BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032653
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BV7|A Chain A, Crystal Structure Of Gltp With Bound Gm3
Length = 208
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 30 DVELAAFSRACSYVSPLFGCLG-IAFKFAEMDY---VAKVDDLAEASKSIL-TLQSV--I 82
+E F A S++ P F CLG F + D + K+ + + + + TLQ++ +
Sbjct: 16 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEV 75
Query: 83 DRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE 122
++++ G K G+ T L+ +KRGL ++V + I E
Sbjct: 76 EKEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGE 114
>pdb|2EVT|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
Transfer Protein
pdb|3S0I|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
Transfer Protein Complexed With 3-O-Sulfo
Galactosylceramide Containing Nervonoyl Acyl Chain
Length = 209
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 30 DVELAAFSRACSYVSPLFGCLG----IAFKFAEMDYVAKVDDLAEASKSIL-TLQSV--I 82
+E F A S++ P F CLG K + K+ + + + + TLQ++ +
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKAVISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 83 DRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE 122
++++ G K G+ T L+ +KRGL ++V + I E
Sbjct: 77 EKEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGE 115
>pdb|1WBE|A Chain A, X-Ray Structure Of Bovine Gltp
Length = 209
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 30 DVELAAFSRACSYVSPLFGCLG-IAFKFAEMDY---VAKVDDLAEASKSIL-TLQSV--I 82
+E F A S++ P F CLG F + D + K+ + + + + TLQ++ +
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEV 76
Query: 83 DRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE 122
++++ G K G+ T L+ +KRGL ++V + I E
Sbjct: 77 EKEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGE 115
>pdb|1SWX|A Chain A, Crystal Structure Of A Human Glycolipid Transfer Protein
In Apo-Form
pdb|1SX6|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein In
Lactosylceramide-Bound Form
pdb|2EUK|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 24:1 Galactosylceramide
pdb|2EUM|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 8:0 Lactosylceramide
pdb|2EVD|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 12:0 Lactosylceramide
pdb|2EVL|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 18:2 Galactosylceramide
pdb|2EVS|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With N-Hexyl-Beta-D-Glucoside
pdb|2EVS|E Chain E, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With N-Hexyl-Beta-D-Glucoside
pdb|3RWV|A Chain A, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
Protein At 1.5 A Resolution
pdb|3RWV|B Chain B, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
Protein At 1.5 A Resolution
pdb|3RZN|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 3-O-Sulfo-Galactosylceramide Containing
Nervonoyl Acyl Chain (24:1)
pdb|3S0K|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With Glucosylceramide Containing Oleoyl Acyl
Chain (18:1)
Length = 209
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 30 DVELAAFSRACSYVSPLFGCLG-IAFKFAEMDY---VAKVDDLAEASKSIL-TLQSV--I 82
+E F A S++ P F CLG F + D + K+ + + + + TLQ++ +
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 83 DRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE 122
++++ G K G+ T L+ +KRGL ++V + I E
Sbjct: 77 EKEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGE 115
>pdb|1TFJ|A Chain A, Crystal Structure Of Bovine Glycolipid Transfer Protein In
Complex With A Fatty Acid
Length = 219
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 30 DVELAAFSRACSYVSPLFGCLG-IAFKFAEMDY---VAKVDDLAEASKSIL-TLQSV--I 82
+E F A S++ P F CLG F + D + K+ + + + + TLQ++ +
Sbjct: 27 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEV 86
Query: 83 DRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQH 127
++++ G K G+ T L+ +KRGL ++V + I E H
Sbjct: 87 EKEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGERDENH 130
>pdb|3RIC|A Chain A, Crystal Structure Of D48v||a47d Mutant Of Human Glycolipid
Transfer Protein Complexed With
3-O-Sulfo-Galactosylceramide Containing Nervonoyl Acyl
Chain (24:1)
Length = 209
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 8/100 (8%)
Query: 30 DVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVA----KVDDLAEASKSIL-TLQSV--I 82
+E F A S++ P F CLG D ++ K+ + + + + TLQ++ +
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKDVISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 83 DRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAE 122
++++ G K G+ T L+ +KRGL ++V + I E
Sbjct: 77 EKEMYGAEWPKVGA-TLALMWLKRGLRFIQVFLQSICDGE 115
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 48 GCLGIAFKFAEMDY----VAKVDDLAEASKSILTLQSVIDRDIEG 88
G +GI+ +E D AK D+ E K + T+QSV RDIEG
Sbjct: 1 GAMGISLGNSEADRQLLEAAKAGDV-ETVKKLCTVQSVNCRDIEG 44
>pdb|2V9K|A Chain A, Crystal Structure Of Human Pus10, A Novel Pseudouridine
Synthase
Length = 530
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 49 CLGIAFKFAEMDYVAKVDDLAEAS 72
CLGI +F E D++ KV EAS
Sbjct: 113 CLGILQEFCEKDFIKKVCQKVEAS 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,241,633
Number of Sequences: 62578
Number of extensions: 99679
Number of successful extensions: 269
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 8
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)