Query 032650
Match_columns 136
No_of_seqs 118 out of 1519
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 04:11:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158 Cytochrome P450 CYP3/C 100.0 4.9E-32 1.1E-36 209.4 12.2 126 3-133 373-499 (499)
2 KOG0156 Cytochrome P450 CYP2 s 100.0 2.7E-31 5.8E-36 206.3 11.9 124 1-132 364-487 (489)
3 PLN02183 ferulate 5-hydroxylas 100.0 4.5E-31 9.7E-36 206.8 12.4 130 3-134 383-513 (516)
4 PLN03234 cytochrome P450 83B1; 100.0 6.3E-31 1.4E-35 205.0 12.8 128 3-132 368-498 (499)
5 KOG0157 Cytochrome P450 CYP4/C 100.0 3.5E-31 7.6E-36 206.7 10.8 125 2-133 370-496 (497)
6 PLN02966 cytochrome P450 83A1 100.0 5.4E-31 1.2E-35 205.7 11.8 130 3-136 371-501 (502)
7 PLN02687 flavonoid 3'-monooxyg 100.0 2E-30 4.4E-35 203.1 13.0 130 2-133 376-509 (517)
8 PLN02394 trans-cinnamate 4-mon 100.0 3E-30 6.4E-35 201.4 12.7 128 3-133 373-502 (503)
9 PTZ00404 cytochrome P450; Prov 100.0 3.5E-30 7.6E-35 200.1 12.7 120 2-132 362-482 (482)
10 PLN00168 Cytochrome P450; Prov 100.0 2.5E-30 5.4E-35 202.7 11.9 128 2-134 386-518 (519)
11 PF00067 p450: Cytochrome P450 100.0 2E-30 4.4E-35 196.7 10.9 102 2-103 341-442 (463)
12 PLN00110 flavonoid 3',5'-hydro 100.0 3.7E-30 8.1E-35 201.2 12.6 127 2-133 368-497 (504)
13 PLN02169 fatty acid (omega-1)- 100.0 6E-30 1.3E-34 199.9 12.0 123 3-132 374-499 (500)
14 PLN03112 cytochrome P450 famil 100.0 9.3E-30 2E-34 199.1 13.1 132 2-135 375-510 (514)
15 PLN02971 tryptophan N-hydroxyl 100.0 7.2E-30 1.6E-34 201.1 12.3 126 2-132 406-533 (543)
16 PLN02290 cytokinin trans-hydro 100.0 9.7E-30 2.1E-34 199.1 12.4 121 3-133 394-515 (516)
17 PLN02500 cytochrome P450 90B1 100.0 8.1E-30 1.7E-34 198.5 11.5 120 3-131 363-488 (490)
18 PLN02738 carotene beta-ring hy 100.0 1.5E-29 3.2E-34 202.1 13.3 127 3-135 469-597 (633)
19 PLN02655 ent-kaurene oxidase 100.0 1.8E-29 4E-34 195.5 12.0 125 3-134 341-465 (466)
20 PLN03195 fatty acid omega-hydr 100.0 1.9E-29 4.2E-34 197.4 10.5 123 4-133 392-516 (516)
21 PLN03141 3-epi-6-deoxocathaste 100.0 2.9E-29 6.2E-34 193.8 11.3 119 2-134 333-451 (452)
22 PLN02774 brassinosteroid-6-oxi 100.0 3.5E-29 7.5E-34 193.9 11.5 118 2-131 345-462 (463)
23 PLN03018 homomethionine N-hydr 100.0 6.7E-29 1.5E-33 195.3 13.1 126 3-133 394-524 (534)
24 PLN02426 cytochrome P450, fami 100.0 4.6E-29 9.9E-34 195.1 11.8 127 3-134 373-501 (502)
25 PLN02302 ent-kaurenoic acid ox 100.0 1.2E-28 2.5E-33 191.6 11.5 120 3-134 370-489 (490)
26 PLN02936 epsilon-ring hydroxyl 100.0 2.6E-28 5.6E-33 190.2 11.9 126 3-135 357-484 (489)
27 PLN02987 Cytochrome P450, fami 100.0 3.3E-28 7.3E-33 189.0 12.2 123 2-134 348-470 (472)
28 PLN02196 abscisic acid 8'-hydr 100.0 2E-28 4.4E-33 189.7 10.6 117 3-132 346-462 (463)
29 KOG0159 Cytochrome P450 CYP11/ 100.0 1.9E-28 4.1E-33 187.7 10.1 124 2-133 395-518 (519)
30 KOG0684 Cytochrome P450 [Secon 99.9 2.8E-26 6E-31 173.1 9.0 126 2-133 352-485 (486)
31 COG2124 CypX Cytochrome P450 [ 99.9 1E-24 2.2E-29 167.0 10.0 89 3-101 299-387 (411)
32 PLN02648 allene oxide synthase 99.9 4.4E-23 9.6E-28 160.6 9.7 97 3-102 353-463 (480)
33 PF12508 DUF3714: Protein of u 76.2 3.4 7.4E-05 29.1 3.0 21 6-26 74-94 (200)
34 PF11138 DUF2911: Protein of u 74.7 6.7 0.00014 26.2 4.0 23 7-29 52-74 (145)
35 PF09201 SRX: SRX; InterPro: 61.9 8 0.00017 25.6 2.2 22 72-93 19-40 (148)
36 PF08492 SRP72: SRP72 RNA-bind 61.7 6.4 0.00014 22.1 1.6 7 45-51 44-50 (59)
37 TIGR03779 Bac_Flav_CT_M Bacter 49.2 19 0.00041 28.3 2.8 22 6-27 277-298 (410)
38 PF14550 Peptidase_U35_2: Puta 45.8 16 0.00034 23.7 1.6 31 6-39 72-102 (122)
39 cd04516 TBP_eukaryotes eukaryo 43.2 22 0.00047 24.5 2.1 56 42-98 29-87 (174)
40 cd00652 TBP_TLF TATA box bindi 41.9 27 0.00058 24.0 2.4 56 42-98 29-87 (174)
41 cd04518 TBP_archaea archaeal T 40.2 9.3 0.0002 26.3 -0.0 56 42-98 29-87 (174)
42 KOG3302 TATA-box binding prote 40.1 11 0.00023 26.5 0.3 36 41-76 49-84 (200)
43 PF11227 DUF3025: Protein of u 34.9 24 0.00051 25.2 1.3 19 30-48 193-211 (212)
44 PRK00394 transcription factor; 33.7 15 0.00032 25.4 0.1 35 42-76 28-62 (179)
45 PF02663 FmdE: FmdE, Molybdenu 31.3 47 0.001 21.4 2.2 22 70-91 4-25 (131)
46 PLN00062 TATA-box-binding prot 29.1 17 0.00036 25.2 -0.2 55 42-96 29-85 (179)
47 PRK14759 potassium-transportin 28.4 24 0.00053 16.7 0.4 6 44-49 24-29 (29)
48 COG2101 SPT15 TATA-box binding 27.6 24 0.00052 24.4 0.3 36 42-77 35-70 (185)
49 PF00352 TBP: Transcription fa 25.8 11 0.00025 22.4 -1.3 35 42-76 31-65 (86)
50 PF01629 DUF22: Domain of unkn 25.5 66 0.0014 20.5 2.0 32 6-37 42-83 (112)
51 PF12444 Sox_N: Sox developmen 23.5 54 0.0012 19.8 1.3 20 82-101 61-80 (84)
52 PHA03162 hypothetical protein; 21.8 71 0.0015 21.0 1.7 24 67-90 2-25 (135)
53 PF02311 AraC_binding: AraC-li 20.7 1.1E+02 0.0023 18.6 2.4 23 11-33 36-60 (136)
54 KOG2376 Signal recognition par 20.7 65 0.0014 26.7 1.6 37 33-74 570-606 (652)
No 1
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=4.9e-32 Score=209.42 Aligned_cols=126 Identities=27% Similarity=0.438 Sum_probs=109.6
Q ss_pred cceeecCCeEEc-CEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHHH
Q 032650 3 LPRQTISHCKIN-GYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGIS 81 (136)
Q Consensus 3 i~R~~~~d~~l~-g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~ 81 (136)
+.|++++|+++. ++.|++|+.|+++.+++||||++|+||++|+||||+.++.. ...+..|+|||.|+|+|+|++||++
T Consensus 373 ~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~m 451 (499)
T KOG0158|consen 373 LNRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNK-SRHPGAYLPFGVGPRNCIGMRFALM 451 (499)
T ss_pred ccceecCceecCCCeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCccc-ccCCccccCCCCCccccHHHHHHHH
Confidence 579999999999 99999999999999999999999999999999999976543 4467789999999999999999999
Q ss_pred HHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCC
Q 032650 82 TVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYS 133 (136)
Q Consensus 82 ~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 133 (136)
|+|++|+.||++|+++..+.+. .. ......+ .++.|.+++++++.+|.
T Consensus 452 q~K~~L~~lL~~f~~~~~~~t~-~~-~~~~~~~--~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 452 EAKLALAHLLRNFSFEVCPTTI-IP-LEGDPKG--FTLSPKGGIWLKLEPRD 499 (499)
T ss_pred HHHHHHHHHHhhCEEecCCccc-Cc-ccCCccc--eeeecCCceEEEEEeCC
Confidence 9999999999999999988332 22 2222225 78899999999999884
No 2
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.7e-31 Score=206.29 Aligned_cols=124 Identities=53% Similarity=0.965 Sum_probs=105.4
Q ss_pred CCcceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHH
Q 032650 1 MLLPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGI 80 (136)
Q Consensus 1 ~~i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~ 80 (136)
+.+||.+++|++|+||.||+||.|+++.|++|+||++|+||++|+||||++++ +.++....++|||.|+|.|+|+.+|.
T Consensus 364 l~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~-d~~~~~~~~iPFG~GRR~CpG~~La~ 442 (489)
T KOG0156|consen 364 LLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSN-DGKGLDFKLIPFGSGRRICPGEGLAR 442 (489)
T ss_pred ccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCc-cccCCceEecCCCCCcCCCCcHHHHH
Confidence 46899999999999999999999999999999999999999999999999975 33446778999999999999999999
Q ss_pred HHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecC
Q 032650 81 STVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINY 132 (136)
Q Consensus 81 ~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 132 (136)
+++.++++.|+++|+|++..+ .++.... + .++....++.+...+|
T Consensus 443 ~~l~l~la~llq~F~w~~~~~----~~d~~e~-~--~~~~~~~pl~~~~~~r 487 (489)
T KOG0156|consen 443 AELFLFLANLLQRFDWKLPGG----KVDMEEA-G--LTLKKKKPLKAVPVPR 487 (489)
T ss_pred HHHHHHHHHHHheeeeecCCC----CCCCccc-c--cceecCCcceeeeecC
Confidence 999999999999999999877 2334333 3 4445555666665555
No 3
>PLN02183 ferulate 5-hydroxylase
Probab=99.97 E-value=4.5e-31 Score=206.77 Aligned_cols=130 Identities=40% Similarity=0.855 Sum_probs=107.8
Q ss_pred cceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcC-CCCCccceeecCCCCCCCcChHHHHH
Q 032650 3 LPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVD-FKGQNFELLPFGGGRRICPGIQMGIS 81 (136)
Q Consensus 3 i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~-~~~~~~~~~~fg~G~r~C~G~~~a~~ 81 (136)
+.|.+.+|++++||.|||||.|.++.|++|+||++|+||++|+||||++++.. .....+.++|||.|+|.|+|+++|++
T Consensus 383 ~~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~ 462 (516)
T PLN02183 383 LLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLY 462 (516)
T ss_pred eeeeccCceeECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHH
Confidence 46899999999999999999999999999999999999999999999975432 12345679999999999999999999
Q ss_pred HHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCCC
Q 032650 82 TVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYSH 134 (136)
Q Consensus 82 ~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 134 (136)
|+++++|.|+++|++++.++.....+.....++ .+.++..++.+.+++|..
T Consensus 463 e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~ 513 (516)
T PLN02183 463 ALDLAVAHLLHCFTWELPDGMKPSELDMNDVFG--LTAPRATRLVAVPTYRLQ 513 (516)
T ss_pred HHHHHHHHHHheeEEEcCCCCCCCCCChhhccc--cccccCCCcEEEeecCCC
Confidence 999999999999999997765433344444445 444556688888888853
No 4
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.97 E-value=6.3e-31 Score=204.97 Aligned_cols=128 Identities=48% Similarity=0.996 Sum_probs=108.6
Q ss_pred cceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCC-CCCCCccCCCcCCCCcC--CCCCccceeecCCCCCCCcChHHH
Q 032650 3 LPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYW-SKAEEFFPERFIDNSVD--FKGQNFELLPFGGGRRICPGIQMG 79 (136)
Q Consensus 3 i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~~~~~--~~~~~~~~~~fg~G~r~C~G~~~a 79 (136)
++|.+.+|++++||.||+||.|.++.|.+|+||++| +||++|+||||+++... ....+..++|||.|+|.|+|+++|
T Consensus 368 ~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A 447 (499)
T PLN03234 368 LHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLG 447 (499)
T ss_pred CCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHH
Confidence 479999999999999999999999999999999999 79999999999875422 223466799999999999999999
Q ss_pred HHHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecC
Q 032650 80 ISTVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINY 132 (136)
Q Consensus 80 ~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 132 (136)
+++++++++.|+++|++++.++..++.+......+ +.+.++..+.+.+++|
T Consensus 448 ~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 448 IAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTG--LAMHKKEHLVLAPTKH 498 (499)
T ss_pred HHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccc--cccccCCCeEEEeecC
Confidence 99999999999999999998775444444444556 6777887888887776
No 5
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.97 E-value=3.5e-31 Score=206.74 Aligned_cols=125 Identities=29% Similarity=0.507 Sum_probs=110.2
Q ss_pred CcceeecCCeEE-cCEEeCCCCEEEEeehhhccCCCCCC-CCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHH
Q 032650 2 LLPRQTISHCKI-NGYDVYPETLLQVNVWAIGRDSRYWS-KAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMG 79 (136)
Q Consensus 2 ~i~R~~~~d~~l-~g~~ip~g~~v~~~~~~~~~d~~~~~-~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a 79 (136)
.+.|.+.+|++| +||.||||+.|+++.|++|||+.+|+ ||++|+|+||+++......+++.|+|||+|+|.|+|++||
T Consensus 370 ~~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA 449 (497)
T KOG0157|consen 370 LVARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFA 449 (497)
T ss_pred hhhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHH
Confidence 367999999999 58999999999999999999999997 9999999999975434345678999999999999999999
Q ss_pred HHHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCC
Q 032650 80 ISTVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYS 133 (136)
Q Consensus 80 ~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 133 (136)
++|++++++.|+++|+|++..+.. ...... +++++..+++|++++|.
T Consensus 450 ~lemKv~l~~ll~~f~~~~~~~~~-----~~~~~~--~~l~~~~gl~v~~~~r~ 496 (497)
T KOG0157|consen 450 MLEMKVVLAHLLRRFRIEPVGGDK-----PKPVPE--LTLRPKNGLKVKLRPRG 496 (497)
T ss_pred HHHHHHHHHHHHHheEEEecCCCC-----ceeeeE--EEEEecCCeEEEEEeCC
Confidence 999999999999999999887642 223344 78899999999999986
No 6
>PLN02966 cytochrome P450 83A1
Probab=99.97 E-value=5.4e-31 Score=205.65 Aligned_cols=130 Identities=45% Similarity=0.901 Sum_probs=106.1
Q ss_pred cceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCC-CCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHHH
Q 032650 3 LPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYW-SKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGIS 81 (136)
Q Consensus 3 i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~ 81 (136)
++|.+.+|++++||.||+||.|.++.|++||||++| +||++|+||||++++......+..++|||.|+|.|+|++||.+
T Consensus 371 ~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~ 450 (502)
T PLN02966 371 IPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAA 450 (502)
T ss_pred cCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHH
Confidence 579999999999999999999999999999999999 9999999999987543322345679999999999999999999
Q ss_pred HHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCCCCC
Q 032650 82 TVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYSHPK 136 (136)
Q Consensus 82 ~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~~ 136 (136)
|++++++.|+++|++++.++...+.++.....+ +...+.. .+++++|+.+|
T Consensus 451 el~~~la~ll~~f~i~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~ 501 (502)
T PLN02966 451 MLEVPYANLLLNFNFKLPNGMKPDDINMDVMTG--LAMHKSQ--HLKLVPEKVNK 501 (502)
T ss_pred HHHHHHHHHHHhceeeCCCCCCcccCCcccccC--eeeccCC--CeEEEEEeCCC
Confidence 999999999999999998776444444444445 5543433 44566666554
No 7
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.97 E-value=2e-30 Score=203.12 Aligned_cols=130 Identities=45% Similarity=0.843 Sum_probs=108.2
Q ss_pred CcceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcC----CCCCccceeecCCCCCCCcChH
Q 032650 2 LLPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVD----FKGQNFELLPFGGGRRICPGIQ 77 (136)
Q Consensus 2 ~i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~----~~~~~~~~~~fg~G~r~C~G~~ 77 (136)
+++|.+.+|++++||.||+|+.|.++.|++|+||++|+||++|+||||+++... ....+..++|||.|+|.|+|++
T Consensus 376 ~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~ 455 (517)
T PLN02687 376 SLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLS 455 (517)
T ss_pred cccccCCCCeeECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChH
Confidence 468999999999999999999999999999999999999999999999874321 1224557899999999999999
Q ss_pred HHHHHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCC
Q 032650 78 MGISTVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYS 133 (136)
Q Consensus 78 ~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 133 (136)
||++|++++++.|+++|++++.++.....++...... +.+.+..++.+++++|.
T Consensus 456 ~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~R~ 509 (517)
T PLN02687 456 WGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYG--LTLQRAVPLMVHPRPRL 509 (517)
T ss_pred HHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccc--eeeecCCCeEEeeccCC
Confidence 9999999999999999999998764322333333334 55566778999999985
No 8
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.97 E-value=3e-30 Score=201.36 Aligned_cols=128 Identities=31% Similarity=0.649 Sum_probs=105.0
Q ss_pred cceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcC--CCCCccceeecCCCCCCCcChHHHH
Q 032650 3 LPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVD--FKGQNFELLPFGGGRRICPGIQMGI 80 (136)
Q Consensus 3 i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~--~~~~~~~~~~fg~G~r~C~G~~~a~ 80 (136)
++|.+.+|++++||.||+||.|.++.|++|+||++|+||++|+||||++++.. .......++|||.|+|.|+|++||+
T Consensus 373 ~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~ 452 (503)
T PLN02394 373 VPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILAL 452 (503)
T ss_pred cceecCCCcccCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHH
Confidence 47889999999999999999999999999999999999999999999865321 1224567999999999999999999
Q ss_pred HHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCC
Q 032650 81 STVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYS 133 (136)
Q Consensus 81 ~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 133 (136)
+|++++++.|+++|++++.++.+ .++....++. +.+..+.+..+++.+|+
T Consensus 453 ~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~r~ 502 (503)
T PLN02394 453 PILGIVLGRLVQNFELLPPPGQS--KIDVSEKGGQ-FSLHIAKHSTVVFKPRS 502 (503)
T ss_pred HHHHHHHHHHHHHceeEeCCCCC--cCccccccCc-eeeccCCCceEEeecCC
Confidence 99999999999999999877642 2333333321 44434558888899886
No 9
>PTZ00404 cytochrome P450; Provisional
Probab=99.97 E-value=3.5e-30 Score=200.06 Aligned_cols=120 Identities=28% Similarity=0.505 Sum_probs=101.5
Q ss_pred CcceeecCCeEE-cCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHH
Q 032650 2 LLPRQTISHCKI-NGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGI 80 (136)
Q Consensus 2 ~i~R~~~~d~~l-~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~ 80 (136)
+++|.+.+|+++ +||.||+|+.|.++.+++|+||++|+||++|+||||++.. ....++|||.|+|.|+|++||+
T Consensus 362 ~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~-----~~~~~~pFg~G~R~C~G~~~A~ 436 (482)
T PTZ00404 362 GLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD-----SNDAFMPFSIGPRNCVGQQFAQ 436 (482)
T ss_pred ccceeccCCEEecCCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC-----CCCceeccCCCCCCCccHHHHH
Confidence 368999999999 9999999999999999999999999999999999998642 3457999999999999999999
Q ss_pred HHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecC
Q 032650 81 STVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINY 132 (136)
Q Consensus 81 ~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 132 (136)
+|++++++.|+++|++++.+++. .+.....+ +++. +.++.+.+++|
T Consensus 437 ~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~--~~~~-~~~~~v~~~~R 482 (482)
T PTZ00404 437 DELYLAFSNIILNFKLKSIDGKK---IDETEEYG--LTLK-PNKFKVLLEKR 482 (482)
T ss_pred HHHHHHHHHHHHhcEEecCCCCC---CCcccccc--eeec-CCCceeeeecC
Confidence 99999999999999999876532 11222334 5555 45788888876
No 10
>PLN00168 Cytochrome P450; Provisional
Probab=99.97 E-value=2.5e-30 Score=202.68 Aligned_cols=128 Identities=29% Similarity=0.573 Sum_probs=105.7
Q ss_pred CcceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcC-----CCCCccceeecCCCCCCCcCh
Q 032650 2 LLPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVD-----FKGQNFELLPFGGGRRICPGI 76 (136)
Q Consensus 2 ~i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~-----~~~~~~~~~~fg~G~r~C~G~ 76 (136)
+++|.+.+|++++||.||+|+.|.++.+++|+||++|+||++|+||||++.... ....++.++|||.|+|.|+|+
T Consensus 386 ~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~ 465 (519)
T PLN00168 386 VLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGL 465 (519)
T ss_pred cCCccCCCCccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcH
Confidence 358999999999999999999999999999999999999999999999864211 112345799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCCC
Q 032650 77 QMGISTVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYSH 134 (136)
Q Consensus 77 ~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 134 (136)
+||++|++++++.|+++|+|++.++.. ++.....+ +++.+..++.+++++|..
T Consensus 466 ~lA~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~R~~ 518 (519)
T PLN00168 466 GIAMLHLEYFVANMVREFEWKEVPGDE---VDFAEKRE--FTTVMAKPLRARLVPRRT 518 (519)
T ss_pred HHHHHHHHHHHHHHHHHccceeCCCCc---CChhhhce--eEEeecCCcEEEEEeccC
Confidence 999999999999999999999976532 22222233 455666689999999875
No 11
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.97 E-value=2e-30 Score=196.67 Aligned_cols=102 Identities=34% Similarity=0.698 Sum_probs=90.6
Q ss_pred CcceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHHH
Q 032650 2 LLPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGIS 81 (136)
Q Consensus 2 ~i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~ 81 (136)
+++|.+.+|++++||.||+|+.|.++.+++|+|+++|+||++|+|+||++.+.........++|||.|+|.|+|+++|++
T Consensus 341 ~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~ 420 (463)
T PF00067_consen 341 SLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMM 420 (463)
T ss_dssp EEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchHHHHHHH
Confidence 57899999999999999999999999999999999999999999999998765233466789999999999999999999
Q ss_pred HHHHHHHHHHHhceeecCCCCC
Q 032650 82 TVELALTNLLYHFNWKLPNGME 103 (136)
Q Consensus 82 ~~~~~l~~ll~~f~~~~~~~~~ 103 (136)
+++++++.|+++|+|++.++..
T Consensus 421 ~~~~~la~ll~~f~~~~~~~~~ 442 (463)
T PF00067_consen 421 EMKVFLAKLLRRFDFELVPGSE 442 (463)
T ss_dssp HHHHHHHHHHHHEEEEESTTSS
T ss_pred HHHHHHHHHHHhCEEEECCCCC
Confidence 9999999999999999976643
No 12
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.97 E-value=3.7e-30 Score=201.21 Aligned_cols=127 Identities=49% Similarity=0.914 Sum_probs=107.1
Q ss_pred CcceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCC---CCCccceeecCCCCCCCcChHH
Q 032650 2 LLPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDF---KGQNFELLPFGGGRRICPGIQM 78 (136)
Q Consensus 2 ~i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~---~~~~~~~~~fg~G~r~C~G~~~ 78 (136)
+++|.+.+|++++||.||+|+.|.++.+++|+||++|+||++|+||||+++.... ......++|||.|+|.|+|++|
T Consensus 368 ~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~ 447 (504)
T PLN00110 368 NLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRM 447 (504)
T ss_pred ccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHH
Confidence 4689999999999999999999999999999999999999999999998643211 1123579999999999999999
Q ss_pred HHHHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCC
Q 032650 79 GISTVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYS 133 (136)
Q Consensus 79 a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 133 (136)
|++|++++++.|+++|++++.++.. +......+ +++.|..++.+.+++|.
T Consensus 448 A~~e~~~~la~ll~~f~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~r~ 497 (504)
T PLN00110 448 GIVLVEYILGTLVHSFDWKLPDGVE---LNMDEAFG--LALQKAVPLSAMVTPRL 497 (504)
T ss_pred HHHHHHHHHHHHHHhceeecCCCCc---cCcccccc--cccccCCCceEeeccCC
Confidence 9999999999999999999876532 22223345 67788889999999985
No 13
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.97 E-value=6e-30 Score=199.90 Aligned_cols=123 Identities=19% Similarity=0.412 Sum_probs=101.9
Q ss_pred cceeecCCeE-EcCEEeCCCCEEEEeehhhccCCCCC-CCCCCccCCCcCCCCcCCC-CCccceeecCCCCCCCcChHHH
Q 032650 3 LPRQTISHCK-INGYDVYPETLLQVNVWAIGRDSRYW-SKAEEFFPERFIDNSVDFK-GQNFELLPFGGGRRICPGIQMG 79 (136)
Q Consensus 3 i~R~~~~d~~-l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~~~~~~~-~~~~~~~~fg~G~r~C~G~~~a 79 (136)
+.|.+.+|.+ ++||.||+|+.|.++.|++||||++| +||++|+||||++++.... ..++.++|||+|+|.|+|++||
T Consensus 374 ~~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A 453 (500)
T PLN02169 374 NHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLA 453 (500)
T ss_pred CceecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHH
Confidence 4566665555 59999999999999999999999999 8999999999996543221 2367899999999999999999
Q ss_pred HHHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecC
Q 032650 80 ISTVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINY 132 (136)
Q Consensus 80 ~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 132 (136)
++|++++++.|+++|++++.++.. + ..... +++.|+.++.+++++|
T Consensus 454 ~~e~k~~la~ll~~f~~~~~~~~~---~--~~~~~--~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 454 LLQMKIVALEIIKNYDFKVIEGHK---I--EAIPS--ILLRMKHGLKVTVTKK 499 (500)
T ss_pred HHHHHHHHHHHHHHCEEEEcCCCC---c--ccccc--eEEecCCCEEEEEEeC
Confidence 999999999999999999875432 1 22334 6778999999999887
No 14
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.97 E-value=9.3e-30 Score=199.10 Aligned_cols=132 Identities=34% Similarity=0.716 Sum_probs=109.1
Q ss_pred CcceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCC----CCCccceeecCCCCCCCcChH
Q 032650 2 LLPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDF----KGQNFELLPFGGGRRICPGIQ 77 (136)
Q Consensus 2 ~i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~----~~~~~~~~~fg~G~r~C~G~~ 77 (136)
+++|.+.+|++++||.||+|+.|.++.|++|+||++|+||++|+|+||..+.... ......++|||.|+|.|+|++
T Consensus 375 ~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~ 454 (514)
T PLN03112 375 LIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAP 454 (514)
T ss_pred ccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHH
Confidence 4689999999999999999999999999999999999999999999986532111 123457999999999999999
Q ss_pred HHHHHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCCCC
Q 032650 78 MGISTVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYSHP 135 (136)
Q Consensus 78 ~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~ 135 (136)
||+++++++++.|+++|++++..+...+.+.....++ +.+++..++.+++.+|..+
T Consensus 455 ~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~r~~~ 510 (514)
T PLN03112 455 LGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYG--MTMPKAKPLRAVATPRLAP 510 (514)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccC--cccccCCCeEEEeecCCcc
Confidence 9999999999999999999987654333333333445 6667778999999999754
No 15
>PLN02971 tryptophan N-hydroxylase
Probab=99.97 E-value=7.2e-30 Score=201.12 Aligned_cols=126 Identities=24% Similarity=0.526 Sum_probs=102.0
Q ss_pred CcceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcC--CCCCccceeecCCCCCCCcChHHH
Q 032650 2 LLPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVD--FKGQNFELLPFGGGRRICPGIQMG 79 (136)
Q Consensus 2 ~i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~--~~~~~~~~~~fg~G~r~C~G~~~a 79 (136)
.++|.+.+|++++||.||||+.|+++.|++|+||++|+||++|+||||+++... ....+..++|||.|+|.|+|++||
T Consensus 406 ~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA 485 (543)
T PLN02971 406 NLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALG 485 (543)
T ss_pred CcceecCCCeeECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHH
Confidence 468999999999999999999999999999999999999999999999975322 122456799999999999999999
Q ss_pred HHHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecC
Q 032650 80 ISTVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINY 132 (136)
Q Consensus 80 ~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 132 (136)
+.|++++++.|+++|++++.++.. .++....++ ++... .++.+.+++|
T Consensus 486 ~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~-~~~~~--~~~~~~~~~~ 533 (543)
T PLN02971 486 TAITTMMLARLLQGFKWKLAGSET--RVELMESSH-DMFLS--KPLVMVGELR 533 (543)
T ss_pred HHHHHHHHHHHHHhCEEEeCCCCC--CcchhhhcC-ccccc--ccceeeeeec
Confidence 999999999999999999876543 233333333 23233 3566777666
No 16
>PLN02290 cytokinin trans-hydroxylase
Probab=99.96 E-value=9.7e-30 Score=199.08 Aligned_cols=121 Identities=21% Similarity=0.416 Sum_probs=104.4
Q ss_pred cceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCC-CCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHHH
Q 032650 3 LPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYW-SKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGIS 81 (136)
Q Consensus 3 i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~ 81 (136)
++|.+.+|++++||.||+||.|.++.|++|+||++| +||++|+||||+++.. .....++|||.|+|.|+|+++|++
T Consensus 394 ~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~---~~~~~~~pFG~G~R~C~G~~lA~~ 470 (516)
T PLN02290 394 LPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF---APGRHFIPFAAGPRNCIGQAFAMM 470 (516)
T ss_pred cceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC---CCCCeEecCCCCCCCCccHHHHHH
Confidence 689999999999999999999999999999999999 7999999999995421 123468999999999999999999
Q ss_pred HHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCC
Q 032650 82 TVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYS 133 (136)
Q Consensus 82 ~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 133 (136)
|++++++.|+++|++++.++.. ...... +++.|..++.+++++|.
T Consensus 471 el~l~la~ll~~f~~~~~~~~~-----~~~~~~--~~~~p~~~~~~~~~~~~ 515 (516)
T PLN02290 471 EAKIILAMLISKFSFTISDNYR-----HAPVVV--LTIKPKYGVQVCLKPLN 515 (516)
T ss_pred HHHHHHHHHHHhceEeeCCCcc-----cCccce--eeecCCCCCeEEEEeCC
Confidence 9999999999999999876532 111123 67889999999999886
No 17
>PLN02500 cytochrome P450 90B1
Probab=99.96 E-value=8.1e-30 Score=198.52 Aligned_cols=120 Identities=23% Similarity=0.425 Sum_probs=99.3
Q ss_pred cceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCC------CCccceeecCCCCCCCcCh
Q 032650 3 LPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFK------GQNFELLPFGGGRRICPGI 76 (136)
Q Consensus 3 i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~------~~~~~~~~fg~G~r~C~G~ 76 (136)
++|.+.+|++++||.||||+.|.++.|++|+||++|+||++|+||||++++.... ..+..++|||.|+|.|+|+
T Consensus 363 ~~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~ 442 (490)
T PLN02500 363 LHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGS 442 (490)
T ss_pred eeeEeCCCceeCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcH
Confidence 5799999999999999999999999999999999999999999999986532111 2456799999999999999
Q ss_pred HHHHHHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeec
Q 032650 77 QMGISTVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPIN 131 (136)
Q Consensus 77 ~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 131 (136)
++|++|++++++.|+++|+|++.++... . ... .. .+..++.|++++
T Consensus 443 ~~A~~el~~~la~ll~~f~~~~~~~~~~----~--~~~--~~-~~~~~l~~~~~~ 488 (490)
T PLN02500 443 ELAKLEMAVFIHHLVLNFNWELAEADQA----F--AFP--FV-DFPKGLPIRVRR 488 (490)
T ss_pred HHHHHHHHHHHHHHHhccEEEEcCCCcc----e--ecc--cc-cCCCCceEEEEe
Confidence 9999999999999999999998765421 1 111 22 334588888765
No 18
>PLN02738 carotene beta-ring hydroxylase
Probab=99.96 E-value=1.5e-29 Score=202.13 Aligned_cols=127 Identities=28% Similarity=0.508 Sum_probs=106.5
Q ss_pred cceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCc--CCCCCccceeecCCCCCCCcChHHHH
Q 032650 3 LPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSV--DFKGQNFELLPFGGGRRICPGIQMGI 80 (136)
Q Consensus 3 i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~--~~~~~~~~~~~fg~G~r~C~G~~~a~ 80 (136)
++|.+.+|.+++||.||+||.|.++.|.+|+||++|+||++|+||||+.+.. .....+..++|||.|+|.|+|++||+
T Consensus 469 ~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~ 548 (633)
T PLN02738 469 LIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFAS 548 (633)
T ss_pred cceeeccCceECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHH
Confidence 5688999999999999999999999999999999999999999999985321 12234567999999999999999999
Q ss_pred HHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCCCC
Q 032650 81 STVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYSHP 135 (136)
Q Consensus 81 ~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~ 135 (136)
+|++++++.|+++|+|++..+.. . .....+ .++.+..++++++++|..+
T Consensus 549 ~El~l~LA~Llr~F~~el~~~~~--~--~~~~~~--~~~~p~~~l~v~l~~R~~~ 597 (633)
T PLN02738 549 FENVVATAMLVRRFDFQLAPGAP--P--VKMTTG--ATIHTTEGLKMTVTRRTKP 597 (633)
T ss_pred HHHHHHHHHHHHhCeeEeCCCCC--C--cccccc--eEEeeCCCcEEEEEECCCC
Confidence 99999999999999999976642 1 222234 5677788999999999743
No 19
>PLN02655 ent-kaurene oxidase
Probab=99.96 E-value=1.8e-29 Score=195.52 Aligned_cols=125 Identities=28% Similarity=0.574 Sum_probs=106.9
Q ss_pred cceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHHHH
Q 032650 3 LPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGIST 82 (136)
Q Consensus 3 i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~~ 82 (136)
++|.+.+|++++||.||||+.|+++.+++|+|+++|+||++|+|+||+++... ......++|||.|+|.|+|++||..+
T Consensus 341 ~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~-~~~~~~~~~Fg~G~r~C~G~~~A~~~ 419 (466)
T PLN02655 341 PPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYE-SADMYKTMAFGAGKRVCAGSLQAMLI 419 (466)
T ss_pred CCcccCCCcccCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCcc-cCCcccccCCCCCCCCCCcHHHHHHH
Confidence 47999999999999999999999999999999999999999999999975422 12346789999999999999999999
Q ss_pred HHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCCC
Q 032650 83 VELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYSH 134 (136)
Q Consensus 83 ~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 134 (136)
++++++.|+++|++++.++... .....+ +++.++.++.+.+++|.+
T Consensus 420 ~~~~l~~ll~~f~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~r~~ 465 (466)
T PLN02655 420 ACMAIARLVQEFEWRLREGDEE----KEDTVQ--LTTQKLHPLHAHLKPRGS 465 (466)
T ss_pred HHHHHHHHHHHeEEEeCCCCcc----ccchhh--eeEeecCCcEEEEeecCC
Confidence 9999999999999999766421 122334 677788899999998875
No 20
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.96 E-value=1.9e-29 Score=197.45 Aligned_cols=123 Identities=24% Similarity=0.383 Sum_probs=100.2
Q ss_pred ceeecCCeEE-cCEEeCCCCEEEEeehhhccCCCCC-CCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHHH
Q 032650 4 PRQTISHCKI-NGYDVYPETLLQVNVWAIGRDSRYW-SKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGIS 81 (136)
Q Consensus 4 ~R~~~~d~~l-~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~ 81 (136)
+|.+.+|.++ +|+.||||+.|.++.|++|+||++| +||++|+||||++++......+..++|||.|+|.|+|++||++
T Consensus 392 ~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~ 471 (516)
T PLN03195 392 PKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYL 471 (516)
T ss_pred hhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHH
Confidence 5556666555 9999999999999999999999999 9999999999996432122345579999999999999999999
Q ss_pred HHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCC
Q 032650 82 TVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYS 133 (136)
Q Consensus 82 ~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 133 (136)
|++++++.|+++|++++.++.. . ..... .++.|..++.|++++|.
T Consensus 472 e~~~~la~ll~~f~~~~~~~~~---~--~~~~~--~~~~~~~~~~v~~~~r~ 516 (516)
T PLN03195 472 QMKMALALLCRFFKFQLVPGHP---V--KYRMM--TILSMANGLKVTVSRRS 516 (516)
T ss_pred HHHHHHHHHHHhceeEecCCCc---c--eeeee--eEEecCCCEEEEEEeCC
Confidence 9999999999999999875431 1 11222 45678889999998874
No 21
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.96 E-value=2.9e-29 Score=193.75 Aligned_cols=119 Identities=21% Similarity=0.381 Sum_probs=103.9
Q ss_pred CcceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHHH
Q 032650 2 LLPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGIS 81 (136)
Q Consensus 2 ~i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~ 81 (136)
+++|.+.+|++++||.||+|+.|+++.+++|+|+++|+||++|+||||++++. .+..++|||+|+|.|+|++||++
T Consensus 333 ~~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~----~~~~~~pFG~G~R~C~G~~lA~~ 408 (452)
T PLN03141 333 GVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM----NNSSFTPFGGGQRLCPGLDLARL 408 (452)
T ss_pred CcceeecCCeeECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCCC----CCCCCCCCCCCCCCCChHHHHHH
Confidence 46899999999999999999999999999999999999999999999997531 34579999999999999999999
Q ss_pred HHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCCC
Q 032650 82 TVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYSH 134 (136)
Q Consensus 82 ~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 134 (136)
|++++++.|+++|++++.++.. . .. .++.|..++.+++.+|-.
T Consensus 409 el~~~la~ll~~f~~~~~~~~~---~-----~~--~~~~~~~~~~~~~~~~~~ 451 (452)
T PLN03141 409 EASIFLHHLVTRFRWVAEEDTI---V-----NF--PTVRMKRKLPIWVTRIDD 451 (452)
T ss_pred HHHHHHHHHHhcCeeecCCCCe---e-----ec--ccccCCCCceEEEEeCCC
Confidence 9999999999999999865521 1 12 466788899999998843
No 22
>PLN02774 brassinosteroid-6-oxidase
Probab=99.96 E-value=3.5e-29 Score=193.87 Aligned_cols=118 Identities=23% Similarity=0.406 Sum_probs=99.0
Q ss_pred CcceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHHH
Q 032650 2 LLPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGIS 81 (136)
Q Consensus 2 ~i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~ 81 (136)
.++|.+.+|++++||.||||+.|+++.+++|+||++|+||++|+||||++++.. ....++|||+|+|.|+|+++|.+
T Consensus 345 ~~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~---~~~~~lpFG~G~r~C~G~~~A~~ 421 (463)
T PLN02774 345 GVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE---SHNYFFLFGGGTRLCPGKELGIV 421 (463)
T ss_pred CcccccCCCeeECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcC---CCccccCcCCCCCcCCcHHHHHH
Confidence 357999999999999999999999999999999999999999999999965421 12358999999999999999999
Q ss_pred HHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeec
Q 032650 82 TVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPIN 131 (136)
Q Consensus 82 ~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 131 (136)
|++++++.|+++|++++.++... . .. ..+.|++++++++++
T Consensus 422 e~~~~la~Ll~~f~~~~~~~~~~--~----~~---~~~~p~~g~~~~~~~ 462 (463)
T PLN02774 422 EISTFLHYFVTRYRWEEVGGDKL--M----KF---PRVEAPNGLHIRVSP 462 (463)
T ss_pred HHHHHHHHHHHhceEEECCCCcc--c----cC---CCCCCCCCceEEeee
Confidence 99999999999999999766421 1 11 233466888888764
No 23
>PLN03018 homomethionine N-hydroxylase
Probab=99.96 E-value=6.7e-29 Score=195.35 Aligned_cols=126 Identities=24% Similarity=0.418 Sum_probs=103.2
Q ss_pred cceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCC-----CCCccceeecCCCCCCCcChH
Q 032650 3 LPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDF-----KGQNFELLPFGGGRRICPGIQ 77 (136)
Q Consensus 3 i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~-----~~~~~~~~~fg~G~r~C~G~~ 77 (136)
++|.+.+|++++||.||||+.|.++.|++|+||++|+||++|+|+||++++... ...+..++|||.|+|.|+|++
T Consensus 394 ~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~ 473 (534)
T PLN03018 394 PPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVK 473 (534)
T ss_pred CCcccCCCeeECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHH
Confidence 468999999999999999999999999999999999999999999998643211 124567999999999999999
Q ss_pred HHHHHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCC
Q 032650 78 MGISTVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYS 133 (136)
Q Consensus 78 ~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 133 (136)
+|.++++++++.|+++|++++.++.. .++.....+ .+.. +.++++.+++|.
T Consensus 474 lA~~e~~~~la~ll~~f~~~~~~~~~--~~~~~~~~~--~~~~-p~~~~v~~~~R~ 524 (534)
T PLN03018 474 VGTIMMVMMLARFLQGFNWKLHQDFG--PLSLEEDDA--SLLM-AKPLLLSVEPRL 524 (534)
T ss_pred HHHHHHHHHHHHHHHhceEEeCCCCC--CCCcccccc--ceec-CCCeEEEEEecc
Confidence 99999999999999999999876532 222222223 3444 458999999984
No 24
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.96 E-value=4.6e-29 Score=195.06 Aligned_cols=127 Identities=22% Similarity=0.314 Sum_probs=105.0
Q ss_pred cceeecCCeEE-cCEEeCCCCEEEEeehhhccCCCCC-CCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHH
Q 032650 3 LPRQTISHCKI-NGYDVYPETLLQVNVWAIGRDSRYW-SKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGI 80 (136)
Q Consensus 3 i~R~~~~d~~l-~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~ 80 (136)
..|.+.+|.++ +|+.||+||.|.++.|++|||+++| +||++|+||||++++......+..++|||+|+|.|+|+++|+
T Consensus 373 ~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~ 452 (502)
T PLN02426 373 DSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMAL 452 (502)
T ss_pred cceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHH
Confidence 35788888777 9999999999999999999999999 999999999999743212234567899999999999999999
Q ss_pred HHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCCC
Q 032650 81 STVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYSH 134 (136)
Q Consensus 81 ~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 134 (136)
+|++++++.|+++|++++.++... . .....+ +++.++.++.|++++|.+
T Consensus 453 ~e~~~~la~ll~~f~~~~~~~~~~-~--~~~~~~--~~~~~~~gl~v~~~~r~~ 501 (502)
T PLN02426 453 MEMKSVAVAVVRRFDIEVVGRSNR-A--PRFAPG--LTATVRGGLPVRVRERVR 501 (502)
T ss_pred HHHHHHHHHHHHHceEEEecCCCC-C--Ccccce--eEEecCCCEEEEEEEccC
Confidence 999999999999999998644221 1 122234 678889999999999864
No 25
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.96 E-value=1.2e-28 Score=191.56 Aligned_cols=120 Identities=18% Similarity=0.286 Sum_probs=103.3
Q ss_pred cceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHHHH
Q 032650 3 LPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGIST 82 (136)
Q Consensus 3 i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~~ 82 (136)
++|.+.+|++++||.||+|+.|.++.+++|+|+++|+||++|+|+||+++. ..+..++|||.|+|.|+|+++|.+|
T Consensus 370 ~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~----~~~~~~~pFG~G~r~C~G~~lA~~e 445 (490)
T PLN02302 370 VFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT----PKAGTFLPFGLGSRLCPGNDLAKLE 445 (490)
T ss_pred chhcccCCEeECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC----CCCCCccCCCCCCcCCCcHHHHHHH
Confidence 478999999999999999999999999999999999999999999998643 2445789999999999999999999
Q ss_pred HHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCCC
Q 032650 83 VELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYSH 134 (136)
Q Consensus 83 ~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 134 (136)
++++++.|+++|++++.++.. +. ... ..+.|.+++.+++++|.+
T Consensus 446 ~~~~la~ll~~f~~~~~~~~~----~~--~~~--~~~~p~~~~~~~~~~~~~ 489 (490)
T PLN02302 446 ISIFLHHFLLGYRLERLNPGC----KV--MYL--PHPRPKDNCLARITKVAS 489 (490)
T ss_pred HHHHHHHHHhcCeeEEcCCCC----cc--eeC--CCCCCCCCceEEEEeccC
Confidence 999999999999999875421 11 111 346788899999988864
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=99.96 E-value=2.6e-28 Score=190.19 Aligned_cols=126 Identities=27% Similarity=0.458 Sum_probs=103.8
Q ss_pred cceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcC--CCCCccceeecCCCCCCCcChHHHH
Q 032650 3 LPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVD--FKGQNFELLPFGGGRRICPGIQMGI 80 (136)
Q Consensus 3 i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~--~~~~~~~~~~fg~G~r~C~G~~~a~ 80 (136)
++|.+.+|+.++||.||+|+.|.++.+++|+||++|+||++|+||||+.++.. ....+..++|||.|+|.|+|++||+
T Consensus 357 ~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~ 436 (489)
T PLN02936 357 IRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFAL 436 (489)
T ss_pred cceeccCccccCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHH
Confidence 45666778888999999999999999999999999999999999999864321 1223457999999999999999999
Q ss_pred HHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCCCC
Q 032650 81 STVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYSHP 135 (136)
Q Consensus 81 ~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~ 135 (136)
++++++++.|+++|++++++++. +. ...+ ..+.++.++.|++++|..|
T Consensus 437 ~~~~~~la~ll~~f~~~~~~~~~---~~--~~~~--~~~~~~~~~~v~~~~R~~~ 484 (489)
T PLN02936 437 LEAIVALAVLLQRLDLELVPDQD---IV--MTTG--ATIHTTNGLYMTVSRRRVP 484 (489)
T ss_pred HHHHHHHHHHHHhCeEEecCCCc---cc--eecc--eEEeeCCCeEEEEEeeeCC
Confidence 99999999999999999876532 11 1223 4566777999999998765
No 27
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.95 E-value=3.3e-28 Score=188.99 Aligned_cols=123 Identities=22% Similarity=0.368 Sum_probs=105.2
Q ss_pred CcceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHHH
Q 032650 2 LLPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGIS 81 (136)
Q Consensus 2 ~i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~ 81 (136)
.++|.+.+|++++||.||+|+.|.++.+.+|+|+++|+||++|+|+||+++... ......++|||+|+|.|+|+++|..
T Consensus 348 ~~~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~-~~~~~~~l~FG~G~r~C~G~~lA~~ 426 (472)
T PLN02987 348 GIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGT-TVPSNVFTPFGGGPRLCPGYELARV 426 (472)
T ss_pred CccccCCCCeeECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCC-CCCCcceECCCCCCcCCCcHHHHHH
Confidence 357999999999999999999999999999999999999999999999875422 1234579999999999999999999
Q ss_pred HHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCCC
Q 032650 82 TVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYSH 134 (136)
Q Consensus 82 ~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~ 134 (136)
|++++++.|+++|++++.++.. . ... .++.|..++.+++++|..
T Consensus 427 e~~~~la~ll~~f~~~~~~~~~-----~--~~~--~~~~p~~~~~~~~~~r~~ 470 (472)
T PLN02987 427 ALSVFLHRLVTRFSWVPAEQDK-----L--VFF--PTTRTQKRYPINVKRRDV 470 (472)
T ss_pred HHHHHHHHHHhceEEEECCCCc-----e--eec--ccccCCCCceEEEEeccc
Confidence 9999999999999999876531 1 113 467888889999998853
No 28
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.95 E-value=2e-28 Score=189.65 Aligned_cols=117 Identities=17% Similarity=0.310 Sum_probs=100.3
Q ss_pred cceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHHHH
Q 032650 3 LPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGIST 82 (136)
Q Consensus 3 i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~~ 82 (136)
+.|.+.+|++++||.||||+.|.++.+++|+|+++|+||++|+||||+++. .+..++|||.|+|.|+|+++|+++
T Consensus 346 ~~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~-----~~~~~lpFG~G~r~C~G~~~A~~e 420 (463)
T PLN02196 346 TFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP-----KPNTFMPFGNGTHSCPGNELAKLE 420 (463)
T ss_pred cceeeccccccCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC-----CCCcccCcCCCCCCCchHHHHHHH
Confidence 468999999999999999999999999999999999999999999998632 345799999999999999999999
Q ss_pred HHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecC
Q 032650 83 VELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINY 132 (136)
Q Consensus 83 ~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 132 (136)
++++++.|+++|++++.+++. . .... .++.|++++.|+++..
T Consensus 421 ~~~~la~ll~~f~~~~~~~~~----~--~~~~--~~~~p~~~~~~~~~~~ 462 (463)
T PLN02196 421 ISVLIHHLTTKYRWSIVGTSN----G--IQYG--PFALPQNGLPIALSRK 462 (463)
T ss_pred HHHHHHHHHHhcEEEEcCCCC----c--eEEc--ccccCCCCceEEEecC
Confidence 999999999999999876532 1 1222 3456888888887653
No 29
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.95 E-value=1.9e-28 Score=187.72 Aligned_cols=124 Identities=27% Similarity=0.412 Sum_probs=110.5
Q ss_pred CcceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHHH
Q 032650 2 LLPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGIS 81 (136)
Q Consensus 2 ~i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~ 81 (136)
+..|...+|.+|+||.|||||.|.+..|.+.+||++|++|++|+||||++++. ...+++.++|||.|+|.|+|+++|.+
T Consensus 395 ~~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAEl 473 (519)
T KOG0159|consen 395 GNGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAEL 473 (519)
T ss_pred ccccccchhceeccceecCCCeEEEeehhhccChhhCCCccccChhhhccccc-CCCCCceecCCCCCccccchHHHHHH
Confidence 46799999999999999999999999999999999999999999999998763 55688999999999999999999999
Q ss_pred HHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCC
Q 032650 82 TVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYS 133 (136)
Q Consensus 82 ~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 133 (136)
|+.+.|+.|+++|+++..... +....+. +.+.|..++.+++++|.
T Consensus 474 El~llLarllr~f~V~~~~~~-----pv~~~~~--~il~P~~~l~f~f~~r~ 518 (519)
T KOG0159|consen 474 ELHLLLARLLRNFKVEFLHEE-----PVEYVYR--FILVPNRPLRFKFRPRN 518 (519)
T ss_pred HHHHHHHHHHHhcceeecCCC-----CccceeE--EEEcCCCCcceeeeeCC
Confidence 999999999999999988753 2333444 77788889999999885
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.93 E-value=2.8e-26 Score=173.08 Aligned_cols=126 Identities=21% Similarity=0.450 Sum_probs=106.6
Q ss_pred CcceeecCCeEEcC----EEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCC--CC--ccceeecCCCCCCC
Q 032650 2 LLPRQTISHCKING----YDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFK--GQ--NFELLPFGGGRRIC 73 (136)
Q Consensus 2 ~i~R~~~~d~~l~g----~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~--~~--~~~~~~fg~G~r~C 73 (136)
++.|.+.+|.++.+ |.||+|..|.++...+|+||++|++|+.|+|+||++++.+.+ +. ++.++|||+|.+.|
T Consensus 352 ~~~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~C 431 (486)
T KOG0684|consen 352 SLMRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRC 431 (486)
T ss_pred hHHHhhccceeeccCCcceecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCC
Confidence 45789999999955 999999999999999999999999999999999997664431 22 33459999999999
Q ss_pred cChHHHHHHHHHHHHHHHHhceeecCCCCCCCCCCcccccCceeeeccCCCeEEEeecCC
Q 032650 74 PGIQMGISTVELALTNLLYHFNWKLPNGMEGGDLNMEEAIGQSLTTSKKTPLMLVPINYS 133 (136)
Q Consensus 74 ~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~ 133 (136)
||+.||++|++.++..+|++|++++.++.- ..++ ... ++..|..+++++.+.|.
T Consensus 432 pGr~FA~~eIk~~~~l~L~~fdleLid~~~-P~~d---~s~--~v~~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 432 PGRSFAYLEIKQFISLLLRHFDLELIDGPF-PEVD---YSR--MVMQPEGDVRIRYKRRP 485 (486)
T ss_pred CchHHHHHHHHHHHHHHHHHcceeecCCCC-CCCC---HHH--hhcCCCCCceEEEeecC
Confidence 999999999999999999999999999731 2222 333 67799999999999885
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=1e-24 Score=166.98 Aligned_cols=89 Identities=30% Similarity=0.519 Sum_probs=84.7
Q ss_pred cceeecCCeEEcCEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCcChHHHHHH
Q 032650 3 LPRQTISHCKINGYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQMGIST 82 (136)
Q Consensus 3 i~R~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~~a~~~ 82 (136)
+.|.+.+|++++|+.||+|+.|.+++++.||||++|++|++|+|+||. ..+++||+|.|.|+|.+||++|
T Consensus 299 ~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~l~FG~G~H~ClG~~lA~~E 368 (411)
T COG2124 299 ARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAHLPFGGGPHRCLGAALARLE 368 (411)
T ss_pred cceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCCcCCCCCCccccCHHHHHHH
Confidence 678999999999999999999999999999999999999999999996 3689999999999999999999
Q ss_pred HHHHHHHHHHhceeecCCC
Q 032650 83 VELALTNLLYHFNWKLPNG 101 (136)
Q Consensus 83 ~~~~l~~ll~~f~~~~~~~ 101 (136)
++++++.|+++|++....+
T Consensus 369 ~~~~l~~ll~r~~~~~~~~ 387 (411)
T COG2124 369 LKVALAELLRRFPLLLLAE 387 (411)
T ss_pred HHHHHHHHHHhCchhhcCC
Confidence 9999999999999988765
No 32
>PLN02648 allene oxide synthase
Probab=99.89 E-value=4.4e-23 Score=160.61 Aligned_cols=97 Identities=15% Similarity=0.357 Sum_probs=82.7
Q ss_pred cceeecCCeEEc----CEEeCCCCEEEEeehhhccCCCCCCCCCCccCCCcCCCCcCCCCCccceeec---------CCC
Q 032650 3 LPRQTISHCKIN----GYDVYPETLLQVNVWAIGRDSRYWSKAEEFFPERFIDNSVDFKGQNFELLPF---------GGG 69 (136)
Q Consensus 3 i~R~~~~d~~l~----g~~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~~f---------g~G 69 (136)
+.|.+.+|++++ ||.||+|+.|.++.+.+|+||++|+||++|+|+||++++.. ....+++| |+|
T Consensus 353 ~~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~---~~~~~~~f~~g~~~~~~G~G 429 (480)
T PLN02648 353 QYGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGE---KLLKYVFWSNGRETESPTVG 429 (480)
T ss_pred ccceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCcc---ccccccccCCCcccCCCCCC
Confidence 467889999996 79999999999999999999999999999999999864321 11123333 677
Q ss_pred CCCCcChHHHHHHHHHHHHHHHHhce-eecCCCC
Q 032650 70 RRICPGIQMGISTVELALTNLLYHFN-WKLPNGM 102 (136)
Q Consensus 70 ~r~C~G~~~a~~~~~~~l~~ll~~f~-~~~~~~~ 102 (136)
+|.|+|++||++|++++++.|+++|+ +++.++.
T Consensus 430 ~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~ 463 (480)
T PLN02648 430 NKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDT 463 (480)
T ss_pred CccCccHHHHHHHHHHHHHHHHHHhCEEeecCCc
Confidence 89999999999999999999999998 9987765
No 33
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=76.15 E-value=3.4 Score=29.08 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=17.8
Q ss_pred eecCCeEEcCEEeCCCCEEEE
Q 032650 6 QTISHCKINGYDVYPETLLQV 26 (136)
Q Consensus 6 ~~~~d~~l~g~~ip~g~~v~~ 26 (136)
+..+|+.++|..||+||.+.-
T Consensus 74 RLle~i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 74 RLLEDIQIGGILIPKGTYLYG 94 (200)
T ss_pred EEcCceEECCEEeCCCCEEEE
Confidence 457899999999999988754
No 34
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=74.74 E-value=6.7 Score=26.20 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=18.8
Q ss_pred ecCCeEEcCEEeCCCCEEEEeeh
Q 032650 7 TISHCKINGYDVYPETLLQVNVW 29 (136)
Q Consensus 7 ~~~d~~l~g~~ip~g~~v~~~~~ 29 (136)
..+|++|+|..||+|++-+....
T Consensus 52 f~~dv~igGk~l~AG~Ysl~tiP 74 (145)
T PF11138_consen 52 FSKDVTIGGKKLKAGTYSLFTIP 74 (145)
T ss_pred ECCCeEECCEEcCCeeEEEEEec
Confidence 36799999999999998766653
No 35
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=61.86 E-value=8 Score=25.62 Aligned_cols=22 Identities=14% Similarity=0.363 Sum_probs=16.7
Q ss_pred CCcChHHHHHHHHHHHHHHHHh
Q 032650 72 ICPGIQMGISTVELALTNLLYH 93 (136)
Q Consensus 72 ~C~G~~~a~~~~~~~l~~ll~~ 93 (136)
+|.|++||...+-.+++.|+..
T Consensus 19 N~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999875
No 36
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=61.67 E-value=6.4 Score=22.09 Aligned_cols=7 Identities=43% Similarity=0.814 Sum_probs=5.6
Q ss_pred cCCCcCC
Q 032650 45 FPERFID 51 (136)
Q Consensus 45 ~p~R~~~ 51 (136)
||||||.
T Consensus 44 DPERWLP 50 (59)
T PF08492_consen 44 DPERWLP 50 (59)
T ss_pred CccccCc
Confidence 7889985
No 37
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=49.20 E-value=19 Score=28.31 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=17.9
Q ss_pred eecCCeEEcCEEeCCCCEEEEe
Q 032650 6 QTISHCKINGYDVYPETLLQVN 27 (136)
Q Consensus 6 ~~~~d~~l~g~~ip~g~~v~~~ 27 (136)
+..+|+.++|..||+||.+.-.
T Consensus 277 RLle~~~v~~~~ipkgt~l~g~ 298 (410)
T TIGR03779 277 RLLEPIQAGDLVIPKGTVLYGT 298 (410)
T ss_pred EEcCceeeCCEEecCCCEEEEE
Confidence 3578999999999999887543
No 38
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=45.82 E-value=16 Score=23.71 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=22.0
Q ss_pred eecCCeEEcCEEeCCCCEEEEeehhhccCCCCCC
Q 032650 6 QTISHCKINGYDVYPETLLQVNVWAIGRDSRYWS 39 (136)
Q Consensus 6 ~~~~d~~l~g~~ip~g~~v~~~~~~~~~d~~~~~ 39 (136)
.+.+|..++|-.||+|+.++.--. .|+++|.
T Consensus 72 I~~~d~~~~g~~i~~GtWv~~~k~---~ddelWe 102 (122)
T PF14550_consen 72 IAPEDMEIGGETIPKGTWVVGVKI---TDDELWE 102 (122)
T ss_pred ecCCCcccCCeeecceEEEEEEEe---cCHHHHH
Confidence 456788999999999999955432 3455553
No 39
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=43.17 E-value=22 Score=24.48 Aligned_cols=56 Identities=16% Similarity=0.392 Sum_probs=32.8
Q ss_pred CCccCCCcCCCCcCCCCCccceeecCCCCCCCcChH-H--HHHHHHHHHHHHHHhceeec
Q 032650 42 EEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQ-M--GISTVELALTNLLYHFNWKL 98 (136)
Q Consensus 42 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~-~--a~~~~~~~l~~ll~~f~~~~ 98 (136)
.+|+|++|-.--.....+..+.+-|+.|+=.|.|-. . |..-++ -++.+|+++.+..
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~-~i~~~L~~~g~~~ 87 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAAR-KYARIIQKLGFPA 87 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHH-HHHHHHHHcCCCC
Confidence 578998883211122224456789999999999833 3 222222 2445666666543
No 40
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=41.88 E-value=27 Score=23.96 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=33.2
Q ss_pred CCccCCCcCCCCcCCCCCccceeecCCCCCCCcCh-HH--HHHHHHHHHHHHHHhceeec
Q 032650 42 EEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGI-QM--GISTVELALTNLLYHFNWKL 98 (136)
Q Consensus 42 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~-~~--a~~~~~~~l~~ll~~f~~~~ 98 (136)
.+|+|++|-.--.....+..+.+-|+.|+=.|.|- .. |...+.. +..+|+++.+..
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~~~-~~~~L~~~g~~~ 87 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAARK-YARILQKLGFPV 87 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHHHH-HHHHHHHcCCCc
Confidence 57888888432122223455788999999999983 23 3333333 345566665544
No 41
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=40.23 E-value=9.3 Score=26.27 Aligned_cols=56 Identities=20% Similarity=0.371 Sum_probs=33.2
Q ss_pred CCccCCCcCCCCcCCCCCccceeecCCCCCCCcChH---HHHHHHHHHHHHHHHhceeec
Q 032650 42 EEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQ---MGISTVELALTNLLYHFNWKL 98 (136)
Q Consensus 42 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~---~a~~~~~~~l~~ll~~f~~~~ 98 (136)
.+|+|+||-.--.....+..+.+-|+.|+=.|.|-+ =|...+.. ++.+|++..+..
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGaks~~~a~~a~~~-~~~~L~~~g~~~ 87 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGAKSVEDLHRAVKE-IIKKLKDYGIKV 87 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEccCCHHHHHHHHHH-HHHHHHhcCCCc
Confidence 579999884322222234457899999999999763 23333333 344456655543
No 42
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=40.06 E-value=11 Score=26.45 Aligned_cols=36 Identities=25% Similarity=0.550 Sum_probs=23.9
Q ss_pred CCCccCCCcCCCCcCCCCCccceeecCCCCCCCcCh
Q 032650 41 AEEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGI 76 (136)
Q Consensus 41 p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~ 76 (136)
-.+|+|.||-.--.....+..+.+-|+.|+-.|.|-
T Consensus 49 N~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctgA 84 (200)
T KOG3302|consen 49 NAEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTGA 84 (200)
T ss_pred ccccCcccccEEEEEEcCCceEEEEecCCcEEEecc
Confidence 367999998432112223445678899999999964
No 43
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=34.87 E-value=24 Score=25.17 Aligned_cols=19 Identities=21% Similarity=0.504 Sum_probs=16.5
Q ss_pred hhccCCCCCCCCCCccCCC
Q 032650 30 AIGRDSRYWSKAEEFFPER 48 (136)
Q Consensus 30 ~~~~d~~~~~~p~~f~p~R 48 (136)
.-|.|+.+|.|.+.|+|-|
T Consensus 193 ~~n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 193 PDNEDPAFYDDTDVFRPGR 211 (212)
T ss_pred CCCCCcccccCccccCCCC
Confidence 4488999999999999987
No 44
>PRK00394 transcription factor; Reviewed
Probab=33.67 E-value=15 Score=25.41 Aligned_cols=35 Identities=26% Similarity=0.541 Sum_probs=24.1
Q ss_pred CCccCCCcCCCCcCCCCCccceeecCCCCCCCcCh
Q 032650 42 EEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGI 76 (136)
Q Consensus 42 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~ 76 (136)
.+|+|+||-.--.....+..+.+-|+.|+=.|.|-
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tGa 62 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTGA 62 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEcc
Confidence 57899988432222233455789999999999983
No 45
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=31.30 E-value=47 Score=21.37 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=17.0
Q ss_pred CCCCcChHHHHHHHHHHHHHHH
Q 032650 70 RRICPGIQMGISTVELALTNLL 91 (136)
Q Consensus 70 ~r~C~G~~~a~~~~~~~l~~ll 91 (136)
.|.|||..+++.....++..|-
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l~ 25 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEELG 25 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHHT
T ss_pred CCcCccHHHHHHHHHHHHHHcC
Confidence 4789999999999998887773
No 46
>PLN00062 TATA-box-binding protein; Provisional
Probab=29.13 E-value=17 Score=25.18 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=32.2
Q ss_pred CCccCCCcCCCCcCCCCCccceeecCCCCCCCcChH-HHHH-HHHHHHHHHHHhcee
Q 032650 42 EEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQ-MGIS-TVELALTNLLYHFNW 96 (136)
Q Consensus 42 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~-~a~~-~~~~~l~~ll~~f~~ 96 (136)
.+|+|++|-.--.....+..+.+-|+.|+=.|.|-. .... ...--++.+|++..+
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 578999883221122224457899999999999853 3222 122234455666655
No 47
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=28.37 E-value=24 Score=16.74 Aligned_cols=6 Identities=67% Similarity=1.204 Sum_probs=3.2
Q ss_pred ccCCCc
Q 032650 44 FFPERF 49 (136)
Q Consensus 44 f~p~R~ 49 (136)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 456665
No 48
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=27.57 E-value=24 Score=24.41 Aligned_cols=36 Identities=25% Similarity=0.502 Sum_probs=24.5
Q ss_pred CCccCCCcCCCCcCCCCCccceeecCCCCCCCcChH
Q 032650 42 EEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGIQ 77 (136)
Q Consensus 42 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~~ 77 (136)
.+|+|++|-.--.....+....+-|..|+=.|-|-+
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 468888883211122234457899999999999876
No 49
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=25.79 E-value=11 Score=22.43 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=22.8
Q ss_pred CCccCCCcCCCCcCCCCCccceeecCCCCCCCcCh
Q 032650 42 EEFFPERFIDNSVDFKGQNFELLPFGGGRRICPGI 76 (136)
Q Consensus 42 ~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~G~ 76 (136)
.+|+|++|-.--.....+..+.+-|..|+=.|.|-
T Consensus 31 ~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 31 VEYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred cEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 46888877321111222455788999999999985
No 50
>PF01629 DUF22: Domain of unknown function DUF22; InterPro: IPR002572 This region is found in 1 to 3 copies in archaeal proteins whose function is unknown. It only appears in multiple copies in proteins from Archaeoglobus fulgidus.
Probab=25.51 E-value=66 Score=20.51 Aligned_cols=32 Identities=6% Similarity=0.072 Sum_probs=23.5
Q ss_pred eecCCeEE----------cCEEeCCCCEEEEeehhhccCCCC
Q 032650 6 QTISHCKI----------NGYDVYPETLLQVNVWAIGRDSRY 37 (136)
Q Consensus 6 ~~~~d~~l----------~g~~ip~g~~v~~~~~~~~~d~~~ 37 (136)
.|.+|+.+ ....||++|.+.+..+.-|.--.+
T Consensus 42 IAdEdvevk~Ge~~~IkIk~I~iP~~tIv~p~~~~rha~G~v 83 (112)
T PF01629_consen 42 IADEDVEVKKGEVKIIKIKKIEIPPNTIVMPCAYMRHALGSV 83 (112)
T ss_pred EEcCeeEEecCCEEEEEEEEEecCCCCEEEEchHhhccCccE
Confidence 45666666 236799999999999988875444
No 51
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=23.48 E-value=54 Score=19.76 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhceeecCCC
Q 032650 82 TVELALTNLLYHFNWKLPNG 101 (136)
Q Consensus 82 ~~~~~l~~ll~~f~~~~~~~ 101 (136)
-|+-+++.+|+-|||.+..-
T Consensus 61 ~IrdAVsqVLkGYDWtLVPm 80 (84)
T PF12444_consen 61 CIRDAVSQVLKGYDWTLVPM 80 (84)
T ss_pred HHHHHHHHHhccCCceeeec
Confidence 46778999999999998753
No 52
>PHA03162 hypothetical protein; Provisional
Probab=21.83 E-value=71 Score=20.98 Aligned_cols=24 Identities=25% Similarity=0.584 Sum_probs=18.8
Q ss_pred CCCCCCCcChHHHHHHHHHHHHHH
Q 032650 67 GGGRRICPGIQMGISTVELALTNL 90 (136)
Q Consensus 67 g~G~r~C~G~~~a~~~~~~~l~~l 90 (136)
++|.+.||++...+-++..-|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 458889999998887777767665
No 53
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=20.69 E-value=1.1e+02 Score=18.65 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=14.9
Q ss_pred eEEcC--EEeCCCCEEEEeehhhcc
Q 032650 11 CKING--YDVYPETLLQVNVWAIGR 33 (136)
Q Consensus 11 ~~l~g--~~ip~g~~v~~~~~~~~~ 33 (136)
+.++| |.+.+|..++++....|.
T Consensus 36 ~~~~~~~~~l~~g~~~li~p~~~H~ 60 (136)
T PF02311_consen 36 LHIDGQEYPLKPGDLFLIPPGQPHS 60 (136)
T ss_dssp EEETTEEEEE-TT-EEEE-TTS-EE
T ss_pred EEECCEEEEEECCEEEEecCCccEE
Confidence 34454 889999999999988886
No 54
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.67 E-value=65 Score=26.73 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=18.0
Q ss_pred cCCCCCCCCCCccCCCcCCCCcCCCCCccceeecCCCCCCCc
Q 032650 33 RDSRYWSKAEEFFPERFIDNSVDFKGQNFELLPFGGGRRICP 74 (136)
Q Consensus 33 ~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~~fg~G~r~C~ 74 (136)
.+|..|...-.=||||||.-. .+.+|-|=--|++.-+
T Consensus 570 k~pknyn~~~tPDPERWLP~r-----eRS~yr~KrK~k~~~~ 606 (652)
T KOG2376|consen 570 KLPKNYNPKVTPDPERWLPRR-----ERSTYRPKRKGKRAAI 606 (652)
T ss_pred CCcccCCCCCCCChhhcccch-----hccccCcccccchhhh
Confidence 445555333344577887532 2234444444555433
Done!