Query 032647
Match_columns 136
No_of_seqs 105 out of 154
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 06:09:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032647.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032647hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d1da1 a.28.3.1 (A:151-230) R 42.9 1.6 0.00012 27.0 -0.9 31 8-38 47-77 (80)
2 d2csfa1 a.35.1.7 (A:8-95) DNA- 30.5 13 0.00091 23.1 2.0 38 7-44 14-59 (88)
3 d1ju8a_ g.3.6.4 (A:) Leginsuli 28.8 5.3 0.00038 20.9 -0.1 12 46-57 5-16 (37)
4 d1p8ba_ g.3.6.4 (A:) Pab1, sub 27.9 7.4 0.00054 20.3 0.4 12 46-57 5-16 (37)
5 d2o4aa1 a.35.1.7 (A:370-452) D 25.3 10 0.00075 23.3 0.8 38 7-44 5-50 (83)
6 d1p16a2 d.142.2.3 (A:1-245) mR 23.4 13 0.00094 25.7 1.2 43 3-48 20-71 (245)
7 d1sd4a_ a.4.5.39 (A:) Penicill 22.3 8.1 0.00059 24.7 -0.2 33 5-40 4-36 (122)
8 d2z15a1 d.370.1.1 (A:10-126) T 20.5 37 0.0027 21.8 2.9 35 1-35 1-37 (117)
9 d1x2la1 a.35.1.7 (A:9-95) Home 19.7 88 0.0064 18.9 4.6 37 6-42 12-56 (87)
10 d3c7ba3 d.134.1.1 (A:167-238,A 19.3 34 0.0025 22.9 2.7 31 3-33 106-136 (185)
No 1
>d1d1da1 a.28.3.1 (A:151-230) RSV capsid protein {Rous sarcoma virus [TaxId: 11886]}
Probab=42.90 E-value=1.6 Score=26.96 Aligned_cols=31 Identities=19% Similarity=0.333 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhhh
Q 032647 8 CEERVKKLLEMTPPKGKDFLHSIEHILEREK 38 (136)
Q Consensus 8 ~~~~v~~lL~~t~p~G~~F~~~V~~IL~RE~ 38 (136)
+...|.++|+.-++....-.+||++++.||+
T Consensus 47 ANpdCk~iLral~~~~tl~~emi~~~~~~~~ 77 (80)
T d1d1da1 47 SQPDIQQLIRAAPSTLTTPGEIIKYVLDRQK 77 (80)
T ss_dssp SCHHHHHHHHTSCTTCCSTTHHHHHHHHHHC
T ss_pred cCHHHHHHHHhCCCCCCcHHHHHHHHHHHhh
Confidence 4567889999876555555789999999885
No 2
>d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.52 E-value=13 Score=23.11 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCChHHHHHH--------HHHHHHhhhchHHhH
Q 032647 7 SCEERVKKLLEMTPPKGKDFLHS--------IEHILEREKNWVWWK 44 (136)
Q Consensus 7 ~~~~~v~~lL~~t~p~G~~F~~~--------V~~IL~RE~nWv~WK 44 (136)
+...+|.+.|+...-.=+.|++. |..+|.+.+.|..|.
T Consensus 14 ~Ia~~i~~eL~~~~IsQ~~Fak~vL~rSQGtlSdLLrkpkp~~~~~ 59 (88)
T d2csfa1 14 AIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPEN 59 (88)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHccCcHHHHHHHcCCCCcchhh
Confidence 45678999999888888899874 566899999888884
No 3
>d1ju8a_ g.3.6.4 (A:) Leginsulin {Soybean (Glycine max) [TaxId: 3847]}
Probab=28.76 E-value=5.3 Score=20.89 Aligned_cols=12 Identities=33% Similarity=0.797 Sum_probs=9.7
Q ss_pred cCCCCcccccch
Q 032647 46 DGCPPFEKQSME 57 (136)
Q Consensus 46 egCp~fek~~~~ 57 (136)
..|.|||.||..
T Consensus 5 G~CspFemPpc~ 16 (37)
T d1ju8a_ 5 GACSPFEVPPCR 16 (37)
T ss_dssp SEECSSSSSSSS
T ss_pred ccccccccCCCC
Confidence 469999999873
No 4
>d1p8ba_ g.3.6.4 (A:) Pab1, subunit b {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=27.87 E-value=7.4 Score=20.32 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=9.9
Q ss_pred cCCCCcccccch
Q 032647 46 DGCPPFEKQSME 57 (136)
Q Consensus 46 egCp~fek~~~~ 57 (136)
..|.|||+||..
T Consensus 5 G~CSPFemPPCg 16 (37)
T d1p8ba_ 5 GVCSPFEMPPCG 16 (37)
T ss_dssp EEECTTCSSGGG
T ss_pred ccccccccCCCC
Confidence 469999999885
No 5
>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.33 E-value=10 Score=23.27 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHH--------HHHHHhhhchHHhH
Q 032647 7 SCEERVKKLLEMTPPKGKDFLHSI--------EHILEREKNWVWWK 44 (136)
Q Consensus 7 ~~~~~v~~lL~~t~p~G~~F~~~V--------~~IL~RE~nWv~WK 44 (136)
+...+|.+.|+...-.=+.|++.| ..+|.+-+.|..|.
T Consensus 5 eI~~~i~~eL~~~~IsQ~~Fak~vL~rSQgtlSdLL~~pkpw~~ls 50 (83)
T d2o4aa1 5 EIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTAS 50 (83)
T ss_dssp THHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCCCTTSCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHccCcHHHHHHHcCCCCchhhh
Confidence 456788999998888888998754 56888888887773
No 6
>d1p16a2 d.142.2.3 (A:1-245) mRNA capping enzyme alpha subunit {Yeast (Candida albicans) [TaxId: 5476]}
Probab=23.44 E-value=13 Score=25.69 Aligned_cols=43 Identities=33% Similarity=0.384 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHhCCCChHHH---------HHHHHHHHHhhhchHHhHhcCC
Q 032647 3 EEMKSCEERVKKLLEMTPPKGKDF---------LHSIEHILEREKNWVWWKRDGC 48 (136)
Q Consensus 3 ~~i~~~~~~v~~lL~~t~p~G~~F---------~~~V~~IL~RE~nWv~WK~egC 48 (136)
++...++.+|.++|..- ..| | .+-+..+|.+...||.||.+|=
T Consensus 20 ~~~~~~~~~v~~~~~~~-~~~--FpG~qPvs~~~~~~~~~L~~~~Y~v~eK~DG~ 71 (245)
T d1p16a2 20 EETKELRLMVAELLGRR-NTG--FPGSQPVSFERRHLEETLMQKDYFVCEKTDGL 71 (245)
T ss_dssp HHHHHHHHHHHHHHTCS-CCS--CCCEEEEECCHHHHHTHHHHSCEEEEEEECSE
T ss_pred HHHHHHHHHHHHHHCCC-CCC--CCCCCcccccHHHHHhhhCcCCEEEEECcCCe
Confidence 45677888899999852 222 3 2445667889999999999973
No 7
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=22.34 E-value=8.1 Score=24.67 Aligned_cols=33 Identities=12% Similarity=-0.001 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhhhch
Q 032647 5 MKSCEERVKKLLEMTPPKGKDFLHSIEHILEREKNW 40 (136)
Q Consensus 5 i~~~~~~v~~lL~~t~p~G~~F~~~V~~IL~RE~nW 40 (136)
|.+++..|+++|++.+| ..++-|...|..+..|
T Consensus 4 ls~~E~~VM~~lW~~~~---~t~~ei~~~l~~~~~~ 36 (122)
T d1sd4a_ 4 ISMAEWDVMNIIWDKKS---VSANEIVVEIQKYKEV 36 (122)
T ss_dssp CCHHHHHHHHHHHHSSS---EEHHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHHHHcCCC---CCHHHHHHHhhccCCC
Confidence 56788899999998654 4555555555555444
No 8
>d2z15a1 d.370.1.1 (A:10-126) TOB1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.52 E-value=37 Score=21.81 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=29.3
Q ss_pred ChhHHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHH
Q 032647 1 MKEEMKSCEERVKKLLEMTPPK--GKDFLHSIEHILE 35 (136)
Q Consensus 1 ~~~~i~~~~~~v~~lL~~t~p~--G~~F~~~V~~IL~ 35 (136)
|+.||+.+..=|.++|...-|. -..|++.+..+|.
T Consensus 1 M~~EI~~av~Fl~~~l~~kl~~~~~~~F~~~L~~~L~ 37 (117)
T d2z15a1 1 MQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLK 37 (117)
T ss_dssp SHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 7899999999999999866565 3578888888886
No 9
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.73 E-value=88 Score=18.85 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHH--------HHHHHhhhchHH
Q 032647 6 KSCEERVKKLLEMTPPKGKDFLHSI--------EHILEREKNWVW 42 (136)
Q Consensus 6 ~~~~~~v~~lL~~t~p~G~~F~~~V--------~~IL~RE~nWv~ 42 (136)
++...+|.++|+...-.=+.|++.| ..+|.+.+-|.+
T Consensus 12 ~~i~~~v~~~L~~~~I~Q~~Fa~~VL~rsQGtlSdLL~~PKPW~k 56 (87)
T d1x2la1 12 AEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARPKPWRK 56 (87)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHCCCCGGG
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHhhChHHHHHHHhCCCChHH
Confidence 4567889999999888889998754 568888777764
No 10
>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite reductase subunit alpha, DsrA {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=19.30 E-value=34 Score=22.92 Aligned_cols=31 Identities=13% Similarity=-0.018 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 032647 3 EEMKSCEERVKKLLEMTPPKGKDFLHSIEHI 33 (136)
Q Consensus 3 ~~i~~~~~~v~~lL~~t~p~G~~F~~~V~~I 33 (136)
+||.++.++|...-++.+-.|..|.++|+.|
T Consensus 106 dev~~~v~~ii~~y~e~g~~~ER~g~~ieRv 136 (185)
T d3c7ba3 106 DEIKEILEAIWDWWDEEGKFRERIGELIWRK 136 (185)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcchHHHHHHHc
Confidence 7899999999999999999999999999987
Done!