Query 032647
Match_columns 136
No_of_seqs 105 out of 154
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 06:09:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g1g_A GAG polyprotein, capsid 47.8 8.5 0.00029 25.5 1.7 32 7-38 46-77 (87)
2 2wh0_Q Pkcev3, protein kinase 46.8 14 0.00048 19.4 2.1 16 2-17 12-27 (31)
3 1wh6_A CUT-like 2, homeobox pr 38.7 40 0.0014 22.7 4.0 38 6-43 20-65 (101)
4 2zvk_U DNA polymerase ETA, pro 34.2 19 0.00064 18.5 1.3 13 100-112 8-20 (26)
5 1jek_B ENV polyprotein; envelo 28.7 51 0.0017 18.2 2.6 17 2-18 6-22 (36)
6 2z15_A Protein TOB1; human TOB 26.1 49 0.0017 23.2 2.8 35 1-35 8-44 (130)
7 1q2z_A ATP-dependent DNA helic 25.2 1.6E+02 0.0055 19.8 5.5 34 2-37 21-55 (120)
8 1p8b_A PEA albumin 1, subunit 24.8 19 0.00066 20.0 0.4 12 46-57 5-16 (37)
9 3e9v_A Protein BTG2; B-cell tr 24.8 1E+02 0.0036 21.2 4.3 35 1-35 2-40 (120)
10 1ju8_A Leginsulin, albumin 1; 24.5 19 0.00066 20.0 0.4 12 46-57 5-16 (37)
11 3vh7_B CP32M; 6-helix bundle, 24.4 68 0.0023 16.9 2.6 18 2-19 14-31 (34)
12 3vgx_D Envelope glycoprotein G 22.7 78 0.0027 16.4 2.6 17 2-18 12-28 (32)
No 1
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=47.85 E-value=8.5 Score=25.54 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhhh
Q 032647 7 SCEERVKKLLEMTPPKGKDFLHSIEHILEREK 38 (136)
Q Consensus 7 ~~~~~v~~lL~~t~p~G~~F~~~V~~IL~RE~ 38 (136)
.+...|.++|+.-+.+-..=.++|++||.|++
T Consensus 46 NANpdCk~Il~~~~~~~~~~~e~Ik~~l~~~~ 77 (87)
T 3g1g_A 46 KSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQK 77 (87)
T ss_dssp HSCHHHHHHHHTSCTTCCSHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHhCCCCCCChHHHHHHHHHHhh
Confidence 34456778888766666666899999999986
No 2
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=46.76 E-value=14 Score=19.36 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHH
Q 032647 2 KEEMKSCEERVKKLLE 17 (136)
Q Consensus 2 ~~~i~~~~~~v~~lL~ 17 (136)
+.||+++...|.+.|.
T Consensus 12 dqeikelennirkals 27 (31)
T 2wh0_Q 12 DQEIKELENNIRKALS 27 (31)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6799999999999875
No 3
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=38.74 E-value=40 Score=22.68 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCCChHHHHH--------HHHHHHHhhhchHHh
Q 032647 6 KSCEERVKKLLEMTPPKGKDFLH--------SIEHILEREKNWVWW 43 (136)
Q Consensus 6 ~~~~~~v~~lL~~t~p~G~~F~~--------~V~~IL~RE~nWv~W 43 (136)
++...+|...|+.+....+.|++ +|..||.+-+-|..=
T Consensus 20 k~I~~~ike~L~~~~isQ~~FA~~ILgrsqgtlSdlL~~PKpW~~L 65 (101)
T 1wh6_A 20 LELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKL 65 (101)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTC
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHccCcCcHHHHhcCCCCHHHH
Confidence 46778899999999999999998 667888888877643
No 4
>2zvk_U DNA polymerase ETA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, TLS polymerase; HET: DNA; 2.70A {Homo sapiens}
Probab=34.17 E-value=19 Score=18.48 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=9.5
Q ss_pred cCCCHHHhhhhhh
Q 032647 100 RTPAITEYWKPLA 112 (136)
Q Consensus 100 ~~Psl~~f~~~~~ 112 (136)
-.-.|++||+++-
T Consensus 8 g~~TLesFFK~L~ 20 (26)
T 2zvk_U 8 GMQTLESFFKPLT 20 (26)
T ss_pred ccccHHHHhccCC
Confidence 3448999998764
No 5
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=28.71 E-value=51 Score=18.20 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHh
Q 032647 2 KEEMKSCEERVKKLLEM 18 (136)
Q Consensus 2 ~~~i~~~~~~v~~lL~~ 18 (136)
+.||...+..||.||.+
T Consensus 6 ereI~~~t~nIy~LLee 22 (36)
T 1jek_B 6 EEEIEQHEGNLSLLLRE 22 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46899999999999986
No 6
>2z15_A Protein TOB1; human TOB1 protein, phosphorylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} SCOP: d.370.1.1 PDB: 2d5r_B
Probab=26.06 E-value=49 Score=23.19 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=30.8
Q ss_pred ChhHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHH
Q 032647 1 MKEEMKSCEERVKKLLEMTPPK--GKDFLHSIEHILE 35 (136)
Q Consensus 1 ~~~~i~~~~~~v~~lL~~t~p~--G~~F~~~V~~IL~ 35 (136)
|+.||+.+..-|.++|..+-|. -..|.+.+..+|.
T Consensus 8 M~~EI~~av~Fl~~~L~~klp~~~v~~F~~~L~~~L~ 44 (130)
T 2z15_A 8 MQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLK 44 (130)
T ss_dssp SHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999877676 5789999999995
No 7
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=25.24 E-value=1.6e+02 Score=19.83 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hh
Q 032647 2 KEEMKSCEERVKKLLEMTPPKGKDFLHSIEHILE-RE 37 (136)
Q Consensus 2 ~~~i~~~~~~v~~lL~~t~p~G~~F~~~V~~IL~-RE 37 (136)
++=++.....|.+||... .+..|.++++.|-. |+
T Consensus 21 ~~A~~qm~~vI~~Ll~~s--~~~~y~ka~ecl~~~R~ 55 (120)
T 1q2z_A 21 EEASNQLINHIEQFLDTN--ETPYFMKSIDCIRAFRE 55 (120)
T ss_dssp THHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCc--ccchHHHHHHHHHHHHH
Confidence 345788899999999953 78888888888765 54
No 8
>1p8b_A PEA albumin 1, subunit B; inhibitor cystine-knot, plant protein; NMR {Pisum sativum} SCOP: g.3.6.4
Probab=24.80 E-value=19 Score=20.03 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=9.8
Q ss_pred cCCCCcccccch
Q 032647 46 DGCPPFEKQSME 57 (136)
Q Consensus 46 egCp~fek~~~~ 57 (136)
.-|.|||.||..
T Consensus 5 gvCSPFemPPC~ 16 (37)
T 1p8b_A 5 GVCSPFEMPPCG 16 (37)
T ss_dssp EEECTTCSSGGG
T ss_pred ccccCcccCCCC
Confidence 359999999884
No 9
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=24.79 E-value=1e+02 Score=21.16 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=30.3
Q ss_pred ChhHHHHHHHHHHHHHHhC--CCC--hHHHHHHHHHHHH
Q 032647 1 MKEEMKSCEERVKKLLEMT--PPK--GKDFLHSIEHILE 35 (136)
Q Consensus 1 ~~~~i~~~~~~v~~lL~~t--~p~--G~~F~~~V~~IL~ 35 (136)
|+.||+.+..=|..+|+.. -|. -..|++.+..+|.
T Consensus 2 M~~EI~~av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~ 40 (120)
T 3e9v_A 2 MLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALT 40 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999976 343 5789999999998
No 10
>1ju8_A Leginsulin, albumin 1; T-knot, hormone/growth factor complex; NMR {Synthetic} SCOP: g.3.6.4
Probab=24.53 E-value=19 Score=20.02 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=9.7
Q ss_pred cCCCCcccccch
Q 032647 46 DGCPPFEKQSME 57 (136)
Q Consensus 46 egCp~fek~~~~ 57 (136)
.-|.|||.||..
T Consensus 5 gvCSPFemPPC~ 16 (37)
T 1ju8_A 5 GACSPFEVPPCR 16 (37)
T ss_dssp SEECSSSSSSSS
T ss_pred cccCCcccCCCC
Confidence 359999999884
No 11
>3vh7_B CP32M; 6-helix bundle, membrane fusion inhibition, membrane protein inhibitor complex; 2.02A {Human immunodeficiency virus type 1} PDB: 3vgy_D
Probab=24.43 E-value=68 Score=16.89 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHhC
Q 032647 2 KEEMKSCEERVKKLLEMT 19 (136)
Q Consensus 2 ~~~i~~~~~~v~~lL~~t 19 (136)
+.||...+..+|.||.+.
T Consensus 14 ekei~n~t~~Iy~lle~s 31 (34)
T 3vh7_B 14 EREIENYTKLIYKILEES 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 458899999999999863
No 12
>3vgx_D Envelope glycoprotein GP160; 6-helix bundle, membrane fusion, membrane protein; HET: GOL; 1.74A {Human immunodeficiency virus type 1}
Probab=22.72 E-value=78 Score=16.35 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHh
Q 032647 2 KEEMKSCEERVKKLLEM 18 (136)
Q Consensus 2 ~~~i~~~~~~v~~lL~~ 18 (136)
+.||...+..+|.||.+
T Consensus 12 ~kei~n~t~~Iy~lle~ 28 (32)
T 3vgx_D 12 DREINNYTSLIHSLIEE 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35888999999999986
Done!