BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032647
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R3N6|THOC1_MOUSE THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=1 SV=1
Length = 657
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQ---------SMEKKA-- 60
V +LL PP G+ F +EHIL E+NW WK +GCP F K+ + K+A
Sbjct: 360 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERASDTKPTRVVRKRAAP 419
Query: 61 ---VQDGPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDP 117
+ GP K + +GN+EL++LW N A R P + E+++ + DP
Sbjct: 420 EDFLGKGPNK---KILIGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADP 476
Query: 118 SAGIEAEYHHKNS 130
+E+EY N+
Sbjct: 477 ENMVESEYKAVNN 489
>sp|Q96FV9|THOC1_HUMAN THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=1 SV=1
Length = 657
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 12 VKKLLEMTPPKGKDFLHSIEHILEREKNWVWWKRDGCPPFEKQSM----------EKKAV 61
V +LL PP G+ F +EHIL E+NW WK +GCP F K+ ++ A
Sbjct: 360 VYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRIIRKRTAP 419
Query: 62 QD----GPKKRRPRWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDP 117
+D GP K + +GN+EL++LW N A R P + E+++ + DP
Sbjct: 420 EDFLGKGPTK---KILMGNEELTRLWNLCPDNMEACKSETREHMPTLEEFFEEAIEQADP 476
Query: 118 SAGIEAEYHHKNS 130
+E EY N+
Sbjct: 477 ENMVENEYKAVNN 489
>sp|Q9URT2|YJU3_SCHPO Uncharacterized protein P25A2.03 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCP25A2.03 PE=1 SV=1
Length = 752
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 19/113 (16%)
Query: 9 EERVKKLLEMTPPKGKDFLHS---------IEHILEREKNWVWWKRDGCPPFEKQSMEKK 59
+E KL E++ + FLH+ I+ I+ E NW WK GCP EK ++K
Sbjct: 360 DEDTSKLNELSK-EAYSFLHTARCGSVQRTIKEIIHIEGNWKLWKGLGCPSLEKPLVDKA 418
Query: 60 AVQ---DGPKKR-----RPRWRLGNKELSQLWKWADQNP-NALTDPQRVRTPA 103
A+ +G KK + R+ +GN LS+LW+ A +N + L +R R P+
Sbjct: 419 AIDEAVEGLKKLTNTPVKLRFAMGNAALSRLWEQAGENTLDDLKKEERYRIPS 471
>sp|P59924|THOC1_RAT THO complex subunit 1 OS=Rattus norvegicus GN=Thoc1 PE=2 SV=1
Length = 343
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 68 RRP--RWRLGNKELSQLWKWADQNPNALTDPQRVRTPAITEYWKPLADDMDPSAGIEAEY 125
+RP + +GN+EL++LW N A R P + E+++ + D +E+EY
Sbjct: 103 KRPNKKILIGNEELTRLWNLCPDNMEACKLETREYMPILEEFFEEAIEQADAENMVESEY 162
Query: 126 HHKNS 130
N+
Sbjct: 163 KAINN 167
>sp|Q9PPE4|SYV_CAMJE Valine--tRNA ligase OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=valS PE=3 SV=1
Length = 870
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 6 KSCEERVKKLLEMTPP--------KGKDFLHSIEHILEREKNWVWWKRDGCPPFE----- 52
K+ +E+ K M PP G +++ I+ R K +K P +
Sbjct: 26 KTIQEKDKNFCIMMPPPNVTGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIA 85
Query: 53 -KQSMEKKAVQDGPKKRRPRWRLGNKE-LSQLWKWADQNPNALTDPQRVRTPAITEYWKP 110
+ +EK+ + G KK LG +E + ++W+W +Q+ + D ++RT IT W
Sbjct: 86 TQNVVEKQLLTQGIKKEE----LGREEFIEKVWEWKEQSGGKILD--QMRTLGITPAWSR 139
Query: 111 LADDMD 116
L MD
Sbjct: 140 LRFTMD 145
>sp|Q5HV17|SYV_CAMJR Valine--tRNA ligase OS=Campylobacter jejuni (strain RM1221) GN=valS
PE=3 SV=1
Length = 870
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 21/126 (16%)
Query: 6 KSCEERVKKLLEMTPP--------KGKDFLHSIEHILEREKNWVWWKRDGCPPFE----- 52
K+ +E+ K M PP G +++ I+ R K +K P +
Sbjct: 26 KTIQEKDKNFCIMMPPPNVTGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIA 85
Query: 53 -KQSMEKKAVQDGPKKRRPRWRLGNKE-LSQLWKWADQNPNALTDPQRVRTPAITEYWKP 110
+ +EK+ + G KK LG +E + ++W+W +Q+ + D ++RT IT W
Sbjct: 86 TQNVVEKQLLAQGIKKEE----LGREEFIEKVWEWKEQSGGKILD--QMRTLGITPAWSR 139
Query: 111 LADDMD 116
L MD
Sbjct: 140 LRFTMD 145
>sp|P41593|PTH1R_MOUSE Parathyroid hormone/parathyroid hormone-related peptide receptor
OS=Mus musculus GN=Pth1r PE=2 SV=2
Length = 591
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 24 KDFLHSIEHILEREKNWVWWKRDGCPPFEK-------QSMEKKAVQDGPKKR-RP 70
K+ LH+ +I+E +K W G P EK +S E K V G ++R RP
Sbjct: 53 KEVLHTAANIMESDKGWTPASTSGKPRKEKAPGKFYPESKENKDVPTGSRRRGRP 107
>sp|P25961|PTH1R_RAT Parathyroid hormone/parathyroid hormone-related peptide receptor
OS=Rattus norvegicus GN=Pth1r PE=2 SV=1
Length = 591
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 24 KDFLHSIEHILEREKNWVWWKRDGCPPFEK-------QSMEKKAVQDGPKKR-RP 70
K+ LH+ +I+E +K W G P EK +S E K V G ++R RP
Sbjct: 53 KEVLHTAANIMESDKGWTPASTSGKPRKEKASGKFYPESKENKDVPTGSRRRGRP 107
>sp|P48204|GRPE_FRATU Protein GrpE OS=Francisella tularensis GN=grpE PE=3 SV=1
Length = 195
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 29 SIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDGPKKRRPR 71
S+E LER K+ + D C F+ +++ KA + +KR R
Sbjct: 37 SVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79
>sp|Q2A329|GRPE_FRATH Protein GrpE OS=Francisella tularensis subsp. holarctica (strain
LVS) GN=grpE PE=3 SV=1
Length = 195
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 29 SIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDGPKKRRPR 71
S+E LER K+ + D C F+ +++ KA + +KR R
Sbjct: 37 SVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79
>sp|A7NCM8|GRPE_FRATF Protein GrpE OS=Francisella tularensis subsp. holarctica (strain
FTNF002-00 / FTA) GN=grpE PE=3 SV=1
Length = 195
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 29 SIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDGPKKRRPR 71
S+E LER K+ + D C F+ +++ KA + +KR R
Sbjct: 37 SVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79
>sp|A4IX27|GRPE_FRATW Protein GrpE OS=Francisella tularensis subsp. tularensis (strain
WY96-3418) GN=grpE PE=3 SV=1
Length = 195
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 29 SIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDGPKKRRPR 71
S+E LER K+ + D C F+ +++ KA + +KR R
Sbjct: 37 SVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79
>sp|Q5NFG6|GRPE_FRATT Protein GrpE OS=Francisella tularensis subsp. tularensis (strain
SCHU S4 / Schu 4) GN=grpE PE=3 SV=1
Length = 195
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 29 SIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDGPKKRRPR 71
S+E LER K+ + D C F+ +++ KA + +KR R
Sbjct: 37 SVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79
>sp|Q14GW8|GRPE_FRAT1 Protein GrpE OS=Francisella tularensis subsp. tularensis (strain
FSC 198) GN=grpE PE=3 SV=1
Length = 195
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 29 SIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDGPKKRRPR 71
S+E LER K+ + D C F+ +++ KA + +KR R
Sbjct: 37 SVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79
>sp|Q0BLK5|GRPE_FRATO Protein GrpE OS=Francisella tularensis subsp. holarctica (strain
OSU18) GN=grpE PE=3 SV=1
Length = 195
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 29 SIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDGPKKRRPR 71
S+E LER K+ + D C F+ +++ KA + +KR R
Sbjct: 37 SVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79
>sp|A0Q7F1|GRPE_FRATN Protein GrpE OS=Francisella tularensis subsp. novicida (strain
U112) GN=grpE PE=3 SV=1
Length = 195
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 29 SIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDGPKKRRPR 71
S+E LER K+ + D C F+ +++ KA + +KR R
Sbjct: 37 SVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79
>sp|B2SGV9|GRPE_FRATM Protein GrpE OS=Francisella tularensis subsp. mediasiatica
(strain FSC147) GN=grpE PE=3 SV=1
Length = 195
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 29 SIEHILEREKNWVWWKRDGCPPFEKQSMEKKAVQDGPKKRRPR 71
S+E LER K+ + D C F+ +++ KA + +KR R
Sbjct: 37 SVEEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAER 79
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,694,174
Number of Sequences: 539616
Number of extensions: 2495036
Number of successful extensions: 4131
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 4107
Number of HSP's gapped (non-prelim): 72
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)