Query 032644
Match_columns 136
No_of_seqs 116 out of 143
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 06:05:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 98.8 2.1E-08 7.1E-13 69.2 7.1 45 4-48 33-77 (82)
2 1nkp_B MAX protein, MYC proto- 98.5 2.6E-07 8.9E-12 63.1 6.2 35 7-41 33-67 (83)
3 1nkp_A C-MYC, MYC proto-oncoge 98.4 6.7E-07 2.3E-11 62.6 7.2 47 8-54 39-85 (88)
4 4ati_A MITF, microphthalmia-as 98.2 1E-06 3.5E-11 64.6 3.6 55 8-73 61-115 (118)
5 1nlw_A MAD protein, MAX dimeri 98.1 6.5E-06 2.2E-10 56.8 6.8 45 8-52 34-78 (80)
6 2jee_A YIIU; FTSZ, septum, coi 98.0 6.5E-05 2.2E-09 52.9 9.6 60 16-75 15-74 (81)
7 1hlo_A Protein (transcription 98.0 9.9E-06 3.4E-10 55.1 5.0 36 8-43 44-79 (80)
8 4h10_B Circadian locomoter out 97.5 7.3E-05 2.5E-09 51.0 3.9 30 4-33 35-64 (71)
9 4ath_A MITF, microphthalmia-as 97.3 0.002 6.7E-08 45.5 8.6 56 7-73 25-80 (83)
10 3hnw_A Uncharacterized protein 97.1 0.0023 7.7E-08 48.0 8.4 52 23-74 84-135 (138)
11 2jee_A YIIU; FTSZ, septum, coi 96.9 0.008 2.7E-07 42.2 8.9 55 20-74 5-66 (81)
12 1an4_A Protein (upstream stimu 96.6 0.00013 4.5E-09 47.5 -1.8 24 8-31 41-64 (65)
13 3hnw_A Uncharacterized protein 96.3 0.038 1.3E-06 41.3 9.6 51 24-74 78-128 (138)
14 4h10_A ARYL hydrocarbon recept 96.2 0.0023 8E-08 43.5 2.6 22 7-28 42-63 (73)
15 2yy0_A C-MYC-binding protein; 96.2 0.0084 2.9E-07 38.6 4.9 40 18-57 2-48 (53)
16 3he5_B Synzip2; heterodimeric 96.0 0.02 7E-07 36.7 5.9 42 25-66 7-48 (52)
17 1gd2_E Transcription factor PA 96.0 0.015 5.2E-07 39.4 5.5 39 22-74 30-68 (70)
18 2wt7_A Proto-oncogene protein 95.9 0.025 8.4E-07 36.9 6.1 36 37-72 25-60 (63)
19 3q8t_A Beclin-1; autophagy, AT 95.6 0.071 2.4E-06 37.6 8.1 48 24-71 7-54 (96)
20 1t2k_D Cyclic-AMP-dependent tr 95.6 0.056 1.9E-06 34.8 6.9 39 34-72 21-59 (61)
21 1a0a_A BHLH, protein (phosphat 95.5 0.0036 1.2E-07 41.2 0.8 23 8-30 39-61 (63)
22 1t2k_D Cyclic-AMP-dependent tr 95.2 0.058 2E-06 34.7 6.1 33 22-54 23-55 (61)
23 3tnu_B Keratin, type II cytosk 95.2 0.21 7.1E-06 36.2 9.6 60 15-74 37-107 (129)
24 2wt7_A Proto-oncogene protein 94.9 0.13 4.5E-06 33.4 7.1 34 22-55 24-57 (63)
25 3i00_A HIP-I, huntingtin-inter 94.8 0.14 4.6E-06 37.8 7.8 68 8-75 9-80 (120)
26 2v66_B Nuclear distribution pr 94.8 0.18 6.3E-06 36.9 8.4 52 23-74 5-60 (111)
27 4etp_A Kinesin-like protein KA 94.8 0.088 3E-06 44.8 7.7 53 23-75 5-57 (403)
28 1go4_E MAD1 (mitotic arrest de 94.8 0.057 1.9E-06 39.0 5.5 42 42-83 12-53 (100)
29 1jnm_A Proto-oncogene C-JUN; B 94.8 0.045 1.6E-06 35.4 4.5 37 35-71 22-58 (62)
30 3a7p_A Autophagy protein 16; c 94.7 0.32 1.1E-05 37.5 10.0 53 22-74 69-121 (152)
31 1ci6_A Transcription factor AT 94.7 0.16 5.5E-06 33.1 7.1 32 37-68 25-56 (63)
32 3tnu_A Keratin, type I cytoske 94.6 0.25 8.4E-06 35.9 8.7 59 16-74 40-109 (131)
33 3o0z_A RHO-associated protein 94.4 0.28 9.6E-06 38.3 9.1 55 20-74 89-147 (168)
34 3m9b_A Proteasome-associated A 94.4 0.044 1.5E-06 45.2 4.8 27 54-80 73-99 (251)
35 2fxo_A Myosin heavy chain, car 94.3 0.54 1.8E-05 34.1 9.8 60 15-74 63-122 (129)
36 2eqb_B RAB guanine nucleotide 94.3 0.24 8.3E-06 35.6 7.8 54 23-76 7-60 (97)
37 1ci6_A Transcription factor AT 94.2 0.37 1.3E-05 31.4 8.1 46 19-64 14-59 (63)
38 2oqq_A Transcription factor HY 94.1 0.18 6.3E-06 31.5 6.1 36 21-56 3-38 (42)
39 3nmd_A CGMP dependent protein 94.1 0.16 5.5E-06 34.9 6.3 48 22-69 20-67 (72)
40 2dfs_A Myosin-5A; myosin-V, in 94.1 0.24 8.1E-06 47.2 9.5 16 54-69 1028-1043(1080)
41 2v71_A Nuclear distribution pr 94.0 0.45 1.5E-05 37.6 9.6 52 22-73 57-112 (189)
42 1jnm_A Proto-oncogene C-JUN; B 94.0 0.068 2.3E-06 34.5 4.1 30 44-73 24-53 (62)
43 3bas_A Myosin heavy chain, str 94.0 0.41 1.4E-05 33.0 8.3 37 39-75 39-82 (89)
44 3m9b_A Proteasome-associated A 93.9 0.079 2.7E-06 43.7 5.2 41 30-70 56-96 (251)
45 3cve_A Homer protein homolog 1 93.9 0.3 1E-05 33.4 7.3 50 25-74 4-53 (72)
46 3oja_B Anopheles plasmodium-re 93.8 0.25 8.5E-06 41.9 8.3 11 64-74 566-576 (597)
47 3qh9_A Liprin-beta-2; coiled-c 93.7 0.72 2.5E-05 32.3 9.1 57 18-74 23-79 (81)
48 3u06_A Protein claret segregat 93.7 0.23 7.8E-06 42.6 7.9 52 24-75 6-57 (412)
49 1go4_E MAD1 (mitotic arrest de 93.4 0.23 7.8E-06 35.8 6.4 39 35-75 12-50 (100)
50 1gd2_E Transcription factor PA 93.4 0.29 1E-05 33.0 6.6 34 42-75 29-62 (70)
51 3m91_A Proteasome-associated A 93.4 0.39 1.3E-05 30.8 6.9 37 32-68 13-49 (51)
52 3s4r_A Vimentin; alpha-helix, 93.4 0.87 3E-05 31.7 9.3 34 41-74 55-88 (93)
53 1deb_A APC protein, adenomatou 93.4 0.56 1.9E-05 30.6 7.5 45 24-68 6-50 (54)
54 1ik9_A DNA repair protein XRCC 93.4 0.54 1.8E-05 37.3 9.1 19 25-43 136-154 (213)
55 3a7p_A Autophagy protein 16; c 93.3 0.65 2.2E-05 35.8 9.1 51 24-74 64-114 (152)
56 3vmx_A Voltage-gated hydrogen 93.2 0.25 8.7E-06 31.6 5.6 40 28-74 4-43 (48)
57 4b4t_K 26S protease regulatory 93.2 0.12 4E-06 44.5 5.3 49 32-80 46-94 (428)
58 3oja_A Leucine-rich immune mol 93.1 0.53 1.8E-05 39.2 9.1 49 24-72 424-472 (487)
59 3cvf_A Homer-3, homer protein 93.1 0.35 1.2E-05 33.5 6.7 49 26-74 11-59 (79)
60 3u5v_A Protein MAX, transcript 93.0 0.081 2.8E-06 35.9 3.4 24 11-34 42-65 (76)
61 2oto_A M protein; helical coil 93.0 0.52 1.8E-05 34.9 8.0 21 25-45 26-46 (155)
62 3o0z_A RHO-associated protein 93.0 0.9 3.1E-05 35.4 9.6 60 16-75 15-74 (168)
63 3he5_A Synzip1; heterodimeric 93.0 0.48 1.6E-05 30.0 6.6 24 21-44 3-26 (49)
64 1hjb_A Ccaat/enhancer binding 92.9 0.35 1.2E-05 33.9 6.5 38 38-75 32-69 (87)
65 3na7_A HP0958; flagellar bioge 92.8 0.56 1.9E-05 37.0 8.5 28 24-51 93-120 (256)
66 2fxo_A Myosin heavy chain, car 92.8 0.46 1.6E-05 34.5 7.4 44 31-74 72-115 (129)
67 3htk_A Structural maintenance 92.7 1.1 3.9E-05 28.0 8.9 53 22-74 6-58 (60)
68 3oja_B Anopheles plasmodium-re 92.6 0.88 3E-05 38.5 9.9 44 31-74 540-583 (597)
69 1nkp_B MAX protein, MYC proto- 92.6 0.23 7.7E-06 33.3 5.1 33 44-76 49-81 (83)
70 1dh3_A Transcription factor CR 92.5 0.11 3.6E-06 33.4 3.2 29 44-72 24-52 (55)
71 1zhc_A Hypothetical protein HP 92.3 0.23 7.8E-06 33.6 4.9 57 18-74 7-69 (76)
72 3na7_A HP0958; flagellar bioge 92.3 0.91 3.1E-05 35.8 9.1 45 26-70 37-81 (256)
73 3m91_A Proteasome-associated A 92.3 0.56 1.9E-05 30.0 6.4 39 23-61 11-49 (51)
74 3i00_A HIP-I, huntingtin-inter 92.2 2.2 7.4E-05 31.3 10.4 48 14-61 33-80 (120)
75 2wt7_B Transcription factor MA 91.9 0.49 1.7E-05 33.5 6.4 41 35-75 48-88 (90)
76 2oxj_A Hybrid alpha/beta pepti 91.8 0.27 9.2E-06 29.5 4.1 26 38-63 4-29 (34)
77 3ol1_A Vimentin; structural ge 91.8 1.4 4.7E-05 31.7 8.8 32 22-53 21-52 (119)
78 2dfs_A Myosin-5A; myosin-V, in 91.7 0.78 2.7E-05 43.6 9.3 21 55-75 1022-1042(1080)
79 2v71_A Nuclear distribution pr 91.6 1.4 4.7E-05 34.8 9.3 54 17-70 59-116 (189)
80 3oa7_A Head morphogenesis prot 91.5 0.7 2.4E-05 37.2 7.6 45 17-61 26-70 (206)
81 2yy0_A C-MYC-binding protein; 91.5 0.38 1.3E-05 30.7 4.9 29 44-72 21-49 (53)
82 1hjb_A Ccaat/enhancer binding 91.3 0.41 1.4E-05 33.5 5.4 43 32-74 33-75 (87)
83 1gu4_A CAAT/enhancer binding p 91.3 0.74 2.5E-05 31.6 6.5 41 36-76 30-70 (78)
84 1wle_A Seryl-tRNA synthetase; 91.2 1.1 3.6E-05 39.5 9.1 52 23-74 79-141 (501)
85 1gk6_A Vimentin; intermediate 91.2 0.58 2E-05 30.1 5.7 47 23-69 2-48 (59)
86 3v86_A De novo design helix; c 91.2 0.21 7.1E-06 28.3 3.0 25 23-47 2-26 (27)
87 4f3l_A Mclock, circadian locom 91.1 0.15 5.2E-06 41.3 3.4 26 4-29 39-64 (361)
88 2v66_B Nuclear distribution pr 90.9 2.3 8E-05 31.0 9.3 54 18-71 7-64 (111)
89 2dq0_A Seryl-tRNA synthetase; 90.8 2.2 7.6E-05 36.8 10.6 53 23-75 40-102 (455)
90 3s9g_A Protein hexim1; cyclin 90.8 1.6 5.4E-05 31.8 8.2 55 9-67 29-90 (104)
91 3oja_A Leucine-rich immune mol 90.7 1.2 4.3E-05 37.0 8.7 33 42-74 435-467 (487)
92 2dgc_A Protein (GCN4); basic d 90.7 0.35 1.2E-05 31.7 4.3 34 40-73 28-61 (63)
93 3q8t_A Beclin-1; autophagy, AT 90.7 1.3 4.5E-05 31.0 7.6 14 60-73 64-77 (96)
94 1wle_A Seryl-tRNA synthetase; 90.7 1.9 6.7E-05 37.8 10.3 57 19-75 82-149 (501)
95 2ocy_A RAB guanine nucleotide 90.6 1.1 3.8E-05 34.3 7.7 15 62-76 78-92 (154)
96 2w83_C C-JUN-amino-terminal ki 90.5 0.57 1.9E-05 32.6 5.3 32 43-74 38-69 (77)
97 3mq7_A Bone marrow stromal ant 90.4 2 6.7E-05 32.1 8.6 10 40-49 76-85 (121)
98 1lwu_C Fibrinogen gamma chain; 90.4 0.76 2.6E-05 38.6 7.1 56 19-74 3-58 (323)
99 3iv1_A Tumor susceptibility ge 90.3 2.8 9.5E-05 29.0 8.8 50 23-72 20-69 (78)
100 3bas_A Myosin heavy chain, str 90.2 1.4 4.7E-05 30.3 7.2 39 23-61 16-54 (89)
101 3qne_A Seryl-tRNA synthetase, 90.2 2.6 8.7E-05 37.2 10.6 51 24-74 43-103 (485)
102 3c3g_A Alpha/beta peptide with 90.2 0.51 1.7E-05 28.2 4.2 26 38-63 3-28 (33)
103 3trt_A Vimentin; cytoskeleton, 90.1 1.4 4.7E-05 28.9 6.9 25 44-68 51-75 (77)
104 3a2a_A Voltage-gated hydrogen 90.0 0.85 2.9E-05 30.2 5.6 41 27-74 10-50 (58)
105 3u1c_A Tropomyosin alpha-1 cha 89.8 3.4 0.00012 28.9 9.1 48 23-70 11-58 (101)
106 2w6a_A ARF GTPase-activating p 89.8 0.89 3E-05 30.5 5.7 36 27-62 26-61 (63)
107 2dgc_A Protein (GCN4); basic d 89.8 0.47 1.6E-05 31.0 4.3 25 23-47 32-56 (63)
108 2j5u_A MREC protein; bacterial 89.7 0.16 5.3E-06 40.8 2.3 18 33-50 24-41 (255)
109 3m48_A General control protein 89.6 0.55 1.9E-05 28.0 4.0 23 40-62 5-27 (33)
110 3u59_A Tropomyosin beta chain; 89.5 3.8 0.00013 28.4 9.1 50 23-72 11-60 (101)
111 2no2_A HIP-I, huntingtin-inter 89.4 3.3 0.00011 29.5 8.9 41 16-56 24-65 (107)
112 1ses_A Seryl-tRNA synthetase; 89.3 3.7 0.00013 35.0 10.7 54 22-75 36-97 (421)
113 1wt6_A Myotonin-protein kinase 89.3 2.8 9.7E-05 29.3 8.2 42 26-67 29-70 (81)
114 1nlw_A MAD protein, MAX dimeri 89.3 1.8 6.1E-05 29.3 7.1 36 8-47 31-66 (80)
115 1uix_A RHO-associated kinase; 89.2 2.8 9.6E-05 28.5 8.0 49 26-74 2-50 (71)
116 1l8d_A DNA double-strand break 89.2 0.97 3.3E-05 31.1 5.8 44 35-78 3-46 (112)
117 3c3f_A Alpha/beta peptide with 89.1 0.65 2.2E-05 27.8 4.1 26 38-63 4-29 (34)
118 1x8y_A Lamin A/C; structural p 89.1 1.9 6.6E-05 29.4 7.2 45 23-67 30-74 (86)
119 3htk_A Structural maintenance 89.0 2.8 9.6E-05 26.1 7.5 48 20-67 11-58 (60)
120 1gk4_A Vimentin; intermediate 89.0 1.8 6.3E-05 29.3 7.0 42 24-65 29-70 (84)
121 2wq1_A General control protein 88.8 0.73 2.5E-05 27.5 4.2 25 39-63 4-28 (33)
122 4f3l_B BMAL1B; BHLH, PAS, circ 88.8 0.24 8.1E-06 40.8 2.8 21 8-28 47-67 (387)
123 2v4h_A NF-kappa-B essential mo 88.4 4.9 0.00017 29.5 9.4 27 16-42 33-59 (110)
124 1gu4_A CAAT/enhancer binding p 88.2 0.85 2.9E-05 31.2 4.9 36 35-70 36-71 (78)
125 3swk_A Vimentin; cytoskeleton, 87.8 3.2 0.00011 28.4 7.7 25 24-48 3-27 (86)
126 1kd8_B GABH BLL, GCN4 acid bas 87.6 0.9 3.1E-05 27.5 4.1 24 39-62 5-28 (36)
127 3iv1_A Tumor susceptibility ge 87.4 3.6 0.00012 28.4 7.7 41 32-72 15-55 (78)
128 1uii_A Geminin; human, DNA rep 87.4 1.4 5E-05 30.9 5.7 13 54-66 58-70 (83)
129 1wlq_A Geminin; coiled-coil; 2 87.3 2.7 9.2E-05 29.5 7.1 27 36-62 39-65 (83)
130 3vkg_A Dynein heavy chain, cyt 87.1 2.6 8.9E-05 44.7 9.7 39 19-57 2026-2064(3245)
131 3trt_A Vimentin; cytoskeleton, 87.0 4.4 0.00015 26.3 7.7 55 21-75 9-75 (77)
132 1ic2_A Tropomyosin alpha chain 86.6 5.3 0.00018 26.6 8.2 45 24-68 9-53 (81)
133 4h22_A Leucine-rich repeat fli 86.6 4.7 0.00016 29.2 8.3 46 28-73 30-75 (103)
134 2wt7_B Transcription factor MA 86.5 1.7 5.9E-05 30.6 5.8 21 51-71 50-70 (90)
135 2xv5_A Lamin-A/C; structural p 86.5 4.2 0.00014 27.4 7.5 47 23-69 7-53 (74)
136 2bni_A General control protein 86.4 1.2 4.2E-05 26.6 4.2 26 38-63 4-29 (34)
137 1jcd_A Major outer membrane li 86.1 3.8 0.00013 26.2 6.8 43 23-72 6-48 (52)
138 2eqb_B RAB guanine nucleotide 86.0 7.6 0.00026 27.8 9.4 55 18-72 9-63 (97)
139 1uo4_A General control protein 85.9 1.3 4.6E-05 26.5 4.2 25 39-63 5-29 (34)
140 4h22_A Leucine-rich repeat fli 85.8 5.8 0.0002 28.7 8.4 52 23-74 32-83 (103)
141 1dh3_A Transcription factor CR 85.4 3.5 0.00012 26.1 6.3 30 21-50 22-51 (55)
142 2w83_C C-JUN-amino-terminal ki 85.4 7.3 0.00025 27.0 8.4 15 29-43 10-24 (77)
143 1ik9_A DNA repair protein XRCC 85.4 4.5 0.00015 31.9 8.4 49 23-71 127-175 (213)
144 1kd8_A GABH AIV, GCN4 acid bas 85.2 2.1 7.1E-05 25.9 4.8 26 39-64 5-30 (36)
145 3w03_C DNA repair protein XRCC 85.1 2.1 7E-05 33.7 6.2 40 17-56 140-180 (184)
146 1a93_B MAX protein, coiled coi 85.0 0.8 2.7E-05 27.4 2.9 18 28-45 14-31 (34)
147 3oa7_A Head morphogenesis prot 84.9 2.4 8.1E-05 34.1 6.5 43 29-71 31-73 (206)
148 3u1c_A Tropomyosin alpha-1 cha 84.8 8 0.00027 26.9 8.6 24 24-47 26-49 (101)
149 1lwu_C Fibrinogen gamma chain; 84.7 2.4 8.2E-05 35.6 6.8 49 27-75 4-52 (323)
150 3efg_A Protein SLYX homolog; x 84.6 2.1 7.2E-05 29.0 5.3 46 30-75 9-54 (78)
151 2zxx_A Geminin; coiled-coil, c 84.6 2.3 8E-05 29.5 5.6 28 36-63 35-62 (79)
152 4b4t_K 26S protease regulatory 84.6 1.6 5.4E-05 37.4 5.7 46 24-69 45-90 (428)
153 1gk4_A Vimentin; intermediate 84.5 7.3 0.00025 26.2 8.4 30 45-74 29-58 (84)
154 2hy6_A General control protein 84.4 1.7 6E-05 26.0 4.2 25 39-63 5-29 (34)
155 4etp_A Kinesin-like protein KA 84.4 2.1 7.3E-05 36.3 6.4 55 20-74 9-63 (403)
156 2zxx_A Geminin; coiled-coil, c 84.4 4.3 0.00015 28.1 6.9 34 16-49 29-62 (79)
157 3ibp_A Chromosome partition pr 84.3 4.9 0.00017 33.9 8.5 26 45-70 79-104 (302)
158 2ve7_A Kinetochore protein HEC 84.2 2.3 7.9E-05 34.9 6.4 29 29-57 186-214 (315)
159 1ic2_A Tropomyosin alpha chain 84.1 7.3 0.00025 25.9 7.9 26 25-50 24-49 (81)
160 2wg5_A General control protein 83.9 1 3.4E-05 32.0 3.6 26 54-79 12-37 (109)
161 2zvf_A Alanyl-tRNA synthetase; 83.9 3 0.0001 30.3 6.3 50 19-68 5-58 (171)
162 2xdj_A Uncharacterized protein 83.8 8.4 0.00029 26.5 8.2 43 22-64 21-63 (83)
163 3tnu_B Keratin, type II cytosk 83.8 4.3 0.00015 29.1 7.0 58 17-74 32-93 (129)
164 1s1c_X RHO-associated, coiled- 83.7 7.1 0.00024 26.5 7.6 48 25-74 3-50 (71)
165 2dq3_A Seryl-tRNA synthetase; 83.7 2.6 9E-05 35.8 6.7 53 23-75 39-101 (425)
166 1nkp_A C-MYC, MYC proto-oncoge 83.5 4.4 0.00015 27.7 6.6 29 40-68 57-85 (88)
167 3ghg_A Fibrinogen alpha chain; 83.2 2.4 8.2E-05 38.4 6.5 43 24-66 113-155 (562)
168 2xdj_A Uncharacterized protein 83.1 8.2 0.00028 26.5 7.9 39 36-74 21-59 (83)
169 2v4h_A NF-kappa-B essential mo 83.1 5.5 0.00019 29.2 7.4 33 23-55 26-58 (110)
170 3he4_B Synzip5; heterodimeric 83.1 5.5 0.00019 24.8 6.3 35 23-57 5-39 (46)
171 1l8d_A DNA double-strand break 83.0 4.4 0.00015 27.7 6.6 31 43-73 72-102 (112)
172 3u06_A Protein claret segregat 82.9 2.8 9.6E-05 35.8 6.6 52 23-74 12-63 (412)
173 4dzn_A Coiled-coil peptide CC- 82.8 2.8 9.5E-05 24.6 4.6 14 55-68 15-28 (33)
174 3tnu_A Keratin, type I cytoske 82.8 5 0.00017 28.9 7.0 56 19-74 36-95 (131)
175 4aj5_1 SKA3, spindle and kinet 82.7 10 0.00035 27.4 8.6 57 17-73 38-98 (101)
176 3rrk_A V-type ATPase 116 kDa s 82.7 3.1 0.00011 33.4 6.5 33 39-71 96-128 (357)
177 1dip_A Delta-sleep-inducing pe 82.5 1.2 3.9E-05 31.1 3.3 28 36-63 16-43 (78)
178 3m48_A General control protein 82.4 1.7 5.9E-05 25.8 3.6 24 47-70 5-28 (33)
179 2zqm_A Prefoldin beta subunit 82.4 5.2 0.00018 27.2 6.7 31 44-74 79-109 (117)
180 3u59_A Tropomyosin beta chain; 82.3 10 0.00034 26.2 8.4 32 20-51 22-53 (101)
181 3nmd_A CGMP dependent protein 82.3 6.6 0.00023 26.7 7.0 45 30-74 21-65 (72)
182 1wt6_A Myotonin-protein kinase 82.1 6.5 0.00022 27.4 7.0 55 21-75 14-71 (81)
183 4b4t_M 26S protease regulatory 82.1 1.5 5E-05 37.8 4.6 48 32-79 29-76 (434)
184 3lss_A Seryl-tRNA synthetase; 82.0 8.5 0.00029 33.8 9.5 25 24-48 47-71 (484)
185 3lss_A Seryl-tRNA synthetase; 81.9 6.8 0.00023 34.4 8.8 56 20-75 50-137 (484)
186 3rrk_A V-type ATPase 116 kDa s 80.8 10 0.00034 30.5 8.8 55 20-74 225-280 (357)
187 3ni0_A Bone marrow stromal ant 80.8 14 0.00046 26.7 9.6 60 16-75 27-86 (99)
188 2zqm_A Prefoldin beta subunit 80.7 7.3 0.00025 26.5 7.0 24 48-71 76-99 (117)
189 3a7o_A Autophagy protein 16; c 80.7 6.6 0.00022 27.1 6.6 6 24-29 21-26 (75)
190 2wvr_A Geminin; DNA replicatio 80.5 8.2 0.00028 31.1 8.1 35 35-69 115-149 (209)
191 2wvr_A Geminin; DNA replicatio 80.5 3.3 0.00011 33.3 5.8 41 28-68 115-158 (209)
192 4b4t_J 26S protease regulatory 80.5 2.4 8.2E-05 36.4 5.3 41 27-67 24-64 (405)
193 4aj5_K Spindle and kinetochore 80.4 9.9 0.00034 28.3 8.0 49 26-74 48-96 (123)
194 3mov_A Lamin-B1; LMNB1, B-type 80.3 7.6 0.00026 27.1 7.0 36 30-65 46-81 (95)
195 1uii_A Geminin; human, DNA rep 80.1 4.6 0.00016 28.3 5.8 28 36-63 47-74 (83)
196 1kd8_B GABH BLL, GCN4 acid bas 80.1 5.2 0.00018 24.1 5.2 26 23-48 3-28 (36)
197 1kd8_A GABH AIV, GCN4 acid bas 80.1 3.5 0.00012 24.9 4.4 27 23-49 3-29 (36)
198 2ve7_C Kinetochore protein NUF 80.1 1.6 5.3E-05 35.1 3.8 31 43-73 149-179 (250)
199 3vkg_A Dynein heavy chain, cyt 79.9 7.4 0.00025 41.5 9.5 59 16-74 2016-2074(3245)
200 2dq0_A Seryl-tRNA synthetase; 79.8 11 0.00038 32.4 9.3 56 21-76 31-96 (455)
201 1jcd_A Major outer membrane li 79.6 9.6 0.00033 24.3 7.4 22 24-45 14-35 (52)
202 1wlq_A Geminin; coiled-coil; 2 79.6 5.4 0.00018 27.9 6.0 29 16-44 33-61 (83)
203 1hs7_A Syntaxin VAM3; UP-and-D 79.3 5.5 0.00019 28.2 6.1 61 15-75 11-76 (97)
204 1fxk_C Protein (prefoldin); ar 79.3 7 0.00024 27.5 6.7 34 23-56 3-36 (133)
205 4emc_A Monopolin complex subun 79.1 6.9 0.00024 31.0 7.2 37 22-58 21-57 (190)
206 3mq9_A Bone marrow stromal ant 79.1 15 0.00052 30.2 9.6 20 53-72 447-466 (471)
207 1ses_A Seryl-tRNA synthetase; 79.0 11 0.00038 32.0 8.9 57 20-76 27-91 (421)
208 4emc_A Monopolin complex subun 78.8 13 0.00043 29.6 8.6 65 10-74 15-80 (190)
209 3swf_A CGMP-gated cation chann 78.8 9 0.00031 26.2 6.8 49 24-75 3-51 (74)
210 4dzn_A Coiled-coil peptide CC- 78.7 5 0.00017 23.5 4.7 22 29-50 3-24 (33)
211 4ani_A Protein GRPE; chaperone 78.5 4.3 0.00015 32.3 5.9 34 37-70 61-94 (213)
212 1dip_A Delta-sleep-inducing pe 78.3 1.4 4.6E-05 30.7 2.5 30 27-56 14-43 (78)
213 2e7s_A RAB guanine nucleotide 78.2 7.4 0.00025 29.3 6.8 48 28-75 25-79 (135)
214 2wg5_A General control protein 78.2 1.6 5.4E-05 30.9 3.0 27 44-70 9-35 (109)
215 1zbt_A RF-1, peptide chain rel 78.1 6.1 0.00021 34.0 7.1 64 14-79 53-117 (371)
216 3qne_A Seryl-tRNA synthetase, 78.1 13 0.00044 32.7 9.3 53 24-76 36-98 (485)
217 2p22_A Suppressor protein STP2 78.0 6.2 0.00021 30.6 6.5 37 34-70 48-84 (174)
218 4e61_A Protein BIM1; EB1-like 77.9 5.6 0.00019 28.9 5.8 28 24-51 14-41 (106)
219 1a93_B MAX protein, coiled coi 77.7 3.6 0.00012 24.5 4.0 25 43-67 8-32 (34)
220 2xv5_A Lamin-A/C; structural p 77.7 13 0.00046 24.9 8.0 50 25-74 2-51 (74)
221 3mud_A DNA repair protein XRCC 77.7 8.9 0.0003 30.0 7.3 31 15-45 129-159 (175)
222 1m1j_C Fibrinogen gamma chain; 77.6 8.3 0.00028 33.3 7.8 55 16-70 79-133 (409)
223 3d5a_X RF1, peptide chain rele 77.6 13 0.00046 31.6 9.0 77 3-79 21-99 (354)
224 1fxk_A Prefoldin; archaeal pro 77.5 3 0.0001 28.1 4.1 47 11-57 55-101 (107)
225 2r2v_A GCN4 leucine zipper; co 77.5 4.3 0.00015 24.3 4.2 25 39-63 5-29 (34)
226 2p22_A Suppressor protein STP2 77.5 8.2 0.00028 29.9 7.1 37 31-67 52-88 (174)
227 2xnx_M M protein, M1-BC1; cell 77.3 2.9 0.0001 32.0 4.4 19 25-43 37-55 (146)
228 2ve7_A Kinetochore protein HEC 77.0 1.9 6.6E-05 35.4 3.6 23 36-58 186-208 (315)
229 3lay_A Zinc resistance-associa 76.6 18 0.00063 27.7 8.8 16 43-58 114-129 (175)
230 2w6a_A ARF GTPase-activating p 76.6 11 0.00038 25.1 6.5 42 30-71 15-56 (63)
231 3kin_B Kinesin heavy chain; mo 76.2 3.3 0.00011 29.6 4.3 30 25-54 86-115 (117)
232 3w03_C DNA repair protein XRCC 76.2 6 0.00021 31.0 6.0 33 15-47 146-178 (184)
233 2no2_A HIP-I, huntingtin-inter 76.2 18 0.00062 25.7 8.4 9 61-69 87-95 (107)
234 2l5g_A GPS2 protein, G protein 76.1 4.6 0.00016 24.7 4.2 16 36-51 16-31 (38)
235 1t6f_A Geminin; coiled-coil, c 76.1 7.9 0.00027 23.4 5.2 28 28-55 7-34 (37)
236 3ol1_A Vimentin; structural ge 76.0 19 0.00063 25.7 9.6 16 58-73 85-100 (119)
237 1gmj_A ATPase inhibitor; coile 75.6 14 0.00048 25.8 7.2 40 31-70 40-79 (84)
238 4e61_A Protein BIM1; EB1-like 75.6 5 0.00017 29.1 5.0 50 25-74 8-60 (106)
239 2j5u_A MREC protein; bacterial 75.3 1.9 6.5E-05 34.4 3.0 43 17-63 15-57 (255)
240 3mtu_E Head morphogenesis prot 75.0 18 0.00061 25.0 8.1 41 17-57 26-66 (77)
241 1zhc_A Hypothetical protein HP 75.0 14 0.00048 24.6 6.9 45 23-67 19-69 (76)
242 2oxj_A Hybrid alpha/beta pepti 74.7 6.7 0.00023 23.4 4.5 24 24-47 4-27 (34)
243 3a7o_A Autophagy protein 16; c 74.6 8.8 0.0003 26.4 5.8 36 39-74 22-57 (75)
244 2lw1_A ABC transporter ATP-bin 74.5 17 0.00057 24.4 7.7 26 26-51 20-45 (89)
245 3vmx_A Voltage-gated hydrogen 74.3 14 0.00048 23.5 6.6 27 22-48 12-38 (48)
246 3gpv_A Transcriptional regulat 74.1 8.1 0.00028 28.0 6.0 31 44-74 97-127 (148)
247 2zvf_A Alanyl-tRNA synthetase; 73.8 1.8 6.3E-05 31.4 2.4 30 32-61 29-58 (171)
248 3lay_A Zinc resistance-associa 73.7 24 0.0008 27.1 8.7 44 24-67 81-131 (175)
249 1deq_A Fibrinogen (alpha chain 73.6 9.8 0.00034 33.1 7.2 45 21-65 113-157 (390)
250 3viq_B Mating-type switching p 73.5 12 0.00041 26.1 6.4 27 24-50 4-30 (85)
251 2ocy_A RAB guanine nucleotide 73.4 5.9 0.0002 30.3 5.2 9 66-74 132-140 (154)
252 1g6u_A Domain swapped dimer; d 73.3 14 0.00049 23.1 6.1 13 24-36 3-15 (48)
253 2wuj_A Septum site-determining 73.3 4 0.00014 25.9 3.6 22 23-44 29-50 (57)
254 3he5_A Synzip1; heterodimeric 72.7 15 0.00051 23.1 7.0 43 30-72 5-47 (49)
255 1x79_B RAB GTPase binding effe 72.6 21 0.00072 26.0 7.8 28 23-50 8-35 (112)
256 3efg_A Protein SLYX homolog; x 72.6 15 0.00051 24.8 6.6 52 25-76 11-62 (78)
257 3mq9_A Bone marrow stromal ant 72.5 30 0.001 28.5 9.7 28 47-74 434-461 (471)
258 3he5_B Synzip2; heterodimeric 72.5 16 0.00054 23.2 6.5 41 33-73 8-48 (52)
259 3f6n_A Virion-associated prote 72.4 4.9 0.00017 30.2 4.4 31 23-53 4-34 (129)
260 2wuj_A Septum site-determining 72.2 3.4 0.00012 26.3 3.1 15 55-69 40-54 (57)
261 1no4_A Late, head morphogenesi 72.2 23 0.00079 25.0 9.1 50 17-66 22-71 (97)
262 1fxk_C Protein (prefoldin); ar 72.0 16 0.00056 25.6 7.0 32 39-70 99-130 (133)
263 2wq1_A General control protein 71.9 8.6 0.0003 22.8 4.5 25 24-48 3-27 (33)
264 1mdy_A Protein (MYOD BHLH doma 71.9 3.1 0.00011 27.4 3.0 23 8-30 44-66 (68)
265 3ibp_A Chromosome partition pr 71.1 36 0.0012 28.6 9.9 29 52-80 79-107 (302)
266 3ra3_B P2F; coiled coil domain 71.0 5 0.00017 22.7 3.2 8 33-40 5-12 (28)
267 3l4q_C Phosphatidylinositol 3- 70.9 21 0.00072 27.6 7.9 52 26-77 101-159 (170)
268 2efr_A General control protein 70.9 32 0.0011 26.1 9.3 55 19-73 96-150 (155)
269 2w6b_A RHO guanine nucleotide 70.7 17 0.00059 23.7 6.2 22 23-44 12-33 (56)
270 3c3g_A Alpha/beta peptide with 70.7 9.6 0.00033 22.6 4.5 24 24-47 3-26 (33)
271 3cvf_A Homer-3, homer protein 70.6 8.7 0.0003 26.4 5.1 44 19-62 11-54 (79)
272 2ql2_B Neurod1, neurogenic dif 70.3 2.9 9.8E-05 26.9 2.4 23 8-30 35-57 (60)
273 3s4r_A Vimentin; alpha-helix, 70.2 24 0.00081 24.3 9.6 28 48-75 55-82 (93)
274 2ve7_C Kinetochore protein NUF 70.1 7.4 0.00025 31.1 5.3 47 20-66 140-186 (250)
275 2xnx_M M protein, M1-BC1; cell 69.9 12 0.00041 28.6 6.2 23 26-48 31-53 (146)
276 3swy_A Cyclic nucleotide-gated 69.6 18 0.0006 22.6 6.6 45 25-72 2-46 (46)
277 4b4t_J 26S protease regulatory 69.1 7.8 0.00027 33.2 5.6 45 36-80 26-70 (405)
278 1uo4_A General control protein 69.0 7.2 0.00025 23.3 3.8 25 24-48 4-28 (34)
279 1fzc_C Fibrin; blood coagulati 68.5 3 0.0001 34.9 2.8 47 28-74 4-50 (319)
280 4b4t_M 26S protease regulatory 68.3 6.3 0.00022 33.8 4.9 44 24-67 28-71 (434)
281 3qh9_A Liprin-beta-2; coiled-c 68.1 27 0.00094 24.2 8.2 42 32-73 23-64 (81)
282 1gax_A Valrs, valyl-tRNA synth 67.0 11 0.00037 35.0 6.4 22 54-75 840-861 (862)
283 1fmh_A General control protein 67.0 13 0.00045 21.7 4.6 29 23-51 3-31 (33)
284 2aze_A Transcription factor DP 66.9 10 0.00035 29.1 5.3 42 28-69 5-46 (155)
285 3q4f_C DNA repair protein XRCC 66.7 8 0.00027 30.6 4.8 36 17-52 149-185 (186)
286 3c3f_A Alpha/beta peptide with 66.7 13 0.00044 22.2 4.5 24 24-47 4-27 (34)
287 1grj_A GREA protein; transcrip 66.4 36 0.0012 25.0 8.5 55 22-76 10-73 (158)
288 2zdi_C Prefoldin subunit alpha 66.3 13 0.00045 26.9 5.6 37 36-72 106-142 (151)
289 3ra3_B P2F; coiled coil domain 66.2 4.8 0.00017 22.8 2.5 14 58-71 9-22 (28)
290 1deb_A APC protein, adenomatou 65.6 15 0.00052 23.8 5.1 36 36-71 4-39 (54)
291 2aze_B Transcription factor E2 65.5 8.5 0.00029 27.3 4.3 24 25-48 10-33 (106)
292 2dq3_A Seryl-tRNA synthetase; 65.4 14 0.00048 31.3 6.4 54 23-76 32-95 (425)
293 4dci_A Uncharacterized protein 65.4 42 0.0014 25.4 10.0 23 53-75 81-103 (150)
294 3swk_A Vimentin; cytoskeleton, 65.2 29 0.001 23.5 8.6 39 37-75 44-82 (86)
295 4dci_A Uncharacterized protein 65.2 34 0.0012 25.8 7.9 26 45-70 80-105 (150)
296 1am9_A Srebp-1A, protein (ster 64.8 10 0.00034 25.4 4.4 22 45-66 53-74 (82)
297 3kqg_A Langerin, C-type lectin 64.8 12 0.00041 26.6 5.1 16 25-40 3-18 (182)
298 3hhm_B NISH2 P85alpha; PI3KCA, 64.6 26 0.0009 29.5 7.9 46 25-70 209-254 (373)
299 2hy6_A General control protein 64.4 10 0.00034 22.6 3.8 26 23-48 3-28 (34)
300 2aze_A Transcription factor DP 64.2 20 0.0007 27.4 6.5 34 42-75 5-38 (155)
301 3bbp_D GRIP and coiled-coil do 64.1 9.4 0.00032 26.1 4.1 46 25-70 19-64 (71)
302 3q4f_C DNA repair protein XRCC 64.1 9.9 0.00034 30.1 4.8 29 15-43 155-183 (186)
303 2aze_B Transcription factor E2 64.1 17 0.0006 25.7 5.8 35 29-63 7-41 (106)
304 1cii_A Colicin IA; bacteriocin 64.0 30 0.001 31.4 8.4 50 23-72 358-407 (602)
305 1a93_A Coiled coil, LZ, MYC pr 63.7 8.7 0.0003 22.8 3.4 30 39-68 4-33 (34)
306 3uul_A Utrophin; spectrin repe 63.5 28 0.00095 22.7 7.0 32 23-54 38-69 (118)
307 1x79_B RAB GTPase binding effe 63.4 40 0.0014 24.5 8.4 31 27-57 5-35 (112)
308 1j1d_B Troponin T, TNT; THIN f 63.3 38 0.0013 24.2 8.0 63 12-75 26-89 (106)
309 3l4q_C Phosphatidylinositol 3- 63.0 50 0.0017 25.4 8.8 46 29-74 90-135 (170)
310 1zme_C Proline utilization tra 62.6 5.4 0.00019 24.7 2.6 23 22-44 45-67 (70)
311 3q0x_A Centriole protein; cent 62.4 50 0.0017 26.5 8.8 58 12-69 162-219 (228)
312 3a5t_A Transcription factor MA 62.4 3.2 0.00011 30.0 1.6 46 20-69 33-78 (107)
313 3mtu_A Tropomyosin alpha-1 cha 62.4 24 0.00082 23.4 5.9 57 27-83 8-73 (75)
314 3v86_A De novo design helix; c 61.8 11 0.00039 21.1 3.5 12 46-57 11-22 (27)
315 1m1j_C Fibrinogen gamma chain; 61.3 46 0.0016 28.6 8.9 22 53-74 109-130 (409)
316 2d4y_A HAP1, flagellar HOOK-as 61.1 42 0.0014 28.2 8.5 57 12-68 66-122 (463)
317 1t6f_A Geminin; coiled-coil, c 60.7 25 0.00085 21.2 5.6 29 17-45 3-31 (37)
318 1zxa_A CGMP-dependent protein 60.6 13 0.00045 24.9 4.3 36 35-70 18-53 (67)
319 3onj_A T-snare VTI1; helix, HA 60.5 37 0.0013 23.2 8.3 54 22-75 35-92 (97)
320 1deq_A Fibrinogen (alpha chain 60.3 17 0.00059 31.6 6.0 56 19-74 132-187 (390)
321 1lrz_A FEMA, factor essential 59.8 39 0.0013 27.9 8.0 49 21-69 247-301 (426)
322 3jsv_C NF-kappa-B essential mo 59.1 45 0.0015 23.7 8.1 34 16-49 11-47 (94)
323 3gpv_A Transcriptional regulat 58.9 44 0.0015 24.0 7.3 40 35-74 95-134 (148)
324 3gwk_C SAG1039, putative uncha 58.4 34 0.0012 22.0 7.0 32 25-56 12-43 (98)
325 3hhm_B NISH2 P85alpha; PI3KCA, 58.4 33 0.0011 28.9 7.4 44 30-73 200-243 (373)
326 2p90_A Hypothetical protein CG 58.4 15 0.0005 30.2 5.1 55 19-74 214-268 (319)
327 2r2v_A GCN4 leucine zipper; co 58.1 23 0.00078 21.1 4.5 26 23-48 3-28 (34)
328 1use_A VAsp, vasodilator-stimu 58.1 8.5 0.00029 24.2 2.8 16 22-37 16-31 (45)
329 2qag_C Septin-7; cell cycle, c 58.0 2.1 7.2E-05 36.3 0.0 47 24-70 344-394 (418)
330 3jsv_C NF-kappa-B essential mo 57.8 48 0.0016 23.5 8.5 9 26-34 28-36 (94)
331 1m1j_A Fibrinogen alpha subuni 57.8 33 0.0011 30.6 7.5 45 21-65 111-155 (491)
332 1ytz_T Troponin T; muscle, THI 57.7 35 0.0012 24.4 6.5 44 32-75 46-89 (107)
333 3opc_A Uncharacterized protein 57.7 48 0.0016 23.5 7.7 56 20-75 7-67 (154)
334 4b4t_L 26S protease subunit RP 57.6 8.1 0.00028 33.1 3.6 35 45-79 68-102 (437)
335 1t3j_A Mitofusin 1; coiled coi 57.4 48 0.0017 23.5 7.9 45 23-71 49-93 (96)
336 1s94_A S-syntaxin; three helix 57.3 46 0.0016 24.3 7.3 34 14-47 28-62 (180)
337 1joc_A EEA1, early endosomal a 57.1 50 0.0017 23.5 8.4 38 27-64 17-54 (125)
338 3viq_B Mating-type switching p 57.0 27 0.00092 24.3 5.6 24 32-55 5-28 (85)
339 1m1j_B Fibrinogen beta chain; 56.9 71 0.0024 28.0 9.5 13 61-73 180-192 (464)
340 2i1j_A Moesin; FERM, coiled-co 56.6 2.7 9.2E-05 37.2 0.4 13 62-74 404-416 (575)
341 3sja_C Golgi to ER traffic pro 56.5 9.5 0.00033 25.5 3.0 20 20-39 5-24 (65)
342 3vbb_A Seryl-tRNA synthetase, 55.9 19 0.00065 32.0 5.7 52 24-75 44-131 (522)
343 1dkg_A Nucleotide exchange fac 55.8 16 0.00055 28.3 4.7 18 54-71 58-75 (197)
344 1no4_A Late, head morphogenesi 55.4 52 0.0018 23.2 7.0 43 30-72 28-70 (97)
345 4b4t_L 26S protease subunit RP 55.2 12 0.00041 32.1 4.2 33 38-70 68-100 (437)
346 3a5t_A Transcription factor MA 54.6 0.22 7.7E-06 36.2 -5.7 38 37-74 60-97 (107)
347 3gp4_A Transcriptional regulat 54.5 56 0.0019 23.4 7.3 43 33-75 86-128 (142)
348 2f23_A Anti-cleavage anti-GREA 54.4 60 0.0021 23.6 7.8 55 23-77 12-74 (156)
349 3s9g_A Protein hexim1; cyclin 54.3 59 0.002 23.5 8.3 47 25-71 34-87 (104)
350 2bni_A General control protein 54.2 19 0.00066 21.4 3.8 24 24-47 4-27 (34)
351 4ad8_A DNA repair protein RECN 54.1 63 0.0022 27.2 8.5 14 43-56 208-221 (517)
352 2qih_A Protein USPA1; trimeric 54.1 65 0.0022 24.7 7.7 43 27-69 39-81 (157)
353 2l5g_B Putative uncharacterize 54.0 36 0.0012 21.0 5.4 32 25-56 6-37 (42)
354 2p4v_A Transcription elongatio 53.7 64 0.0022 23.7 8.2 56 21-76 9-73 (158)
355 2dnx_A Syntaxin-12; snare, HAB 53.0 59 0.002 23.1 7.5 14 61-74 89-102 (130)
356 4fla_A Regulation of nuclear P 53.0 58 0.002 24.3 7.3 53 22-74 87-146 (152)
357 1gqe_A Release factor 2, RF2; 52.8 35 0.0012 29.1 6.7 20 52-71 97-116 (365)
358 1e91_A Paired amphipathic heli 52.6 24 0.00082 23.8 4.7 62 13-74 4-78 (85)
359 2ke4_A CDC42-interacting prote 52.4 57 0.0019 22.8 6.7 31 45-75 58-88 (98)
360 3he4_A Synzip6; heterodimeric 52.3 44 0.0015 21.4 5.6 36 36-71 18-53 (56)
361 1yhn_B RILP, RAB interacting l 52.3 10 0.00034 25.5 2.6 25 24-48 6-30 (65)
362 1g1e_B SIN3A; four-helix bundl 51.7 41 0.0014 22.8 5.8 37 15-51 9-45 (89)
363 2qyw_A Vesicle transport throu 51.1 50 0.0017 22.8 6.2 22 51-72 80-101 (102)
364 2zdi_C Prefoldin subunit alpha 51.0 28 0.00097 25.1 5.2 24 24-47 12-35 (151)
365 4ayc_A E3 ubiquitin-protein li 51.0 59 0.002 22.6 7.2 38 31-68 5-42 (138)
366 2lw9_A Unconventionnal myosin- 50.2 11 0.00039 24.1 2.5 20 55-74 5-24 (51)
367 3mtu_A Tropomyosin alpha-1 cha 50.2 53 0.0018 21.7 7.7 39 23-61 11-56 (75)
368 3cve_A Homer protein homolog 1 50.1 56 0.0019 22.0 7.3 45 18-62 4-48 (72)
369 3onj_A T-snare VTI1; helix, HA 50.0 58 0.002 22.2 7.1 46 16-61 43-92 (97)
370 3ghg_A Fibrinogen alpha chain; 49.7 41 0.0014 30.6 6.9 18 53-70 135-152 (562)
371 1s1c_X RHO-associated, coiled- 49.6 29 0.00099 23.4 4.6 27 22-48 7-33 (71)
372 3kin_B Kinesin heavy chain; mo 49.6 27 0.00092 24.8 4.7 23 52-74 92-114 (117)
373 2oqq_A Transcription factor HY 49.2 44 0.0015 20.6 5.7 29 33-61 8-36 (42)
374 2pms_C Pneumococcal surface pr 49.1 38 0.0013 25.1 5.6 24 24-47 64-87 (125)
375 1lwu_B Fibrinogen beta chain; 48.7 38 0.0013 28.1 6.2 27 43-69 29-55 (323)
376 2j69_A Bacterial dynamin-like 48.4 41 0.0014 29.9 6.7 45 28-72 352-396 (695)
377 2pnv_A Small conductance calci 48.2 32 0.0011 21.1 4.2 27 22-48 10-36 (43)
378 2f05_A Paired amphipathic heli 47.9 39 0.0013 23.8 5.3 65 15-85 6-83 (105)
379 3mud_A DNA repair protein XRCC 47.5 77 0.0026 24.6 7.4 41 17-57 123-164 (175)
380 3q0x_A Centriole protein; cent 47.5 1.1E+02 0.0037 24.5 8.6 53 21-73 164-216 (228)
381 3t97_C Nuclear pore glycoprote 47.1 54 0.0018 21.4 5.6 53 15-67 6-58 (64)
382 1m1j_B Fibrinogen beta chain; 47.0 1.2E+02 0.004 26.6 9.3 27 43-69 169-195 (464)
383 2vz4_A Tipal, HTH-type transcr 47.0 44 0.0015 22.5 5.4 26 47-72 79-104 (108)
384 3ilw_A DNA gyrase subunit A; D 46.6 43 0.0015 29.6 6.4 10 60-69 448-457 (470)
385 3qfl_A MLA10; coiled-coil, (CC 46.6 51 0.0018 22.7 5.7 35 14-48 12-46 (115)
386 3zbh_A ESXA; unknown function, 46.1 54 0.0018 20.7 7.0 30 26-55 14-43 (99)
387 1vcs_A Vesicle transport throu 45.7 31 0.001 23.8 4.4 25 51-75 69-93 (102)
388 1ez3_A Syntaxin-1A; three heli 45.6 60 0.002 22.0 5.9 12 47-58 48-59 (127)
389 1hs7_A Syntaxin VAM3; UP-and-D 45.3 56 0.0019 22.9 5.8 61 14-74 13-82 (97)
390 1ytz_T Troponin T; muscle, THI 45.1 81 0.0028 22.4 6.7 36 40-75 47-82 (107)
391 3zbh_A ESXA; unknown function, 45.0 50 0.0017 20.9 5.1 24 51-74 58-81 (99)
392 3ghg_C Fibrinogen gamma chain; 44.9 1.5E+02 0.0052 25.6 9.9 42 17-58 80-121 (411)
393 2lf0_A Uncharacterized protein 44.8 67 0.0023 23.8 6.3 46 26-71 8-58 (123)
394 3gwk_C SAG1039, putative uncha 44.8 31 0.0011 22.2 4.1 25 50-74 56-80 (98)
395 2nrj_A HBL B protein; enteroto 44.8 1.1E+02 0.0038 25.2 8.4 28 21-48 123-150 (346)
396 2oie_A RS21-C6; helix, hydrola 44.4 70 0.0024 21.6 6.2 20 40-59 38-57 (111)
397 3ra3_A P1C; coiled coil domain 44.3 16 0.00054 20.6 2.2 18 33-50 5-22 (28)
398 2lfh_A DNA-binding protein inh 44.3 22 0.00076 23.8 3.3 20 8-27 47-66 (68)
399 3rvy_A ION transport protein; 44.2 5.6 0.00019 30.7 0.4 24 50-73 257-280 (285)
400 1y1u_A Signal transducer and a 44.0 97 0.0033 28.0 8.4 30 21-50 19-48 (585)
401 2lw1_A ABC transporter ATP-bin 43.9 69 0.0024 21.3 8.4 50 21-70 22-77 (89)
402 1avy_A Fibritin, gpwac M; bact 43.3 76 0.0026 21.7 6.7 41 37-85 10-50 (74)
403 2yko_A LINE-1 ORF1P; RNA-bindi 43.0 59 0.002 26.3 6.3 49 26-74 4-52 (233)
404 4ad8_A DNA repair protein RECN 42.8 84 0.0029 26.4 7.5 10 64-73 228-237 (517)
405 1j1d_B Troponin T, TNT; THIN f 42.5 82 0.0028 22.4 6.4 40 38-77 45-84 (106)
406 3azd_A Short alpha-tropomyosin 42.5 10 0.00035 22.4 1.3 27 36-62 5-31 (37)
407 3nr7_A DNA-binding protein H-N 42.5 80 0.0027 21.6 6.5 40 22-63 13-52 (86)
408 2gd5_A Charged multivesicular 42.5 48 0.0017 24.6 5.4 34 15-48 11-48 (179)
409 1zvu_A Topoisomerase IV subuni 42.4 50 0.0017 30.6 6.4 44 29-72 403-446 (716)
410 1j1d_C Troponin I, TNI; THIN f 42.2 1E+02 0.0035 22.8 7.0 32 44-75 74-105 (133)
411 1ykh_B RNA polymerase II holoe 42.1 50 0.0017 23.9 5.3 34 41-74 91-124 (132)
412 3pxg_A Negative regulator of g 42.1 67 0.0023 26.8 6.7 17 53-69 424-440 (468)
413 2vkl_A RV0948C/MT0975; helical 42.0 55 0.0019 22.1 5.2 37 22-58 13-49 (90)
414 2qyw_A Vesicle transport throu 41.9 51 0.0018 22.7 5.1 17 17-33 59-75 (102)
415 1r8e_A Multidrug-efflux transp 41.7 95 0.0033 23.3 7.0 35 38-72 82-116 (278)
416 2oa5_A Hypothetical protein BQ 41.7 15 0.00052 26.8 2.4 23 23-45 10-32 (110)
417 1ybz_A Chorismate mutase; cons 41.7 69 0.0023 21.7 5.7 35 23-57 19-53 (91)
418 1fzc_C Fibrin; blood coagulati 41.3 27 0.00093 29.1 4.2 39 36-74 5-43 (319)
419 1yke_B RNA polymerase II holoe 41.2 51 0.0017 24.6 5.3 34 41-74 91-124 (151)
420 3mtu_E Head morphogenesis prot 41.0 85 0.0029 21.5 7.3 35 30-64 32-66 (77)
421 1x8y_A Lamin A/C; structural p 40.8 80 0.0027 21.1 9.7 20 54-73 40-59 (86)
422 2p2u_A HOST-nuclease inhibitor 40.5 1.1E+02 0.0038 22.8 8.7 53 16-74 18-70 (171)
423 4ani_A Protein GRPE; chaperone 40.2 1.1E+02 0.0038 24.1 7.4 33 24-56 62-94 (213)
424 1hlo_A Protein (transcription 40.2 52 0.0018 21.4 4.7 19 53-71 61-79 (80)
425 3fav_B ESAT-6, 6 kDa early sec 39.4 72 0.0025 20.2 5.6 25 30-54 14-38 (94)
426 2d8d_A Aroag, phospho-2-dehydr 39.2 80 0.0027 20.7 6.0 36 23-58 5-40 (90)
427 2inr_A DNA topoisomerase 4 sub 38.9 65 0.0022 28.7 6.4 16 39-54 458-473 (514)
428 4dk0_A Putative MACA; alpha-ha 38.8 1.3E+02 0.0045 23.4 7.6 18 56-73 129-146 (369)
429 3he4_B Synzip5; heterodimeric 38.7 68 0.0023 19.8 5.8 36 31-73 6-41 (46)
430 1ezj_A Nucleocapsid phosphopro 38.7 43 0.0015 24.5 4.4 22 21-42 73-94 (115)
431 1ykh_B RNA polymerase II holoe 38.7 89 0.003 22.6 6.2 34 35-68 92-125 (132)
432 1ecm_A Endo-oxabicyclic transi 38.6 80 0.0027 21.4 5.7 36 23-58 7-42 (109)
433 3frt_A Charged multivesicular 38.4 76 0.0026 25.0 6.2 24 24-47 24-47 (218)
434 3plt_A Sphingolipid long chain 38.0 1.4E+02 0.0047 24.1 7.7 50 23-72 99-154 (234)
435 2j69_A Bacterial dynamin-like 37.9 68 0.0023 28.5 6.4 30 45-74 362-391 (695)
436 1lwu_B Fibrinogen beta chain; 37.3 58 0.002 27.0 5.6 25 50-74 29-53 (323)
437 3f6n_A Virion-associated prote 37.3 1.1E+02 0.0038 22.8 6.5 45 17-61 5-49 (129)
438 1yke_B RNA polymerase II holoe 37.0 92 0.0032 23.2 6.2 37 34-70 91-127 (151)
439 1t3j_A Mitofusin 1; coiled coi 36.6 50 0.0017 23.4 4.4 18 52-69 50-67 (96)
440 1j1d_C Troponin I, TNI; THIN f 36.4 1.1E+02 0.0038 22.6 6.5 10 15-24 23-32 (133)
441 2ap3_A Conserved hypothetical 36.2 93 0.0032 24.4 6.3 39 23-61 157-195 (199)
442 1p9i_A Cortexillin I/GCN4 hybr 36.0 38 0.0013 19.4 3.0 15 30-44 8-22 (31)
443 3aon_A V-type sodium ATPase su 36.0 1.5E+02 0.005 22.8 7.5 47 23-69 19-65 (217)
444 1uix_A RHO-associated kinase; 36.0 98 0.0034 20.8 7.4 41 22-62 5-45 (71)
445 2z5i_A TM, general control pro 36.0 78 0.0027 19.7 5.7 19 19-37 10-28 (52)
446 1x59_A Histidyl-tRNA synthetas 35.9 65 0.0022 21.0 4.6 17 38-54 36-52 (73)
447 3a2a_A Voltage-gated hydrogen 35.8 91 0.0031 20.4 6.3 24 25-48 22-45 (58)
448 2xkj_E Topoisomerase IV; type 35.6 80 0.0027 29.5 6.7 19 37-55 698-716 (767)
449 2fup_A Hypothetical protein PA 35.5 1.1E+02 0.0038 21.2 9.4 50 22-71 8-61 (157)
450 3e35_A Uncharacterized protein 35.3 70 0.0024 26.5 5.7 46 30-75 227-275 (325)
451 4dnd_A Syntaxin-10, SYN10; str 35.3 1.3E+02 0.0043 21.8 9.1 25 22-46 68-92 (130)
452 4ioe_A Secreted protein ESXB; 35.0 66 0.0023 20.2 4.5 16 59-74 66-81 (93)
453 2y3a_B Phosphatidylinositol 3- 34.9 1.4E+02 0.0047 24.5 7.4 44 29-72 91-134 (302)
454 3mov_A Lamin-B1; LMNB1, B-type 34.9 1.1E+02 0.0038 21.0 10.0 20 53-72 48-67 (95)
455 4ioe_A Secreted protein ESXB; 34.8 69 0.0023 20.2 4.6 31 25-55 13-43 (93)
456 1qvr_A CLPB protein; coiled co 34.8 87 0.003 28.1 6.7 16 40-55 435-450 (854)
457 1x4t_A Hypothetical protein LO 34.6 1.2E+02 0.0041 21.4 8.2 60 6-65 13-75 (92)
458 1zxa_A CGMP-dependent protein 34.6 72 0.0025 21.2 4.7 26 50-75 26-51 (67)
459 1fzc_B Fibrin; blood coagulati 34.5 19 0.00066 30.0 2.2 48 21-68 4-56 (328)
460 3uun_A Dystrophin; triple heli 34.5 91 0.0031 20.0 8.9 24 24-47 39-62 (119)
461 3uul_A Utrophin; spectrin repe 34.5 92 0.0032 20.0 6.1 56 17-72 39-108 (118)
462 1yhn_B RILP, RAB interacting l 34.4 76 0.0026 21.2 4.7 31 42-72 3-33 (65)
463 4dyl_A Tyrosine-protein kinase 34.3 2E+02 0.0067 23.7 10.9 24 54-77 371-394 (406)
464 3vp9_A General transcriptional 34.2 1.2E+02 0.0039 21.3 5.9 19 53-71 72-90 (92)
465 2c5k_T Syntaxin TLG1, T-snare 34.1 82 0.0028 21.6 5.1 13 60-72 79-91 (95)
466 3kqg_A Langerin, C-type lectin 33.9 62 0.0021 22.7 4.6 6 78-83 50-55 (182)
467 2vs0_A Virulence factor ESXA; 33.8 88 0.003 19.6 7.1 30 26-55 11-40 (97)
468 2efr_A General control protein 33.3 1.5E+02 0.0053 22.2 9.7 52 23-74 58-116 (155)
469 3a6m_A Protein GRPE, HSP-70 co 33.2 0.63 2.2E-05 35.9 -6.5 28 40-67 24-51 (177)
470 3sjb_C Golgi to ER traffic pro 33.1 70 0.0024 22.6 4.6 46 30-76 12-69 (93)
471 1j1e_C Troponin I, TNI; THIN f 33.0 1.6E+02 0.0053 22.9 7.0 36 40-75 70-105 (180)
472 2avr_X Adhesion A; antiparalle 33.0 1.4E+02 0.0049 21.8 8.7 56 20-76 8-64 (119)
473 2czy_A Paired amphipathic heli 33.0 84 0.0029 20.6 4.8 35 16-50 4-38 (77)
474 3uux_B Mitochondrial division 32.7 1.5E+02 0.0052 24.1 7.2 16 57-72 199-214 (242)
475 3fcn_A AN alpha-helical protei 32.6 1.5E+02 0.0052 22.5 6.8 24 38-61 41-65 (164)
476 3rvy_A ION transport protein; 32.5 9.4 0.00032 29.5 0.0 24 43-66 257-280 (285)
477 4dk0_A Putative MACA; alpha-ha 32.5 1.5E+02 0.0051 23.1 7.1 34 41-74 121-154 (369)
478 3n7n_E Monopolin complex subun 32.5 9.4 0.00032 27.4 0.0 26 21-46 50-75 (95)
479 3pxg_A Negative regulator of g 32.5 95 0.0032 25.8 6.2 39 37-75 396-439 (468)
480 2c5k_T Syntaxin TLG1, T-snare 32.4 1.2E+02 0.0041 20.8 6.7 15 61-75 73-87 (95)
481 3lpx_A GYRA, DNA gyrase, A sub 32.3 97 0.0033 27.7 6.4 43 29-71 440-482 (500)
482 1lwu_A Fibrinogen alpha-1 chai 32.3 1.2E+02 0.0042 22.3 6.0 28 21-48 22-49 (119)
483 3e98_A GAF domain of unknown f 32.3 1.2E+02 0.0042 23.7 6.5 21 22-42 73-93 (252)
484 3j21_W 50S ribosomal protein L 32.2 87 0.003 20.6 4.8 24 36-59 10-33 (72)
485 4dnd_A Syntaxin-10, SYN10; str 32.1 1.4E+02 0.0049 21.5 7.7 52 25-76 35-94 (130)
486 2nov_A DNA topoisomerase 4 sub 31.8 69 0.0024 28.4 5.4 20 29-48 431-450 (496)
487 3tq7_B Microtubule-associated 31.6 24 0.00081 24.3 1.9 25 28-52 1-25 (82)
488 3rmi_A Chorismate mutase prote 31.6 1.3E+02 0.0045 21.0 6.5 58 18-75 9-66 (114)
489 4i0x_A ESAT-6-like protein MAB 31.4 1.1E+02 0.0037 19.9 5.2 52 25-76 4-67 (94)
490 1gk7_A Vimentin; intermediate 31.3 84 0.0029 18.6 5.1 35 27-61 5-39 (39)
491 2qag_C Septin-7; cell cycle, c 31.3 10 0.00035 32.1 0.0 57 23-79 353-410 (418)
492 4i0x_B ESAT-6-like protein MAB 31.0 1.1E+02 0.0039 20.1 7.9 52 25-76 15-80 (103)
493 1vq8_V 50S ribosomal protein L 31.0 88 0.003 20.5 4.6 30 30-59 6-36 (71)
494 1vcs_A Vesicle transport throu 31.0 97 0.0033 21.2 5.1 60 21-80 38-98 (102)
495 3l4f_A RHO guanine nucleotide 30.9 1.1E+02 0.0039 20.0 6.2 37 20-56 6-42 (61)
496 3c9i_A Tail needle protein GP2 30.5 2.2E+02 0.0075 23.1 9.6 58 15-72 78-135 (242)
497 3hh0_A Transcriptional regulat 30.4 1.5E+02 0.0051 21.2 6.5 58 18-75 49-113 (146)
498 3bbo_Z Ribosomal protein L29; 30.4 1.2E+02 0.004 23.7 5.9 45 30-74 67-123 (173)
499 2gd5_A Charged multivesicular 30.1 91 0.0031 23.1 5.1 36 38-73 10-45 (179)
500 1gk6_A Vimentin; intermediate 30.1 1E+02 0.0035 19.3 6.4 48 16-63 2-49 (59)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=98.76 E-value=2.1e-08 Score=69.21 Aligned_cols=45 Identities=27% Similarity=0.402 Sum_probs=40.6
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 4 PGRPPKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 4 P~rp~K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
|+...|+|||+||.+||.||+.|+.+++.|+++++.|+..++..+
T Consensus 33 P~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 33 VGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555589999999999999999999999999999999999887654
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=98.49 E-value=2.6e-07 Score=63.13 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=28.3
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 032644 7 PPKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQ 41 (136)
Q Consensus 7 p~K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ 41 (136)
..|.+|++||.+||.||+.|+.++++|+.+.+.|.
T Consensus 33 ~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 33 GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999998888765433333
No 3
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=98.43 E-value=6.7e-07 Score=62.58 Aligned_cols=47 Identities=26% Similarity=0.356 Sum_probs=37.2
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032644 8 PKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNEL 54 (136)
Q Consensus 8 ~K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnEL 54 (136)
.|.+|++||.+||.||+.|+.+.++|..+.+.|+.+...|..+..+|
T Consensus 39 ~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 39 EKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999999998888777666665555555555444
No 4
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=98.18 E-value=1e-06 Score=64.58 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=27.6
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 8 PKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 8 ~K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
.|+|||+||.+||.||+.|+.++++|+++.. +...|+.++..|...+..||.|.+
T Consensus 61 ~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~-----------~~~~l~~~n~~L~~riqeLE~~a~ 115 (118)
T 4ati_A 61 MRWNKGTILKASVDYIRKLQREQQRAKDLEN-----------RQKKLEHANRHLLLRVQELEMQAR 115 (118)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------------------------
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999987532 233455666666666666666544
No 5
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=98.14 E-value=6.5e-06 Score=56.81 Aligned_cols=45 Identities=16% Similarity=0.292 Sum_probs=38.2
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032644 8 PKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKN 52 (136)
Q Consensus 8 ~K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKn 52 (136)
.|..|++||..|+.|+++|+.+.++|..+++.|+.++..|..+.+
T Consensus 34 ~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 34 SRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999888888777777777766544
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=97.99 E-value=6.5e-05 Score=52.87 Aligned_cols=60 Identities=18% Similarity=0.448 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|-.|+.-+.-|+-|++.||+.|..|.++..++..++..|+.|+..|+.|...-+..|.++
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888899999999999999999999999999999999999999998888777763
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=97.97 E-value=9.9e-06 Score=55.07 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=32.7
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 032644 8 PKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEK 43 (136)
Q Consensus 8 ~K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee 43 (136)
.|.+|++||..||.||+.|+.++++|+.+++.|+.+
T Consensus 44 ~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 44 EKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999999999999888887754
No 8
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=97.54 E-value=7.3e-05 Score=51.04 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=26.3
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 032644 4 PGRPPKTDKATILSDVVRMMEQLRTEAQKL 33 (136)
Q Consensus 4 P~rp~K~DKAsIL~DAir~lkqLr~e~~~L 33 (136)
|+...|+||++||.+||.||++|+.++.=|
T Consensus 35 P~~~~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 35 PGNARKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp SSCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 666679999999999999999999987654
No 9
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.26 E-value=0.002 Score=45.45 Aligned_cols=56 Identities=25% Similarity=0.334 Sum_probs=39.2
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 7 PPKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 7 p~K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
-.|..|++||.-|+.|++.|+.+.++++++...+ .-|...+..|.--+-.||-|-+
T Consensus 25 ~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~-----------k~le~~n~~l~~riqELE~qa~ 80 (83)
T 4ath_A 25 DMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ-----------KKLEHANRHLLLRVQELEMQAR 80 (83)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhhhhhHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999988765432 2334444445444555555443
No 10
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=97.13 E-value=0.0023 Score=48.02 Aligned_cols=52 Identities=25% Similarity=0.272 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.++..|+..||.++.+++.++.+++.|..+|++|+..|+.++-+||..+..
T Consensus 84 l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 84 IENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555556777777777777777777777777777777777777777653
No 11
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.91 E-value=0.008 Score=42.16 Aligned_cols=55 Identities=27% Similarity=0.406 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHh
Q 032644 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKA-------DKEKLEQQVKA 74 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~-------eke~Le~qlk~ 74 (136)
..++.+|-..|+.+=+.+.-|+.++.+||.+.+.|.+|+..+++ |.++|.++...
T Consensus 5 ~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 5 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 36789999999999999999888888888888888888887555 55555555443
No 12
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=96.63 E-value=0.00013 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.5
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHH
Q 032644 8 PKTDKATILSDVVRMMEQLRTEAQ 31 (136)
Q Consensus 8 ~K~DKAsIL~DAir~lkqLr~e~~ 31 (136)
.|+||++||.+||.||++|+.+.+
T Consensus 41 ~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 41 SGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp TCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999987654
No 13
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.29 E-value=0.038 Score=41.32 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
..|+.+++.+++++..|..+...+..+.++++.|+..|+.++..|+.++..
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555566666666666666666666666654
No 14
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=96.25 E-value=0.0023 Score=43.46 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=19.8
Q ss_pred CCCCchhhhHHHHHHHHHHHHH
Q 032644 7 PPKTDKATILSDVVRMMEQLRT 28 (136)
Q Consensus 7 p~K~DKAsIL~DAir~lkqLr~ 28 (136)
..|+|||+||.+||.||+.|+.
T Consensus 42 ~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 42 SRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSC
T ss_pred cccccHHHHHHHHHHHHHHHhc
Confidence 3699999999999999999864
No 15
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=96.19 E-value=0.0084 Score=38.62 Aligned_cols=40 Identities=15% Similarity=0.341 Sum_probs=21.4
Q ss_pred HHHHHHHHHH-------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032644 18 DVVRMMEQLR-------TEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 18 DAir~lkqLr-------~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
||+.|||+-. ++++.|+.+|+.|+.++..|+.+-.||+.+
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778887764 477777777777777777777776666654
No 16
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=96.00 E-value=0.02 Score=36.74 Aligned_cols=42 Identities=29% Similarity=0.398 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKE 66 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke 66 (136)
-||..+.+||+.|-.|+.+-+.|..-.-.||||..+|+.|..
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999888888888888888887776654
No 17
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=95.96 E-value=0.015 Score=39.39 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+|++|..++..|+..+.. |..|+..|+.+++.|..+++.
T Consensus 30 ~i~~LE~~v~~le~~~~~--------------l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSS--------------TTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554444 445555555555555555443
No 18
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=95.86 E-value=0.025 Score=36.91 Aligned_cols=36 Identities=39% Similarity=0.496 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 37 TEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 37 n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+..|+.+...|+.+..+|+.+...|+.|+..|...|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 19
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=95.61 E-value=0.071 Score=37.58 Aligned_cols=48 Identities=23% Similarity=0.497 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
..|..+++.|+.+-+.|..++..|..|+.+|..|...++.+.++|..+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 667888888888888888888888888888888888888888888764
No 20
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=95.58 E-value=0.056 Score=34.78 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=24.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 34 KQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 34 k~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
|..+..|+.+...|+.+..+|+.+...|+.|+..|.++|
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666666666666666666666666666665554
No 21
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=95.47 E-value=0.0036 Score=41.19 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.7
Q ss_pred CCCchhhhHHHHHHHHHHHHHHH
Q 032644 8 PKTDKATILSDVVRMMEQLRTEA 30 (136)
Q Consensus 8 ~K~DKAsIL~DAir~lkqLr~e~ 30 (136)
.|..||+||..||.||++|+.|+
T Consensus 39 ~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 39 AAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CCSCTTHHHHHHHHHHHHHHTCS
T ss_pred CcccHHHHHHHHHHHHHHHHHHh
Confidence 68889999999999999998764
No 22
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=95.23 E-value=0.058 Score=34.69 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNEL 54 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnEL 54 (136)
++.+|..++..|..+|..|.+++..|..|...|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544444444444433
No 23
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=95.20 E-value=0.21 Score=36.18 Aligned_cols=60 Identities=27% Similarity=0.446 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------HHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKA-----------EKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~-----------EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
=|++.-|-|..|+.|++.|+..+.+|+..+.++.. ..++|..+...++.+.++.-++++.
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~ 107 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQE 107 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 36777788889999999999999999887766543 3456666777777777776666665
No 24
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=94.91 E-value=0.13 Score=33.38 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELR 55 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELr 55 (136)
.+.+|..++..|+.+|..|..++..|..|+..|+
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666655555555555444
No 25
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=94.83 E-value=0.14 Score=37.76 Aligned_cols=68 Identities=21% Similarity=0.362 Sum_probs=42.1
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 8 PKTDKATILSDVVRMMEQLRTEAQKLKQST----EDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 8 ~K~DKAsIL~DAir~lkqLr~e~~~Lk~~n----~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.+.+|-.+|-.=-+-|.+|+.++++++.+. ..|...+..|..|..+-|..++....|.+.|..++..+
T Consensus 9 ~~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 9 NKDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444555666666666666543 34455566777777777777777777777777777654
No 26
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=94.81 E-value=0.18 Score=36.87 Aligned_cols=52 Identities=31% Similarity=0.427 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAE----KNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~E----KnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.++|+..+++|+-+++.+.++.+....| -|.|++|.+.|+...+.|...++.
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iRe 60 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRE 60 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777666665555443 444555555555555555544443
No 27
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.088 Score=44.82 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+.+|+.|++.|+++...|+++++.++.|..+|.++-...+...-+|.++++.+
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45788999999999999999999999999999998888888888898888885
No 28
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=94.75 E-value=0.057 Score=39.03 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCC
Q 032644 42 EKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSGFLP 83 (136)
Q Consensus 42 ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p~f~p 83 (136)
++...|+.|..+|+.|+.+|+.+|+.||-+|......-.|-|
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~ 53 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQ 53 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 345555566666666666666666666666666554444544
No 29
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=94.75 E-value=0.045 Score=35.38 Aligned_cols=37 Identities=32% Similarity=0.497 Sum_probs=17.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032644 35 QSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 35 ~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
+.+..|+.++..|+.|.++|+.+...|+.|+..|.++
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444444444444443
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.32 Score=37.48 Aligned_cols=53 Identities=17% Similarity=0.185 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.|.+|+++...|+..+..|.+++++-..--..|+||...|..+..-+|..++.
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~k 121 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSD 121 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433333446777777777776666666554
No 31
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=94.70 E-value=0.16 Score=33.14 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032644 37 TEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 37 n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
...|+.+.++|+.+-.+|+.+...|+.|+.-|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 32
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=94.60 E-value=0.25 Score=35.92 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----------HHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKA-----------EKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~-----------EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|++.-|-|..|+.|++.|+..+.+|+..+.++.. ..++|..+...++.+.++.-.+++.
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~ 109 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKI 109 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888999999999999999887765543 3445666666777776666666655
No 33
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.43 E-value=0.28 Score=38.26 Aligned_cols=55 Identities=20% Similarity=0.421 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHh
Q 032644 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE----QQVKA 74 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le----~qlk~ 74 (136)
-..+++|.+.++.|..+.+.+.+....+..|+..|.|..+.|+.++.+++ -+||+
T Consensus 89 se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKa 147 (168)
T 3o0z_A 89 SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKS 147 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34566777777777777777777777777777777777777777777776 44554
No 34
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=94.43 E-value=0.044 Score=45.16 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=17.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCC
Q 032644 54 LRDEKQRLKADKEKLEQQVKAMSAPSG 80 (136)
Q Consensus 54 LrdEk~~Lk~eke~Le~qlk~~~~~p~ 80 (136)
|.++...++.|+++|+.|++.+..||.
T Consensus 73 L~~~Lk~ar~El~~LkeElerL~sPPL 99 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDRLGQPPS 99 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 556666666666666666777667764
No 35
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.26 E-value=0.54 Score=34.09 Aligned_cols=60 Identities=17% Similarity=0.351 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+.|+-..+..|..+-..|......|++...+.....++|..+|..|..+++.|+.++..
T Consensus 63 ~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 63 NLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666555555555555555555554444445555555555555555544443
No 36
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=94.25 E-value=0.24 Score=35.61 Aligned_cols=54 Identities=19% Similarity=0.427 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+.+||.++.+|+.++.....++..|..+-.+-+.......+++.+++++|..++
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666666666677777787777653
No 37
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=94.22 E-value=0.37 Score=31.38 Aligned_cols=46 Identities=28% Similarity=0.349 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032644 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKAD 64 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~e 64 (136)
|.|+=..=+.+++.|..+...|+.++.+|+.+.+.|+.|...|+.-
T Consensus 14 A~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 14 ATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333344455555555555555555555555555555555543
No 38
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=94.14 E-value=0.18 Score=31.51 Aligned_cols=36 Identities=22% Similarity=0.491 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
.||.+|-.++..|...|..|++.+..|..|-.=||.
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 489999999999999999999999999877666663
No 39
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=94.13 E-value=0.16 Score=34.86 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
-|.+|+..+++--+++...++.|++|..+..|..++.+.|+++.++++
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 388888888888888888889999999999999999998888888764
No 40
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.05 E-value=0.24 Score=47.15 Aligned_cols=16 Identities=38% Similarity=0.690 Sum_probs=6.3
Q ss_pred HHHHHHHhHHHHHHHH
Q 032644 54 LRDEKQRLKADKEKLE 69 (136)
Q Consensus 54 LrdEk~~Lk~eke~Le 69 (136)
|++||+.|+.+++.|+
T Consensus 1028 L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 41
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.03 E-value=0.45 Score=37.59 Aligned_cols=52 Identities=31% Similarity=0.416 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAE----KNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~E----KnELrdEk~~Lk~eke~Le~qlk 73 (136)
-.++|++++++|+.++..+..+.+....| -|.|++|.+.|+..++.|...+.
T Consensus 57 ~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 57 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665555555444 55555555555555555555443
No 42
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=93.98 E-value=0.068 Score=34.53 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 44 IKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+.+|..+-.+|..++..|+.++..|+.++.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 43
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=93.96 E-value=0.41 Score=32.97 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHhc
Q 032644 39 DLQEKIKELKAEKNEL-------RDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 39 ~L~ee~~~L~~EKnEL-------rdEk~~Lk~eke~Le~qlk~~ 75 (136)
.|++....|..|||.| .+...+|.+.+-.|+.+++-+
T Consensus 39 ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 39 ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555554 444445566666666666654
No 44
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=93.88 E-value=0.079 Score=43.66 Aligned_cols=41 Identities=20% Similarity=0.326 Sum_probs=36.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
+..|+.++..|.+.+++|+.+.+++|+|...||.|+++|.+
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55788888899999999999999999999999999998864
No 45
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=93.87 E-value=0.3 Score=33.40 Aligned_cols=50 Identities=12% Similarity=0.290 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+..+++.++.+|..|++.++.|+...++-+.+-.+++.|..++..+|-.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~ 53 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDG 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46678899999999999999999999999999989999998888877643
No 46
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.77 E-value=0.25 Score=41.85 Aligned_cols=11 Identities=27% Similarity=0.299 Sum_probs=4.0
Q ss_pred HHHHHHHHHHh
Q 032644 64 DKEKLEQQVKA 74 (136)
Q Consensus 64 eke~Le~qlk~ 74 (136)
|..++.++++.
T Consensus 566 e~~~~~~~~~~ 576 (597)
T 3oja_B 566 ETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 47
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=93.67 E-value=0.72 Score=32.31 Aligned_cols=57 Identities=21% Similarity=0.379 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+-|+=|++||-.+..|..+...-+-+.+.-|.|...|++....=.+|+++|+.|+-+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 456778888888888877776666777888888888888888888899999988754
No 48
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=93.65 E-value=0.23 Score=42.56 Aligned_cols=52 Identities=23% Similarity=0.306 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
..|+.|+.+|++..+.|+++++.++.|..++.++......+.-+|.++++.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999998888888888899998886
No 49
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=93.44 E-value=0.23 Score=35.84 Aligned_cols=39 Identities=28% Similarity=0.491 Sum_probs=33.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 35 QSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 35 ~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
++..+|..+|.+|..|.+.||++|..|+.++++.. +++=
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~--l~Gd 50 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRA--LQGD 50 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS--CCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccc
Confidence 46778888999999999999999999999999864 6553
No 50
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=93.43 E-value=0.29 Score=33.01 Aligned_cols=34 Identities=18% Similarity=0.419 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 42 EKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 42 ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
..+++|..+-.+|++++..|..|.+.|..++..|
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L 62 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQL 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666666666666666665543
No 51
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=93.42 E-value=0.39 Score=30.76 Aligned_cols=37 Identities=19% Similarity=0.340 Sum_probs=22.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032644 32 KLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
.|+..+..|......|..-..+-|++...|+.++++|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444555555555555666667777777777776
No 52
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=93.41 E-value=0.87 Score=31.74 Aligned_cols=34 Identities=21% Similarity=0.603 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 41 QEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 41 ~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.+|.+|.....++.-||.+|..|+++|+.++..
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~ 88 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777777777766554
No 53
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=93.37 E-value=0.56 Score=30.61 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
.||-.|++.||.+|..|+.|.++=....+.|.-|-..+|.=.-.|
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 588899999999999999888777766666666666655444333
No 54
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=93.36 E-value=0.54 Score=37.26 Aligned_cols=19 Identities=16% Similarity=0.323 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhhHHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEK 43 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee 43 (136)
.|+.++..|.++|..|+.+
T Consensus 136 ~~~~~~~~L~~e~~~l~~~ 154 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRD 154 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 55
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.65 Score=35.77 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
++++..+..|+.++..|+.+++.|+.|..|-..-...|+.|..-|+-|+..
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~ 114 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNV 114 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555443
No 56
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=93.20 E-value=0.25 Score=31.61 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=30.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 28 TEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.++.+||+.|..|-..+.+|..-++++. .||+||+.-|+.
T Consensus 4 q~l~kLKe~n~~L~~kv~~Le~~c~~~e-------QEieRL~~LLkq 43 (48)
T 3vmx_A 4 RQILRLKQINIQLATKIQHLEFSCSEKE-------QEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHH-------HHHHHHHHHHHH
Confidence 4678999999999988888877776665 556666665554
No 57
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.15 E-value=0.12 Score=44.47 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=38.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCC
Q 032644 32 KLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSG 80 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p~ 80 (136)
+|......|+.+++.|..|++.+++|...|+.|..+++.|++.+..+|.
T Consensus 46 dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~~~~ 94 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPL 94 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4555556777788888888889999999999999999999999877664
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.09 E-value=0.53 Score=39.25 Aligned_cols=49 Identities=10% Similarity=0.075 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+++..|.++.+...+..+++++.|+.|++.|+.+...+..++++-.+.|
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 3333333333333334444444444444444444333333333333333
No 59
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=93.07 E-value=0.35 Score=33.54 Aligned_cols=49 Identities=18% Similarity=0.389 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+..+++.++.+|..|++.++.|....++-+.+-.+++.|..++.++|-.
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~ 59 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDV 59 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567888999999999999999999999998888999998888877643
No 60
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=93.04 E-value=0.081 Score=35.95 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHH
Q 032644 11 DKATILSDVVRMMEQLRTEAQKLK 34 (136)
Q Consensus 11 DKAsIL~DAir~lkqLr~e~~~Lk 34 (136)
.|.+||..||.|++.|+.+++++.
T Consensus 42 sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 42 TKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999988764
No 61
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=92.99 E-value=0.52 Score=34.89 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEKIK 45 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~ 45 (136)
.|+.+...|+.++..|..++.
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~ 46 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAG 46 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544333
No 62
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.98 E-value=0.9 Score=35.40 Aligned_cols=60 Identities=17% Similarity=0.357 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|.|+=..++.-..-+++||+.+..+.-....+....+||++-...|...+..|++++-.+
T Consensus 15 L~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~L 74 (168)
T 3o0z_A 15 LEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQL 74 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666777788888888888888888888888888888888888888776553
No 63
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=92.98 E-value=0.48 Score=30.02 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQEKI 44 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~ 44 (136)
.+|.||..|+..|..+|++|..+.
T Consensus 3 nlvaqlenevaslenenetlkkkn 26 (49)
T 3he5_A 3 NLVAQLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhcccHHHHHhc
Confidence 367899999999999998887653
No 64
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=92.89 E-value=0.35 Score=33.89 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 38 EDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+.=.....++..+-.+|..||..|+.+++.|+.++..+
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666777778888888888888888877764
No 65
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.84 E-value=0.56 Score=37.03 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEK 51 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EK 51 (136)
..|..|++.++.++..|++++.++..+.
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~i 120 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEI 120 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333
No 66
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.83 E-value=0.46 Score=34.47 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=28.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 31 QKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+|......|+..++++.....+..+.+..|.+++.+|++++..
T Consensus 72 ~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~ 115 (129)
T 2fxo_A 72 DQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSE 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666667666667777777777777777766654
No 67
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=92.68 E-value=1.1 Score=27.95 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
-+.+|...+..++.....+..+...++..-+.+.++......+|.+++.|+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 6 TKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666766666677777777777777777777777777777777654
No 68
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.63 E-value=0.88 Score=38.48 Aligned_cols=44 Identities=23% Similarity=0.380 Sum_probs=24.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 31 QKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
++|+++.+.++..+++-+....||++|++.+++|+..|++.+..
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33334444455555555555566666666666666666665544
No 69
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=92.56 E-value=0.23 Score=33.33 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032644 44 IKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
|+.|..+..+|+.|+..|+.+.+.|+++|.++.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666666666777777777777777776653
No 70
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=92.54 E-value=0.11 Score=33.37 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 44 IKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+.+|..+...|..||..|+.+++.|++++
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555566666666666655443
No 71
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=92.34 E-value=0.23 Score=33.59 Aligned_cols=57 Identities=16% Similarity=0.313 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKA------EKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~------EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|.|.-|++=..+..+|.+++..|..+|+.+.. +..+|+-+|..||-+|.++-.+.+.
T Consensus 7 d~I~~Lk~~d~~f~~L~~eH~~LD~~I~~le~~~~~~~~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 7 DEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp HHHHHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44444444444455555555555555554432 5677777888888777777665543
No 72
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.32 E-value=0.91 Score=35.81 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
|..++..|+.....++.++.+++.+...+..+...+++.+++.+.
T Consensus 37 le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~ 81 (256)
T 3na7_A 37 ALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQK 81 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 73
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=92.30 E-value=0.56 Score=30.03 Aligned_cols=39 Identities=31% Similarity=0.451 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
+.+|+.++..|.+.|+.|.+..+.-..|...|++|..+|
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999887765
No 74
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=92.18 E-value=2.2 Score=31.26 Aligned_cols=48 Identities=19% Similarity=0.246 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032644 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
.|..++=++|.+|++++..|+.+.+.=.........|.+.||.|+..|
T Consensus 33 ~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 33 NMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888899999999999988887776655555555555555555544
No 75
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=91.94 E-value=0.49 Score=33.50 Aligned_cols=41 Identities=17% Similarity=0.363 Sum_probs=30.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 35 QSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 35 ~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.+...|+.+...|..|...|+.|+..+..|++.+.+.++.+
T Consensus 48 ~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566777777777777788888888888888777777765
No 76
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=91.81 E-value=0.27 Score=29.53 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 38 EDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
..|+++..+|-.|+++|++|..+||+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45777777777777777777777764
No 77
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.77 E-value=1.4 Score=31.73 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNE 53 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnE 53 (136)
+|.+||.++..+..++..|+-++..+...-.+
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~ed 52 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMR 52 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777666555444333
No 78
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.69 E-value=0.78 Score=43.65 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=11.8
Q ss_pred HHHHHHhHHHHHHHHHHHHhc
Q 032644 55 RDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 55 rdEk~~Lk~eke~Le~qlk~~ 75 (136)
++..+.|+.|+.+|++|+..+
T Consensus 1022 ~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1022 EQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445666666666666554
No 79
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.58 E-value=1.4 Score=34.76 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 17 SDVVRMMEQLRTEAQKLKQSTEDLQEK----IKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee----~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
.|.-.-+.+|+.|++.+|..+.....+ +..|..|...||+++..|+..+-.||+
T Consensus 59 ~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 59 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666655555 566666666666666666666655554
No 80
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=91.53 E-value=0.7 Score=37.22 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032644 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
++-++.|.|||++.-.--.+...|+.++.+|.+|+|+||..-..|
T Consensus 26 ~~~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kL 70 (206)
T 3oa7_A 26 SERTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNL 70 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc
Confidence 455666777766655555555555555555554444444444333
No 81
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=91.46 E-value=0.38 Score=30.74 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 44 IKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
...|+.|..|||.+...|+.+.+.|..+|
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 82
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=91.33 E-value=0.41 Score=33.51 Aligned_cols=43 Identities=28% Similarity=0.357 Sum_probs=32.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 32 KLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+=|.....++.+..+|+.|-..|+.+...|+.|...|.+.|..
T Consensus 33 krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777778888888888888888888888877776654
No 83
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=91.27 E-value=0.74 Score=31.56 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032644 36 STEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+-+.=.....++..+-.+|..||..|+.+++.|+.++..+.
T Consensus 30 SR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 30 SRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445567777888888899999999999988887753
No 84
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=91.22 E-value=1.1 Score=39.53 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHHhHHHHHHHHHHHHh
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEK-----------NELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EK-----------nELrdEk~~Lk~eke~Le~qlk~ 74 (136)
-++|+.+++.|+++...+..+|..++..+ .+|++|...|+.++..|+.+++.
T Consensus 79 ~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 141 (501)
T 1wle_A 79 LRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQ 141 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777776666555322 35555555555555555444333
No 85
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=91.20 E-value=0.58 Score=30.11 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
|++++..+..|+++...+..++.....|-.+|.+=|.+|..||.---
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYR 48 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYR 48 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35778888888888888888888888888999999999998886443
No 86
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=91.16 E-value=0.21 Score=28.31 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
+-||..|+-+||-+...|.+|.++|
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 4567777777777766666666655
No 87
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=91.08 E-value=0.15 Score=41.28 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=21.7
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHHHH
Q 032644 4 PGRPPKTDKATILSDVVRMMEQLRTE 29 (136)
Q Consensus 4 P~rp~K~DKAsIL~DAir~lkqLr~e 29 (136)
|+-..|+||++||..||.||+.|+..
T Consensus 39 p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 39 PGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 43346999999999999999998753
No 88
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.90 E-value=2.3 Score=30.98 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032644 18 DVVRMMEQLRTEAQKLKQSTEDLQEK----IKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee----~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
|=-.-+.+|+.|++.+|..+...+.+ +..|..|...||+++..|+..+-.||+.
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445667777777777777766654 5667777777777777777777777654
No 89
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=90.80 E-value=2.2 Score=36.77 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKE----------LKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~----------L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
-++|+.+++.|+++...+..+|.. |+.|..+|+++...|+.+...++.++..+
T Consensus 40 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (455)
T 2dq0_A 40 WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888888888777764 45555555666666666666666666653
No 90
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=90.78 E-value=1.6 Score=31.84 Aligned_cols=55 Identities=20% Similarity=0.418 Sum_probs=32.7
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHhHHHHHH
Q 032644 9 KTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQE-------KIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 9 K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~e-------e~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
.|.|.-+|-|-+. |-....+|.++|..|+. .+++|..|...||.||+.|+.|-+-
T Consensus 29 ~mSKqELIqEYl~----LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~ 90 (104)
T 3s9g_A 29 NMSKQELIKEYLE----LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENEL 90 (104)
T ss_dssp TSCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556555555543 44455556666665555 5666777777777777766665443
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.74 E-value=1.2 Score=36.98 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 42 EKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 42 ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+.+....|-+.|++|+.+|+.+++++..++..
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALAS 467 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHh
Confidence 344444555566666777777777777666655
No 92
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=90.69 E-value=0.35 Score=31.65 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 40 LQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 40 L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
=++.+.+|..+-.+|..||..|+++++.|.+++.
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666667777777777777776654
No 93
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=90.68 E-value=1.3 Score=30.97 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=5.1
Q ss_pred HhHHHHHHHHHHHH
Q 032644 60 RLKADKEKLEQQVK 73 (136)
Q Consensus 60 ~Lk~eke~Le~qlk 73 (136)
.++.+.-.++.+++
T Consensus 64 ~~~~ql~e~~dE~~ 77 (96)
T 3q8t_A 64 EFKRQQLELDDELK 77 (96)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 94
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=90.67 E-value=1.9 Score=37.85 Aligned_cols=57 Identities=19% Similarity=0.297 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH-----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 19 VVRMMEQLRTEAQKLKQSTEDLQ-----------EKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~-----------ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
...-+.+|+++.+++.+++..+. ++...|+.|..+|+++...|+.+...++.++..+
T Consensus 82 ~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 82 LREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788888888888777654 3667899999999999999999999999999884
No 95
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.60 E-value=1.1 Score=34.33 Aligned_cols=15 Identities=20% Similarity=0.581 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhcc
Q 032644 62 KADKEKLEQQVKAMS 76 (136)
Q Consensus 62 k~eke~Le~qlk~~~ 76 (136)
.+++.+++++|..++
T Consensus 78 E~~~~~ie~ElEeLT 92 (154)
T 2ocy_A 78 EEEADKLNKEVEDLT 92 (154)
T ss_dssp HTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466677777777643
No 96
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=90.45 E-value=0.57 Score=32.58 Aligned_cols=32 Identities=38% Similarity=0.519 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 43 KIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 43 e~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
++.+|+.|+.-|+.|..+++.-+.|++..++.
T Consensus 38 rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 38 KVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555443
No 97
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=90.41 E-value=2 Score=32.08 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 032644 40 LQEKIKELKA 49 (136)
Q Consensus 40 L~ee~~~L~~ 49 (136)
|+.||+.|+.
T Consensus 76 LqgEI~~Lnq 85 (121)
T 3mq7_A 76 LEGEITTLNH 85 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 98
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=90.39 E-value=0.76 Score=38.64 Aligned_cols=56 Identities=16% Similarity=0.136 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
++.=++.|+.|+.+|+..+....++++.|+....+++...+.|+..+..|+..+..
T Consensus 3 ~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~~ 58 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSR 58 (323)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556778888888888888888888888877777777777777777666665543
No 99
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=90.32 E-value=2.8 Score=28.98 Aligned_cols=50 Identities=24% Similarity=0.365 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+.+-++|++.|+.....|.+-...|+.=.++|..|...|...++.|....
T Consensus 20 ~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554444444555555555555555554433
No 100
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=90.22 E-value=1.4 Score=30.27 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
++.+..++++|++..+......++|......|-.||..|
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L 54 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDL 54 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444
No 101
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=90.21 E-value=2.6 Score=37.18 Aligned_cols=51 Identities=22% Similarity=0.407 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKE----------LKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~----------L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
++|+.+++.|+++...+..+|.. |.+|..+|+++...|+.+...++.++..
T Consensus 43 r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~ 103 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRS 103 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888877777777654 4455556666666666666666666655
No 102
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=90.17 E-value=0.51 Score=28.15 Aligned_cols=26 Identities=15% Similarity=0.371 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 38 EDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
..|+++..+|-.++++|++|-.+||+
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35666777777777777777777664
No 103
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=90.07 E-value=1.4 Score=28.86 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 032644 44 IKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
.+..+.|.+|||-..++|..|++.|
T Consensus 51 l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 51 LRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555555555555555554443
No 104
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=90.04 E-value=0.85 Score=30.16 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
-.++.+||+-|.+|-.++..|+..++|-. .||+||..-|+.
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~e-------QEieRL~~LLkq 50 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKE-------QEIERLNKLLRQ 50 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 34678999999999999998887776654 567777777765
No 105
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.81 E-value=3.4 Score=28.89 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
+..|+.+.....+..+.++.+.+.+..+...+.+|..+|..-+..|+.
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~ 58 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444555555555555555555444444444444444444433333333
No 106
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=89.79 E-value=0.89 Score=30.50 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032644 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
.+.||.|=+-|..|.+|++-+..+.+.|+.|++.|+
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 456778888888888888888888888888887775
No 107
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=89.76 E-value=0.47 Score=31.04 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
+.+|..++..|+.+|..|..++..|
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 108
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=89.71 E-value=0.16 Score=40.75 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=7.2
Q ss_pred HHHhhHHHHHHHHHHHHH
Q 032644 33 LKQSTEDLQEKIKELKAE 50 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~E 50 (136)
|+++|+.|++++..|+.+
T Consensus 24 l~~eN~~Lk~e~~~l~~~ 41 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQL 41 (255)
T ss_dssp --CTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 109
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=89.55 E-value=0.55 Score=27.99 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 032644 40 LQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 40 L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
|+++..+|-.|+.+|++|-.+|+
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Confidence 44444444444444444444443
No 110
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.48 E-value=3.8 Score=28.41 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+.-|+.+.....+....++.+.+.+..+...+.+|...|+.-+..|++++
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555544444443
No 111
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=89.35 E-value=3.3 Score=29.55 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHH
Q 032644 16 LSDVVRMMEQLRTEAQKLKQ-STEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~-~n~~L~ee~~~L~~EKnELrd 56 (136)
-.|+.++.++|..++++++. ..+++++.+..|..-++||..
T Consensus 24 ~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~ 65 (107)
T 2no2_A 24 QVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELAT 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778888888888888763 444455555544444444443
No 112
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=89.35 E-value=3.7 Score=34.96 Aligned_cols=54 Identities=19% Similarity=0.356 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH--------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEK--------IKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee--------~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
--++++.+++.|+++...+..+ ...|+.|..+|+++...|+.+...++.++..+
T Consensus 36 ~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 36 EVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777766666644 34667777777777777777777777777763
No 113
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=89.33 E-value=2.8 Score=29.26 Aligned_cols=42 Identities=17% Similarity=0.386 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 032644 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
++.|+.+.|..|-.++.+.++......||..|...|+.+++.
T Consensus 29 i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 29 LSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666655555554444444444444444443
No 114
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=89.28 E-value=1.8 Score=29.29 Aligned_cols=36 Identities=22% Similarity=0.444 Sum_probs=17.4
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 032644 8 PKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 8 ~K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
+.++|+|=+ .+|+.=..=|+.|+.++..|+++...|
T Consensus 31 ~~~~k~sk~----~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 31 PDSSRHTTL----SLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp SSSCCCTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355665533 455555555555554444444433333
No 115
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=89.23 E-value=2.8 Score=28.54 Aligned_cols=49 Identities=27% Similarity=0.403 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|...++-|..+++.|.+.++....|...+++|-....+.+.+++.+|+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~lek~L~~ 50 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFEKQLLT 50 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666666666666677766654
No 116
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=89.15 E-value=0.97 Score=31.11 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=32.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC
Q 032644 35 QSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAP 78 (136)
Q Consensus 35 ~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~ 78 (136)
.+...+.+++.++..+.++|+++...++++++.++..+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~ 46 (112)
T 1l8d_A 3 KLLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA 46 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44555666677777777888888888888888888888887653
No 117
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=89.08 E-value=0.65 Score=27.83 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 38 EDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
..|+++..+|-.++++|++|-.+||.
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45667777777777777777777764
No 118
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=89.06 E-value=1.9 Score=29.39 Aligned_cols=45 Identities=16% Similarity=0.202 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
+.+++..+..|+.+...+..++.....|-.+|.+=|.+|..||.-
T Consensus 30 l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIat 74 (86)
T 1x8y_A 30 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 74 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 556666666666666666666666666777777777777777643
No 119
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=89.02 E-value=2.8 Score=26.07 Aligned_cols=48 Identities=25% Similarity=0.273 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 032644 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
-+.+.++-.++..++.+...+..++..+..+.|..|++...++.+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666777777777888888888888888888888888877764
No 120
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=89.01 E-value=1.8 Score=29.26 Aligned_cols=42 Identities=14% Similarity=0.262 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADK 65 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ek 65 (136)
++++..+..|+.+...+..++...-.|-.+|.+=|.+|..||
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EI 70 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEI 70 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444444444444444444444444444444444444
No 121
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=88.85 E-value=0.73 Score=27.46 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 39 DLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 39 ~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
.|++++.+|..++++|.+|-.+|+.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5667777777777777777666653
No 122
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=88.76 E-value=0.24 Score=40.79 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=19.5
Q ss_pred CCCchhhhHHHHHHHHHHHHH
Q 032644 8 PKTDKATILSDVVRMMEQLRT 28 (136)
Q Consensus 8 ~K~DKAsIL~DAir~lkqLr~ 28 (136)
.|.||+|||-.||.|||.|+.
T Consensus 47 ~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 47 RKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp SCCCHHHHHHHHHHHHHHHHC
T ss_pred cccCHHHHHHHHHHHHHHhhc
Confidence 699999999999999999874
No 123
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=88.43 E-value=4.9 Score=29.45 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 032644 16 LSDVVRMMEQLRTEAQKLKQSTEDLQE 42 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~e 42 (136)
|.-|=+.|..-..++.+||.+.+.+.+
T Consensus 33 L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 33 LQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677777777777777777666
No 124
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=88.16 E-value=0.85 Score=31.25 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=19.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 35 QSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 35 ~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
.....++.+..+|+.|-..|+.+...|+.|...|.+
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555543
No 125
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=87.79 E-value=3.2 Score=28.44 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
.+||.|+..+..++..|.-++..+.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~ 27 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLA 27 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4566666666666666655554443
No 126
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=87.59 E-value=0.9 Score=27.52 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 032644 39 DLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 39 ~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
.|+++..+|..++++|.+|-.+||
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344555555555555555555554
No 127
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=87.44 E-value=3.6 Score=28.40 Aligned_cols=41 Identities=24% Similarity=0.489 Sum_probs=22.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 32 KLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+|++.+..-+.|+..|+.=.+||++=++.|+.=+.+|+++-
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~ 55 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEV 55 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555543
No 128
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=87.37 E-value=1.4 Score=30.86 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=4.8
Q ss_pred HHHHHHHhHHHHH
Q 032644 54 LRDEKQRLKADKE 66 (136)
Q Consensus 54 LrdEk~~Lk~eke 66 (136)
|++|+..||.+.+
T Consensus 58 l~eEi~~lk~en~ 70 (83)
T 1uii_A 58 KDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 129
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=87.28 E-value=2.7 Score=29.48 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032644 36 STEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
+|+.|.+++..+..|.+.|++|+..|+
T Consensus 39 EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 39 ENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444555555555444
No 130
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=87.10 E-value=2.6 Score=44.74 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032644 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
|-.-|+.++.++++|.++.+.|+++..+...||.+|++|
T Consensus 2026 ~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e 2064 (3245)
T 3vkg_A 2026 LKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTE 2064 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444433
No 131
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=86.99 E-value=4.4 Score=26.35 Aligned_cols=55 Identities=15% Similarity=0.290 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 21 RMMEQLRTEAQKLKQSTED-----LQEKIKELKAE-------KNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~-----L~ee~~~L~~E-------KnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.+|.++|+|-+.+-..|.. .+.++.+|... -...++|...|+..+.+|+.+|..+
T Consensus 9 ~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 9 AAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556677776665544422 22334444433 3334566666777777777776654
No 132
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=86.65 E-value=5.3 Score=26.62 Aligned_cols=45 Identities=16% Similarity=0.219 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
..|+.+.....+....++.+.+........+.+|...|+.-+--|
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l 53 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGT 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444444444444444444443333333333333333333333
No 133
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=86.64 E-value=4.7 Score=29.25 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=23.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 28 TEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
=||+-||+..+.++|..-.+..|..|...|...+|.....|+.++.
T Consensus 30 YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~ 75 (103)
T 4h22_A 30 YQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFA 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555544444444444444444444433
No 134
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=86.55 E-value=1.7 Score=30.63 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHH
Q 032644 51 KNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 51 KnELrdEk~~Lk~eke~Le~q 71 (136)
+.+|.+|+..|..|++.|..+
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e 70 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQE 70 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 135
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=86.47 E-value=4.2 Score=27.40 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
..+++..+..|+++...+..++.....|-.+|.+=|.+|..||.---
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYR 53 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR 53 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777778888888887775443
No 136
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=86.43 E-value=1.2 Score=26.64 Aligned_cols=26 Identities=19% Similarity=0.488 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 38 EDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
..|+++..+|-.++++|.+|-.+||.
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 45677777777777777777777764
No 137
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=86.13 E-value=3.8 Score=26.22 Aligned_cols=43 Identities=16% Similarity=0.280 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+.+|-++++.|......|.+++..|+ .+-..-|.|-.|-++.|
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~-------~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAAR-------SDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 45566666666666666666555544 44445555555554443
No 138
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.01 E-value=7.6 Score=27.76 Aligned_cols=55 Identities=16% Similarity=0.286 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
++=.=+.+|.++......+...|.++..+-..-+-+...++..+..|.|.|-..|
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466667777777777777776666666666666666666666666665544
No 139
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=85.94 E-value=1.3 Score=26.46 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 39 DLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 39 ~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
.|+++..+|-.++.+|++|-.+||.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556666666666666666666653
No 140
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=85.79 E-value=5.8 Score=28.74 Aligned_cols=52 Identities=12% Similarity=0.202 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|.=|+..++.+.+.+..++-+.++...|.+-++-....|+.+...|..||+.
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446677888889999999999999999999999999999999999999987
No 141
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=85.38 E-value=3.5 Score=26.13 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAE 50 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~E 50 (136)
.|+.+|..++..|..+|..|..++..|+.+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777766666544
No 142
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=85.38 E-value=7.3 Score=26.98 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=5.5
Q ss_pred HHHHHHHhhHHHHHH
Q 032644 29 EAQKLKQSTEDLQEK 43 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee 43 (136)
|++.|-.+|..|.+.
T Consensus 10 evEnLi~EN~eLl~T 24 (77)
T 2w83_C 10 EVENLILENTQLLET 24 (77)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 143
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=85.37 E-value=4.5 Score=31.89 Aligned_cols=49 Identities=18% Similarity=0.226 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
+.-+-..+..|+.+|..|+++...|..+-|+|.++.-.+-.+|+++|.+
T Consensus 127 fd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~ 175 (213)
T 1ik9_A 127 IAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETD 175 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444444444444444443
No 144
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=85.17 E-value=2.1 Score=25.92 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032644 39 DLQEKIKELKAEKNELRDEKQRLKAD 64 (136)
Q Consensus 39 ~L~ee~~~L~~EKnELrdEk~~Lk~e 64 (136)
.|+++..+|-.+|++|.+|-.+|+..
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45555666666666666666666543
No 145
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=85.11 E-value=2.1 Score=33.68 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=27.4
Q ss_pred HHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032644 17 SDVVR-MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 17 ~DAir-~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
.++|+ ++.-+-..++.|+++|..|+++...|..|-|+..+
T Consensus 140 ~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 140 AEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555 66777777777777777777777777766665544
No 146
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=85.00 E-value=0.8 Score=27.42 Aligned_cols=18 Identities=17% Similarity=0.434 Sum_probs=7.1
Q ss_pred HHHHHHHHhhHHHHHHHH
Q 032644 28 TEAQKLKQSTEDLQEKIK 45 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~ 45 (136)
.+|+.||..|..|+++++
T Consensus 14 qDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 14 QDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 333444444444443333
No 147
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=84.87 E-value=2.4 Score=34.13 Aligned_cols=43 Identities=21% Similarity=0.298 Sum_probs=39.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032644 29 EAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
-.|.|+++..+.-++..+|+..-++|+.|+..|+....+|+.-
T Consensus 31 ~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 31 ALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 3689999999999999999999999999999999999999853
No 148
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=84.80 E-value=8 Score=26.94 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
.++..++..+...+..+.+++.+|
T Consensus 26 e~~e~~~k~~e~~~~~~E~Ei~sL 49 (101)
T 3u1c_A 26 EQAEADKKAAEERSKQLEDDIVQL 49 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333333333333333333333333
No 149
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=84.69 E-value=2.4 Score=35.60 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
....++|.++...|+..+.....+...|+.....+++.|.+|+++|..+
T Consensus 4 ~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 4 QKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888888888888888888888888877664
No 150
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=84.57 E-value=2.1 Score=29.05 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=31.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
...|.+.+..|+.++-+...-.++|-+.-.....+|++|+.|++.+
T Consensus 9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L 54 (78)
T 3efg_A 9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL 54 (78)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666677777777777777777777765
No 151
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=84.56 E-value=2.3 Score=29.47 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 36 STEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
+|..|-.++..++.|.+.|++|+..|+.
T Consensus 35 EN~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 35 ENEKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555555543
No 152
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.56 E-value=1.6 Score=37.43 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
.+|..++++|..++.-|+.+..+++.|.+.|+.|...++.|+.+|+
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3555555556666666666666666666666666666666666554
No 153
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=84.47 E-value=7.3 Score=26.23 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 45 KELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 45 ~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.+....++|..+.+.++.+.++.-++++.
T Consensus 29 ~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~ 58 (84)
T 1gk4_A 29 ANYQDTIGRLQDEIQNMKEEMARHLREYQD 58 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666777777777666666655
No 154
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=84.41 E-value=1.7 Score=25.95 Aligned_cols=25 Identities=24% Similarity=0.415 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 39 DLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 39 ~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
.|+++..+|-.++++|.+|-.+|+.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4566666666666666666666653
No 155
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=84.39 E-value=2.1 Score=36.26 Aligned_cols=55 Identities=16% Similarity=0.256 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
-.=++.|+.+.++|+++++.++.+.++|+.+-.+...+...|..++..|...++-
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV 63 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRV 63 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 3457788899999999999999999999887777777777787777777666555
No 156
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=84.35 E-value=4.3 Score=28.11 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 032644 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKA 49 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~ 49 (136)
|.||..==++|..++..+++++..|+++++.|+.
T Consensus 29 L~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 29 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666666666643
No 157
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=84.29 E-value=4.9 Score=33.94 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 45 KELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 45 ~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
++++.+++++-.+|..|..+|++|-+
T Consensus 79 re~~~~Rd~~a~~k~~Le~~ierLs~ 104 (302)
T 3ibp_A 79 REAIVERDEVGARKNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 67777777777777777777777654
No 158
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=84.18 E-value=2.3 Score=34.94 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=18.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032644 29 EAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
|++.|++++..|++++.+|+.+++.++..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 66666666666666666666666555553
No 159
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=84.12 E-value=7.3 Score=25.95 Aligned_cols=26 Identities=12% Similarity=0.360 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAE 50 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~E 50 (136)
++..++......+..+.+++..|+..
T Consensus 24 ~~e~~l~~~e~~~~~~E~ev~~L~kK 49 (81)
T 1ic2_A 24 QAEADKKAAEERSKQLEDELVALQKK 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33333333333444444444444433
No 160
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=83.87 E-value=1 Score=31.98 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=13.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccCCC
Q 032644 54 LRDEKQRLKADKEKLEQQVKAMSAPS 79 (136)
Q Consensus 54 LrdEk~~Lk~eke~Le~qlk~~~~~p 79 (136)
|+++...|+.++++++.+++.+..+|
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~~~P 37 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLRSPP 37 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33444444455555555566655555
No 161
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=83.85 E-value=3 Score=30.26 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032644 19 VVRMMEQLRTEAQKLKQS----TEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~----n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
|++++.+....+.++... ...+.+.+..|..|..+|+.|...|+.++...
T Consensus 5 A~~~~~~~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 5 AIEAVEEMERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp GTHHHHHHHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554444444443332 23555555555555555555555555554443
No 162
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=83.85 E-value=8.4 Score=26.45 Aligned_cols=43 Identities=14% Similarity=0.321 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKAD 64 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~e 64 (136)
.+-+|..+++.|+.++..|+-.+.++.-+.+.|...-..+-.+
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554444444444443333333
No 163
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.83 E-value=4.3 Score=29.11 Aligned_cols=58 Identities=9% Similarity=0.249 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHh
Q 032644 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE----KQRLKADKEKLEQQVKA 74 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE----k~~Lk~eke~Le~qlk~ 74 (136)
..+=.-+++||..++.|..++.+|......|.....|++.. ...+...+..||.+|..
T Consensus 32 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~ 93 (129)
T 3tnu_B 32 RNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQK 93 (129)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33445688889999999999999988888888888887654 33556666667666654
No 164
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=83.71 E-value=7.1 Score=26.49 Aligned_cols=48 Identities=23% Similarity=0.369 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.|...++-|..+++.|....+.+..|..-+++|-.. +.+.+++.+|+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~eee~~--~~~~~lek~L~~ 50 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEIS--NLKAAFEKNINT 50 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 355556666666666666666665555555544433 444455555543
No 165
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=83.67 E-value=2.6 Score=35.83 Aligned_cols=53 Identities=23% Similarity=0.433 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH----------HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIK----------ELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~----------~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
-++|+.+++.|+++...+..+|. +|+.|..+|+++...|+.+...++.++..+
T Consensus 39 ~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 39 RREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777765 345566666777777777777777777663
No 166
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=83.46 E-value=4.4 Score=27.67 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032644 40 LQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 40 L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
|+++.+.+..++++|+.++..|+.+++.|
T Consensus 57 L~~~~~~l~~~~~~L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 57 VQAEEQKLISEEDLLRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444555555555555555544
No 167
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.22 E-value=2.4 Score=38.45 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKE 66 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke 66 (136)
.+||..++.||+++..-...|+-|..-..++|.+.++|+.+|+
T Consensus 113 ~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999998888779999999999999999999998874
No 168
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=83.14 E-value=8.2 Score=26.49 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 36 STEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
..-.|+..+..|..|..+||-....+.-+++.+.++-+.
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555554443
No 169
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=83.12 E-value=5.5 Score=29.17 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELR 55 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELr 55 (136)
+..|..++....+....-+.++.+|+.|.-.++
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~ 58 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHK 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555444433
No 170
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=83.08 E-value=5.5 Score=24.80 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
||.|..=+|+|.+.|..|..--.-|+--|.||.=|
T Consensus 5 vkelknyiqeleernaelknlkehlkfakaelefe 39 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLKFAKAELEFE 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHH
Confidence 56777777777777766554444444444444433
No 171
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=83.03 E-value=4.4 Score=27.69 Aligned_cols=31 Identities=19% Similarity=0.386 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 43 KIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 43 e~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+++++..+..+|+++...|+.+++.|+.++.
T Consensus 72 ~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 72 DLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555544444
No 172
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=82.93 E-value=2.8 Score=35.80 Aligned_cols=52 Identities=15% Similarity=0.268 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|..|+.+.++|+.++..++++.++++.+..+...+...|..++..|...++-
T Consensus 12 l~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV 63 (412)
T 3u06_A 12 VVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRV 63 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 5566777777777777777777777766666555666666666665554444
No 173
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=82.79 E-value=2.8 Score=24.59 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=5.4
Q ss_pred HHHHHHhHHHHHHH
Q 032644 55 RDEKQRLKADKEKL 68 (136)
Q Consensus 55 rdEk~~Lk~eke~L 68 (136)
+.|...||-||.-|
T Consensus 15 kkeiaalkfeiaal 28 (33)
T 4dzn_A 15 KKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344443333
No 174
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.76 E-value=5 Score=28.90 Aligned_cols=56 Identities=14% Similarity=0.146 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHh
Q 032644 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE----KQRLKADKEKLEQQVKA 74 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE----k~~Lk~eke~Le~qlk~ 74 (136)
+=.-+++||..++.|..++.++......|.....|++.. ...+...+..||.+|..
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~ 95 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQ 95 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577888888888888888888888888777777653 33455566666666654
No 175
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=82.73 E-value=10 Score=27.37 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHH
Q 032644 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEK----QRLKADKEKLEQQVK 73 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk----~~Lk~eke~Le~qlk 73 (136)
.-+.|+|.||.+||.-||.....+..+.+.=.+|-++--..- .+...+|.+|..-++
T Consensus 38 ~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~DI~~ire~fq 98 (101)
T 4aj5_1 38 DYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQ 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 347899999999999999998888887665555544433322 233456666665443
No 176
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=82.71 E-value=3.1 Score=33.44 Aligned_cols=33 Identities=12% Similarity=0.272 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032644 39 DLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 39 ~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
.+++.+..+..+-++|.+++..|++++++|+.+
T Consensus 96 ~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 96 EAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344445555555555555555555555555555
No 177
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=82.48 E-value=1.2 Score=31.07 Aligned_cols=28 Identities=36% Similarity=0.500 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 36 STEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
+.+-|.+.|++|...-++|+-||+.||.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555566665553
No 178
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=82.38 E-value=1.7 Score=25.82 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 47 LKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 47 L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
|...-.||..||+.|+.|.+||..
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 444445555555555555555543
No 179
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=82.37 E-value=5.2 Score=27.23 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 44 IKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.++..+...|......+..+.++++.+|+.
T Consensus 79 ~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 79 IETLEVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444455555554
No 180
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=82.29 E-value=10 Score=26.20 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032644 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEK 51 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EK 51 (136)
+.-..++..++..+...+..+.+++..|+...
T Consensus 22 ~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKi 53 (101)
T 3u59_A 22 IDRAEQAEADKKQAEDRCKQLEEEQQGLQKKL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33334444444444444444444444444333
No 181
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=82.26 E-value=6.6 Score=26.74 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=28.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.+|+.....-.++++....-..+|..+......+|.+|+.+|.-
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666644
No 182
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=82.08 E-value=6.5 Score=27.43 Aligned_cols=55 Identities=16% Similarity=0.328 Sum_probs=42.6
Q ss_pred HHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 21 RMMEQLRTEAQ---KLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 21 r~lkqLr~e~~---~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.+-.-|.+||+ .+.++....++.+.....+..|-...+..|..|+++|+.+++.+
T Consensus 14 eLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666663 46667777777777888888888889999999999999999885
No 183
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.06 E-value=1.5 Score=37.75 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=22.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCC
Q 032644 32 KLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPS 79 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p 79 (136)
+|+.....|+.+++.|+.|..-+..|+..++.++.+++.+++.+..+|
T Consensus 29 ~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~p 76 (434)
T 4b4t_M 29 ELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLP 76 (434)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 344444455556666666666666666666666666666666655544
No 184
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=82.02 E-value=8.5 Score=33.83 Aligned_cols=25 Identities=8% Similarity=-0.016 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
+.|+.+++.|+++...+..+|..++
T Consensus 47 r~~~~~~~~l~~~rN~~sk~i~~~~ 71 (484)
T 3lss_A 47 RRTQFLTEASKKLINICSKAVGAKK 71 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666665554433
No 185
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=81.87 E-value=6.8 Score=34.42 Aligned_cols=56 Identities=13% Similarity=0.237 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH---------------------------HHHHH----HHH-HHHHHHHHHHhHHHHHH
Q 032644 20 VRMMEQLRTEAQKLKQSTEDLQE---------------------------KIKEL----KAE-KNELRDEKQRLKADKEK 67 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~e---------------------------e~~~L----~~E-KnELrdEk~~Lk~eke~ 67 (136)
..-+.+||++.+.+.+++..+.. +...| .+| ..+|+++...|+.+...
T Consensus 50 ~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le~~~~~ 129 (484)
T 3lss_A 50 QFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQ 129 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667666666666554422 34556 666 77777888888888888
Q ss_pred HHHHHHhc
Q 032644 68 LEQQVKAM 75 (136)
Q Consensus 68 Le~qlk~~ 75 (136)
++.++..+
T Consensus 130 ~~~~~~~~ 137 (484)
T 3lss_A 130 LEEERDKL 137 (484)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888764
No 186
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=80.79 E-value=10 Score=30.45 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAE-KNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~E-KnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
-..+.+|..+++.|+.+.+.++.+++.+..+ ...|..=...++.++++.+..-+.
T Consensus 225 ~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 280 (357)
T 3rrk_A 225 GKAAARMKERARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADM 280 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788889999999888888888888887 777777777777777777665433
No 187
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=80.75 E-value=14 Score=26.70 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|+-|-..|.+-..|+.--....++|.++.+.-++.--+-..+-..|+.||..|+++|+-.
T Consensus 27 LT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda 86 (99)
T 3ni0_A 27 LTRTQDSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENL 86 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555666665544333332222344566777788888877763
No 188
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=80.70 E-value=7.3 Score=26.47 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 032644 48 KAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 48 ~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
+..+..+..+...|...++.++.+
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~ 99 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEK 99 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 189
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=80.66 E-value=6.6 Score=27.06 Aligned_cols=6 Identities=33% Similarity=0.407 Sum_probs=2.2
Q ss_pred HHHHHH
Q 032644 24 EQLRTE 29 (136)
Q Consensus 24 kqLr~e 29 (136)
+-||++
T Consensus 21 ~~Lr~e 26 (75)
T 3a7o_A 21 AILQKE 26 (75)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 190
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=80.55 E-value=8.2 Score=31.07 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=20.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032644 35 QSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 35 ~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
++|+.|.+++..|..|.+.|++|+..|+.=.+.++
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555566666666666666666655444444
No 191
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=80.52 E-value=3.3 Score=33.34 Aligned_cols=41 Identities=32% Similarity=0.418 Sum_probs=17.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHH
Q 032644 28 TEAQKLKQSTEDLQEKIKELKAEKNELR---DEKQRLKADKEKL 68 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELr---dEk~~Lk~eke~L 68 (136)
.|.++|.++++.|+++|..|+.|-.+|+ +.-+.|-.=|++|
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l 158 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERL 158 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433333 3333444444443
No 192
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.48 E-value=2.4 Score=36.37 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 032644 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
..++++++.....+.+.++.|..++|+|.++...++.|+.+
T Consensus 24 ~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~ 64 (405)
T 4b4t_J 24 EQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRL 64 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777777777665555554443
No 193
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=80.43 E-value=9.9 Score=28.33 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|-.++...|+++..|-...+.+.+|+.|+.|....--...-++-|+++.
T Consensus 48 Ll~~LsaIk~ry~~L~~q~~~iaaeQke~~d~ir~tL~~tm~miQ~LQ~ 96 (123)
T 4aj5_K 48 LLKELSVIKSRYQTLYARFKPVAVEQKESKSRICATVKKTMNMIQKLQK 96 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788999999999999999999999999988777777777777776
No 194
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=80.28 E-value=7.6 Score=27.10 Aligned_cols=36 Identities=11% Similarity=0.239 Sum_probs=13.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 032644 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADK 65 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ek 65 (136)
+..|+++...+..++.....|-.+|.+=|..|..||
T Consensus 46 i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EI 81 (95)
T 3mov_A 46 LTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEI 81 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344444444444443
No 195
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=80.11 E-value=4.6 Score=28.28 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 36 STEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
+|+.|.+.+..|+.|.+.|+.|+..|+.
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444455554443
No 196
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=80.07 E-value=5.2 Score=24.15 Aligned_cols=26 Identities=31% Similarity=0.504 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
++||...+++|..++..|+.+...|+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56777777777777777776665554
No 197
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=80.07 E-value=3.5 Score=24.92 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKA 49 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~ 49 (136)
++||-.++++|-.++..|+.+...|+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355666666665555555555555543
No 198
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=80.06 E-value=1.6 Score=35.11 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 43 KIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 43 e~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+.++++.+.+.|++|++.+++++++|+.++.
T Consensus 149 ~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~ 179 (250)
T 2ve7_C 149 QYKSSADKMQQLNAAHQEALMKLERLEKEVD 179 (250)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333344444444444444444433
No 199
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=79.88 E-value=7.4 Score=41.47 Aligned_cols=59 Identities=17% Similarity=0.332 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|..|-.-+...+.+.++.+++...|++++..|+.+-+++..||..|+.|.+..+..|..
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666677777777777777788888888888888888888877777666554
No 200
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=79.78 E-value=11 Score=32.42 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----------HHHHHHHHhHHHHHHHHHHHHhcc
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKN----------ELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKn----------ELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
.-|..|-.+-.+|..+.+.|+.+.+.+..+.. +|.+|...|+.++..|+.+++.+.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELK 96 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555666666555554432 445555556666666666666543
No 201
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=79.63 E-value=9.6 Score=24.30 Aligned_cols=22 Identities=5% Similarity=0.160 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIK 45 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~ 45 (136)
.+|-.++..|+.....|..+++
T Consensus 14 ~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 14 QTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 202
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=79.59 E-value=5.4 Score=27.95 Aligned_cols=29 Identities=17% Similarity=0.278 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 032644 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKI 44 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~ 44 (136)
|.||..==++|..++..+++++..|.+++
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en 61 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKEN 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 203
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=79.31 E-value=5.5 Score=28.20 Aligned_cols=61 Identities=21% Similarity=0.329 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHH-HHHHHHHHHHHHHHHhHH--HHHHHHHHHHhc
Q 032644 15 ILSDVVRMMEQLRTEAQKLK--QSTEDLQEKIK-ELKAEKNELRDEKQRLKA--DKEKLEQQVKAM 75 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk--~~n~~L~ee~~-~L~~EKnELrdEk~~Lk~--eke~Le~qlk~~ 75 (136)
|+.-...=|.+|..+..+|- .....|+..++ +|.-..|.|++|...|-+ .+|||-.++..+
T Consensus 11 li~t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l 76 (97)
T 1hs7_A 11 LIETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNL 76 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHH
Confidence 44444444445555555553 35667888888 888888888888877766 888888887763
No 204
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=79.25 E-value=7 Score=27.54 Aligned_cols=34 Identities=15% Similarity=0.283 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
+.+|..+.++|+.+...|+..+..|+...+|+++
T Consensus 3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~ 36 (133)
T 1fxk_C 3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEI 36 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555544443
No 205
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=79.11 E-value=6.9 Score=31.03 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEK 58 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk 58 (136)
+|..|..|...|..+++..+.||+.|+.+...|+..-
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556666666666666666666665555544444433
No 206
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=79.09 E-value=15 Score=30.23 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=7.6
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 032644 53 ELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 53 ELrdEk~~Lk~eke~Le~ql 72 (136)
||.-|...|.+++++++.|+
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 447 ELEGEITTLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 207
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=78.98 E-value=11 Score=31.99 Aligned_cols=57 Identities=19% Similarity=0.342 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032644 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAE--------KNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~E--------KnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+.-|..|-.+-.++..+.+.|+.+.+.+..+ ..+|++|-..|+.++..|+.+++.+.
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKE 91 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666533 34666666677777777777776654
No 208
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=78.77 E-value=13 Score=29.56 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=31.8
Q ss_pred CchhhhHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 10 TDKATILSDV-VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 10 ~DKAsIL~DA-ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+++|-+|..- +.=+..|..|++....+++.|++++..|+.....+.+..+.-...++=.+.-+.-
T Consensus 15 l~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~ 80 (190)
T 4emc_A 15 IDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEY 80 (190)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHH
Confidence 3444444332 2235566666666666666666666666666655555554433333333333333
No 209
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=78.76 E-value=9 Score=26.25 Aligned_cols=49 Identities=24% Similarity=0.351 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
++|-..+++|..+.+.|+.+..-|-+|-+. =.+.||.-+.+||.+++..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~s---sQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYES---MQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccc
Confidence 467778889999999999888888776654 4468999999999999973
No 210
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=78.71 E-value=5 Score=23.50 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=9.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 032644 29 EAQKLKQSTEDLQEKIKELKAE 50 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~~E 50 (136)
|+.-||.++..|..||..|+-|
T Consensus 3 eiaalkqeiaalkkeiaalkfe 24 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFE 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 211
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=78.47 E-value=4.3 Score=32.26 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 37 TEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 37 n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
.+.|.+++..|+.+..+|+|...++.+|.+++..
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~Rk 94 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRR 94 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555443
No 212
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=78.26 E-value=1.4 Score=30.72 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032644 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
|.|++-||+.+..|.+++..|+.|-+=||.
T Consensus 14 REEVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 14 REEVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555543
No 213
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=78.25 E-value=7.4 Score=29.27 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=22.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHhc
Q 032644 28 TEAQKLKQSTEDLQEKIKELKAEKNELRD-------EKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELrd-------Ek~~Lk~eke~Le~qlk~~ 75 (136)
.+.++++.++..|......+..|++.|++ -....++++.+++++|..+
T Consensus 25 ~~le~l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 25 ENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 79 (135)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444 2233344555666666554
No 214
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=78.15 E-value=1.6 Score=30.92 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 44 IKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
.+.|+.+.++|++|...|+.|+++|++
T Consensus 9 ~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 9 MKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355677777788888888888887765
No 215
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=78.08 E-value=6.1 Score=33.96 Aligned_cols=64 Identities=14% Similarity=0.243 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCC
Q 032644 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQE-KIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPS 79 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~e-e~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p 79 (136)
+-|.+.+..+++++...+.+++-.+-+.+ +.. ..-+.+.++|...|+.++++|+.+|+.+-.|.
T Consensus 53 ~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D--~e~~~~a~~e~~~l~~~l~~le~~l~~lLlp~ 117 (371)
T 1zbt_A 53 ANSRETVAVYREYKQVVQNIADAQEMIKDASGD--PELEEMAKEELKNSKVAKEEYEEKLRFLLLPK 117 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44555555555555555544444443332 110 01245677888999999999999999865443
No 216
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=78.08 E-value=13 Score=32.74 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHHhcc
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEK----------NELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EK----------nELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
..|-.+-.+|..+.+.|+.+.+.+..+. .+|.+|...|+.++..|+.+++.+.
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~ 98 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEAD 98 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555442 2355555666666666776666643
No 217
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=77.97 E-value=6.2 Score=30.63 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=20.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 34 KQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 34 k~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
+...+.|......|..++++|..+++.|...++.|+.
T Consensus 48 ~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 48 ARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555555555555555555555
No 218
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=77.88 E-value=5.6 Score=28.87 Aligned_cols=28 Identities=14% Similarity=0.289 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEK 51 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EK 51 (136)
.+.+.+++.|++++..|...+..|..||
T Consensus 14 ~~~~~ei~~L~~ei~eLk~~ve~lEkER 41 (106)
T 4e61_A 14 TKSQETIGSLNEEIEQYKGTVSTLEIER 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 219
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=77.75 E-value=3.6 Score=24.54 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Q 032644 43 KIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 43 e~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
++....++.++|+..|..|..++--
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 3444444455555555555555433
No 220
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=77.73 E-value=13 Score=24.90 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+|..|.+.+...+..|++++..++.+......|-+.|-.=|-.|+.++-.
T Consensus 2 ~l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIat 51 (74)
T 2xv5_A 2 GSARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHA 51 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777888888888888888888888877777888888888888888766
No 221
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=77.69 E-value=8.9 Score=29.96 Aligned_cols=31 Identities=6% Similarity=0.116 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 032644 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIK 45 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~ 45 (136)
+|+.|-+-|+.|+.++.+|.+++....++.+
T Consensus 129 li~~AertV~kLqkeiD~LEDeL~~eKek~k 159 (175)
T 3mud_A 129 LICYCLDTTAKNEKSIDDLEEKVAHAKEENL 159 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444444433333
No 222
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=77.63 E-value=8.3 Score=33.26 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
.-.+++..+.+..|+.+|+..+..-++.++.|....++++...+.|+..+..|+.
T Consensus 79 ~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 79 IEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455888888888888888877777777887777666665555555555544443
No 223
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=77.61 E-value=13 Score=31.65 Aligned_cols=77 Identities=22% Similarity=0.253 Sum_probs=42.2
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HH-HHHHHHHHHHHhHHHHHHHHHHHHhccCCC
Q 032644 3 EPGRPPKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKEL-KA-EKNELRDEKQRLKADKEKLEQQVKAMSAPS 79 (136)
Q Consensus 3 eP~rp~K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L-~~-EKnELrdEk~~Lk~eke~Le~qlk~~~~~p 79 (136)
||+-.-..+|+.-|+--..-|+.+-...++++...+.+.+-..-+ .. -+.+..+|...|+.++++|+.+|+.+-.|.
T Consensus 21 ~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~~~~~le~~l~~lLlp~ 99 (354)
T 3d5a_X 21 DPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLARKEALEKELERHLLPK 99 (354)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 454433445554444444444444444444444333333322211 11 235667888999999999999999865543
No 224
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=77.50 E-value=3 Score=28.11 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=28.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032644 11 DKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 11 DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
|.+-|..|--.++..|....+.++.++.+|+..+.++..+.++|+..
T Consensus 55 G~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 55 GNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445566666666666666666666666666666666554
No 225
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=77.47 E-value=4.3 Score=24.26 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 39 DLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 39 ~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
.|+++..+|-.++.+|.+|-.+|+.
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556666666666666666666653
No 226
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=77.46 E-value=8.2 Score=29.94 Aligned_cols=37 Identities=14% Similarity=0.231 Sum_probs=15.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 032644 31 QKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
+.|+.....|+.....|+.++++|..+...|+..+.+
T Consensus 52 ~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k 88 (174)
T 2p22_A 52 EIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAK 88 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443333
No 227
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=77.35 E-value=2.9 Score=32.00 Aligned_cols=19 Identities=16% Similarity=-0.053 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhHHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEK 43 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee 43 (136)
.|..+.++|+.++.-++..
T Consensus 37 ~le~e~~kl~~e~~i~eas 55 (146)
T 2xnx_M 37 EKELEEKKKALELAIDQAS 55 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4444555555444444443
No 228
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=77.04 E-value=1.9 Score=35.43 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 032644 36 STEDLQEKIKELKAEKNELRDEK 58 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk 58 (136)
+.+.|+++++.|..|..+|+.++
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 229
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=76.64 E-value=18 Score=27.67 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 032644 43 KIKELKAEKNELRDEK 58 (136)
Q Consensus 43 e~~~L~~EKnELrdEk 58 (136)
.++.|..|.++||.+.
T Consensus 114 kI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 114 KINAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3555555555555543
No 230
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=76.58 E-value=11 Score=25.15 Aligned_cols=42 Identities=24% Similarity=0.380 Sum_probs=33.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032644 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
-=++|.-..+-+.+|+.|..=.|.|-||...+.+++.+|+.+
T Consensus 15 ylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 15 YLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 345677777778888888888888888888888888888765
No 231
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=76.25 E-value=3.3 Score=29.64 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNEL 54 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnEL 54 (136)
+|+.+.++.++++..|++.+..|+.|.+..
T Consensus 86 ~l~~~~~~e~~~~~~L~~~i~~Le~el~~~ 115 (117)
T 3kin_B 86 EWKKKYEKEKEKNKALKSVIQHLEVELNRW 115 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555555444443
No 232
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=76.25 E-value=6 Score=31.00 Aligned_cols=33 Identities=9% Similarity=0.285 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 032644 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
||.-++.-+..|+.++++|.++|+.|+.|-...
T Consensus 146 lid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 146 LICYCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666666666666666665443
No 233
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=76.24 E-value=18 Score=25.66 Aligned_cols=9 Identities=33% Similarity=0.353 Sum_probs=3.2
Q ss_pred hHHHHHHHH
Q 032644 61 LKADKEKLE 69 (136)
Q Consensus 61 Lk~eke~Le 69 (136)
|.+.+..|+
T Consensus 87 l~~~~~~l~ 95 (107)
T 2no2_A 87 WAAEFAELE 95 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 234
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=76.14 E-value=4.6 Score=24.65 Aligned_cols=16 Identities=38% Similarity=0.476 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHHHHHH
Q 032644 36 STEDLQEKIKELKAEK 51 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EK 51 (136)
.+..|+++...|+.||
T Consensus 16 Qi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 16 QILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 235
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=76.12 E-value=7.9 Score=23.44 Aligned_cols=28 Identities=36% Similarity=0.506 Sum_probs=16.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032644 28 TEAQKLKQSTEDLQEKIKELKAEKNELR 55 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELr 55 (136)
.|-++|-.+++.-.++|..|+.|-.||+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4556666666666666666666555554
No 236
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=76.05 E-value=19 Score=25.68 Aligned_cols=16 Identities=19% Similarity=0.412 Sum_probs=8.2
Q ss_pred HHHhHHHHHHHHHHHH
Q 032644 58 KQRLKADKEKLEQQVK 73 (136)
Q Consensus 58 k~~Lk~eke~Le~qlk 73 (136)
+..|+++++.|..+|-
T Consensus 85 r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 85 RLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555443
No 237
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=75.63 E-value=14 Score=25.79 Aligned_cols=40 Identities=25% Similarity=0.320 Sum_probs=21.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 31 QKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
++|++-.+.|++++..-+.|..+|.++..+.+.-|.+|+.
T Consensus 40 EqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 40 EQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444434444556666665666666665555555555543
No 238
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=75.61 E-value=5 Score=29.15 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHh
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQ---RLKADKEKLEQQVKA 74 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~---~Lk~eke~Le~qlk~ 74 (136)
-|+.|+...+.+...|.+++.+|+.....|..|.. .--.+||-|=|+...
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~~ 60 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQD 60 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666655543 112345555554433
No 239
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=75.28 E-value=1.9 Score=34.41 Aligned_cols=43 Identities=33% Similarity=0.402 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
.+.+.-+.+|+.|.++||++|..|+.+...+. +|+.|+.+|+.
T Consensus 15 ~~~~~~~~~l~~eN~~Lk~e~~~l~~~~~~~~----~l~~En~rLr~ 57 (255)
T 2j5u_A 15 VDGVVDLKNTYTENQHLKERLEELAQLESEVA----DLKKENKDLKE 57 (255)
T ss_dssp -----------CTTTTHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 34556667788888888888888877765443 55555555544
No 240
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=75.04 E-value=18 Score=24.97 Aligned_cols=41 Identities=24% Similarity=0.350 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032644 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
++-+..|.|||.---...+++..|++++...|.+...+.++
T Consensus 26 ~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~ee 66 (77)
T 3mtu_E 26 SERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQM 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 56678888888888888888888877776666555555554
No 241
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=74.97 E-value=14 Score=24.61 Aligned_cols=45 Identities=13% Similarity=0.343 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQE------KIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~e------e~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
+..|+.+.+.|..++..++. +++.||.+|=.|+||..++...-.+
T Consensus 19 f~~L~~eH~~LD~~I~~le~~~~~~~~l~~LKk~KL~LKDeI~~lL~~~~~ 69 (76)
T 1zhc_A 19 FDKIFEKHNQLDDDIKTAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYRE 69 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45566666666666666654 5888888888888888877665443
No 242
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=74.69 E-value=6.7 Score=23.40 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
+||-..+++|=.+|..|+.+...|
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 444455555544444444444433
No 243
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=74.61 E-value=8.8 Score=26.42 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 39 DLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 39 ~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.|+++.+.-..|...|+|....--.+.|+|+.++-.
T Consensus 22 ~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiis 57 (75)
T 3a7o_A 22 ILQKELKSKEQEIRRLKEVIALKNKNTERLNDELIS 57 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHH
Confidence 333333333344444444444444445555555444
No 244
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=74.52 E-value=17 Score=24.43 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032644 26 LRTEAQKLKQSTEDLQEKIKELKAEK 51 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EK 51 (136)
++.|++.|...++.|+.++..|..+.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554444
No 245
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=74.32 E-value=14 Score=23.45 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
+-.+|-..++.|+.++..++.||..|.
T Consensus 12 ~n~~L~~kv~~Le~~c~~~eQEieRL~ 38 (48)
T 3vmx_A 12 INIQLATKIQHLEFSCSEKEQEIERLN 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 334556666666666666666665554
No 246
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=74.13 E-value=8.1 Score=28.01 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 44 IKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
..-|...+.+|+++...|+.-++.|+..+..
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~ 127 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKIAK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555555555544444
No 247
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=73.84 E-value=1.8 Score=31.42 Aligned_cols=30 Identities=27% Similarity=0.350 Sum_probs=17.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032644 32 KLKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
.|.+..+.|+++.++|+.|..+|+.+....
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666666666655544
No 248
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=73.65 E-value=24 Score=27.07 Aligned_cols=44 Identities=18% Similarity=0.215 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELK-------AEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~-------~EKnELrdEk~~Lk~eke~ 67 (136)
++-|.+...|+++....+.+++.|- +.-++|.+|...|+.++..
T Consensus 81 ~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 81 DDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555455555554443 3444555555555554433
No 249
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=73.55 E-value=9.8 Score=33.11 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADK 65 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ek 65 (136)
+|..+||.++.-||..+..-...++-|+.-...+|.+.++|+.+|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777655444467777777777777777776655
No 250
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=73.47 E-value=12 Score=26.14 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAE 50 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~E 50 (136)
.+|+++++.|+++...|+.++..+..+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666554
No 251
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=73.38 E-value=5.9 Score=30.28 Aligned_cols=9 Identities=33% Similarity=0.464 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 032644 66 EKLEQQVKA 74 (136)
Q Consensus 66 e~Le~qlk~ 74 (136)
+.|+.||..
T Consensus 132 ~~lq~ql~~ 140 (154)
T 2ocy_A 132 DTLTLQLKN 140 (154)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 252
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=73.32 E-value=14 Score=23.09 Aligned_cols=13 Identities=38% Similarity=0.555 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHh
Q 032644 24 EQLRTEAQKLKQS 36 (136)
Q Consensus 24 kqLr~e~~~Lk~~ 36 (136)
.-|.+|.|-||++
T Consensus 3 aalkselqalkke 15 (48)
T 1g6u_A 3 AALKSELQALKKE 15 (48)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 3567788888764
No 253
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=73.27 E-value=4 Score=25.93 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKI 44 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~ 44 (136)
|.++..+.+.|..+|..|++++
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~ 50 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKV 50 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333333
No 254
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=72.68 E-value=15 Score=23.07 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=26.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+..|..+..+|+.+...|+..----.|-.+-|+.||.+|...+
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4567777777777777776543333444555666666665443
No 255
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=72.65 E-value=21 Score=25.95 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAE 50 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~E 50 (136)
++.|..+...|++..+++..+-.+|...
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~ 35 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDF 35 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333
No 256
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=72.63 E-value=15 Score=24.76 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+|...+.+|....+-++..+.+|...--+.+.+..+|+.+...|..+++.+.
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667788888888888888888888888888888888888888888888764
No 257
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=72.54 E-value=30 Score=28.46 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 47 LKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 47 L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|..++..-......|+.||-+|+++|+.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 434 LDAEKAQGQKKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333444566666666666654
No 258
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=72.51 E-value=16 Score=23.22 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=20.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 33 LKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
|++.+..|..+.-.|...-..|..-...|+.||.+||+++-
T Consensus 8 lrkkiarlkkdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 8 LRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444333322222233334567788888887763
No 259
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=72.37 E-value=4.9 Score=30.18 Aligned_cols=31 Identities=13% Similarity=0.296 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNE 53 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnE 53 (136)
|+++.+++..++.+..+|..+|+.+....+.
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445555555555555555555554443333
No 260
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=72.23 E-value=3.4 Score=26.25 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=4.8
Q ss_pred HHHHHHhHHHHHHHH
Q 032644 55 RDEKQRLKADKEKLE 69 (136)
Q Consensus 55 rdEk~~Lk~eke~Le 69 (136)
..|+..|+.++++|+
T Consensus 40 ~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 40 LRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 261
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=72.21 E-value=23 Score=25.05 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032644 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKE 66 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke 66 (136)
++-+..|.|||..--..-.+...|...-..|.+|++.|---++.|=.++.
T Consensus 22 serte~lqqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig 71 (97)
T 1no4_A 22 SERTEALQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIG 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhc
Confidence 45677788888776666666666666666677777776666666655543
No 262
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=72.04 E-value=16 Score=25.57 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 39 DLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 39 ~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
.|++.++.|.....++++....+..++.++.+
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~~ 130 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMKLSPQAEELLA 130 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333334444444444444444433
No 263
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=71.94 E-value=8.6 Score=22.77 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
+||-..+++|-.++..|+.++..|+
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4555555555555555555544443
No 264
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=71.86 E-value=3.1 Score=27.44 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.3
Q ss_pred CCCchhhhHHHHHHHHHHHHHHH
Q 032644 8 PKTDKATILSDVVRMMEQLRTEA 30 (136)
Q Consensus 8 ~K~DKAsIL~DAir~lkqLr~e~ 30 (136)
.|..|..||-.||.|+..|...+
T Consensus 44 ~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 44 QRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999998643
No 265
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=71.12 E-value=36 Score=28.63 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=22.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhccCCCC
Q 032644 52 NELRDEKQRLKADKEKLEQQVKAMSAPSG 80 (136)
Q Consensus 52 nELrdEk~~Lk~eke~Le~qlk~~~~~p~ 80 (136)
.|+.-++..+-..+++|+.|+..++.|-|
T Consensus 79 re~~~~Rd~~a~~k~~Le~~ierLs~pgg 107 (302)
T 3ibp_A 79 REAIVERDEVGARKNAVDEEIERLSQPGG 107 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 36666666777888999999999887654
No 266
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=70.96 E-value=5 Score=22.74 Aligned_cols=8 Identities=50% Similarity=0.592 Sum_probs=3.0
Q ss_pred HHHhhHHH
Q 032644 33 LKQSTEDL 40 (136)
Q Consensus 33 Lk~~n~~L 40 (136)
||..|..|
T Consensus 5 lkqknarl 12 (28)
T 3ra3_B 5 LKQKNARL 12 (28)
T ss_dssp HHHHHHHH
T ss_pred HHHhhhHH
Confidence 33333333
No 267
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=70.91 E-value=21 Score=27.57 Aligned_cols=52 Identities=15% Similarity=0.338 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 032644 26 LRTEAQKLKQSTEDLQEKIK-------ELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~-------~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
|.+.++.|+++-..|+++.+ +|..+.|.|+=|...|...+++.-.-|+..++
T Consensus 101 LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K~rD~yl~wL~~~Gv 159 (170)
T 3l4q_C 101 LKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGA 159 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHcCC
Confidence 44555555555555555554 44455555555555555555544444555444
No 268
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=70.87 E-value=32 Score=26.07 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
|-|-|..|..++.+|.++...-.++.+.+..+....-.+...+.+.--.|++++.
T Consensus 96 AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~ 150 (155)
T 2efr_A 96 AERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVA 150 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 3345555555555555555555555555555555444455555555555555543
No 269
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=70.72 E-value=17 Score=23.73 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKI 44 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~ 44 (136)
|-.|+.|++.|+.+|..|....
T Consensus 12 VYaLkDqV~eL~qe~k~m~k~l 33 (56)
T 2w6b_A 12 VYALKDEVQELRQDNKKMKKSL 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888887776544
No 270
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=70.69 E-value=9.6 Score=22.58 Aligned_cols=24 Identities=0% Similarity=0.080 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
+||-..+++|=.+|..|+.+...|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444455555544444444444433
No 271
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=70.58 E-value=8.7 Score=26.44 Aligned_cols=44 Identities=20% Similarity=0.361 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032644 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
+..-|+.+..+-+.|+.....|+..+.+=+.+.+-++.|...+-
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777777777888888777777777777777766665443
No 272
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=70.31 E-value=2.9 Score=26.90 Aligned_cols=23 Identities=17% Similarity=0.003 Sum_probs=20.8
Q ss_pred CCCchhhhHHHHHHHHHHHHHHH
Q 032644 8 PKTDKATILSDVVRMMEQLRTEA 30 (136)
Q Consensus 8 ~K~DKAsIL~DAir~lkqLr~e~ 30 (136)
.|..|..||--||.|+..|+..+
T Consensus 35 ~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 35 QKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999998754
No 273
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.24 E-value=24 Score=24.32 Aligned_cols=28 Identities=29% Similarity=0.467 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 48 KAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 48 ~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
..+.++||.....+..|+.+|+.++..|
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~dnl 82 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERDNL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777776654
No 274
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=70.10 E-value=7.4 Score=31.13 Aligned_cols=47 Identities=9% Similarity=-0.011 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032644 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKE 66 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke 66 (136)
+..+.++..+.+.++++...|+++.++++++.++|+.+.....++..
T Consensus 140 ~~~~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~te~~ 186 (250)
T 2ve7_C 140 RETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTI 186 (250)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 33445555666666666666666666666666666666555555543
No 275
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=69.88 E-value=12 Score=28.56 Aligned_cols=23 Identities=9% Similarity=-0.028 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Q 032644 26 LRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
.+..++.|..+...|.++...+.
T Consensus 31 ~~a~~~~le~e~~kl~~e~~i~e 53 (146)
T 2xnx_M 31 HRATALEKELEEKKKALELAIDQ 53 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 276
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=69.60 E-value=18 Score=22.60 Aligned_cols=45 Identities=31% Similarity=0.426 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+|-..+++|..+.+.|+....-|-+|-+. -...||.-+.+||.++
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~s---sq~KlKqRit~lE~~v 46 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNA---TQMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcC
Confidence 46677888888888888888777766554 3467888888888763
No 277
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.15 E-value=7.8 Score=33.16 Aligned_cols=45 Identities=11% Similarity=0.296 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCC
Q 032644 36 STEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSG 80 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p~ 80 (136)
.+..++.++++.....+.|+.+...|+.+...++.+++.+..+|.
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~ 70 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGS 70 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 445566666666666677777777777777777777777665553
No 278
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=68.97 E-value=7.2 Score=23.26 Aligned_cols=25 Identities=8% Similarity=0.328 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
+||-..++.|=.+|..|+.|..-|+
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5566666666666666665555444
No 279
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=68.54 E-value=3 Score=34.95 Aligned_cols=47 Identities=23% Similarity=0.200 Sum_probs=30.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 28 TEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.|+.+|++.+..+++.++.|....++++.+.+.|+..+..|+..++.
T Consensus 4 ~~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~~~ 50 (319)
T 1fzc_C 4 EEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 50 (319)
T ss_dssp ------CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46667777777888888888777777777777777777777665544
No 280
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.31 E-value=6.3 Score=33.79 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
.+|+.+.+-|+.++..|+++...++.|.+.|+++...++.++.+
T Consensus 28 ~~l~~r~~~le~e~~~l~~e~~r~~~e~~~~~~~~~~~~~~i~~ 71 (434)
T 4b4t_M 28 QELQTRAKLLDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKN 71 (434)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555566666666666666666666666665555555444
No 281
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=68.05 E-value=27 Score=24.24 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=18.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 32 KLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
.|-.+...|.-.+.+|..||+.-.-...+-|.|+..|++||.
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe 64 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444444444433333344444445555543
No 282
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=67.03 E-value=11 Score=35.00 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=14.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHhc
Q 032644 54 LRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 54 LrdEk~~Lk~eke~Le~qlk~~ 75 (136)
-|+....+++++++|+.++..+
T Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~ 861 (862)
T 1gax_A 840 EEARLKENLEQAERIREALSQI 861 (862)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444556777888888887764
No 283
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=66.96 E-value=13 Score=21.68 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEK 51 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EK 51 (136)
|.||..|+..-.++|-.|+.+...|.-|+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 45677777777777777766666665443
No 284
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=66.88 E-value=10 Score=29.14 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=31.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032644 28 TEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
.++++|+++...++++|+.-+.+..||......+|.=.+|=+
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~ 46 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNR 46 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888777777665543
No 285
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=66.75 E-value=8 Score=30.63 Aligned_cols=36 Identities=19% Similarity=0.253 Sum_probs=23.7
Q ss_pred HHHHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032644 17 SDVVR-MMEQLRTEAQKLKQSTEDLQEKIKELKAEKN 52 (136)
Q Consensus 17 ~DAir-~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKn 52 (136)
+++|| ++.....++..|+++|+.|++|...|..|.|
T Consensus 149 aE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~e~~ 185 (186)
T 3q4f_C 149 AEVIRELICYCLDTIAENQAKNEHLQKENERLLRDWN 185 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34443 4455667777777777777777777776654
No 286
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=66.72 E-value=13 Score=22.15 Aligned_cols=24 Identities=4% Similarity=0.095 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
+||-..+++|=.+|..|+.+...|
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 444444444444444444444333
No 287
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=66.39 E-value=36 Score=25.01 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHH-hhHHHHHHHHHHH--------HHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032644 22 MMEQLRTEAQKLKQ-STEDLQEKIKELK--------AEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~-~n~~L~ee~~~L~--------~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
-++.|+.|++.|+. +.-.+-+.+.+-. .|-..-+++...+...+..|+.+|....
T Consensus 10 g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gDlsENaeY~aak~~q~~~e~ri~~Le~~L~~a~ 73 (158)
T 1grj_A 10 GAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQ 73 (158)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHHHHHHhccchhhHhhHHHHHhcccccccchhhhHHHHHHHHHHHHHHHHHHHhhCe
Confidence 35677777777776 4444444444332 4555567777888889999999998853
No 288
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=66.28 E-value=13 Score=26.91 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 36 STEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
..+.|++.++.|.....++++....+...+.++.+++
T Consensus 106 ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~ 142 (151)
T 2zdi_C 106 RLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQ 142 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555555555555543
No 289
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=66.19 E-value=4.8 Score=22.80 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=5.5
Q ss_pred HHHhHHHHHHHHHH
Q 032644 58 KQRLKADKEKLEQQ 71 (136)
Q Consensus 58 k~~Lk~eke~Le~q 71 (136)
+.+||.||.-||-+
T Consensus 9 narlkqeiaaleye 22 (28)
T 3ra3_B 9 NARLKQEIAALEYE 22 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 33344444433333
No 290
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=65.65 E-value=15 Score=23.76 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032644 36 STEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
++..|-.....|+.|-.-||.|...=-+.+.+||.+
T Consensus 4 sYdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e 39 (54)
T 1deb_A 4 SYDQLLKQVEALKMENSNLRQELEDNSNHLTKLETE 39 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh
Confidence 455666666777777777777666555666666654
No 291
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=65.51 E-value=8.5 Score=27.31 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
+|+.|+.+|.++-..|-+-|+.+.
T Consensus 10 ~Lk~El~~L~~~E~~LD~~i~~~~ 33 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDHLMNICT 33 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 292
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=65.40 E-value=14 Score=31.34 Aligned_cols=54 Identities=19% Similarity=0.395 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHHhcc
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEK----------NELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EK----------nELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
|..|-.+-.++..+.+.|+.+.+.+..+. .+|.+|...|+.++..|+.+++.+.
T Consensus 32 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 95 (425)
T 2dq3_A 32 VLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVE 95 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555442 2344445555666666666666543
No 293
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=65.36 E-value=42 Score=25.35 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=14.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhc
Q 032644 53 ELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 53 ELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
....|++.+...|..|..|++.+
T Consensus 81 q~~~ek~~r~e~k~~l~~ql~qv 103 (150)
T 4dci_A 81 QVAGKRSELEEQKRNLLQQQAQV 103 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666777777766664
No 294
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=65.19 E-value=29 Score=23.51 Aligned_cols=39 Identities=10% Similarity=0.305 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 37 TEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 37 n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
....+.++..|+...+++---+..|+++++.|..+|..+
T Consensus 44 R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 44 REEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666667788888888888887654
No 295
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=65.16 E-value=34 Score=25.83 Aligned_cols=26 Identities=15% Similarity=0.473 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 45 KELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 45 ~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
..+..||+++.+-|..|..+++.++.
T Consensus 80 ~q~~~ek~~r~e~k~~l~~ql~qv~~ 105 (150)
T 4dci_A 80 QQVAGKRSELEEQKRNLLQQQAQVRE 105 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566899999999988888876653
No 296
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=64.82 E-value=10 Score=25.37 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 032644 45 KELKAEKNELRDEKQRLKADKE 66 (136)
Q Consensus 45 ~~L~~EKnELrdEk~~Lk~eke 66 (136)
++|..+..+|++|+..|+..+.
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 297
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=64.82 E-value=12 Score=26.55 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHhhHHH
Q 032644 25 QLRTEAQKLKQSTEDL 40 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L 40 (136)
+|.+|++.||.....+
T Consensus 3 ~l~~~~~~l~~~~~~~ 18 (182)
T 3kqg_A 3 TLNAQIPELKSDLEKA 18 (182)
T ss_dssp ----------CHHHHH
T ss_pred chhhhHHHHHHHHHHH
Confidence 4566666666655533
No 298
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=64.60 E-value=26 Score=29.53 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
.|.+.++.++++...|+++++.-+++--||..+-.+||-|+-.|..
T Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 209 KLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 4556666666666666666666666666666666666666654443
No 299
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=64.42 E-value=10 Score=22.62 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
++||-..+++|-.+|..|+.+...|+
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35566666666666665555554444
No 300
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=64.19 E-value=20 Score=27.43 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 42 EKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 42 ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
++++.|+.||..++++...-+.+...|..|..++
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888777777777777776653
No 301
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=64.11 E-value=9.4 Score=26.06 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
+|..+...+..++.-|.+=.++-.+-.--|-+.+..||.||-|||.
T Consensus 19 el~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 19 ELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp ----------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444466666677777777663
No 302
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=64.10 E-value=9.9 Score=30.09 Aligned_cols=29 Identities=10% Similarity=0.284 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 032644 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEK 43 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee 43 (136)
+++-++.-+.+|+++...|.++|+.|+.+
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555666666666666666666554
No 303
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=64.09 E-value=17 Score=25.67 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=16.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 29 EAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
+++.||++.+.|+++-+.|-.-...++.....|..
T Consensus 7 ~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lte 41 (106)
T 2aze_B 7 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSE 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555444444444444444444433
No 304
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=64.01 E-value=30 Score=31.41 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
|.+-|+|+..+..-..+++....-++.|++-.++.+..+..|++.+++++
T Consensus 358 lddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~ 407 (602)
T 1cii_A 358 LLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQL 407 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555555555555555555566666666666666666665544
No 305
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=63.72 E-value=8.7 Score=22.77 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032644 39 DLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 39 ~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
+|+++-+.|-.||.-|+..+.-|+.-++.|
T Consensus 4 slq~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 4 GVQAEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 466677777788888888887777766654
No 306
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=63.54 E-value=28 Score=22.66 Aligned_cols=32 Identities=9% Similarity=0.115 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNEL 54 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnEL 54 (136)
|+.+..+++.|..++..-+..+..+...-+.|
T Consensus 38 v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L 69 (118)
T 3uul_A 38 VKEQFATHETFMMELSAHQSSVGSVLQAGNQL 69 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333
No 307
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=63.44 E-value=40 Score=24.46 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032644 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
|.+.++|..+...|++....+..++.+|.+.
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~ 35 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDF 35 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544445555554444
No 308
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=63.27 E-value=38 Score=24.18 Aligned_cols=63 Identities=21% Similarity=0.384 Sum_probs=47.2
Q ss_pred hhhhHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 12 KATILSDVVRMMEQLRT-EAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 12 KAsIL~DAir~lkqLr~-e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|-.||++=+.-| ++-. -.++|++-...|-+.|..|..||=+|...-.+-+-||..|..++..+
T Consensus 26 KkkiLaER~kpL-~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 26 KKKILAERRKVL-AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 567887766444 3322 23567788888888888888888888888888888999999888876
No 309
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=63.04 E-value=50 Score=25.44 Aligned_cols=46 Identities=20% Similarity=0.455 Sum_probs=29.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 29 EAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|+++|...++.|+..+.+|..-|..|.++-...+.+.-.|+.++-+
T Consensus 90 E~~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemns 135 (170)
T 3l4q_C 90 EMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNS 135 (170)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667777777777777777777766666666665556555544
No 310
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=62.56 E-value=5.4 Score=24.69 Aligned_cols=23 Identities=13% Similarity=0.328 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKI 44 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~ 44 (136)
++.+|..+++.|+..+..|++.+
T Consensus 45 ~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777766666665543
No 311
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=62.42 E-value=50 Score=26.46 Aligned_cols=58 Identities=9% Similarity=0.160 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032644 12 KATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 12 KAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
-..|---...-++.++++...|..+.++.++|++++.+...+-|..-+.++..-+++-
T Consensus 162 de~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 162 DSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3445555555566777777777777777777777777766666666666665555443
No 312
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=62.40 E-value=3.2 Score=30.00 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032644 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
+..|||.|. +||....+-.-..+.+. ++.+|.+|+..|..++++|.
T Consensus 33 ~~~lK~~RR---~lKNR~yAq~CR~rk~~-~~~~LE~e~~~L~~e~e~L~ 78 (107)
T 3a5t_A 33 IIQLKQRRR---TLKNRGYAASCRVKRVT-QKEELEKQKAELQQEVEKLA 78 (107)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHHHHHHTTTSSTTTTTT
T ss_pred HHHHHHHHH---hhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 344444443 44443333333333322 44444444444444433333
No 313
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=62.37 E-value=24 Score=23.45 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHhHH---HHHHHHHHHHhc--cCCCCCCC
Q 032644 27 RTEAQKLKQSTEDLQEKIKELKAEKN----ELRDEKQRLKA---DKEKLEQQVKAM--SAPSGFLP 83 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKn----ELrdEk~~Lk~---eke~Le~qlk~~--~~~p~f~p 83 (136)
....+.|+.+...+.+....|..|++ .||+-...... +...+...++.+ +.-.||.+
T Consensus 8 KkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l~~~I~~ILYat~~~f~~ 73 (75)
T 3mtu_A 8 KKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPVLQRIVDILYATDEGFVI 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHHHHHHHHHHHCBTTBCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCcCCCC
Confidence 34455577777777777777777766 66664433322 222344445442 23456644
No 314
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=61.81 E-value=11 Score=21.09 Aligned_cols=12 Identities=58% Similarity=0.792 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 032644 46 ELKAEKNELRDE 57 (136)
Q Consensus 46 ~L~~EKnELrdE 57 (136)
+|+-|-..|.||
T Consensus 11 elkgevralkde 22 (27)
T 3v86_A 11 ELKGEVRALKDE 22 (27)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHH
Confidence 333333333333
No 315
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=61.34 E-value=46 Score=28.63 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=10.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHh
Q 032644 53 ELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 53 ELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+|+.....+++.++.|++++..
T Consensus 109 ~l~~~~~~~~~~i~~l~~~i~~ 130 (409)
T 1m1j_C 109 QLTDMHIMNSNKITQLKQKIAQ 130 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3333333444455555554444
No 316
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=61.06 E-value=42 Score=28.20 Aligned_cols=57 Identities=14% Similarity=0.271 Sum_probs=40.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032644 12 KATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 12 KAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
+.++|..|-.+..+++.=.+.|..-...+.++|+.--.+-|.|-++...|-.+|-+.
T Consensus 66 R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~ 122 (463)
T 2d4y_A 66 RQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRM 122 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888887777777777777777777777777777777766666666665443
No 317
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=60.72 E-value=25 Score=21.22 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 032644 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIK 45 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~ 45 (136)
.||..-=.+|..++..-.+++++|.++..
T Consensus 3 ~~~L~ENekLhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 3 YEALKENEKLHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33333333444443333333333333333
No 318
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=60.57 E-value=13 Score=24.86 Aligned_cols=36 Identities=31% Similarity=0.291 Sum_probs=20.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 35 QSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 35 ~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
+....=.+.|++|..+.++=.+|...|+.++.|.+.
T Consensus 18 ~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 18 KILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455666666666666666666666555443
No 319
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=60.53 E-value=37 Score=23.16 Aligned_cols=54 Identities=6% Similarity=0.262 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHH-HHHHHHhc
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKEL---KAEKNELRDEKQRLKADKEK-LEQQVKAM 75 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L---~~EKnELrdEk~~Lk~eke~-Le~qlk~~ 75 (136)
.|++....+.+..+-+..+.-|++.+ ...|+.+......-|++..+ |..+|+.+
T Consensus 35 ~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 35 TLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555555666666666 24566666666666677777 77777654
No 320
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=60.32 E-value=17 Score=31.61 Aligned_cols=56 Identities=16% Similarity=0.095 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
-|.-|+.||+-++.+..++.+|+.+|.+-..-+.--=.....++-+++.-|+|.|+
T Consensus 132 q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQ 187 (390)
T 1deq_A 132 QVQRINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQ 187 (390)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhccHHHHHHHHHH
Confidence 34456666666666666666666666333222222122233344444444444444
No 321
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=59.84 E-value=39 Score=27.86 Aligned_cols=49 Identities=14% Similarity=0.248 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHhHHHHHHHH
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQEKI------KELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~------~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
.+++.|+.++++|.++.++++..+ +..+..+++|.+...+++..+...+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 301 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGK 301 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888887544 2334555566666666655555543
No 322
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=59.06 E-value=45 Score=23.65 Aligned_cols=34 Identities=26% Similarity=0.307 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHH
Q 032644 16 LSDVVRMMEQLRTEAQKLKQSTEDLQ---EKIKELKA 49 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~---ee~~~L~~ 49 (136)
|.-|-..|..-+.++.+||++...+. +.+.-|++
T Consensus 11 L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~ 47 (94)
T 3jsv_C 11 LQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKA 47 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666677777777777776 44444443
No 323
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=58.88 E-value=44 Score=23.98 Aligned_cols=40 Identities=5% Similarity=0.160 Sum_probs=26.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 35 QSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 35 ~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+...-|++....|..+..+|+.-...|..-++.+++.++.
T Consensus 95 ~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 95 HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445677777888888888888888888888888776666
No 324
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=58.43 E-value=34 Score=22.02 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
+|+.-+.+++.....++..+..|+...+.|..
T Consensus 12 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~ 43 (98)
T 3gwk_C 12 ELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDE 43 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444555555555555555555555555443
No 325
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=58.42 E-value=33 Score=28.94 Aligned_cols=44 Identities=14% Similarity=0.417 Sum_probs=20.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
++++...++.|+..+.++...|..|.++...-+++.-.|+.++.
T Consensus 200 ~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 243 (373)
T 3hhm_B 200 IQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMN 243 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555555444444444334444433
No 326
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=58.36 E-value=15 Score=30.22 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|..+|..| +++-.|.-....|.++.++...+.++|.++...+..=+..||+|+-.
T Consensus 214 A~~lL~~l-~~l~gl~id~~~L~e~A~~~e~~i~~l~~~~~e~~~~V~~LE~~~D~ 268 (319)
T 2p90_A 214 TLKLLQSI-ADSADLNLPLLALERDAEKVHRQLMEQTEESSEIQRVVGALEQQYDS 268 (319)
T ss_dssp HHHHHHHH-HHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhh
Confidence 34444433 34445555667777777777777777777777777777777777766
No 327
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=58.13 E-value=23 Score=21.07 Aligned_cols=26 Identities=4% Similarity=0.156 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
++||-..+++|-.++..|+.+...|+
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45566666666555555555554443
No 328
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=58.06 E-value=8.5 Score=24.18 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhh
Q 032644 22 MMEQLRTEAQKLKQST 37 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n 37 (136)
+|..+|.|++++|.++
T Consensus 16 IL~E~RkElqK~K~EI 31 (45)
T 1use_A 16 LLEEVKKELQKVKEEI 31 (45)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556666666666654
No 329
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=58.03 E-value=2.1 Score=36.29 Aligned_cols=47 Identities=30% Similarity=0.542 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKI----KELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~----~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
.+++.+-++||+.-..|+.+. +.|..++.+|++.+..|+.|+...+.
T Consensus 344 ~~v~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 394 (418)
T 2qag_C 344 MKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEA 394 (418)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666555555544 33344444444444444444444433
No 330
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=57.77 E-value=48 Score=23.53 Aligned_cols=9 Identities=44% Similarity=0.634 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 032644 26 LRTEAQKLK 34 (136)
Q Consensus 26 Lr~e~~~Lk 34 (136)
|+.++.+++
T Consensus 28 lke~~~q~~ 36 (94)
T 3jsv_C 28 LKEEAEQHK 36 (94)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 331
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=57.76 E-value=33 Score=30.64 Aligned_cols=45 Identities=29% Similarity=0.327 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADK 65 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ek 65 (136)
+|..+||.++.-||.....--..|+-|+.-...+|.+.++|+.+|
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666554444666777777777777777777766
No 332
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=57.66 E-value=35 Score=24.37 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=31.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 32 KLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+|++-...|-+.|..|..||=+|...-.+-+-||..|..++..+
T Consensus 46 ~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 46 KLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 45555566666666677777777777777777888888888776
No 333
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=57.65 E-value=48 Score=23.53 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKA-----EKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~-----EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
-++..-|..|+..|++-..-|++|...|.. +..++-++|+.|-..++.++.+...+
T Consensus 7 ~~L~~~L~~~~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~ 67 (154)
T 3opc_A 7 AALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDAL 67 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777777666655 56677778888888888887776653
No 334
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.56 E-value=8.1 Score=33.14 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCC
Q 032644 45 KELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPS 79 (136)
Q Consensus 45 ~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p 79 (136)
++++.+.+++|++...|+.+.++.+.+++.+...|
T Consensus 68 ~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~ 102 (437)
T 4b4t_L 68 RRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIG 102 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45666677777777778888888888888876655
No 335
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=57.41 E-value=48 Score=23.47 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
.++|..|+.+|..++..|+.-....| -||..-.-|..|.++-..+
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~iqs~aK----~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEKMQNNSK----LLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444333333 2344444555555555444
No 336
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=57.32 E-value=46 Score=24.32 Aligned_cols=34 Identities=9% Similarity=0.308 Sum_probs=11.4
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 032644 14 TILSD-VVRMMEQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 14 sIL~D-Air~lkqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
+|..| .-..+.+.-.+++.++..+..|...+..|
T Consensus 28 ~~~~~~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l 62 (180)
T 1s94_A 28 AVQVDSGGGFMEEFFEQVEEIRAMIDKISDNVDAV 62 (180)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34344 33333444444444444444444443333
No 337
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=57.07 E-value=50 Score=23.49 Aligned_cols=38 Identities=32% Similarity=0.401 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032644 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKAD 64 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~e 64 (136)
..|+++|++.+..|+....+...--.||-.+++.|+.+
T Consensus 17 e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq~~ 54 (125)
T 1joc_A 17 EGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIK 54 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 33555555555555555555444444555555555543
No 338
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=57.00 E-value=27 Score=24.31 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=11.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Q 032644 32 KLKQSTEDLQEKIKELKAEKNELR 55 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnELr 55 (136)
+|+.++..|++++..|..+..+++
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444
No 339
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=56.86 E-value=71 Score=28.04 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q 032644 61 LKADKEKLEQQVK 73 (136)
Q Consensus 61 Lk~eke~Le~qlk 73 (136)
|+..|.+|+..+.
T Consensus 180 l~~ki~~l~~~~~ 192 (464)
T 1m1j_B 180 LHKKIQKLENAIA 192 (464)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 340
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=56.58 E-value=2.7 Score=37.20 Aligned_cols=13 Identities=38% Similarity=0.787 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh
Q 032644 62 KADKEKLEQQVKA 74 (136)
Q Consensus 62 k~eke~Le~qlk~ 74 (136)
..|+++|++++..
T Consensus 404 ~~e~~~l~~~~~~ 416 (575)
T 2i1j_A 404 AAERQKLEDEIRA 416 (575)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3344455554433
No 341
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=56.54 E-value=9.5 Score=25.48 Aligned_cols=20 Identities=15% Similarity=0.111 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHhhHH
Q 032644 20 VRMMEQLRTEAQKLKQSTED 39 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~ 39 (136)
.+-.++|+.|+.+|+.++.+
T Consensus 5 ~~~~~~l~~E~~~lk~E~~s 24 (65)
T 3sja_C 5 SKKYLAKVKERHELKEFNNS 24 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34455666666666655443
No 342
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=55.94 E-value=19 Score=31.99 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH------------------------------------HHHHHHHHhHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKN------------------------------------ELRDEKQRLKADKEK 67 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKn------------------------------------ELrdEk~~Lk~eke~ 67 (136)
+.|+.+++.|+++...+..+|..++..+. +|.++...|+.+...
T Consensus 44 r~~~~~~e~l~~~~N~~sk~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~ 123 (522)
T 3vbb_A 44 RRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCDAERIK 123 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCGGGCSSSSCCHHHHHTTCSSSHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHhhhhhhhhhhhhHHHHhhhhhHHHHHHHHHHHHHH
Confidence 45667777777777777777766544321 234555567777777
Q ss_pred HHHHHHhc
Q 032644 68 LEQQVKAM 75 (136)
Q Consensus 68 Le~qlk~~ 75 (136)
++.++..+
T Consensus 124 ~~~~~~~~ 131 (522)
T 3vbb_A 124 LEAERFEN 131 (522)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888763
No 343
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=55.82 E-value=16 Score=28.26 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=11.7
Q ss_pred HHHHHHHhHHHHHHHHHH
Q 032644 54 LRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 54 LrdEk~~Lk~eke~Le~q 71 (136)
++|...++.+|.+++...
T Consensus 58 ~~d~~lR~~Ae~eN~rkR 75 (197)
T 1dkg_A 58 ERDGILRVKAEMENLRRR 75 (197)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556777777777666543
No 344
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=55.36 E-value=52 Score=23.22 Aligned_cols=43 Identities=23% Similarity=0.333 Sum_probs=34.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
.|.|+..+.+..++..+|+.--..||.||..|----.+|=.|+
T Consensus 28 lqqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqi 70 (97)
T 1no4_A 28 LQQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQI 70 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHh
Confidence 5778888888888888888888888888888877777776665
No 345
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.15 E-value=12 Score=32.07 Aligned_cols=33 Identities=12% Similarity=0.279 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 38 EDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
..++.+++.+..+...|+.+...++.++++|+.
T Consensus 68 ~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~ 100 (437)
T 4b4t_L 68 RRYDDQLKQRRQNIRDLEKLYDKTENDIKALQS 100 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555555555555566666666666666653
No 346
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=54.59 E-value=0.22 Score=36.18 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 37 TEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 37 n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
...|+.++..|..|+..|..|+..|+.|++.+..++++
T Consensus 60 ~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~k~e~ 97 (107)
T 3a5t_A 60 KEELEKQKAELQQEVEKLASENASMKLELDALRSKYEA 97 (107)
T ss_dssp HHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444333
No 347
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=54.48 E-value=56 Score=23.37 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=19.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 33 LKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|++..+.|++++++|..-++.|.......+..+.+.++++..+
T Consensus 86 L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~ 128 (142)
T 3gp4_A 86 LKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDF 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444444444444444444444444444444444444444443
No 348
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=54.37 E-value=60 Score=23.64 Aligned_cols=55 Identities=18% Similarity=0.316 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH--------HHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKEL--------KAEKNELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L--------~~EKnELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
++.|+.|++..........+.+++- ..|-..-+++...+...+..|+.+|....+
T Consensus 12 ~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~v 74 (156)
T 2f23_A 12 YERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVI 74 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4566666666444444444444332 234556777888889999999999988543
No 349
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=54.34 E-value=59 Score=23.52 Aligned_cols=47 Identities=28% Similarity=0.381 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEK-------NELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EK-------nELrdEk~~Lk~eke~Le~q 71 (136)
+|-.|-=.|.+..+.++++.+-|.... .||.+|.-+|+.|-.+|-++
T Consensus 34 ELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 34 ELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777777776643 34444444444444444443
No 350
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=54.17 E-value=19 Score=21.38 Aligned_cols=24 Identities=4% Similarity=0.263 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
+||-..+++|=.+|..|+.+...|
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHH
Confidence 444444444444444444444333
No 351
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=54.14 E-value=63 Score=27.15 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 032644 43 KIKELKAEKNELRD 56 (136)
Q Consensus 43 e~~~L~~EKnELrd 56 (136)
+...+..+..|+..
T Consensus 208 ~l~~l~~ql~ei~~ 221 (517)
T 4ad8_A 208 QIDLLAFQVQEISE 221 (517)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 33333333333333
No 352
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=54.09 E-value=65 Score=24.71 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032644 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
..++.+++.....-+..|++|.....+|..+-..+-.+|..|.
T Consensus 39 ~~qi~en~~~iakNqadI~~L~~dI~dLd~~v~l~~RdIgsL~ 81 (157)
T 2qih_A 39 KAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNT 81 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhhcchh
Confidence 3445556555555556666666555555555444444443333
No 353
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=54.03 E-value=36 Score=21.01 Aligned_cols=32 Identities=16% Similarity=0.401 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
+|..++++.-.+++.-++.|.+|+....+|.+
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555543
No 354
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=53.66 E-value=64 Score=23.75 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHH-hhHHHHHHHHHHH--------HHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032644 21 RMMEQLRTEAQKLKQ-STEDLQEKIKELK--------AEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~-~n~~L~ee~~~L~--------~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+-++.|+.|++.|+. +.-.+.+.+++-. .|-..-+++...+...|..|+.+|....
T Consensus 9 ~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A~ 73 (158)
T 2p4v_A 9 EGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLK 73 (158)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 345677888888854 3444444443322 3333356777888899999999998854
No 355
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.03 E-value=59 Score=23.14 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHh
Q 032644 61 LKADKEKLEQQVKA 74 (136)
Q Consensus 61 Lk~eke~Le~qlk~ 74 (136)
-|...+||-.+++.
T Consensus 89 ~k~q~~KL~~dF~~ 102 (130)
T 2dnx_A 89 QRLQKERLMNDFSA 102 (130)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34467777776665
No 356
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=53.02 E-value=58 Score=24.32 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEK-------IKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee-------~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|++.|..|+.+-+.-...|++- +.+.+..-+|-+.--.++++-+.+|...++.
T Consensus 87 Yn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~s 146 (152)
T 4fla_A 87 YNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQS 146 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455666665544444444433 3444444455555555555666666555554
No 357
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=52.84 E-value=35 Score=29.12 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=12.3
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 032644 52 NELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 52 nELrdEk~~Lk~eke~Le~q 71 (136)
.++.+|...|+.++++||.+
T Consensus 97 ~~a~~e~~~l~~~l~~le~~ 116 (365)
T 1gqe_A 97 NEAVAELDALEEKLAQLEFR 116 (365)
T ss_dssp HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666653
No 358
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=52.61 E-value=24 Score=23.81 Aligned_cols=62 Identities=13% Similarity=0.195 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------------HHHHHHHHHhHHHHHHHHHHHHh
Q 032644 13 ATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEK-------------NELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 13 AsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EK-------------nELrdEk~~Lk~eke~Le~qlk~ 74 (136)
..-+.||+.||+.++..-+.=-+-+..+.+-.+..+.+. +|.-++-+.|=.+-..|=.++..
T Consensus 4 ~~~~~~A~~yv~kVK~rF~~~p~~Y~~FL~il~~yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~F~~ 78 (85)
T 1e91_A 4 SVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQ 78 (85)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHccccccccccccCcHHHHHHHHHHHHccCHHHHHHHHH
Confidence 355789999999999887775667777887777777664 45666666666666666666655
No 359
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=52.41 E-value=57 Score=22.77 Aligned_cols=31 Identities=23% Similarity=0.257 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 45 KELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 45 ~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
..+..+.+|..-....|+.+.-+++..|..+
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777766654
No 360
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=52.28 E-value=44 Score=21.41 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032644 36 STEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
+|.+|+.-...|...--.|..+...|+.+|.+||..
T Consensus 18 enaklenivarlendnanlekdianlekdianlerd 53 (56)
T 3he4_A 18 ENAKLENIVARLENDNANLEKDIANLEKDIANLERD 53 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444455555556555543
No 361
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=52.26 E-value=10 Score=25.50 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
+|...|-++||+..--++||..+-+
T Consensus 6 r~iLqERNELKa~vf~lqeEL~yY~ 30 (65)
T 1yhn_B 6 EQILQERNELKAKVFLLKEELAYFQ 30 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444443
No 362
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=51.66 E-value=41 Score=22.82 Aligned_cols=37 Identities=8% Similarity=0.190 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032644 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEK 51 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EK 51 (136)
-+.||+.||+.++..-+.=-+-+..+.+-.+..+.+.
T Consensus 9 ~~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~ 45 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQ 45 (89)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhcc
Confidence 4689999999999887665566666666666665543
No 363
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=51.06 E-value=50 Score=22.78 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 032644 51 KNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 51 KnELrdEk~~Lk~eke~Le~ql 72 (136)
|+.+......-|++..+|..+|
T Consensus 80 R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 80 RNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444455555555544
No 364
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=51.01 E-value=28 Score=25.07 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
.+|....++|+.+...|+..+..|
T Consensus 12 ~ql~~~~qql~~~~~~l~~~~~~L 35 (151)
T 2zdi_C 12 EKLAYEYQVLQAQAQILAQNLELL 35 (151)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444
No 365
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=51.00 E-value=59 Score=22.56 Aligned_cols=38 Identities=26% Similarity=0.524 Sum_probs=17.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032644 31 QKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
++|+.+...+++.++....+....++++..+++++++.
T Consensus 5 eel~~~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~~~ 42 (138)
T 4ayc_A 5 EELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEV 42 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34444444444444444444444445555555444443
No 366
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=50.23 E-value=11 Score=24.14 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=15.2
Q ss_pred HHHHHHhHHHHHHHHHHHHh
Q 032644 55 RDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 55 rdEk~~Lk~eke~Le~qlk~ 74 (136)
.+|..+|+.|||+|+.|-..
T Consensus 5 ~EEILRLErEIE~Lqrqke~ 24 (51)
T 2lw9_A 5 VEEILRLEKEIEDLQRMKEQ 24 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788889999998876443
No 367
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=50.16 E-value=53 Score=21.74 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHh
Q 032644 23 MEQLRTEAQKLKQSTEDLQE-------KIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~e-------e~~~L~~EKnELrdEk~~L 61 (136)
+..|..+...+.++...|+. +.+....-+++..+|...|
T Consensus 11 mqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~e~~~l 56 (75)
T 3mtu_A 11 MQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQENEGENDPV 56 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 33455555555555555554 4444444444444343333
No 368
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=50.10 E-value=56 Score=21.99 Aligned_cols=45 Identities=9% Similarity=0.321 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032644 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
++..=|+.+..+-+.|+.....|+..+.+=+.+.+-++.|...+-
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~ 48 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLL 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667888888888888888888888888888777777766543
No 369
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=50.02 E-value=58 Score=22.18 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHH--H-HhhHHHHHHHHHHHHHHHH-HHHHHHHh
Q 032644 16 LSDVVRMMEQLRTEAQKL--K-QSTEDLQEKIKELKAEKNE-LRDEKQRL 61 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~L--k-~~n~~L~ee~~~L~~EKnE-LrdEk~~L 61 (136)
|.+|-.+|.|+.-|++.+ - ..-..+..+++.-+.+.+. |+.+-..|
T Consensus 43 ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l 92 (97)
T 3onj_A 43 QDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777777777 2 2345566666666655555 54444433
No 370
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=49.73 E-value=41 Score=30.57 Aligned_cols=18 Identities=22% Similarity=0.243 Sum_probs=7.9
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 032644 53 ELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 53 ELrdEk~~Lk~eke~Le~ 70 (136)
-||.-...+..+|.|||.
T Consensus 135 vLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 135 LLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334333444444445543
No 371
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=49.63 E-value=29 Score=23.44 Aligned_cols=27 Identities=30% Similarity=0.351 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
-|..|..|-+.|-.....+++++..++
T Consensus 7 ~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 7 DIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777666666666666555
No 372
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=49.56 E-value=27 Score=24.78 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=12.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHh
Q 032644 52 NELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 52 nELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+..++...|+..+..||.|+..
T Consensus 92 ~~e~~~~~~L~~~i~~Le~el~~ 114 (117)
T 3kin_B 92 EKEKEKNKALKSVIQHLEVELNR 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666666554
No 373
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=49.17 E-value=44 Score=20.62 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=11.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032644 33 LKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
|+..-..|+....+|....+-|.-|++.|
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~mL 36 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQML 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33333344444444444444444444433
No 374
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=49.09 E-value=38 Score=25.10 Aligned_cols=24 Identities=21% Similarity=0.428 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
..|...+..|...++.|+.++..+
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~ 87 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAA 87 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 375
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=48.74 E-value=38 Score=28.13 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032644 43 KIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 43 e~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
.|+.|..+.++|+++.+.|+..+..+.
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~~q~ 55 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIKTQK 55 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666555555544433
No 376
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=48.38 E-value=41 Score=29.94 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=28.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 28 TEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
..+..|+.+...++++++.++.+.++|+...+.++.++.+.-.++
T Consensus 352 ~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 396 (695)
T 2j69_A 352 RRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQ 396 (695)
T ss_dssp HHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666667777777777777777777666666666554443
No 377
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=48.20 E-value=32 Score=21.10 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
++.+|.+..+.|.+.+.+|+.+...|.
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554444443
No 378
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=47.85 E-value=39 Score=23.84 Aligned_cols=65 Identities=17% Similarity=0.279 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------------HHHHHHHHHhHHHHHHHHHHHHhccCCCCC
Q 032644 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEK-------------NELRDEKQRLKADKEKLEQQVKAMSAPSGF 81 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EK-------------nELrdEk~~Lk~eke~Le~qlk~~~~~p~f 81 (136)
-+.||+.||+.++..-+.=-+-+..+.+-.+..+.+. .|.-++-+.|=..-..|=..+.. |
T Consensus 6 ~~~dA~~YvnkVK~rF~d~p~vY~~FL~IL~~yk~~~~d~~g~~~~~~s~~eV~~~V~~LF~~hpDLl~eFn~------F 79 (105)
T 2f05_A 6 EFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQ------F 79 (105)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHH------H
T ss_pred cHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccccccccccccCcHHHHHHHHHHHHccCHHHHHHHHH------H
Confidence 4679999999999988776677788888888877776 36667777777777777777766 7
Q ss_pred CCCC
Q 032644 82 LPHP 85 (136)
Q Consensus 82 ~ph~ 85 (136)
+|..
T Consensus 80 LP~~ 83 (105)
T 2f05_A 80 LPEA 83 (105)
T ss_dssp SCGG
T ss_pred CCCc
Confidence 7753
No 379
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=47.48 E-value=77 Score=24.60 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=27.0
Q ss_pred HHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032644 17 SDVVRMME-QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 17 ~DAir~lk-qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
+++||-|- .=-..+++|+.+|..|++++...|.+-..+++|
T Consensus 123 aE~ireli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 123 AEVIRELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333 234567788888888888887777666666665
No 380
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=47.46 E-value=1.1e+02 Score=24.52 Aligned_cols=53 Identities=11% Similarity=0.251 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
.+-+.|.....++|+.+..|+.+......|.|.++.-...-+.....+..|..
T Consensus 164 ~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 164 VVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35567778888888888888888887777777766666555555555544443
No 381
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=47.09 E-value=54 Score=21.42 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 032644 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
+|.+--+-|..|-.++.+.+.....|..+..++...-+||..=...++.++++
T Consensus 6 ~LveNgekI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~~ 58 (64)
T 3t97_C 6 TLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKE 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666677778888888888888888888888888777777665555554443
No 382
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=47.02 E-value=1.2e+02 Score=26.64 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032644 43 KIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 43 e~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
.++.|+...++|+...+.|+..+..+.
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~~~~ 195 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIATQT 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666665554433
No 383
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=46.97 E-value=44 Score=22.48 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 47 LKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 47 L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
|...+.+|+++...|+.-++.|+..+
T Consensus 79 l~~~~~~l~~~i~~l~~~~~~l~~~~ 104 (108)
T 2vz4_A 79 LRRQHELLSARIGKLQKMAAAVEQAM 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 384
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=46.61 E-value=43 Score=29.57 Aligned_cols=10 Identities=0% Similarity=0.152 Sum_probs=3.8
Q ss_pred HhHHHHHHHH
Q 032644 60 RLKADKEKLE 69 (136)
Q Consensus 60 ~Lk~eke~Le 69 (136)
..+.|...+.
T Consensus 448 ~i~~el~~i~ 457 (470)
T 3ilw_A 448 IVRDELAEIV 457 (470)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 385
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=46.56 E-value=51 Score=22.70 Aligned_cols=35 Identities=9% Similarity=0.330 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
++|.+=+.+++.++.+++.|+.+.+.++.=++...
T Consensus 12 ~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~ 46 (115)
T 3qfl_A 12 ELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIG 46 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788999999999999999999888777664
No 386
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=46.13 E-value=54 Score=20.71 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032644 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELR 55 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELr 55 (136)
|+.-+.++......|++.+..|+...+.|.
T Consensus 14 l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~ 43 (99)
T 3zbh_A 14 LRGVARQYNVESSNVTELIARLDQMSHTLQ 43 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 387
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=45.72 E-value=31 Score=23.82 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 51 KNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 51 KnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|+.+......-|++..+|..+++.+
T Consensus 69 R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 69 RGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455556666666666654
No 388
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=45.59 E-value=60 Score=22.02 Aligned_cols=12 Identities=33% Similarity=0.315 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 032644 47 LKAEKNELRDEK 58 (136)
Q Consensus 47 L~~EKnELrdEk 58 (136)
++.+.+.|.++.
T Consensus 48 ~~~~l~~l~~~i 59 (127)
T 1ez3_A 48 TKEELEELMSDI 59 (127)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444433
No 389
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=45.34 E-value=56 Score=22.90 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHH------HHHHHhhH-HHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHh
Q 032644 14 TILSDVVRMMEQLRTEA------QKLKQSTE-DLQEKIKELKAEKNELRD--EKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~------~~Lk~~n~-~L~ee~~~L~~EKnELrd--Ek~~Lk~eke~Le~qlk~ 74 (136)
.-+++-|+.++.++.++ .+|+...+ .|+.++..|..|-++|-. -+.+|-.|-..+...|+.
T Consensus 13 ~t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~~fQ~ 82 (97)
T 1hs7_A 13 ETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKTKYQS 82 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHH
Confidence 34455555555444443 34444444 444444444444443333 344555555555544443
No 390
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=45.11 E-value=81 Score=22.45 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 40 LQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 40 L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|++.+++|-.-...|.+|+=.|+....+-.-+|..+
T Consensus 47 L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL 82 (107)
T 1ytz_T 47 LRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTL 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHH
Confidence 444444444444444444444444444444444443
No 391
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=44.97 E-value=50 Score=20.89 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 51 KNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 51 KnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
-++++..-..+..-.+.+..+|+.
T Consensus 58 ~~~~~~~~~~~~~~L~~i~~~L~~ 81 (99)
T 3zbh_A 58 YQELRPSFEKMAVLLNEVGQQLHN 81 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 392
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=44.90 E-value=1.5e+02 Score=25.58 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 032644 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEK 58 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk 58 (136)
-.++++=+....|+.++...+....+.|+.|...-+-.+...
T Consensus 80 ~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i 121 (411)
T 3ghg_C 80 DAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKI 121 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344555555666677776666666666666665444443333
No 393
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=44.79 E-value=67 Score=23.83 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHH
Q 032644 26 LRTEAQKLKQSTEDLQEKIKELKA-----EKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~-----EKnELrdEk~~Lk~eke~Le~q 71 (136)
|..|+++|.+....++-....+.. -..++.+|+..|..+|++|..+
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777666666655322211 1234555556666666665543
No 394
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=44.78 E-value=31 Score=22.24 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 50 EKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 50 EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.-++++..-..+..-.+.+..+|+.
T Consensus 56 ~~~~~~~~~~~~~~~L~~i~~~L~~ 80 (98)
T 3gwk_C 56 QFNELSPKITEFAQLLEDINQQLLK 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 395
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=44.77 E-value=1.1e+02 Score=25.20 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
..|..|+.++++.+.....+.++++..+
T Consensus 123 ~~L~~L~~~i~~~q~~~~~~~~~L~~F~ 150 (346)
T 2nrj_A 123 EGITDLRGEIQQNQKYAQQLIEELTKLR 150 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444444333
No 396
>2oie_A RS21-C6; helix, hydrolase; 2.20A {Mus musculus} SCOP: a.204.1.2 PDB: 2oig_A*
Probab=44.42 E-value=70 Score=21.55 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 032644 40 LQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 40 L~ee~~~L~~EKnELrdEk~ 59 (136)
...-.-.|..|-.||.+.-.
T Consensus 38 ~~~~~~~L~eE~gEl~e~~~ 57 (111)
T 2oie_A 38 PRNLLLALVGEVGELAELFQ 57 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555443
No 397
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=44.30 E-value=16 Score=20.65 Aligned_cols=18 Identities=33% Similarity=0.521 Sum_probs=9.1
Q ss_pred HHHhhHHHHHHHHHHHHH
Q 032644 33 LKQSTEDLQEKIKELKAE 50 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~E 50 (136)
|+=+|..|+.+|..|++.
T Consensus 5 lefendaleqkiaalkqk 22 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQK 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 444555555555555443
No 398
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=44.26 E-value=22 Score=23.80 Aligned_cols=20 Identities=20% Similarity=0.373 Sum_probs=18.6
Q ss_pred CCCchhhhHHHHHHHHHHHH
Q 032644 8 PKTDKATILSDVVRMMEQLR 27 (136)
Q Consensus 8 ~K~DKAsIL~DAir~lkqLr 27 (136)
.|..|..||--||.|+..|+
T Consensus 47 kKLSKiEtLr~Ai~YI~~Lq 66 (68)
T 2lfh_A 47 TQLSQVEILQRVIDYILDLQ 66 (68)
T ss_dssp CCCCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHH
Confidence 48999999999999999996
No 399
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=44.19 E-value=5.6 Score=30.73 Aligned_cols=24 Identities=17% Similarity=0.425 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 50 EKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 50 EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
|.+++.+|...|+.++++|+.+++
T Consensus 257 ~~~~~~~~~~~l~~~~~~l~~~l~ 280 (285)
T 3rvy_A 257 HEDNINNEIIKLREEIVELKELIK 280 (285)
T ss_dssp ------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444555555555555444
No 400
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=43.97 E-value=97 Score=27.95 Aligned_cols=30 Identities=20% Similarity=0.250 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAE 50 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~E 50 (136)
.-|.+||..++.+..++..|++...+.--+
T Consensus 19 ~~v~~l~~~~q~~e~~~k~Le~~Qe~F~~~ 48 (585)
T 1y1u_A 19 QRFEELRLITQDTENELKKLQQTQEYFIIQ 48 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 557777777777777777776655544333
No 401
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=43.93 E-value=69 Score=21.30 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHHHHHHHhHHHHHHHHH
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQEKIKEL------KAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L------~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
|=|.+|-.+|.+|.+++..|++.+..= -.+-++|..+...++.+++.+..
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~e 77 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFE 77 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888888888888888876321 13344555555555555555443
No 402
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=43.34 E-value=76 Score=21.66 Aligned_cols=41 Identities=20% Similarity=0.484 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCCCC
Q 032644 37 TEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSGFLPHP 85 (136)
Q Consensus 37 n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p~f~ph~ 85 (136)
...++..|-.++.|-+-+... +..+|..++++.. .+++|..
T Consensus 10 Vk~~eT~iaa~~~ev~t~~~~-------l~~~e~~vqaL~~-ag~ip~A 50 (74)
T 1avy_A 10 IKAIETDIASVRQEVNTAKGN-------ISSLQGDVQALQE-AGYIPEA 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-TCCCCCC
T ss_pred hcccccchhhhheeeccccch-------hhhhhhhhHHHHh-cCCCCCC
Confidence 344444555555555444444 4444444444322 4566653
No 403
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=43.03 E-value=59 Score=26.28 Aligned_cols=49 Identities=20% Similarity=0.300 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|-+.++.+++.+..|++.+.++++.-.+...+...++.-...|++-++.
T Consensus 4 lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr 52 (233)
T 2yko_A 4 LRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKR 52 (233)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455556666666666666555555444444444444444555554444
No 404
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=42.77 E-value=84 Score=26.38 Aligned_cols=10 Identities=20% Similarity=0.498 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 032644 64 DKEKLEQQVK 73 (136)
Q Consensus 64 eke~Le~qlk 73 (136)
|.++|+.+++
T Consensus 228 E~e~L~~~~~ 237 (517)
T 4ad8_A 228 EEEGLNTELS 237 (517)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 3333333333
No 405
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=42.52 E-value=82 Score=22.42 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 032644 38 EDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
..|++.+++|-.-...|.+|+=.|+....+-.-+|..++.
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~ 84 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRN 84 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHH
Confidence 4566666666666666666666666666555555555543
No 406
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=42.46 E-value=10 Score=22.35 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032644 36 STEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
++..+..+|+.|..++.++.++-..|.
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~ 31 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLK 31 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555544443
No 407
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=42.46 E-value=80 Score=21.61 Aligned_cols=40 Identities=30% Similarity=0.427 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
-++.||+.+..+ +.+.|++=...|..=.+|-|+|-...+.
T Consensus 13 niR~LRA~arel--~le~Lee~leKl~~VveERree~~~~~~ 52 (86)
T 3nr7_A 13 NIRTLRAQARES--TLETLEEMLEKLEVVVNERREEESAAAA 52 (86)
T ss_dssp CHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666655 5555555555555444444444333333
No 408
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=42.45 E-value=48 Score=24.59 Aligned_cols=34 Identities=6% Similarity=0.274 Sum_probs=18.3
Q ss_pred hHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 15 ILSDVVRMME----QLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 15 IL~DAir~lk----qLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
.|-++.+.|+ +|-.++.+|+.+-.++..+|+...
T Consensus 11 ~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~ 48 (179)
T 2gd5_A 11 LVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAA 48 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555443 355555566665556666555443
No 409
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=42.38 E-value=50 Score=30.64 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=21.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 29 EAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
|.++|.+|...|++++.+|+.=.+.-..-+..++.|...+..++
T Consensus 403 e~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i~~ky 446 (716)
T 1zvu_A 403 EEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAY 446 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Confidence 45555555555555555555433333333444555555555544
No 410
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=42.19 E-value=1e+02 Score=22.81 Aligned_cols=32 Identities=9% Similarity=0.281 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 44 IKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|..|..||=+|...-..-.-||..|..++..+
T Consensus 74 I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 74 VDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHcchHHHHHHHHHHHH
Confidence 33334444444444444445566666655554
No 411
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=42.15 E-value=50 Score=23.92 Aligned_cols=34 Identities=35% Similarity=0.382 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 41 QEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 41 ~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.++++.|..|-.+...|....-.+.++|-.+++.
T Consensus 91 ~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666666666666666666666666655
No 412
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=42.07 E-value=67 Score=26.77 Aligned_cols=17 Identities=41% Similarity=0.628 Sum_probs=8.7
Q ss_pred HHHHHHHHhHHHHHHHH
Q 032644 53 ELRDEKQRLKADKEKLE 69 (136)
Q Consensus 53 ELrdEk~~Lk~eke~Le 69 (136)
+|+++...|+.+++.++
T Consensus 424 ~l~~~~~~~~~~~~~~~ 440 (468)
T 3pxg_A 424 SLRDTEQRLREQVEDTK 440 (468)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555444
No 413
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=42.03 E-value=55 Score=22.06 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEK 58 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk 58 (136)
-|.+||.+|..+-.++-.|..+.-.+..+--+++.+.
T Consensus 13 ~L~~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~ 49 (90)
T 2vkl_A 13 EIDTLREEIDRLDAEILALVKRRAEVSKAIGKARMAS 49 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4778888888888777777777666666655555443
No 414
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=41.91 E-value=51 Score=22.70 Aligned_cols=17 Identities=6% Similarity=0.175 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032644 17 SDVVRMMEQLRTEAQKL 33 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~L 33 (136)
.+|-.+|.|+.-|++.+
T Consensus 59 dEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 59 QEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 34444444444444443
No 415
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=41.71 E-value=95 Score=23.32 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 38 EDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
.-|++..+.|..+..+|+.-...|+.-++.++...
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (278)
T 1r8e_A 82 AFYTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555555666555555555555554443
No 416
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=41.69 E-value=15 Score=26.82 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIK 45 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~ 45 (136)
+.+|-+|+++|+-||..|...++
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666655544
No 417
>1ybz_A Chorismate mutase; conserved hypothetical protein, hyperthermophIle, structural genomics, PSI, protein structu initiative; 1.82A {Pyrococcus furiosus} SCOP: a.130.1.1
Probab=41.66 E-value=69 Score=21.74 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
|.+||.++..+-.+.-.|..+.-.+..+--+++.+
T Consensus 19 L~~lR~~ID~ID~~Ll~LL~~R~~~~~~Ig~~K~~ 53 (91)
T 1ybz_A 19 LKLLRKEIDKIDNQIISLLKKRLEIAQAIGKIKKE 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888887777777766666665555543
No 418
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=41.29 E-value=27 Score=29.13 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 36 STEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
++..|+..+-.+..+...|++....+++.|.+|++++..
T Consensus 5 ~~~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~ 43 (319)
T 1fzc_C 5 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQ 43 (319)
T ss_dssp -----CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555544433
No 419
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=41.23 E-value=51 Score=24.61 Aligned_cols=34 Identities=35% Similarity=0.374 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 41 QEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 41 ~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.++++.|..|-.+...|....-.+.++|-.+++.
T Consensus 91 ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~ 124 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDS 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777777777766
No 420
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=41.04 E-value=85 Score=21.52 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=22.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032644 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKAD 64 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~e 64 (136)
.|.|+..+.+.+.+|..|..+.--.++++..+..+
T Consensus 32 ~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~ee 66 (77)
T 3mtu_E 32 LQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQM 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 57788888888888877775554444444444444
No 421
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=40.77 E-value=80 Score=21.14 Aligned_cols=20 Identities=10% Similarity=0.142 Sum_probs=7.9
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 032644 54 LRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 54 LrdEk~~Lk~eke~Le~qlk 73 (136)
|..+...+++++++.-++++
T Consensus 40 lE~el~~~r~e~~~ql~EYq 59 (86)
T 1x8y_A 40 KEREMAEMRARMQQQLDEYQ 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333333
No 422
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=40.54 E-value=1.1e+02 Score=22.78 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+..|+|=+.+|+.++.++... +.++|..++.. ...+...|+..++.|+..|+.
T Consensus 18 ~~~alr~ia~l~r~~~~i~~~---~n~eI~~ik~~---~~~~~~~l~~~i~~l~~~l~~ 70 (171)
T 2p2u_A 18 AEGALAEIATIDRKVGEIEAQ---MNEAIDAAKAR---ASQKSAPLLARRKELEDGVAT 70 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777776653 34445444432 345666788888888888777
No 423
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=40.23 E-value=1.1e+02 Score=24.09 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
..|..++.+|+++++.|.+....+.+|-.-+|.
T Consensus 62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~Rk 94 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEHRYLRLYADFENFRR 94 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666555555544443
No 424
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=40.19 E-value=52 Score=21.43 Aligned_cols=19 Identities=21% Similarity=0.389 Sum_probs=10.5
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 032644 53 ELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 53 ELrdEk~~Lk~eke~Le~q 71 (136)
.|+++...|+.++++|+.|
T Consensus 61 ~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 61 YMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4555555555555555543
No 425
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=39.39 E-value=72 Score=20.22 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=9.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHH
Q 032644 30 AQKLKQSTEDLQEKIKELKAEKNEL 54 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnEL 54 (136)
+.++......|++.+..|+.+.+.|
T Consensus 14 a~~~~~~~~~i~~~l~~l~~~v~~l 38 (94)
T 3fav_B 14 ASAIQGNVTSIHSLLDEGKQSLTKL 38 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 426
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=39.23 E-value=80 Score=20.69 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEK 58 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk 58 (136)
|.+||.+|..+-.+.-.|.++.-.+..+--+++.+.
T Consensus 5 L~~lR~~ID~iD~~l~~Ll~~R~~~~~~i~~~K~~~ 40 (90)
T 2d8d_A 5 IQALRKEVDRVNREILRLLSERGRLVQEIGRLQTEL 40 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 667777777777777777766666665555555444
No 427
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=38.87 E-value=65 Score=28.69 Aligned_cols=16 Identities=38% Similarity=0.410 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 032644 39 DLQEKIKELKAEKNEL 54 (136)
Q Consensus 39 ~L~ee~~~L~~EKnEL 54 (136)
+|++|.++|..|..+|
T Consensus 458 kl~~E~~~l~~ei~~l 473 (514)
T 2inr_A 458 ALEGEHKELEALIKQL 473 (514)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 428
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=38.79 E-value=1.3e+02 Score=23.44 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=7.4
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 032644 56 DEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 56 dEk~~Lk~eke~Le~qlk 73 (136)
.+...++++++.++.+++
T Consensus 129 a~~~~~~~~l~~~~~~l~ 146 (369)
T 4dk0_A 129 AEMDVVQENIKQAEIEVN 146 (369)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 429
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=38.74 E-value=68 Score=19.78 Aligned_cols=36 Identities=36% Similarity=0.502 Sum_probs=16.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 31 QKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
.+||.-+..|++...+|+ .-|..||--+..||-+|-
T Consensus 6 kelknyiqeleernaelk-------nlkehlkfakaelefela 41 (46)
T 3he4_B 6 KELKNYIQELEERNAELK-------NLKEHLKFAKAELEFELA 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHH-------hHHHHHHHHHHHHHHHHH
Confidence 344444444444443333 444445555555555543
No 430
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=38.68 E-value=43 Score=24.47 Aligned_cols=22 Identities=9% Similarity=0.394 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQE 42 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~e 42 (136)
..|+|.+.|+..+|+.+..|-|
T Consensus 73 ~~L~QIQ~ei~s~rd~hkR~~E 94 (115)
T 1ezj_A 73 QLLKQIQESVESFRDIYKRFSE 94 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555443
No 431
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=38.66 E-value=89 Score=22.58 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=23.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032644 35 QSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 35 ~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
+++..|++|.+.+..|+-+...|+..|...++.+
T Consensus 92 ~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 125 (132)
T 1ykh_B 92 RKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSM 125 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777666665544
No 432
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=38.61 E-value=80 Score=21.43 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEK 58 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk 58 (136)
|.+||.+|..+-.+.-.|.++.-.+..+--+++.+.
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~R~~~~~~v~~~K~~~ 42 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAERRELAVEVGKAKLLS 42 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 677888888888888877777766666655555443
No 433
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=38.38 E-value=76 Score=24.96 Aligned_cols=24 Identities=8% Similarity=0.345 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
++|-.++.+|..+-.++..+|+..
T Consensus 24 R~LdR~~~kle~eEkk~~~~IKka 47 (218)
T 3frt_A 24 RVVDRQIRDIQREEEKVKRSVKDA 47 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555443
No 434
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=38.00 E-value=1.4e+02 Score=24.11 Aligned_cols=50 Identities=22% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELK------AEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~------~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
|.+--..++.++..-.+|..+|..|+ ...+.|+.|..+.+++..--|.||
T Consensus 99 IR~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL 154 (234)
T 3plt_A 99 IRNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQL 154 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHH
No 435
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=37.87 E-value=68 Score=28.53 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 45 KELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 45 ~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
..++.+..+++.+...|+....+++..+..
T Consensus 362 ~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~ 391 (695)
T 2j69_A 362 NELKKRIDSVEPEFNKLTGIRDEFQKEIIN 391 (695)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 436
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=37.32 E-value=58 Score=27.04 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 50 EKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 50 EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
....|+.+...|+..|.+||..+..
T Consensus 29 ~I~~Lq~~le~L~~KI~~LE~~v~~ 53 (323)
T 1lwu_B 29 SLRSMKSVLEHLRAKMQRMEEAIKT 53 (323)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777776654
No 437
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=37.32 E-value=1.1e+02 Score=22.83 Aligned_cols=45 Identities=9% Similarity=0.250 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032644 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
.+-...+.++++++.+|+.++.++.+++..-..+++-|..=-+..
T Consensus 5 ~~i~~ei~e~~~~i~~l~~~Ik~il~~~~st~~~~~~lEsiAAKI 49 (129)
T 3f6n_A 5 NQIQKEVSEILSDQKSMKADIKAILELLGSQNPIKESLETVAAKI 49 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHH
Confidence 344445566666666666666666666555444444444433333
No 438
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=37.00 E-value=92 Score=23.16 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=26.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032644 34 KQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 34 k~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
-+++..|++|.+.+..|+-+...|+..|-..++.+=.
T Consensus 91 ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~ 127 (151)
T 1yke_B 91 LRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIE 127 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888888888777777777666555433
No 439
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=36.63 E-value=50 Score=23.38 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=7.3
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 032644 52 NELRDEKQRLKADKEKLE 69 (136)
Q Consensus 52 nELrdEk~~Lk~eke~Le 69 (136)
+||.+|...|..+|..||
T Consensus 50 ~eL~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 50 KHLEEEIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 440
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=36.42 E-value=1.1e+02 Score=22.59 Aligned_cols=10 Identities=20% Similarity=0.252 Sum_probs=4.9
Q ss_pred hHHHHHHHHH
Q 032644 15 ILSDVVRMME 24 (136)
Q Consensus 15 IL~DAir~lk 24 (136)
+|.=|...|+
T Consensus 23 ll~kA~e~l~ 32 (133)
T 1j1d_C 23 LLQIAKQELE 32 (133)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 441
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix, PSI, protein structure INI midwest center for structural genomics; 1.60A {Staphylococcus aureus subsp} SCOP: a.24.27.1
Probab=36.16 E-value=93 Score=24.40 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
+++|..++..+-.++..++++..+.+.+-|+..-||+..
T Consensus 157 ~~~l~eki~~vN~~y~~~~~~FN~yTk~yN~~~kek~~~ 195 (199)
T 2ap3_A 157 QQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKVQKEKQDV 195 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 568889999999999999999999999999999888753
No 442
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=36.02 E-value=38 Score=19.43 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=5.9
Q ss_pred HHHHHHhhHHHHHHH
Q 032644 30 AQKLKQSTEDLQEKI 44 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~ 44 (136)
...|+++|..|..+.
T Consensus 8 lasleaenkqlkakv 22 (31)
T 1p9i_A 8 LASLEAENKQLKAKV 22 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444433333
No 443
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=36.00 E-value=1.5e+02 Score=22.83 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
|..|+.++.-.+.-+.-|..+...|..|--++.++...++.+.++.-
T Consensus 19 L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~ 65 (217)
T 3aon_A 19 LTRLKKQLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEKET 65 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666677777777777777777777777776666643
No 444
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=35.98 E-value=98 Score=20.80 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
-|..|..|-+.|-.....+++++..++.|.-+....+..|+
T Consensus 5 ~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~~le 45 (71)
T 1uix_A 5 DVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKAQFE 45 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777766655444434444443
No 445
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=35.97 E-value=78 Score=19.66 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 032644 19 VVRMMEQLRTEAQKLKQST 37 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n 37 (136)
|=|-|+.|..+|.+|+++.
T Consensus 10 AERsV~KLek~ID~LEdeL 28 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDEL 28 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 446
>1x59_A Histidyl-tRNA synthetase; hisrs, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.87 E-value=65 Score=20.99 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 032644 38 EDLQEKIKELKAEKNEL 54 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnEL 54 (136)
..+.+++..|...|++|
T Consensus 36 ~~I~eev~kl~~~ka~l 52 (73)
T 1x59_A 36 ELIEEEVAKLLKLKAQL 52 (73)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 33444444444333333
No 447
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=35.80 E-value=91 Score=20.36 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
+|-.+++.|+.++..-+.||.-|.
T Consensus 22 ~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 22 QLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777777776554
No 448
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=35.63 E-value=80 Score=29.50 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 032644 37 TEDLQEKIKELKAEKNELR 55 (136)
Q Consensus 37 n~~L~ee~~~L~~EKnELr 55 (136)
..+|++|.++|..|..+|+
T Consensus 698 ~~kl~~E~~~l~~~i~~l~ 716 (767)
T 2xkj_E 698 EMEIRHEQDELSAKAAIIR 716 (767)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 449
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=35.52 E-value=1.1e+02 Score=21.23 Aligned_cols=50 Identities=16% Similarity=0.215 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKELK----AEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~----~EKnELrdEk~~Lk~eke~Le~q 71 (136)
++.-|..++..+++-..-|++|...|. .+..++-++|+.|-..++.++.+
T Consensus 8 L~~~L~~~~~~l~~L~~lL~~E~~~L~~~d~~~L~~i~~~k~~ll~~L~~~~~~ 61 (157)
T 2fup_A 8 LLDLFAEDIGHANQLLQLVDEEFQALERRELPVLQQLLGAKQPLMQQLERNGRA 61 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666777765554 25566667777777777777766
No 450
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=35.26 E-value=70 Score=26.53 Aligned_cols=46 Identities=24% Similarity=0.218 Sum_probs=33.2
Q ss_pred HHHHHHh--hHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHhc
Q 032644 30 AQKLKQS--TEDLQEKIKELKAEKNELRDE-KQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 30 ~~~Lk~~--n~~L~ee~~~L~~EKnELrdE-k~~Lk~eke~Le~qlk~~ 75 (136)
+-.|.-. ...|.++.++.+.+.++|.++ ...+..=...||+|+-+.
T Consensus 227 ~~gl~vp~~~~~L~e~Ae~~e~~i~el~~~~~~E~~~~V~~LE~~yD~~ 275 (325)
T 3e35_A 227 ATGLVLPGIAHSLRTDAHRTQTEIDRQIQEGDEELIALVQGLEHQYDAA 275 (325)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HhCCCCCcchHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh
Confidence 3344544 667777777777777777777 777777788888888774
No 451
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=35.25 E-value=1.3e+02 Score=21.79 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQEKIKE 46 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~ 46 (136)
.-++|++-++.++...+.|++.+.-
T Consensus 68 ~~~EL~~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 68 TTNELRNGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555443
No 452
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=35.04 E-value=66 Score=20.23 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=6.5
Q ss_pred HHhHHHHHHHHHHHHh
Q 032644 59 QRLKADKEKLEQQVKA 74 (136)
Q Consensus 59 ~~Lk~eke~Le~qlk~ 74 (136)
..+....+.+..+|+.
T Consensus 66 ~~~~~~L~~i~~~L~~ 81 (93)
T 4ioe_A 66 QQYIPILEGISTDLKR 81 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 453
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=34.91 E-value=1.4e+02 Score=24.46 Aligned_cols=44 Identities=18% Similarity=0.454 Sum_probs=31.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 29 EAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
|++.|.+.++.|+.....|-.-+..+.+|..--|.|+-++|.++
T Consensus 91 e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~ier~l 134 (302)
T 2y3a_B 91 EMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKRM 134 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhHHhhh
Confidence 66777777777877777777777777777777777777775543
No 454
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=34.86 E-value=1.1e+02 Score=21.05 Aligned_cols=20 Identities=5% Similarity=0.121 Sum_probs=8.0
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 032644 53 ELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 53 ELrdEk~~Lk~eke~Le~ql 72 (136)
.|..+.+.++.+.++.-.++
T Consensus 48 ~lE~eL~~~r~e~~~ql~EY 67 (95)
T 3mov_A 48 DKEREMAEIRDQMQQQLNDY 67 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444433333
No 455
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=34.79 E-value=69 Score=20.15 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELR 55 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELr 55 (136)
+|+.-+.+++.....+++.+..|+...+.|.
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~ 43 (93)
T 4ioe_A 13 ELERIAGNFKNAAGEAQSQINRLEGDINSLE 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555543
No 456
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.78 E-value=87 Score=28.14 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 032644 40 LQEKIKELKAEKNELR 55 (136)
Q Consensus 40 L~ee~~~L~~EKnELr 55 (136)
|+.++..++.+..+|+
T Consensus 435 ~~~~~~~~~~~~~~~~ 450 (854)
T 1qvr_A 435 IEAEIAKLTEEIAKLR 450 (854)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 457
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=34.62 E-value=1.2e+02 Score=21.36 Aligned_cols=60 Identities=25% Similarity=0.271 Sum_probs=36.7
Q ss_pred CCCCCchhhhHHHHHHHHHHHHHHHHHHHHh--hHHH-HHHHHHHHHHHHHHHHHHHHhHHHH
Q 032644 6 RPPKTDKATILSDVVRMMEQLRTEAQKLKQS--TEDL-QEKIKELKAEKNELRDEKQRLKADK 65 (136)
Q Consensus 6 rp~K~DKAsIL~DAir~lkqLr~e~~~Lk~~--n~~L-~ee~~~L~~EKnELrdEk~~Lk~ek 65 (136)
||.......=|.+|-+.-.|+-.||.+-=.. |..| +..|++|..|.|.|--||.+=+..|
T Consensus 13 RP~~~~~v~~l~~AekWR~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rEK~~WE~rI 75 (92)
T 1x4t_A 13 RPFLASECTELPKAEKWRRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRI 75 (92)
T ss_dssp CCSCTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhcCCHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444577888899988888887777654332 2233 2347777766666655555444333
No 458
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=34.62 E-value=72 Score=21.18 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 50 EKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 50 EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
-..||+.+...=..+|..|+.++..+
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555556666555553
No 459
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=34.54 E-value=19 Score=29.99 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQ-----EKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~-----ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
+.|++++.+++.....+.... +.++.|....++|+.+.+.|+..+..+
T Consensus 4 ~~~~~~~~qle~~~~~ike~~~~~~~~~I~~Lq~~le~l~~KIq~Le~~v~~~ 56 (328)
T 1fzc_B 4 NVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLESDVSAQ 56 (328)
T ss_dssp --------------CTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655544332222 235556666666666555555555443
No 460
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=34.48 E-value=91 Score=19.95 Aligned_cols=24 Identities=4% Similarity=0.023 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Q 032644 24 EQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
+.+..+.+.|..++..-+..+..+
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~~ 62 (119)
T 3uun_A 39 KDQFHTHEGYMMDLTAHQGRVGNI 62 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 333334444444444443333333
No 461
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=34.46 E-value=92 Score=20.02 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--------------HHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKEL--------------KAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L--------------~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
-.-+.-.+.|..++..-+.....+.+.-+.| +...++|++.+..|..........|
T Consensus 39 ~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L 108 (118)
T 3uul_A 39 KEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRL 108 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667777777777776666655444 3334445555555555444444444
No 462
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=34.36 E-value=76 Score=21.17 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 42 EKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 42 ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+|.+++-.|+|||+..-..|+.|..--+.++
T Consensus 3 ~Elr~iLqERNELKa~vf~lqeEL~yY~~e~ 33 (65)
T 1yhn_B 3 EEFEQILQERNELKAKVFLLKEELAYFQREL 33 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3566777888888777777766665544443
No 463
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=34.29 E-value=2e+02 Score=23.73 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=13.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHhccC
Q 032644 54 LRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 54 LrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
||=.-..|.++++-|++-|..+..
T Consensus 371 ~~~~~~~~~~q~~~~~~~~~~~~~ 394 (406)
T 4dyl_A 371 ALCSQAKLQAQQELLQTKLEHLGP 394 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHhHHHHHHHHHHHHHHHHHhcCC
Confidence 333344556666666666666543
No 464
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=34.18 E-value=1.2e+02 Score=21.33 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=8.9
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 032644 53 ELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 53 ELrdEk~~Lk~eke~Le~q 71 (136)
.-.+|..+||.|.|..-.|
T Consensus 72 ~YEeEI~rLr~eLe~r~~q 90 (92)
T 3vp9_A 72 AYEEEIKHLKLGLEQRDHQ 90 (92)
T ss_dssp HHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 3345666666666655443
No 465
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=34.15 E-value=82 Score=21.65 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=6.6
Q ss_pred HhHHHHHHHHHHH
Q 032644 60 RLKADKEKLEQQV 72 (136)
Q Consensus 60 ~Lk~eke~Le~ql 72 (136)
.|+.+++.|+.++
T Consensus 79 ~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 79 NIKQQLDALKLRF 91 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 466
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=33.86 E-value=62 Score=22.74 Aligned_cols=6 Identities=17% Similarity=0.312 Sum_probs=3.0
Q ss_pred CCCCCC
Q 032644 78 PSGFLP 83 (136)
Q Consensus 78 ~p~f~p 83 (136)
|+||..
T Consensus 50 p~gw~~ 55 (182)
T 3kqg_A 50 SQGWKY 55 (182)
T ss_dssp TTTCEE
T ss_pred CCCCEE
Confidence 555443
No 467
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=33.80 E-value=88 Score=19.58 Aligned_cols=30 Identities=17% Similarity=0.457 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032644 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELR 55 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELr 55 (136)
|+.-+.+++.....|++.+..|...-+.|.
T Consensus 11 l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~ 40 (97)
T 2vs0_A 11 IRAKSQSYGQGSDQIRQILSDLTRAQGEIA 40 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444444443
No 468
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=33.30 E-value=1.5e+02 Score=22.24 Aligned_cols=52 Identities=25% Similarity=0.399 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH--H-----HHHHhHHHHHHHHHHHHh
Q 032644 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELR--D-----EKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELr--d-----Ek~~Lk~eke~Le~qlk~ 74 (136)
||.|...-.+--..-..+++.|+.|+....|.. - .-..|..++++|+..|..
T Consensus 58 lKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~ 116 (155)
T 2efr_A 58 LKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYA 116 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444555555555554443321 1 223666666666665544
No 469
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=33.25 E-value=0.63 Score=35.89 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 032644 40 LQEKIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 40 L~ee~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
|++++..|+.|..||+|...++.+|.++
T Consensus 24 l~~~~~~l~~e~~e~~d~~lR~~Ae~eN 51 (177)
T 3a6m_A 24 LEERLKAAEEELKGLKDKYLRLLADFDN 51 (177)
T ss_dssp TTTSTTGGGGTSSSHHHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455555554444433
No 470
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=33.09 E-value=70 Score=22.57 Aligned_cols=46 Identities=15% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------------HhHHHHHHHHHHHHhcc
Q 032644 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQ------------RLKADKEKLEQQVKAMS 76 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~------------~Lk~eke~Le~qlk~~~ 76 (136)
+.+| -.+...-.+.+.|+.|.-+|+.|.. .|...+++|..+|+.++
T Consensus 12 i~~l-~~~s~~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~ 69 (93)
T 3sjb_C 12 ISKF-APGNELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLK 69 (93)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-ccCcHhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
No 471
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=33.00 E-value=1.6e+02 Score=22.95 Aligned_cols=36 Identities=11% Similarity=0.323 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 40 LQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 40 L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|-+.|..|..||=+|...-..-.-||..|..++..+
T Consensus 70 Lh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DL 105 (180)
T 1j1e_C 70 LHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHH
Confidence 333344444444444444444455666666666554
No 472
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=32.99 E-value=1.4e+02 Score=21.79 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032644 20 VRMMEQLRTEAQKLKQ-STEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~-~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+.=|++|-.|.+.|.. +.+...++-........+| .++..++.+|+.....+..+.
T Consensus 8 ~s~l~~LEaeyq~L~~kE~qrynqeka~AE~A~~~L-~~~~~m~~~i~ek~~~i~~~~ 64 (119)
T 2avr_X 8 VGELQALDAEYQNLANQEEARFNEERAQADAARQAL-AQNEQVYNELSQRAQRLQAEA 64 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 3447777788887765 5555555554454445555 345556667777766666643
No 473
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=32.96 E-value=84 Score=20.61 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032644 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAE 50 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~E 50 (136)
+.||+.||+.++..-+.=.+-+..+.+-.+..+.+
T Consensus 4 ~~dA~~yl~~VK~~F~~~p~~Y~~FL~im~~~k~~ 38 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGSDPATYNGFLEIMKEFKSQ 38 (77)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHc
Confidence 57999999999988776556667777666666543
No 474
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=32.71 E-value=1.5e+02 Score=24.12 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=6.3
Q ss_pred HHHHhHHHHHHHHHHH
Q 032644 57 EKQRLKADKEKLEQQV 72 (136)
Q Consensus 57 Ek~~Lk~eke~Le~ql 72 (136)
..+.|+.+-..||+.|
T Consensus 199 RLA~lEqdEl~LE~eL 214 (242)
T 3uux_B 199 KIANIEQNQLLLEDNL 214 (242)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHH
Confidence 3333334434444443
No 475
>3fcn_A AN alpha-helical protein of unknown function (PFA; DUF29 family protein, structural genomics; HET: MSE; 1.45A {Rhodospirillum rubrum atcc 11170}
Probab=32.55 E-value=1.5e+02 Score=22.45 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHh
Q 032644 38 EDLQEKIKELKA-EKNELRDEKQRL 61 (136)
Q Consensus 38 ~~L~ee~~~L~~-EKnELrdEk~~L 61 (136)
+.|-|||.+|.. ||++|+.--..|
T Consensus 41 enLiEEIE~mGrsekr~l~S~L~~L 65 (164)
T 3fcn_A 41 EHIAEEIEDMGRSELREATSLVRQI 65 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 677888887754 677777665544
No 476
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=32.54 E-value=9.4 Score=29.47 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH
Q 032644 43 KIKELKAEKNELRDEKQRLKADKE 66 (136)
Q Consensus 43 e~~~L~~EKnELrdEk~~Lk~eke 66 (136)
+.+++..|.++||++...|+.+++
T Consensus 257 ~~~~~~~~~~~l~~~~~~l~~~l~ 280 (285)
T 3rvy_A 257 HEDNINNEIIKLREEIVELKELIK 280 (285)
T ss_dssp ------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444454444444433
No 477
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=32.53 E-value=1.5e+02 Score=23.08 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032644 41 QEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 41 ~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.+....+.+.+.++.+...++.+.+.++.++..
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344555666677777777777777777777665
No 478
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=32.50 E-value=9.4 Score=27.35 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQEKIKE 46 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~ 46 (136)
|-|.||.++.+.++.||+.|.+-.+.
T Consensus 50 rQv~qLt~~lQ~~~~Ene~Lke~qKt 75 (95)
T 3n7n_E 50 RQIAQLNKQLQLSFQENEKLLSVQKN 75 (95)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888888887765543
No 479
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=32.45 E-value=95 Score=25.84 Aligned_cols=39 Identities=23% Similarity=0.493 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHhc
Q 032644 37 TEDLQEKIKELKAEKNELR-----DEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 37 n~~L~ee~~~L~~EKnELr-----dEk~~Lk~eke~Le~qlk~~ 75 (136)
...|++++..|..|++..- ++-+.|+.++++|+.++..+
T Consensus 396 i~~l~~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~ 439 (468)
T 3pxg_A 396 LKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDT 439 (468)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544322 34456777777777777664
No 480
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=32.43 E-value=1.2e+02 Score=20.76 Aligned_cols=15 Identities=27% Similarity=0.435 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHhc
Q 032644 61 LKADKEKLEQQVKAM 75 (136)
Q Consensus 61 Lk~eke~Le~qlk~~ 75 (136)
=|.-...++.||+.|
T Consensus 73 Rk~~v~~l~~~i~~l 87 (95)
T 2c5k_T 73 REAQVKNIKQQLDAL 87 (95)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555543
No 481
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=32.32 E-value=97 Score=27.65 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=20.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032644 29 EAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
|.++|.+|...|.++|.+|+.=.+.=..-+..++.|...+..+
T Consensus 440 e~~ki~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~ 482 (500)
T 3lpx_A 440 EHDKILSEYKALLDLIAELMHILATPARLMEVICEELVAIRDE 482 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4555555666665555555543332223333444444444433
No 482
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=32.29 E-value=1.2e+02 Score=22.31 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
++..|||..|.-||-....=-..+.-|+
T Consensus 22 qvsedLrrrIe~LkrKV~~Qvq~i~~Lq 49 (119)
T 1lwu_A 22 EVLRELERRIIHLQRRINMQLQQLTLLQ 49 (119)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888765544333343333
No 483
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=32.29 E-value=1.2e+02 Score=23.74 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q 032644 22 MMEQLRTEAQKLKQSTEDLQE 42 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~e 42 (136)
-+..||.+++.|+.++..|-+
T Consensus 73 Q~~~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 73 QVRLLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554444433
No 484
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.20 E-value=87 Score=20.59 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 032644 36 STEDLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~ 59 (136)
+.+.|.+++.+|+.|.-.||=.+.
T Consensus 10 s~~EL~~~L~elk~ELf~LR~q~a 33 (72)
T 3j21_W 10 SIEEIDAKIRELRLQLAKERGLLT 33 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665544
No 485
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=32.14 E-value=1.4e+02 Score=21.49 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhHHHHH--------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032644 25 QLRTEAQKLKQSTEDLQE--------KIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~e--------e~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+.++.+++++.-...... .+.++..-++||+.....++.+++.|+.=+..+.
T Consensus 35 EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 35 EVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556665555555331 1346777888888888888888888888777653
No 486
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=31.83 E-value=69 Score=28.40 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=9.0
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 032644 29 EAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~ 48 (136)
++++|.++...|++++.+|+
T Consensus 431 e~~kl~~E~~~l~~~i~~l~ 450 (496)
T 2nov_A 431 DVVVLQEEEAELREKIAMLA 450 (496)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 487
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=31.63 E-value=24 Score=24.31 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q 032644 28 TEAQKLKQSTEDLQEKIKELKAEKN 52 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKn 52 (136)
++++.|..++..|...+..|..|++
T Consensus 1 ~ei~~L~~ei~eLk~~ve~lEkERD 25 (82)
T 3tq7_B 1 AQILELNQQLVDLKLTVDGLEKERD 25 (82)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHH
No 488
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=31.59 E-value=1.3e+02 Score=20.96 Aligned_cols=58 Identities=10% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
++-.-|.+||.+|..+-.++-.|.++.-.+..+--+++.+...---+-+|-++.+..+
T Consensus 9 ~~~~~L~~lR~~ID~ID~~il~LL~~R~~~~~~I~~~K~~~~~~i~dp~RE~~vl~~~ 66 (114)
T 3rmi_A 9 KILSELAYLRQSIDNFDITLIHILAERFRCTQAIGRLKARYNLPAVDPLREQYQIKRL 66 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHH
No 489
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=31.37 E-value=1.1e+02 Score=19.89 Aligned_cols=52 Identities=6% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH------------HhHHHHHHHHHHHHhcc
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQ------------RLKADKEKLEQQVKAMS 76 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~------------~Lk~eke~Le~qlk~~~ 76 (136)
+||.-+.++......++..+..|+.+.+.|..-+. .....-.++++-|..++
T Consensus 4 el~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~Aa~af~~~~~~w~~~a~~l~~~L~~i~ 67 (94)
T 4i0x_A 4 EVGALSKFAASLADQMRAGSNSLDRDVQSLFGVWKGSAADAYRSGWDEMQDGATKVWNALTDIA 67 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=31.31 E-value=84 Score=18.57 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032644 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
+.+++.|.+..+..-++.+.|..+-..|..+...|
T Consensus 5 Ke~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~l 39 (39)
T 1gk7_A 5 KVELQELNDRFANYIDKVRFLEQQNKILLAELEQL 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 491
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=31.28 E-value=10 Score=32.08 Aligned_cols=57 Identities=25% Similarity=0.383 Sum_probs=0.0
Q ss_pred HHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCC
Q 032644 23 MEQLRTEA-QKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPS 79 (136)
Q Consensus 23 lkqLr~e~-~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p 79 (136)
+++...++ .+.++.+..|+++.++|+..+++|.+|+..+..++..++++......++
T Consensus 353 ~~~~e~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (418)
T 2qag_C 353 LKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEK 410 (418)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccc
No 492
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=31.04 E-value=1.1e+02 Score=20.06 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHHHHHhcc
Q 032644 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE--------------KQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE--------------k~~Lk~eke~Le~qlk~~~ 76 (136)
.|+.-+.++......|++.+..|+...+.|+.. .......-.+|+.-|..++
T Consensus 15 ~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~ 80 (103)
T 4i0x_B 15 HIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQME 80 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 493
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=30.98 E-value=88 Score=20.45 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHH-hhHHHHHHHHHHHHHHHHHHHHHH
Q 032644 30 AQKLKQ-STEDLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 30 ~~~Lk~-~n~~L~ee~~~L~~EKnELrdEk~ 59 (136)
+.+|++ +.+.|.+++.+|+.|.-.||=.+.
T Consensus 6 ~~elr~~s~~EL~~~l~elk~ELf~LR~q~a 36 (71)
T 1vq8_V 6 VQEIRDMTPAEREAELDDLKTELLNARAVQA 36 (71)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
No 494
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=30.98 E-value=97 Score=21.21 Aligned_cols=60 Identities=17% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHhccCCCC
Q 032644 21 RMMEQLRTEAQKLKQSTEDLQEKIKELK-AEKNELRDEKQRLKADKEKLEQQVKAMSAPSG 80 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~-~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p~ 80 (136)
..|.+....+++..+-+..+.-|.+.+- ..|+.+......-|++..+|..+++.+....+
T Consensus 38 ~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~~~~~~ 98 (102)
T 1vcs_A 38 QMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRSRIASG 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHHHTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 495
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=30.88 E-value=1.1e+02 Score=20.03 Aligned_cols=37 Identities=22% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032644 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
+-.|-+|+-|++.|+.++..+..-..+-..-+.+|+.
T Consensus 6 VDtVYalkDev~eLk~e~k~~k~~le~eqraRk~LE~ 42 (61)
T 3l4f_A 6 VDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEK 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=30.45 E-value=2.2e+02 Score=23.14 Aligned_cols=58 Identities=19% Similarity=0.239 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032644 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
||.|=-.-+++++.++..-+..+..-++.+..|+...-.-..+...|+.++.-|+..+
T Consensus 78 iL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~v 135 (242)
T 3c9i_A 78 ELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRV 135 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccc
No 497
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=30.41 E-value=1.5e+02 Score=21.18 Aligned_cols=58 Identities=12% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH------HHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032644 18 DVVRMMEQLRT------EAQKLKQSTE-DLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 18 DAir~lkqLr~------e~~~Lk~~n~-~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+.++.++.||. ++.++-.... ...+....|...+.+|+++...|+.-++.|+.-+..+
T Consensus 49 ~~l~~I~~lr~~G~sl~~I~~~l~~~~~~~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~ 113 (146)
T 3hh0_A 49 YVLQQIQSFKHLGFSLGEIQNIILQRDIETEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKF 113 (146)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 498
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=30.39 E-value=1.2e+02 Score=23.65 Aligned_cols=45 Identities=29% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHHHH-hhHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHh
Q 032644 30 AQKLKQ-STEDLQEKIKELKAEKNELRDEKQ-----------RLKADKEKLEQQVKA 74 (136)
Q Consensus 30 ~~~Lk~-~n~~L~ee~~~L~~EKnELrdEk~-----------~Lk~eke~Le~qlk~ 74 (136)
+.+|++ +.+.|++++.+|+.|.-.||=.+. ..+.+|-|+..-+..
T Consensus 67 a~ELR~lS~eEL~ekL~eLKkELFnLRfQkATGQLeNpsrIR~VRRdIARIkTVLrE 123 (173)
T 3bbo_Z 67 LKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKRE 123 (173)
T ss_dssp HHHHHHSCHHHHHHHHHHHTTHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
No 499
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=30.15 E-value=91 Score=23.07 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032644 38 EDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+.|++-.+.|+....+|.-+...|+.+..+++.+++
T Consensus 10 e~lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ik 45 (179)
T 2gd5_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVK 45 (179)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=30.13 E-value=1e+02 Score=19.27 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032644 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
|.+.-..|..|.++++++|.+.+....+.++|-.=|--|.-|.+.-+.
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRk 49 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRK 49 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Done!