Your job contains 1 sequence.
>032647
MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKA
VQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG
IEAEYHHKNSRVSFGY
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 032647
(136 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2178183 - symbol:THO1 "AT5G09860" species:3702... 623 7.1e-61 1
MGI|MGI:1919668 - symbol:Thoc1 "THO complex 1" species:10... 183 3.7e-13 1
UNIPROTKB|D4ABL0 - symbol:Thoc1 "THO complex subunit 1" s... 183 3.7e-13 1
UNIPROTKB|F1MJV3 - symbol:THOC1 "Uncharacterized protein"... 182 4.7e-13 1
UNIPROTKB|E2RNV0 - symbol:THOC1 "Uncharacterized protein"... 181 6.0e-13 1
UNIPROTKB|F1NMW7 - symbol:THOC1 "Uncharacterized protein"... 178 9.3e-13 1
UNIPROTKB|Q96FV9 - symbol:THOC1 "THO complex subunit 1" s... 179 9.9e-13 1
ZFIN|ZDB-GENE-030826-9 - symbol:thoc1 "THO complex 1" spe... 177 1.6e-12 1
UNIPROTKB|I3LE05 - symbol:THOC1 "Uncharacterized protein"... 174 3.4e-12 1
WB|WBGene00020172 - symbol:thoc-1 species:6239 "Caenorhab... 156 3.0e-10 1
FB|FBgn0037382 - symbol:Hpr1 "Hpr1" species:7227 "Drosoph... 148 2.3e-09 1
DICTYBASE|DDB_G0275717 - symbol:thoc1 "putative THO1 prot... 141 1.4e-08 1
POMBASE|SPCP25A2.03 - symbol:SPCP25A2.03 "THO complex sub... 122 1.5e-06 1
>TAIR|locus:2178183 [details] [associations]
symbol:THO1 "AT5G09860" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IMP] [GO:0031047 "gene silencing by RNA" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006406 "mRNA export from
nucleus" evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] GO:GO:0005634 EMBL:CP002688 GO:GO:0050832
GO:GO:0006406 GO:GO:0010267 InterPro:IPR021861 Pfam:PF11957
KO:K12878 EMBL:AF424566 EMBL:AF428323 IPI:IPI00528228
RefSeq:NP_568219.1 UniGene:At.27041 PRIDE:Q93VM9
EnsemblPlants:AT5G09860.1 GeneID:830846 KEGG:ath:AT5G09860
TAIR:At5g09860 InParanoid:Q93VM9 OMA:DMDPSAG PhylomeDB:Q93VM9
ProtClustDB:CLSN2689570 Genevestigator:Q93VM9 Uniprot:Q93VM9
Length = 599
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 108/132 (81%), Positives = 121/132 (91%)
Query: 1 MKEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKA 60
MKEE+KSCE+RVKKLLE+TPPKGK+FL ++EHILEREKNWVWWKRDGCPPFEKQ ++KK+
Sbjct: 325 MKEELKSCEDRVKKLLEITPPKGKEFLRAVEHILEREKNWVWWKRDGCPPFEKQPIDKKS 384
Query: 61 VQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
G KKRR RWRLGNKELSQLW+WADQNPNALTD QRVRTP I +YWKPLA+DMDPSAG
Sbjct: 385 PNAGQKKRRQRWRLGNKELSQLWRWADQNPNALTDSQRVRTPDIADYWKPLAEDMDPSAG 444
Query: 121 IEAEYHHKNSRV 132
IE EYHHKN+RV
Sbjct: 445 IEDEYHHKNNRV 456
>MGI|MGI:1919668 [details] [associations]
symbol:Thoc1 "THO complex 1" species:10090 "Mus musculus"
[GO:0000346 "transcription export complex" evidence=ISO]
[GO:0000347 "THO complex" evidence=ISO] [GO:0000445 "THO complex
part of transcription export complex" evidence=ISO] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0006810 "transport" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO;RCA] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=RCA] [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017 SMART:SM00005
MGI:MGI:1919668 GO:GO:0005737 GO:GO:0006915 GO:GO:0007165
GO:GO:0008380 GO:GO:0003677 GO:GO:0016607 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 Gene3D:1.10.533.10 InterPro:IPR011029
SUPFAM:SSF47986 GO:GO:0016363 GO:GO:0046784 GO:GO:0032784
GO:GO:0000445 InterPro:IPR021861 Pfam:PF11957 CTD:9984
eggNOG:NOG275387 HOGENOM:HOG000008123 HOVERGEN:HBG060294 KO:K12878
OMA:ILMGNEE OrthoDB:EOG4HX50P EMBL:AK031785 EMBL:AK032200
EMBL:AK042867 EMBL:BC024951 IPI:IPI00153778 RefSeq:NP_705780.1
UniGene:Mm.219648 ProteinModelPortal:Q8R3N6 SMR:Q8R3N6
STRING:Q8R3N6 PhosphoSite:Q8R3N6 PaxDb:Q8R3N6 PRIDE:Q8R3N6
Ensembl:ENSMUST00000025137 GeneID:225160 KEGG:mmu:225160
UCSC:uc008eal.1 GeneTree:ENSGT00390000016232 InParanoid:Q8R3N6
NextBio:377554 Bgee:Q8R3N6 CleanEx:MM_THOC1 Genevestigator:Q8R3N6
GermOnline:ENSMUSG00000024287 Uniprot:Q8R3N6
Length = 657
Score = 183 (69.5 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 42/136 (30%), Positives = 68/136 (50%)
Query: 12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQS---------MEKKAVQ 62
V +LL PP G+ F +EHIL E+NW WK +GCP F K+ + K+A
Sbjct: 360 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERASDTKPTRVVRKRAAP 419
Query: 63 DGPKKRRPRWRL--GNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
+ + P ++ GN+EL++LW N A R P + E+++ + DP
Sbjct: 420 EDFLGKGPNKKILIGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENM 479
Query: 121 IEAEYHHKNSRVSFGY 136
+E+EY N+ ++G+
Sbjct: 480 VESEYKAVNNS-NYGW 494
>UNIPROTKB|D4ABL0 [details] [associations]
symbol:Thoc1 "THO complex subunit 1" species:10116 "Rattus
norvegicus" [GO:0007165 "signal transduction" evidence=IEA]
InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017 SMART:SM00005
RGD:1308657 GO:GO:0007165 Gene3D:1.10.533.10 InterPro:IPR011029
SUPFAM:SSF47986 InterPro:IPR021861 Pfam:PF11957 OrthoDB:EOG4HX50P
IPI:IPI00560890 Ensembl:ENSRNOT00000021087 ArrayExpress:D4ABL0
Uniprot:D4ABL0
Length = 657
Score = 183 (69.5 bits), Expect = 3.7e-13, P = 3.7e-13
Identities = 42/136 (30%), Positives = 68/136 (50%)
Query: 12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQS---------MEKKAVQ 62
V +LL PP G+ F +EHIL E+NW WK +GCP F K+ + K+A
Sbjct: 360 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERASDTKPTRVVRKRAAP 419
Query: 63 DGPKKRRPRWRL--GNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
+ + P ++ GN+EL++LW N A R P + E+++ + DP
Sbjct: 420 EDFLGKGPNKKILIGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENM 479
Query: 121 IEAEYHHKNSRVSFGY 136
+E+EY N+ ++G+
Sbjct: 480 VESEYKAVNNS-NYGW 494
>UNIPROTKB|F1MJV3 [details] [associations]
symbol:THOC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000445 "THO complex part of transcription export complex"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017 SMART:SM00005
GO:GO:0005737 GO:GO:0006915 GO:GO:0007165 Gene3D:1.10.533.10
InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0046784 GO:GO:0032784
GO:GO:0000445 InterPro:IPR021861 Pfam:PF11957 OMA:ILMGNEE
GeneTree:ENSGT00390000016232 EMBL:DAAA02056653 IPI:IPI00699918
Ensembl:ENSBTAT00000025584 Uniprot:F1MJV3
Length = 660
Score = 182 (69.1 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 42/136 (30%), Positives = 68/136 (50%)
Query: 12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQ---------SMEKKAVQ 62
V +LL PP G+ F +EHIL E+NW WK +GCP F K+ ++ K+A
Sbjct: 363 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDSKPTRAVRKRAAP 422
Query: 63 DGPKKRRPRWRL--GNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
+ + P ++ GN EL++LW N A R P + E+++ + DP
Sbjct: 423 EDFLGKGPSKKILMGNDELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENM 482
Query: 121 IEAEYHHKNSRVSFGY 136
+E+EY N+ ++G+
Sbjct: 483 VESEYKAVNNS-NYGW 497
>UNIPROTKB|E2RNV0 [details] [associations]
symbol:THOC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046784 "intronless viral mRNA export from
host nucleus" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000445 "THO complex part of transcription export
complex" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017
SMART:SM00005 GO:GO:0005737 GO:GO:0006915 GO:GO:0007165
Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0046784
GO:GO:0032784 GO:GO:0000445 InterPro:IPR021861 Pfam:PF11957
CTD:9984 KO:K12878 OMA:ILMGNEE GeneTree:ENSGT00390000016232
EMBL:AAEX03005467 RefSeq:XP_547651.2 Ensembl:ENSCAFT00000029114
GeneID:490529 KEGG:cfa:490529 Uniprot:E2RNV0
Length = 657
Score = 181 (68.8 bits), Expect = 6.0e-13, P = 6.0e-13
Identities = 42/136 (30%), Positives = 67/136 (49%)
Query: 12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQ-SMEKKAVQDGPKKRRP 70
V +LL PP G+ F +EHIL E+NW WK +GCP F K+ + + K + K+ P
Sbjct: 360 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRVARKRTAP 419
Query: 71 ----------RWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
+ +GN+EL++LW N A R P + E+++ + DP
Sbjct: 420 EDFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENM 479
Query: 121 IEAEYHHKNSRVSFGY 136
+E EY N+ ++G+
Sbjct: 480 VENEYKAVNNS-NYGW 494
>UNIPROTKB|F1NMW7 [details] [associations]
symbol:THOC1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0007165 "signal transduction" evidence=IEA] [GO:0000445
"THO complex part of transcription export complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0046784 "intronless
viral mRNA export from host nucleus" evidence=IEA]
InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017 SMART:SM00005
GO:GO:0005737 GO:GO:0006915 GO:GO:0007165 GO:GO:0006406
Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0032784
GO:GO:0000445 InterPro:IPR021861 Pfam:PF11957 OMA:ILMGNEE
GeneTree:ENSGT00390000016232 EMBL:AADN02021331 EMBL:AADN02077728
IPI:IPI00585456 Ensembl:ENSGALT00000024055 Uniprot:F1NMW7
Length = 547
Score = 178 (67.7 bits), Expect = 9.3e-13, P = 9.3e-13
Identities = 41/136 (30%), Positives = 67/136 (49%)
Query: 12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSM-EKKAVQDGPKKRRP 70
V +LL PP G+ F +EHIL E+NW WK +GCP F K+ + K ++ K+ P
Sbjct: 249 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERPPDSKPMRPARKRPAP 308
Query: 71 ----------RWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
+ +GN+EL++LW N A R P + E+++ + DP
Sbjct: 309 EDFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSESREYMPTLEEFFEEAIEQADPENM 368
Query: 121 IEAEYHHKNSRVSFGY 136
+E +Y N+ ++G+
Sbjct: 369 VENKYKAVNNS-NYGW 383
>UNIPROTKB|Q96FV9 [details] [associations]
symbol:THOC1 "THO complex subunit 1" species:9606 "Homo
sapiens" [GO:0007165 "signal transduction" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0000346 "transcription export complex" evidence=IDA]
[GO:0000347 "THO complex" evidence=IDA] [GO:0000445 "THO complex
part of transcription export complex" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006915 "apoptotic process" evidence=IDA] [GO:0006406 "mRNA
export from nucleus" evidence=IDA] [GO:0046784 "intronless viral
mRNA export from host nucleus" evidence=IDA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017
SMART:SM00005 GO:GO:0005737 GO:GO:0006915 GO:GO:0007165
GO:GO:0008380 GO:GO:0003677 GO:GO:0016607 GO:GO:0006397
GO:GO:0006351 GO:GO:0003723 GO:GO:0006396 EMBL:CH471113
Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0016363
GO:GO:0046784 GO:GO:0032784 GO:GO:0000445 InterPro:IPR021861
Pfam:PF11957 EMBL:L36529 EMBL:AY573302 EMBL:AY573303 EMBL:AK314755
EMBL:AP000845 EMBL:BC010381 IPI:IPI00305374 IPI:IPI00646620
IPI:IPI00944519 PIR:A53545 RefSeq:NP_005122.2 UniGene:Hs.712543
PDB:1WXP PDBsum:1WXP ProteinModelPortal:Q96FV9 SMR:Q96FV9
IntAct:Q96FV9 MINT:MINT-4536762 STRING:Q96FV9 PhosphoSite:Q96FV9
DMDM:37999906 PaxDb:Q96FV9 PRIDE:Q96FV9 DNASU:9984
Ensembl:ENST00000261600 GeneID:9984 KEGG:hsa:9984 UCSC:uc002kkj.4
UCSC:uc002kkl.2 CTD:9984 GeneCards:GC18M000204 HGNC:HGNC:19070
HPA:HPA019096 HPA:HPA019687 MIM:606930 neXtProt:NX_Q96FV9
PharmGKB:PA134887435 eggNOG:NOG275387 HOGENOM:HOG000008123
HOVERGEN:HBG060294 InParanoid:Q96FV9 KO:K12878 OMA:ILMGNEE
OrthoDB:EOG4HX50P ChiTaRS:THOC1 EvolutionaryTrace:Q96FV9
GenomeRNAi:9984 NextBio:37696 Bgee:Q96FV9 CleanEx:HS_THOC1
Genevestigator:Q96FV9 GermOnline:ENSG00000079134 Uniprot:Q96FV9
Length = 657
Score = 179 (68.1 bits), Expect = 9.9e-13, P = 9.9e-13
Identities = 42/136 (30%), Positives = 67/136 (49%)
Query: 12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQ-SMEKKAVQDGPKKRRP 70
V +LL PP G+ F +EHIL E+NW WK +GCP F K+ + + K + K+ P
Sbjct: 360 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRIIRKRTAP 419
Query: 71 ----------RWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
+ +GN+EL++LW N A R P + E+++ + DP
Sbjct: 420 EDFLGKGPTKKILMGNEELTRLWNLCPDNMEACKSETREHMPTLEEFFEEAIEQADPENM 479
Query: 121 IEAEYHHKNSRVSFGY 136
+E EY N+ ++G+
Sbjct: 480 VENEYKAVNNS-NYGW 494
>ZFIN|ZDB-GENE-030826-9 [details] [associations]
symbol:thoc1 "THO complex 1" species:7955 "Danio
rerio" [GO:0007165 "signal transduction" evidence=IEA]
InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017 SMART:SM00005
ZFIN:ZDB-GENE-030826-9 GO:GO:0007165 Gene3D:1.10.533.10
InterPro:IPR011029 SUPFAM:SSF47986 InterPro:IPR021861 Pfam:PF11957
CTD:9984 HOGENOM:HOG000008123 HOVERGEN:HBG060294 KO:K12878
EMBL:BC054938 IPI:IPI00491037 RefSeq:NP_958481.1 UniGene:Dr.75966
ProteinModelPortal:Q7SYB2 SMR:Q7SYB2 PRIDE:Q7SYB2 GeneID:373077
KEGG:dre:373077 InParanoid:Q7SYB2 NextBio:20813350
ArrayExpress:Q7SYB2 Bgee:Q7SYB2 Uniprot:Q7SYB2
Length = 655
Score = 177 (67.4 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 40/125 (32%), Positives = 63/125 (50%)
Query: 12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQS-MEKKAVQDGPKKRRP 70
V +LL+ PP G F +EHIL E+NW WK +GCP F K+ E K ++ K++ P
Sbjct: 361 VYQLLKEIPPDGDKFGSMVEHILNTEENWNSWKNEGCPSFVKERPAETKPIRPSRKRQAP 420
Query: 71 ----------RWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAG 120
+ +GN EL++LW N A R P++ ++++ + DP+
Sbjct: 421 EDFLGKGPDRKILMGNDELTRLWNLNPDNMEACKSENREFMPSLEDFFEEAIEQADPANM 480
Query: 121 IEAEY 125
+E EY
Sbjct: 481 VEDEY 485
>UNIPROTKB|I3LE05 [details] [associations]
symbol:THOC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000445 "THO complex part of transcription export complex"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017 SMART:SM00005
GO:GO:0005737 GO:GO:0006915 GO:GO:0007165 Gene3D:1.10.533.10
InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0046784 GO:GO:0032784
GO:GO:0000445 InterPro:IPR021861 Pfam:PF11957 OMA:ILMGNEE
GeneTree:ENSGT00390000016232 Ensembl:ENSSSCT00000029403
Uniprot:I3LE05
Length = 662
Score = 174 (66.3 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 43/138 (31%), Positives = 68/138 (49%)
Query: 12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQ-SMEKKAVQDGPKKRRP 70
V +LL PP G+ F +EHIL E+NW WK +GCP F K+ + + K + K+ P
Sbjct: 363 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRVVRKRTAP 422
Query: 71 ----------RWRLGNKELSQLWKWADQNPNALTDPQRVRT--PAITEYWKPLADDMDPS 118
+ +GN+EL++LW N A R R P + E+++ + DP
Sbjct: 423 EDFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSETRPREYMPTLEEFFEEAIEQADPE 482
Query: 119 AGIEAEYHHKNSRVSFGY 136
+E EY N+ ++G+
Sbjct: 483 NMVENEYKAVNNS-NYGW 499
>WB|WBGene00020172 [details] [associations]
symbol:thoc-1 species:6239 "Caenorhabditis elegans"
[GO:0000347 "THO complex" evidence=ISS] InterPro:IPR021861
Pfam:PF11957 eggNOG:NOG275387 KO:K12878
GeneTree:ENSGT00390000016232 EMBL:FO081698 RefSeq:NP_493796.2
UniGene:Cel.14485 ProteinModelPortal:Q9N5E3 SMR:Q9N5E3
STRING:Q9N5E3 PaxDb:Q9N5E3 EnsemblMetazoa:T02H6.2 GeneID:173460
KEGG:cel:CELE_T02H6.2 UCSC:T02H6.2 CTD:173460 WormBase:T02H6.2
InParanoid:Q9N5E3 OMA:VEENMNE NextBio:879757 Uniprot:Q9N5E3
Length = 665
Score = 156 (60.0 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 37/130 (28%), Positives = 65/130 (50%)
Query: 5 MKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDG 64
+ CE++ +LL T P+G F+ ++ I+ RE+ W WK C F +++ +K A+Q
Sbjct: 347 VSECEDKCYRLLADTMPRGTAFVAGLKRIMLREQEWNTWKNANCADFSEKA-DKGAMQMY 405
Query: 65 PKKRRPRWR-----LGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSA 119
K++R + LG EL++LW A +R P + ++ + D+MDP
Sbjct: 406 KKRQRIPFNPNSLDLGTPELTKLWTNEPDVLKACKSDKRKFIPKLPDFIRDPIDEMDPEQ 465
Query: 120 GIEAEYHHKN 129
+E +Y N
Sbjct: 466 QVEEQYKQIN 475
>FB|FBgn0037382 [details] [associations]
symbol:Hpr1 "Hpr1" species:7227 "Drosophila melanogaster"
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0007165 "signal
transduction" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=NAS] [GO:0031990 "mRNA export from nucleus in response to
heat stress" evidence=IMP] [GO:0000347 "THO complex" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000488 Pfam:PF00531 PROSITE:PS50017
EMBL:AE014297 GO:GO:0007165 Gene3D:1.10.533.10 InterPro:IPR011029
SUPFAM:SSF47986 GO:GO:0031990 InterPro:IPR021861 Pfam:PF11957
GO:GO:0000347 eggNOG:NOG275387 KO:K12878
GeneTree:ENSGT00390000016232 EMBL:AY122188 EMBL:AJ556821
RefSeq:NP_649594.1 UniGene:Dm.31292 SMR:Q9VNI8 DIP:DIP-48907N
STRING:Q9VNI8 EnsemblMetazoa:FBtr0078667 GeneID:40723
KEGG:dme:Dmel_CG2031 UCSC:CG2031-RA CTD:40723 FlyBase:FBgn0037382
InParanoid:Q9VNI8 OMA:DNLQACK OrthoDB:EOG4T1G2K GenomeRNAi:40723
NextBio:820267 Uniprot:Q9VNI8
Length = 701
Score = 148 (57.2 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 36/91 (39%), Positives = 51/91 (56%)
Query: 5 MKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDG 64
+K E RV KLLE TPP GK F ++ H+L RE+ W WK +GC F+K + +D
Sbjct: 363 IKETESRVYKLLEETPPYGKRFSRTVYHMLAREEMWNNWKNEGCKEFKKPEEPTLSEEDS 422
Query: 65 -PK-KRRPRWRLGN--KELSQLWKWADQNPN 91
P +RPR LG+ ++ S+ K+ N N
Sbjct: 423 KPTPNKRPRRPLGDALRDASRSGKFYLGNDN 453
>DICTYBASE|DDB_G0275717 [details] [associations]
symbol:thoc1 "putative THO1 protein (nuclear matrix
protein p84)" species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0275717 GenomeReviews:CM000151_GR EMBL:AAFI02000013
InterPro:IPR021861 Pfam:PF11957 eggNOG:NOG275387 KO:K12878
RefSeq:XP_643594.2 STRING:Q552T7 EnsemblProtists:DDB0233560
GeneID:8620181 KEGG:ddi:DDB_G0275717 OMA:SFSTHIN
ProtClustDB:CLSZ2848579 Uniprot:Q552T7
Length = 726
Score = 141 (54.7 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 35/101 (34%), Positives = 54/101 (53%)
Query: 14 KLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDG-CPPFEKQSMEK--KAVQDGPKKRRP 70
K+L T P G+ F + + IL+REKNW+ WKRD C PFE+ K + K
Sbjct: 424 KILSNTNPNGEYFSNCLSSILKREKNWIIWKRDNQCKPFERPPCSPIVKKKKLFRKTALT 483
Query: 71 RWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPL 111
+ LGN+ELS+LW + PN + + + ++ + +PL
Sbjct: 484 KISLGNQELSRLWNLSGA-PNDRSYLKTQNSVSLDSFIEPL 523
>POMBASE|SPCP25A2.03 [details] [associations]
symbol:SPCP25A2.03 "THO complex subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000347 "THO complex"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=ISS]
[GO:0006406 "mRNA export from nucleus" evidence=IC]
PomBase:SPCP25A2.03 EMBL:CU329672 GO:GO:0006368 GO:GO:0006406
InterPro:IPR021861 Pfam:PF11957 GO:GO:0000347 eggNOG:NOG275387
KO:K12878 PIR:T50450 RefSeq:NP_588092.1 STRING:Q9URT2
EnsemblFungi:SPCP25A2.03.1 GeneID:2539396 KEGG:spo:SPCP25A2.03
OMA:REANWIR OrthoDB:EOG4X3M8G NextBio:20800560 Uniprot:Q9URT2
Length = 752
Score = 122 (48.0 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 41/138 (29%), Positives = 65/138 (47%)
Query: 9 EERVKKLLEMTPPKGKDFLHS---------IEHILEREKNWVWWKRDGCPPFEKQSMEKK 59
+E KL E++ + FLH+ I+ I+ E NW WK GCP EK ++K
Sbjct: 360 DEDTSKLNELSK-EAYSFLHTARCGSVQRTIKEIIHIEGNWKLWKGLGCPSLEKPLVDKA 418
Query: 60 AVQD---GPKK--RRP---RWRLGNKELSQLWKWADQNP-NALTDPQRVRTPAITEYWKP 110
A+ + G KK P R+ +GN LS+LW+ A +N + L +R R P+ +
Sbjct: 419 AIDEAVEGLKKLTNTPVKLRFAMGNAALSRLWEQAGENTLDDLKKEERYRIPSPESFLSG 478
Query: 111 L-ADDMDPSAGIEAEYHH 127
+ AD + + + H
Sbjct: 479 VKADKFEIEEAVRDDDKH 496
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.433 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 136 136 0.00091 102 3 11 23 0.48 31
30 0.45 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 13
No. of states in DFA: 608 (65 KB)
Total size of DFA: 174 KB (2100 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.06u 0.18s 17.24t Elapsed: 00:00:01
Total cpu time: 17.07u 0.18s 17.25t Elapsed: 00:00:01
Start: Thu May 9 19:32:39 2013 End: Thu May 9 19:32:40 2013