BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032644
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.6 bits (65), Expect = 0.53, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 77
+R + RTEA ++ TEDL+++ L+ + + R ++ L+ + Q+VK + A
Sbjct: 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQ 59
+ ++ R + +L+Q T ++K+K+L+A+KN D ++
Sbjct: 551 KQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR 589
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74
++R+ EQLR +L+ + E+L+++ EL+A L + K A+++KLE +++A
Sbjct: 365 ILRLEEQLR----QLQAAKEELEQRQNELQAMMQRLEETKNMEAAERQKLEDEIRA 416
>pdb|3ERR|A Chain A, Microtubule Binding Domain From Mouse Cytoplasmic Dynein
As A Fusion With Seryl-Trna Synthetase
pdb|3ERR|B Chain B, Microtubule Binding Domain From Mouse Cytoplasmic Dynein
As A Fusion With Seryl-Trna Synthetase
Length = 536
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKEL 47
+D+++ +E LR E QKL+ +D Q+K++ L
Sbjct: 176 ADMLKRVEPLRNELQKLEDDAKDNQQKLEAL 206
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 5 GRPPKTDKATILSDV 19
G+PPKTDKAT++ ++
Sbjct: 97 GQPPKTDKATVVLNI 111
>pdb|3KF6|A Chain A, Crystal Structure Of S. Pombe Stn1-Ten1 Complex
Length = 159
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKE 66
+ R+E + + QS E+L++ E KA + +R +K K K
Sbjct: 109 INSFRSEVELIAQSFEELRDPNDEWKAWQKRMRYKKNLTKISKN 152
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 1 MLEPGRPPKTDKATILSDVVRMMEQLRTE 29
+LEPG +T ATIL ++++ ++ L +E
Sbjct: 95 LLEPGPLDETQIATILREILKGLDYLHSE 123
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 1 MLEPGRPPKTDKATILSDVVRMMEQLRTE 29
+LEPG +T ATIL ++++ ++ L +E
Sbjct: 110 LLEPGPLDETQIATILREILKGLDYLHSE 138
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 1 MLEPGRPPKTDKATILSDVVRMMEQLRTE 29
+LEPG +T ATIL ++++ ++ L +E
Sbjct: 115 LLEPGPLDETQIATILREILKGLDYLHSE 143
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 25.4 bits (54), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 1 MLEPGRPPKTDKATILSDVVRMMEQLRTE 29
+LEPG +T ATIL ++++ ++ L +E
Sbjct: 95 LLEPGPLDETQIATILREILKGLDYLHSE 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,441,667
Number of Sequences: 62578
Number of extensions: 102085
Number of successful extensions: 787
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 183
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)