Citrus Sinensis ID: 032649

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARYSISKDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccEEccccccccEEEEEEccHHcHccccccccHcccccccccccccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mdqstnigetegLKTGLELVKSVSdkhldllrpsarysiskdtadrekgrytlirdpenfqfgiydkplpcfgcgvgwfSFLLGFVFPLMWYYgtflyfgnhcrkdprERAGLAASAIAAMACSVVMLVIVVFRLM
Flexible Loop (DISEMBL)
mdqstnigeteglktgLELVKSvsdkhldllrpsarysiskdtadrekgrytlIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Low Complexity Region (SEG)
MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARYSISKDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERaglaasaiaamaCSVVMLVIVVFRLM
Disordered region (IsUnstruct)
*************************************************RYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFR**
Disordered Region (DISOPRED)
************LKTGLELVKSVSDKHLDLLRPSARYS************YTL***PENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Disordered Region (DISEMBL)
*********TEGLKTGLELVKSVSDKHLDLLRPSARYSISKDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Disordered Region (DISPRO)
****TNIGETEGLKTGLELVKSVSDKHLDLLRPSARYSISKDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARYSISKDTADREKGRYTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q8L9S1	158	60S ribosomal protein L18	no	no	0.470	0.405	0.408	1e-05

>sp|Q8L9S1|R18A1_ARATH 60S ribosomal protein L18a-1 OS=Arabidopsis thaliana GN=RPL18AA PE=2 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 7/71 (9%)

Query: 66  DKPLPCFGCGVGWFSFLLGFVF-PLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACS 124
           +  LPC G G+GWF F++GF+F  + WY G F+        D RE+AG  A +IA    S
Sbjct: 87  EHELPCCGLGMGWFLFIMGFLFGGIPWYLGAFIVLVT--SVDHREKAGYVACSIA----S 140

Query: 125 VVMLVIVVFRL 135
           VV L+ V+  +
Sbjct: 141 VVYLIAVMLGM 151

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
255546063	142	conserved hypothetical protein [Ricinus	0.977	0.936	0.753	7e-47
356565888	144	PREDICTED: uncharacterized protein LOC10	1.0	0.944	0.669	8e-47
224091200	141	predicted protein [Populus trichocarpa]	0.970	0.936	0.731	2e-46
388497666	134	unknown [Lotus japonicus]	0.933	0.947	0.695	3e-46
388496450	134	unknown [Lotus japonicus]	0.933	0.947	0.687	1e-45
224142908	146	predicted protein [Populus trichocarpa]	0.970	0.904	0.678	2e-44
356558389	138	PREDICTED: uncharacterized protein LOC10	0.897	0.884	0.692	2e-44
356530415	138	PREDICTED: uncharacterized protein LOC10	0.897	0.884	0.685	5e-44
351722991	144	uncharacterized protein LOC100306083 [Gl	1.0	0.944	0.640	6e-44
225444836	140	PREDICTED: uncharacterized protein LOC10	0.970	0.942	0.724	1e-40

>gi|255546063|ref|XP_002514091.1| conserved hypothetical protein [Ricinus communis] gi|223546547|gb|EEF48045.1| conserved hypothetical protein [Ricinus communis]

 Score =  191 bits (486), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 118/138 (85%), Gaps = 5/138 (3%)

Query: 1   MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARY-SISK----DTADREKGRYTLIR 55
           MDQ+  I E E L+TGLELVKS SDKH+DLLRPSARY S SK    D ADREKG+YTL+R
Sbjct: 1   MDQNIAIEEKECLRTGLELVKSASDKHIDLLRPSARYYSASKGQAPDGADREKGKYTLLR 60

Query: 56  DPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAA 115
           D E+FQ GIYDKPLPCFGCGVGWFSFLLGF FPLMWYY TFLYFGN+ RKDPRERAGLAA
Sbjct: 61  DSEDFQIGIYDKPLPCFGCGVGWFSFLLGFAFPLMWYYATFLYFGNYYRKDPRERAGLAA 120

Query: 116 SAIAAMACSVVMLVIVVF 133
           +AIAAMA SV++++I+ +
Sbjct: 121 AAIAAMAFSVLLMIIIAY 138

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565888|ref|XP_003551168.1| PREDICTED: uncharacterized protein LOC100795083 [Glycine max]

 Score =  191 bits (485), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 93/139 (66%), Positives = 108/139 (77%), Gaps = 3/139 (2%)

Query: 1   MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSAR-YS--ISKDTADREKGRYTLIRDP 57
           MD+   + ET  L+T +ELV+SVSDKH DLLRPSAR YS   S DT  R KG+Y LIRDP
Sbjct: 1   MDKDARVEETVDLRTNVELVRSVSDKHHDLLRPSARNYSRGQSTDTTGRGKGKYALIRDP 60

Query: 58  ENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASA 117
           E+FQ G+YDKPLPCFGCG+GWFSFL GF+ P MW+Y T LYFGNH RKDPRERAGL ASA
Sbjct: 61  EDFQMGVYDKPLPCFGCGIGWFSFLFGFLCPPMWFYATILYFGNHYRKDPRERAGLGASA 120

Query: 118 IAAMACSVVMLVIVVFRLM 136
           IAA+ CSV  L+I V  ++
Sbjct: 121 IAALVCSVTSLIIGVILVL 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091200|ref|XP_002309204.1| predicted protein [Populus trichocarpa] gi|222855180|gb|EEE92727.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/138 (73%), Positives = 115/138 (83%), Gaps = 6/138 (4%)

Query: 1   MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARYSISK-----DTADREKGRYTLIR 55
           MD +  I E +G + G+ELVKSVSDKH+DLLRPSARY  +      D AD EKG+YTLIR
Sbjct: 1   MDPNAAIEERKGFRNGVELVKSVSDKHIDLLRPSARYYTASKGQATDAADGEKGKYTLIR 60

Query: 56  DPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAA 115
           DPE+FQ GIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGN+ R+DPRERAGLAA
Sbjct: 61  DPEDFQ-GIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNYHRRDPRERAGLAA 119

Query: 116 SAIAAMACSVVMLVIVVF 133
           +AIAAM  SVV++VI  +
Sbjct: 120 AAIAAMVFSVVLMVIAAY 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497666|gb|AFK36899.1| unknown [Lotus japonicus]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 89/128 (69%), Positives = 104/128 (81%), Gaps = 1/128 (0%)

Query: 9   ETEGLKTGLELVKSVSDKHLDLLRPSAR-YSISKDTADREKGRYTLIRDPENFQFGIYDK 67
           ET  L+ G+EL + VSDKHLDLLRPSAR YS+ +D  D +KG+Y LIRDPE+FQ G+YDK
Sbjct: 3   ETADLRNGVELTRPVSDKHLDLLRPSARNYSVFRDATDNDKGKYALIRDPEDFQAGLYDK 62

Query: 68  PLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVM 127
           PLPCFGCGVGWFSFL GF+ PL+WYY T LYFGN+ RKDPRERAGL ASAIAA+ CSV +
Sbjct: 63  PLPCFGCGVGWFSFLCGFLCPLLWYYATILYFGNYYRKDPRERAGLGASAIAALLCSVAL 122

Query: 128 LVIVVFRL 135
           L+  V  L
Sbjct: 123 LITGVILL 130

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496450|gb|AFK36291.1| unknown [Lotus japonicus]

 Score =  187 bits (474), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 88/128 (68%), Positives = 103/128 (80%), Gaps = 1/128 (0%)

Query: 9   ETEGLKTGLELVKSVSDKHLDLLRPSAR-YSISKDTADREKGRYTLIRDPENFQFGIYDK 67
           ET  L+ G+EL + VSDKHLDLLRPSAR YS+ +D  D +KG+Y LIRDPE+FQ G+YDK
Sbjct: 3   ETADLRNGVELTRPVSDKHLDLLRPSARNYSVFRDATDNDKGKYALIRDPEDFQAGLYDK 62

Query: 68  PLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVM 127
           PLPCFGCGVGWFSFL GF+ P +WYY T LYFGN+ RKDPRERAGL ASAIAA+ CSV +
Sbjct: 63  PLPCFGCGVGWFSFLCGFLCPPLWYYATILYFGNYYRKDPRERAGLGASAIAALLCSVAL 122

Query: 128 LVIVVFRL 135
           L+  V  L
Sbjct: 123 LITGVILL 130

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142908|ref|XP_002324774.1| predicted protein [Populus trichocarpa] gi|222866208|gb|EEF03339.1| predicted protein [Populus trichocarpa]

 Score =  183 bits (465), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 114/143 (79%), Gaps = 11/143 (7%)

Query: 1   MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARYSISK----------DTADREKGR 50
           MD + +I E +G + G+E VKSVSDKH+DLLRPSARY  +           D  D EKG+
Sbjct: 1   MDPNASIDERDGFRNGVEKVKSVSDKHIDLLRPSARYYATSKELLMVGQVTDATDGEKGK 60

Query: 51  YTLIRDPENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRER 110
           YTL+ DPE+FQ GIYDKPLPCFGCG+GWFSFLLGFVFPLMWYYGTFLYFGN+ RKDPRER
Sbjct: 61  YTLVGDPEDFQ-GIYDKPLPCFGCGIGWFSFLLGFVFPLMWYYGTFLYFGNYYRKDPRER 119

Query: 111 AGLAASAIAAMACSVVMLVIVVF 133
           AGLAA+AI AM+ SVV+LVI+ +
Sbjct: 120 AGLAAAAIGAMSFSVVLLVIIAY 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558389|ref|XP_003547489.1| PREDICTED: uncharacterized protein LOC100814053 [Glycine max]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/127 (69%), Positives = 102/127 (80%), Gaps = 5/127 (3%)

Query: 9   ETEGLKTGLELVKSVSDKHLDLLRPSAR-YSI----SKDTADREKGRYTLIRDPENFQFG 63
           ET  L+ G+EL  SVSDKHLDLLRPSAR YSI    + D AD EKG YTLIR PE+FQ G
Sbjct: 3   ETVDLRNGVELAASVSDKHLDLLRPSARNYSIFRGQAMDVADHEKGNYTLIRGPEDFQTG 62

Query: 64  IYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMAC 123
           +YDKPLPC+GCG+GWFSFL GF+ P +WYY T LYFGN+ RKDPRERAGL ASAIAA+ C
Sbjct: 63  LYDKPLPCYGCGIGWFSFLFGFLCPPLWYYATILYFGNYYRKDPRERAGLGASAIAALIC 122

Query: 124 SVVMLVI 130
           SV +L++
Sbjct: 123 SVALLIV 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530415|ref|XP_003533777.1| PREDICTED: uncharacterized protein LOC100791750 [Glycine max]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 102/127 (80%), Gaps = 5/127 (3%)

Query: 9   ETEGLKTGLELVKSVSDKHLDLLRPSAR-YSI----SKDTADREKGRYTLIRDPENFQFG 63
           ET  L+ G+EL  SVSDKHLDLLRPSAR YSI    + D AD EKG YTLI+ PE+FQ G
Sbjct: 3   ETVDLRNGVELATSVSDKHLDLLRPSARNYSIFRGQAMDVADHEKGNYTLIKGPEDFQTG 62

Query: 64  IYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMAC 123
           +YDKPLPC+GCG+GWFSFL GF+ P +WYY T LYFGN+ RKDPRERAGL ASAIAA+ C
Sbjct: 63  LYDKPLPCYGCGIGWFSFLFGFLCPPLWYYATILYFGNYYRKDPRERAGLGASAIAALIC 122

Query: 124 SVVMLVI 130
           SV +L++
Sbjct: 123 SVALLIV 129

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722991|ref|NP_001237263.1| uncharacterized protein LOC100306083 [Glycine max] gi|255627483|gb|ACU14086.1| unknown [Glycine max]

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 89/139 (64%), Positives = 103/139 (74%), Gaps = 3/139 (2%)

Query: 1   MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSARY---SISKDTADREKGRYTLIRDP 57
           MD+   + ET  L+T +ELV+SVSDKH DLLRPSAR      S D A   KG+Y LIRDP
Sbjct: 1   MDKDARVEETVDLRTNVELVRSVSDKHHDLLRPSARNLSRGQSTDAAGHGKGKYALIRDP 60

Query: 58  ENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASA 117
           E FQ G+YDKPLP FGCG+GWFSFL GF+ P MW+Y T LYFGNH RKDPRERAGL ASA
Sbjct: 61  EVFQTGVYDKPLPFFGCGIGWFSFLFGFLCPPMWFYATILYFGNHYRKDPRERAGLGASA 120

Query: 118 IAAMACSVVMLVIVVFRLM 136
           IAA+ CSV  L+I V  ++
Sbjct: 121 IAALVCSVASLMIGVILVL 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444836|ref|XP_002280820.1| PREDICTED: uncharacterized protein LOC100255931 [Vitis vinifera] gi|297738623|emb|CBI27868.3| unnamed protein product [Vitis vinifera]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/138 (72%), Positives = 113/138 (81%), Gaps = 6/138 (4%)

Query: 4   STNIGE-TEGLKTGLELVKSVSDKHLDLLRPSARY-SISK----DTADREKGRYTLIRDP 57
             NIG+  EG +  LEL KS+SDKHLDLLRPS+RY SI K    D  DREKG+YTL+RD 
Sbjct: 2   DKNIGDDAEGQRNSLELTKSISDKHLDLLRPSSRYYSIFKGQAVDAVDREKGKYTLLRDV 61

Query: 58  ENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERAGLAASA 117
           E+FQ GI+DKPLPCFGCG+GWFSFLLGF+ PLMWYY T LYFGN  RKDPRERAGLAASA
Sbjct: 62  EDFQVGIFDKPLPCFGCGIGWFSFLLGFLCPLMWYYATILYFGNCYRKDPRERAGLAASA 121

Query: 118 IAAMACSVVMLVIVVFRL 135
           IAAMACS V+L+I+ FRL
Sbjct: 122 IAAMACSAVLLIILAFRL 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2120840	133	AT4G26060 [Arabidopsis thalian	0.933	0.954	0.576	5.7e-36
TAIR|locus:2164620	137	AT5G57060 [Arabidopsis thalian	0.963	0.956	0.511	4.6e-34
TAIR|locus:1006230715	103	AT1G54217 [Arabidopsis thalian	0.683	0.902	0.478	6.3e-21
TAIR|locus:2024847	153	AT1G53560 [Arabidopsis thalian	0.448	0.398	0.371	1.6e-06
TAIR|locus:505006347	132	AT3G14595 [Arabidopsis thalian	0.272	0.280	0.5	5.5e-06
TAIR|locus:2020317	154	AT1G17080 [Arabidopsis thalian	0.330	0.292	0.428	1.9e-05
TAIR|locus:2198269	312	RPL18AA "60S ribosomal protein	0.213	0.092	0.533	9.9e-05

TAIR|locus:2120840 AT4G26060 [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 75/130 (57%), Positives = 90/130 (69%)

Query:     7 IGET--EGLKTGLELVKSVSDKHLDLLRPSARY-SISKDTADREKGRYTLIRDPENFQFG 63
             +GET  E      ELVKSV+DKH  L+RP A+Y S  KD     KGRYTL++D +  + G
Sbjct:     1 MGETVKERGDGSAELVKSVADKHAGLVRPVAKYYSAVKDAMVCGKGRYTLVKDVDEVENG 60

Query:    64 IYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERXXXXXXXXXXXXC 123
             +YDKPLPCFGCG+GWFSFLLGFVFP +WYY T LYFGN+ RKDPRER             
Sbjct:    61 VYDKPLPCFGCGIGWFSFLLGFVFPFLWYYATLLYFGNYYRKDPRERAGLAASAITAMGF 120

Query:   124 SVVMLVIVVF 133
             S+++LVIVVF
Sbjct:   121 SLLLLVIVVF 130

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:2164620 AT5G57060 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 69/135 (51%), Positives = 91/135 (67%)

Query:     1 MDQSTNIGETEGLKTGLELVKSVSDKHLDLLRPSAR-YSISKDTADREKGRYTLIRDPEN 59
             MD+++      G +T  ELVK ++D+H  L++ ++R YS  KD   R K RYTL++D ++
Sbjct:     1 MDENSKFVSGNG-RT--ELVKFIADRHAKLMKQASRHYSAIKDAMARGKKRYTLVKDVDD 57

Query:    60 FQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRERXXXXXXXXX 119
              + G YDKPLPCFGCG+GWFSFLLGF+FP +WYY  FLYFGN+ RKDPRER         
Sbjct:    58 METGAYDKPLPCFGCGIGWFSFLLGFMFPFLWYYAAFLYFGNYYRKDPRERAGLAASAIT 117

Query:   120 XXXCSVVMLVIVVFR 134
                 S+V+LVI  FR
Sbjct:   118 AMGFSLVLLVIFAFR 132

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019835 "cytolysis" evidence=IEA

GO:0050829 "defense response to Gram-negative bacterium" evidence=IEA

TAIR|locus:1006230715 AT1G54217 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 45/94 (47%), Positives = 60/94 (63%)

Query:    40 SKDTADREKGRYTLIRDP-ENFQFGIYDKPLPCFGCGVGWFSFLLGFVFPLMWYYGTFLY 98
             S D  +++KG+Y LIRD  E+ + G + KPLPCFG G+GWFSFLLGFVFP  WY  TFLY
Sbjct:     3 STDLEEQKKGKYVLIRDDAEDSELGQFYKPLPCFGFGIGWFSFLLGFVFPFAWYVATFLY 62

Query:    99 FGNHCRKDPRERXXXXXXXXXXXXCSVVMLVIVV 132
               ++  +DPRER             SV +++ V+
Sbjct:    63 LISYYHRDPRERSGLAASAIAALIFSVALVITVL 96

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2024847 AT1G53560 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 26/70 (37%), Positives = 37/70 (52%)

Query:    69 LPCFGCGVGWFSFLLGFVF-PLMWYYGTFLYFGNHC-RKDPRERXXXXXXXXXXXXCSVV 126
             LPC G G+GWF F++GF+   + WY G F+     C R DPRE+             +VV
Sbjct:    84 LPCCGLGLGWFLFIIGFLLGAIPWYVGVFILV---CARIDPREKPGYVACTIA----AVV 136

Query:   127 MLVIVVFRLM 136
               + +VF +M
Sbjct:   137 ATITIVFGVM 146

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:505006347 AT3G14595 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query:    71 CFGCGVGWFSFLLGFVFPLMWYYGTFLYFGNHCRKDPRER 110
             C G G+GW  F+LGF F L WY G FL   +   ++PRER
Sbjct:    67 CCGIGIGWVLFILGFFFALPWYIGFFLLLFS---RNPRER 103

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

TAIR|locus:2020317 AT1G17080 [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query:    64 IYDKPLPCFGCGVGWFSFLLGFVF-PLMWYYGTFLY-FGNHCRKDPRER 110
             +  + LPC G G+GWF F++GF    + WY G F+  FG   R D RE+
Sbjct:    80 VRQRRLPCCGIGLGWFLFIVGFFLGAIPWYVGLFIMMFGR--RIDYREK 126

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2198269 RPL18AA "60S ribosomal protein L18A-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 9.9e-05, P = 9.9e-05
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query:    69 LPCFGCGVGWFSFLLGFVFP-LMWYYGTFL 97
             LPC G G+GWF F++GF+F  + WY G F+
Sbjct:    90 LPCCGLGMGWFLFIMGFLFGGIPWYLGAFI 119


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.327   0.145   0.470    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      136       124   0.00091  102 3  11 22  0.46    30
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  137 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.29u 0.13s 13.42t   Elapsed:  00:00:01
  Total cpu time:  13.30u 0.13s 13.43t   Elapsed:  00:00:01
  Start:  Thu May  9 19:40:22 2013   End:  Thu May  9 19:40:23 2013

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0006914 "autophagy" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PF10251	94	PEN-2: Presenilin enhancer-2 subunit of gamma secr	94.21
PF07787	248	DUF1625: Protein of unknown function (DUF1625); In	90.05
KOG3402	101	consensus Predicted membrane protein [Function unk	80.76

>PF10251 PEN-2: Presenilin enhancer-2 subunit of gamma secretase; InterPro: IPR019379 This entry is a short, 101 peptide protein, which is the smallest subunit of the gamma-secretase aspartyl protease complex

Probab=94.21  E-value=0.16  Score=37.46  Aligned_cols=49  Identities=31%  Similarity=0.604  Sum_probs=37.6

Q ss_pred             HHHHHHHH-hHHHHHHHHHhhcccccCC------cccchhHHHHHHHHHHHHHHHHH
Q 032649           80 SFLLGFVF-PLMWYYGTFLYFGNHCRKD------PRERAGLAASAIAAMACSVVMLV  129 (136)
Q Consensus        80 lFllGFf~-~ipWYvgafl~~~~~~r~D------pRErpGl~AcaIAa~v~tia~~I  129 (136)
                      .|+.||++ |..|.+-++-++- ....+      |+-|.=.+.|+|.+++.+++++.
T Consensus        13 yf~~GFa~LP~lW~vN~~wF~~-~af~~p~~~~~~~Ir~YVi~SaiG~~vw~v~l~~   68 (94)
T PF10251_consen   13 YFLGGFAFLPFLWLVNVVWFFR-EAFSKPPYDEQPQIRKYVIRSAIGFLVWTVVLIS   68 (94)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhH-HHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899988 7999999877652 33333      36677788999999999988765

It catalyses the intra-membrane cleavage of a subset of type I transmembrane proteins. The other active constituents of the complex are presenilin (PS) nicastrin and anterior pharynx defective-1 (APH-1) protein. Presenilin enhancer-2 (PEN-2) adopts a hairpin orientation in the membrane with its N- and C-terminal domains facing the luminal/extracellular space. The C-terminal domain maintains PS stability within the complex [].

>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species

Probab=90.05  E-value=1.3  Score=35.46  Aligned_cols=55  Identities=13%  Similarity=0.337  Sum_probs=34.6

Q ss_pred             hhHHHHHHHHHHHh--HHHHHHHHHhhcccccCCcccchhHHHHHHHHHHHHHHHHHHHHhhcC
Q 032649           75 GVGWFSFLLGFVFP--LMWYYGTFLYFGNHCRKDPRERAGLAASAIAAMACSVVMLVIVVFRLM  136 (136)
Q Consensus        75 GiGWflFllGFf~~--ipWYvgafl~~~~~~r~DpRErpGl~AcaIAa~v~tia~~Il~~~r~~  136 (136)
                      .+||++..+||.+-  +.+.+..++++  ..     .-.+..-+.+|.++...+.+++.|+.|+
T Consensus       188 ~~G~llmf~G~~~~~~~l~~l~~~~P~--lg-----~l~~~~~~~~~~~~s~~lsl~~Ia~aW~  244 (248)
T PF07787_consen  188 FIGWLLMFIGFFLLFSPLYTLVDWIPL--LG-----NLVGFGLFLVAFIISFSLSLLTIALAWL  244 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhce--ee-----chhhhHHHHHHHHHHHHHHHHHHHHhhe
Confidence            56999999998884  44444455554  11     2445556666666666666667777664

The region in question is approximately 250 residues long.

>KOG3402 consensus Predicted membrane protein [Function unknown]

Probab=80.76  E-value=2.7  Score=31.81  Aligned_cols=48  Identities=31%  Similarity=0.697  Sum_probs=32.0

Q ss_pred             HHHHHHHH-hHHHHHHHHHhhcc--cccCCc--cc-chhHHHHHHHHHHHHHHH
Q 032649           80 SFLLGFVF-PLMWYYGTFLYFGN--HCRKDP--RE-RAGLAASAIAAMACSVVM  127 (136)
Q Consensus        80 lFllGFf~-~ipWYvgafl~~~~--~~r~Dp--RE-rpGl~AcaIAa~v~tia~  127 (136)
                      -+++||-| |..|.+-.|-++--  +.+..|  |. |.=.++|+|+.++.+|++
T Consensus        18 yyl~GfafLP~lW~VN~FwFf~~af~~pa~~~r~QIr~YVvrSavGf~fw~ivL   71 (101)
T KOG3402|consen   18 YYLFGFAFLPWLWFVNCFWFFPVAFHSPAFPHRRQIRNYVVRSAVGFSFWTIVL   71 (101)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            37889977 89999999987631  333344  12 233468888888777765

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00