEVISILEEEGAQVVSASFST-IGDKIFHTV 111 (136)
Q Consensus 78 ~~~Ls~vl~vLeEeGl~Vvsa~~s~-~~~r~fhtI 111 (136)
+..++..|..||++|+-.....-+. -..|.+|.|
T Consensus 47 ~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~l 81 (117)
T 3elk_A 47 QGSIYILLKTMKERGFVISESSVNEKGQQLTVYHI 81 (117)
T ss_dssp TTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEE
T ss_pred cchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEE
Confidence 5789999999999998443322111 234778865
No 98
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=25.88 E-value=1.1e+02 Score=18.32 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 4 QEDQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 4 ~~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
-.|-+++....++.+.++++++.+++.++..
T Consensus 35 ~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~ 65 (115)
T 3zrx_A 35 RADEIGILAKSIERLRRSLKQLADDRTLLMA 65 (115)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999999999998877665544
No 99
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=25.67 E-value=1.3e+02 Score=19.85 Aligned_cols=32 Identities=6% Similarity=0.082 Sum_probs=24.8
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVR 112 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~ 112 (136)
.+.-+|..|..|++.|+-... ..|.+++|++-
T Consensus 72 s~stvs~~L~~Le~~Glv~~~----~~gr~~~y~l~ 103 (122)
T 1r1t_A 72 SESAVSHQLRSLRNLRLVSYR----KQGRHVYYQLQ 103 (122)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE----EETTEEEEEES
T ss_pred CHHHHHHHHHHHHHCCCeEEE----EeCCEEEEEEC
Confidence 467899999999999986543 35777888764
No 100
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=25.53 E-value=1e+02 Score=20.96 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 032643 8 LDLACCYIKQLRERIDKLNRMKGQAMKSI 36 (136)
Q Consensus 8 l~eA~~YIk~Lq~kve~L~~kk~~l~~~~ 36 (136)
..-...++..|++++++|++.++.|....
T Consensus 81 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 81 KRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677888888888888887775543
No 101
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=25.48 E-value=1.1e+02 Score=18.35 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 5 EDQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 5 ~d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
+|-+++-.+-++.+.++++++.+++.++..
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~ 65 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSLKQLADDGTLLMA 65 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999888776654
No 102
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=25.00 E-value=98 Score=21.34 Aligned_cols=26 Identities=19% Similarity=0.129 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 9 DLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 9 ~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
.-....+..|++++++|++.++.|..
T Consensus 84 ~~L~~~~~~l~~~i~~L~~~~~~L~~ 109 (142)
T 3gp4_A 84 ELLKKQRIELKNRIDVMQEALDRLDF 109 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777777776665533
No 103
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=24.53 E-value=80 Score=16.17 Aligned_cols=14 Identities=21% Similarity=0.187 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHHH
Q 032643 7 QLDLACCYIKQLRE 20 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~ 20 (136)
.+-||+.|+.....
T Consensus 7 ~LLeAAeyLErrEr 20 (26)
T 1pd7_B 7 MLLEAADYLERRER 20 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46799999975443
No 104
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=24.45 E-value=97 Score=19.22 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=18.5
Q ss_pred hhHHHHHHH----HHHHHHHHHHHHHH
Q 032643 6 DQLDLACCY----IKQLRERIDKLNRM 28 (136)
Q Consensus 6 d~l~eA~~Y----Ik~Lq~kve~L~~k 28 (136)
+.+.+|-+| +++|..||+++.+|
T Consensus 23 ~~l~~AN~YTD~KF~qL~nKi~k~~kr 49 (64)
T 3lt7_A 23 KAIRESNQYTDHKFHQLENRLDKLEKR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 457788888 58899999988765
No 105
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=24.01 E-value=1.3e+02 Score=21.10 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHcCceEEEeEEEEeCC
Q 032643 79 FMLYEVISILEEEGAQVVSASFSTIGD 105 (136)
Q Consensus 79 ~~Ls~vl~vLeEeGl~Vvsa~~s~~~~ 105 (136)
+...++.+.|++.|++++.......+.
T Consensus 166 ~~~~~l~~~l~~~Gf~~~~~~~~~~~~ 192 (219)
T 1vlm_A 166 FSTEELMDLMRKAGFEEFKVVQTLFKH 192 (219)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEECCSC
T ss_pred CCHHHHHHHHHHCCCeEEEEecccCCC
Confidence 467899999999999999988765443
No 106
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=23.75 E-value=15 Score=23.57 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.3
Q ss_pred ChhhhHHHHHHHHHHHHHHHH
Q 032643 3 SQEDQLDLACCYIKQLRERID 23 (136)
Q Consensus 3 s~~d~l~eA~~YIk~Lq~kve 23 (136)
|.+-.+++|++|++..|.+-.
T Consensus 5 ~~~~~~~dA~~yl~~VK~rF~ 25 (80)
T 2cr7_A 5 SSGVHVEDALTYLDQVKIRFG 25 (80)
T ss_dssp CCCCCSCCSHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHHHc
Confidence 456678899999999998864
No 107
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=23.71 E-value=98 Score=21.38 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=22.9
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeC-CeEEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIG-DKIFHTV 111 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fhtI 111 (136)
.+..++.+|.-||++|+-........-+ .|.+|.|
T Consensus 75 s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~L 110 (145)
T 1xma_A 75 KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRI 110 (145)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEE
T ss_pred ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEE
Confidence 4678999999999999844333222122 4777754
No 108
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=23.26 E-value=1.2e+02 Score=20.14 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=23.0
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEE-eCCeEEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFST-IGDKIFHTV 111 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~-~~~r~fhtI 111 (136)
.+..++.+|.-||++|+-.....-+. -..|.+|.|
T Consensus 43 s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L 78 (117)
T 4esf_A 43 VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSL 78 (117)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEE
T ss_pred CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEE
Confidence 47789999999999998433322122 235888876
No 109
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=23.01 E-value=1.2e+02 Score=19.68 Aligned_cols=27 Identities=7% Similarity=0.007 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032643 7 QLDLACCYIKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~~kk~~l~ 33 (136)
.....-+.+..|++++++|+..++.+.
T Consensus 76 ~~~~l~~~~~~l~~~i~~l~~~~~~l~ 102 (109)
T 1r8d_A 76 RKAALQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666666655554
No 110
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=22.73 E-value=1.2e+02 Score=22.27 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=25.8
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 032643 3 SQEDQLDLACCYIKQLRERIDKLNRMKGQAM 33 (136)
Q Consensus 3 s~~d~l~eA~~YIk~Lq~kve~L~~kk~~l~ 33 (136)
|.+|-|...=.||+=|.++...+.++-++..
T Consensus 68 tt~~~i~~m~~yI~llrErea~lEqkVaeq~ 98 (169)
T 3k29_A 68 TTSDAILKMKAYIKVVAIQLSEEEEKVNKQK 98 (169)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999888765543
No 111
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=22.23 E-value=68 Score=20.77 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032643 12 CCYIKQLRERIDKLNRMKG 30 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~ 30 (136)
..=|..|+..++.|.+.||
T Consensus 7 ~~ei~eLk~~ve~lEkERD 25 (82)
T 3tq7_B 7 NQQLVDLKLTVDGLEKERD 25 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999997
No 112
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=22.18 E-value=1.4e+02 Score=19.63 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=23.1
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEE-EeCCeEEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFS-TIGDKIFHTV 111 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s-~~~~r~fhtI 111 (136)
.+..++.+|.-||++|+-.....-+ .-..|.+|.|
T Consensus 46 ~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~L 81 (116)
T 3f8b_A 46 NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRL 81 (116)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEE
T ss_pred CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEE
Confidence 4678999999999999844332211 2235788865
No 113
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=21.94 E-value=1.6e+02 Score=18.57 Aligned_cols=31 Identities=6% Similarity=0.088 Sum_probs=23.5
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTV 111 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI 111 (136)
.+..+++.|..|++.|+-... ..|.+++|.+
T Consensus 52 s~stvs~~L~~L~~~Glv~~~----~~gr~~~y~l 82 (106)
T 1r1u_A 52 SQSNVSHQLKLLKSVHLVKAK----RQGQSMIYSL 82 (106)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE----EETTEEEEEE
T ss_pred CHHHHHHHHHHHHHCCCeEEE----EeCCEEEEEE
Confidence 367899999999999986543 2467777765
No 114
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.69 E-value=1.2e+02 Score=20.61 Aligned_cols=24 Identities=13% Similarity=0.111 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 032643 7 QLDLACCYIKQLRERIDKLNRMKG 30 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~~kk~ 30 (136)
++.+-..=|.+|+.+++.|.+.||
T Consensus 19 ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555567777888888888887
No 115
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=21.58 E-value=1.1e+02 Score=23.49 Aligned_cols=29 Identities=28% Similarity=0.269 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 032643 6 DQLDLACCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
+.++..-+.|..++++++.|++.|+.|+.
T Consensus 176 ~~l~~ld~~i~~~~~~i~~l~~~k~~l~~ 204 (425)
T 1yf2_A 176 KILTKIDEGIEIIEKSINKLERIKKGLMH 204 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667788999999999998876654
No 116
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=21.41 E-value=1.4e+02 Score=19.46 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHhhh
Q 032643 7 QLDLACCYIKQL----RERIDKLNRMKGQAMK 34 (136)
Q Consensus 7 ~l~eA~~YIk~L----q~kve~L~~kk~~l~~ 34 (136)
+=|||+.+|... +..|++|++|-.++|.
T Consensus 58 tkdeaiehier~rl~ykreie~l~~~ekeime 89 (99)
T 3aei_A 58 TKDEAIEHIERSRLVYKREIEKLKKREKEIME 89 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999875 5678888876555544
No 117
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=21.20 E-value=1e+02 Score=20.40 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=23.2
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEe-CCeEEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTI-GDKIFHTV 111 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~-~~r~fhtI 111 (136)
.+..++.+|.-||++|+-...-.-+.. ..|.+|.|
T Consensus 45 s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~l 80 (116)
T 3hhh_A 45 VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRL 80 (116)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEE
T ss_pred CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEE
Confidence 477899999999999984332221212 24788865
No 118
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=21.20 E-value=1e+02 Score=22.20 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=23.6
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeC
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIG 104 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~ 104 (136)
....|.++.+.+.+.|..+.|.-.+.+.
T Consensus 73 S~~lL~~~~~~~~~~G~~i~NvD~tii~ 100 (152)
T 1iv3_A 73 SEVFLREAMRLVEARGAKLLQASLVLTL 100 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEEEe
Confidence 3468999999999999999999886543
No 119
>2djv_A Methionyl-tRNA synthetase; EC 6.1.1.10, WHEP-TRS domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.10 E-value=96 Score=19.68 Aligned_cols=20 Identities=5% Similarity=0.200 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 032643 7 QLDLACCYIKQLRERIDKLN 26 (136)
Q Consensus 7 ~l~eA~~YIk~Lq~kve~L~ 26 (136)
.++.|+.++..|+.+++.+.
T Consensus 41 ~i~~aV~~Ll~LKa~l~~~t 60 (79)
T 2djv_A 41 EVAAEVAKLLDLKKQLAVAE 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHhc
Confidence 34555555555555555553
No 120
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=20.99 E-value=84 Score=20.75 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=23.0
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeC-CeEEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIG-DKIFHTV 111 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~-~r~fhtI 111 (136)
.+..++.+|.-||++|+-.....-+..+ .|.+|.|
T Consensus 41 s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L 76 (115)
T 4esb_A 41 SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHI 76 (115)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEE
T ss_pred CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEE
Confidence 4678999999999999843322111112 3778865
No 121
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.96 E-value=1.6e+02 Score=19.15 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032643 6 DQLDLACCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~kk~~l 32 (136)
+.|+.=.+-|++|++.|+..+++=.+|
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555666666666665544444
No 122
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=20.94 E-value=1.1e+02 Score=22.21 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.9
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeC
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIG 104 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~ 104 (136)
....|.++.+.+.+.|..+.|.-.+.+.
T Consensus 79 S~~lL~~~~~~v~~~G~~i~NvD~tii~ 106 (162)
T 3re3_A 79 SKFFLAEIKKMLDKKQYSISNIDCTIIA 106 (162)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEEEc
Confidence 4568999999999999999999886544
No 123
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=20.80 E-value=1.2e+02 Score=22.13 Aligned_cols=28 Identities=14% Similarity=0.194 Sum_probs=23.7
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeC
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIG 104 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~ 104 (136)
....|.++.+.+.+.|..+.|.-.+.+.
T Consensus 74 S~~lL~~~~~~v~~~G~~i~NvD~tii~ 101 (160)
T 1gx1_A 74 SRELLREAWRRIQAKGYTLGNVDVTIIA 101 (160)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEEEc
Confidence 3468999999999999999999986544
No 124
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=20.65 E-value=1e+02 Score=18.85 Aligned_cols=21 Identities=10% Similarity=0.241 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 032643 12 CCYIKQLRERIDKLNRMKGQA 32 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~~l 32 (136)
-.||..|+++|+.|+..=..|
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 369999999999998654444
No 125
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=20.61 E-value=1.2e+02 Score=23.66 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 032643 6 DQLDLACCYIKQLRERIDKLNRMKGQAMKSI 36 (136)
Q Consensus 6 d~l~eA~~YIk~Lq~kve~L~~kk~~l~~~~ 36 (136)
+.++..-+.|..++++++.|++.|+.|+...
T Consensus 362 ~~l~~id~~i~~~~~~i~~L~~lk~~LL~~l 392 (406)
T 1ydx_A 362 KIVFLLDQKLDQYKKELSSLTVIRDTLLKKL 392 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778888888899998888887654
No 126
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=20.36 E-value=1.1e+02 Score=22.20 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=23.7
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeC
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIG 104 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~ 104 (136)
....|.++.+.+.+.|..+.|.-.+.+.
T Consensus 75 S~~lL~~~~~~v~~~G~~i~NvD~tii~ 102 (159)
T 1t0a_A 75 SRVLLRHCYALAKAKGFELGNLDVTIIA 102 (159)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEEEc
Confidence 3468999999999999999999986544
No 127
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=20.32 E-value=99 Score=18.24 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 032643 12 CCYIKQLRERIDKLNRMKGQAMK 34 (136)
Q Consensus 12 ~~YIk~Lq~kve~L~~kk~~l~~ 34 (136)
+.-|-.|...|+.|+++|+.-+.
T Consensus 5 ~EEILRLErEIE~Lqrqke~~~~ 27 (51)
T 2lw9_A 5 VEEILRLEKEIEDLQRMKEQQEL 27 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999999998875443
No 128
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=20.20 E-value=76 Score=16.54 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032643 10 LACCYIKQLRERIDKLNR 27 (136)
Q Consensus 10 eA~~YIk~Lq~kve~L~~ 27 (136)
+|..-++-|++|||+-++
T Consensus 3 ~~~sKm~lLKKKIEEQr~ 20 (29)
T 3lcn_C 3 DTASKMKLLKKKIEEQRE 20 (29)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 456678889999987643
No 129
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=20.20 E-value=1.8e+02 Score=18.67 Aligned_cols=33 Identities=15% Similarity=0.073 Sum_probs=25.4
Q ss_pred CcccHHHHHHHHHHcCceEEEeEEEEeCCeEEEEEEE
Q 032643 77 RNFMLYEVISILEEEGAQVVSASFSTIGDKIFHTVRA 113 (136)
Q Consensus 77 ~~~~Ls~vl~vLeEeGl~Vvsa~~s~~~~r~fhtI~~ 113 (136)
.+..+|.-|..|++.|+-... ..|.+.+|.+-.
T Consensus 44 s~~tvs~hL~~L~~~GlV~~~----~~gr~~~y~l~~ 76 (118)
T 3f6o_A 44 ALPSFMKHIHFLEDSGWIRTH----KQGRVRTCAIEK 76 (118)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE----EETTEEEEEECS
T ss_pred CHHHHHHHHHHHHHCCCeEEE----ecCCEEEEEECH
Confidence 467899999999999995442 347788887754
No 130
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=20.12 E-value=1.3e+02 Score=23.31 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=18.6
Q ss_pred cccHHHHHHHHHHcCceEEEeEEEE
Q 032643 78 NFMLYEVISILEEEGAQVVSASFST 102 (136)
Q Consensus 78 ~~~Ls~vl~vLeEeGl~Vvsa~~s~ 102 (136)
+-.|..|-.+|++.|+++.+|..+.
T Consensus 177 p~~~~~V~~aL~~~g~~~~~aei~~ 201 (249)
T 1lfp_A 177 PEELYEVKENLEKLGVPIEKAQITW 201 (249)
T ss_dssp GGGHHHHHHHHHTTTCCCSEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCeeeeeeEE
Confidence 3468888888888888877776653
Done!