Query 032653
Match_columns 136
No_of_seqs 104 out of 346
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 04:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08718 GLTP: Glycolipid tran 100.0 6.2E-31 1.3E-35 197.0 8.7 97 29-125 1-102 (149)
2 KOG4189 Uncharacterized conser 100.0 6.1E-28 1.3E-32 187.0 11.5 124 1-124 1-127 (209)
3 KOG3221 Glycolipid transfer pr 99.9 3.2E-27 6.9E-32 183.1 7.9 99 25-124 12-114 (199)
4 PF04711 ApoA-II: Apolipoprote 70.5 11 0.00023 25.4 4.2 55 10-64 15-71 (76)
5 PF00036 EF-hand_1: EF hand; 55.1 15 0.00031 19.9 2.3 28 13-43 2-29 (29)
6 PF07889 DUF1664: Protein of u 46.1 1.2E+02 0.0025 22.3 6.9 76 36-119 41-116 (126)
7 PF06512 Na_trans_assoc: Sodiu 45.3 25 0.00055 27.5 3.2 22 99-120 9-30 (239)
8 cd08789 CARD_IPS-1_RIG-I Caspa 31.6 1E+02 0.0022 20.7 4.1 26 97-122 50-76 (84)
9 PF09373 PMBR: Pseudomurein-bi 30.4 57 0.0012 18.1 2.2 27 28-54 2-28 (33)
10 PF14788 EF-hand_10: EF hand; 28.6 90 0.002 19.4 3.1 31 11-44 21-51 (51)
11 smart00054 EFh EF-hand, calciu 28.6 69 0.0015 14.7 2.2 26 14-42 3-28 (29)
12 PF03735 ENT: ENT domain; Int 25.7 2E+02 0.0044 19.0 4.6 49 37-86 10-60 (73)
13 PF07002 Copine: Copine; Inte 23.6 96 0.0021 23.0 3.0 45 31-75 64-109 (146)
14 PF13405 EF-hand_6: EF-hand do 23.1 1.3E+02 0.0028 15.7 3.1 27 12-41 1-27 (31)
15 KOG0044 Ca2+ sensor (EF-Hand s 23.0 1.2E+02 0.0025 23.8 3.5 44 6-52 142-185 (193)
16 KOG4100 Uncharacterized conser 22.7 36 0.00078 24.9 0.5 11 98-108 16-26 (125)
17 PF14493 HTH_40: Helix-turn-he 22.5 1.1E+02 0.0023 20.4 2.9 43 6-52 23-67 (91)
18 PF05369 MtmB: Monomethylamine 21.1 1.2E+02 0.0025 27.0 3.4 25 30-54 433-457 (457)
19 TIGR02797 exbB tonB-system ene 20.2 77 0.0017 24.7 2.0 23 35-57 120-142 (211)
No 1
>PF08718 GLTP: Glycolipid transfer protein (GLTP); InterPro: IPR014830 Glycolipid transfer protein (GLTP) is a cytosolic protein that catalyses the intermembrane transfer of glycolipids such as glycosphingolipids, glyceroglycolipids, and possibly glucosylceramides, but not of phospholipids. The GLTP protein consists of a single domain with a multi-helical structure consisting of two layers of orthogonally packed helices [, ]. The GLTP domain is also found in trans-Golgi network proteins involved in Golgi-to-cell-surface membrane traffic [].; GO: 0017089 glycolipid transporter activity, 0051861 glycolipid binding, 0046836 glycolipid transport, 0005737 cytoplasm; PDB: 2BV7_A 1TFJ_A 1WBE_A 3KV0_A 3RWV_B 2EVD_A 2EUK_A 3RZN_A 2EVL_A 3S0K_A ....
Probab=99.97 E-value=6.2e-31 Score=196.96 Aligned_cols=97 Identities=28% Similarity=0.500 Sum_probs=90.3
Q ss_pred CCcChHHHHHHHhHHHHHHhhcCcchhHHHhhHHHhHHHHH-----hccccchhHHHHHHHhHhcCCccCCCCchhHHHH
Q 032653 29 ADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLA-----EASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLR 103 (136)
Q Consensus 29 ~~I~~~~fL~a~~~l~~~fd~LG~~F~fv~~Dv~~kI~~L~-----~~~~~y~TL~~mv~~E~~~~~~~~~~S~sr~LLr 103 (136)
++|++++||+||++++++||+||++|+||++||.+||++|+ .+|++|.||++||++|++.|++++++||||+|||
T Consensus 1 n~i~~~~fl~a~~~l~~~~~~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~s~~LLw 80 (149)
T PF08718_consen 1 NDIDTEPFLEACRELVKFFDKLGTVFSFVKSDVQGNIKKLRKAYQEEDPEKYKTLESMVDYEVENGTHKKKGSGSRTLLW 80 (149)
T ss_dssp SEEBHHHHHHHHTTSHHHHCCSSGGGHHHHHHHHHHHHHHHHHH-HHSTTTTSBHHHHHHHHHHHHGGGTSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCChhhhccHHHHHHHHHHHhcccccccHHHHHHH
Confidence 47999999999999999999999999999999999999994 5788999999999999999999988999999999
Q ss_pred HHhHHHHHHHHHHHHHhCcccc
Q 032653 104 VKRGLDMVRVLFEQILAAEYVY 125 (136)
Q Consensus 104 L~RaL~Fi~~~l~~l~~~~~~~ 125 (136)
|||||+|+..||+++.+++++.
T Consensus 81 L~RaL~Fi~~~l~~l~~~~~~~ 102 (149)
T PF08718_consen 81 LHRALEFIVAFLENLLESPDDE 102 (149)
T ss_dssp HHHHHHHHHHHHHHHHTS--BT
T ss_pred HHHHHHHHHHHHHHHHhhcchH
Confidence 9999999999999999976654
No 2
>KOG4189 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=6.1e-28 Score=187.01 Aligned_cols=124 Identities=38% Similarity=0.543 Sum_probs=110.4
Q ss_pred CCCCCCCCChHHHHHHHHHhHhhhcCCCCCcChHHHHHHHhHHHHHHhhcCcchhHHHhhHHHhHHHHHh-ccccchhHH
Q 032653 1 MAGTDNDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAE-ASKSILTLQ 79 (136)
Q Consensus 1 ~~~~~~~f~l~~~~~~F~~~~~~~~~~~~~I~~~~fL~a~~~l~~~fd~LG~~F~fv~~Dv~~kI~~L~~-~~~~y~TL~ 79 (136)
|.|.+...++.++.+.|+.+..++..++++|++++|+.||+++++||.+||++|+||.+|+..||++|.+ ......|+.
T Consensus 1 ~~~~~~~~~~~~i~~~~~~i~~~v~~e~~eV~L~~f~~a~e~v~~~f~~lG~iF~Fve~Dv~aKid~L~~l~ssd~et~r 80 (209)
T KOG4189|consen 1 PFCMEQLGPLPKILQAFKTIEKSVIEEDNEVDLDQFLLAYEEVCKFFGCLGTIFSFVEKDVRAKIDDLVELRSSDPETYR 80 (209)
T ss_pred CcchhhccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHH
Confidence 3566777889999999999999999999999999999999999999999999999999999999999943 333367778
Q ss_pred HHHHHhHhcCCccCCC--CchhHHHHHHhHHHHHHHHHHHHHhCccc
Q 032653 80 SVIDRDIEGNCVRKAG--SHTRNLLRVKRGLDMVRVLFEQILAAEYV 124 (136)
Q Consensus 80 ~mv~~E~~~~~~~~~~--S~sr~LLrL~RaL~Fi~~~l~~l~~~~~~ 124 (136)
.|++.+.++..+++++ ||||+||||+|||+|++.||.++.+++++
T Consensus 81 tild~~~e~~~~~~~G~~Sgtr~Llrl~R~LefV~efl~~i~as~nD 127 (209)
T KOG4189|consen 81 TILDLDTEESEVGTIGNQSGTRNLLRLNRALEFVIEFLDQIFASTND 127 (209)
T ss_pred HHHHHHHHHhHhcccCccccchHHHHHHhhHHHHHHHHHHHHcCCCc
Confidence 8888888888888777 99999999999999999999999988653
No 3
>KOG3221 consensus Glycolipid transfer protein [Carbohydrate transport and metabolism]
Probab=99.94 E-value=3.2e-27 Score=183.06 Aligned_cols=99 Identities=23% Similarity=0.386 Sum_probs=93.8
Q ss_pred cCCCCCcChHHHHHHHhHHHHHHhhcCcchhHHHhhHHHhHHHHH----hccccchhHHHHHHHhHhcCCccCCCCchhH
Q 032653 25 NSQAADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLA----EASKSILTLQSVIDRDIEGNCVRKAGSHTRN 100 (136)
Q Consensus 25 ~~~~~~I~~~~fL~a~~~l~~~fd~LG~~F~fv~~Dv~~kI~~L~----~~~~~y~TL~~mv~~E~~~~~~~~~~S~sr~ 100 (136)
..+++.|+|.+||+||.+|++++|+||++|+||++||.|||+++. +++.+|.+||.+|+.|++....+ ++|||++
T Consensus 12 l~~d~~i~T~~FL~ac~~i~pvid~lG~~ftpVk~Di~gNI~kv~~~y~~d~~k~~~Lq~~i~~eie~~~a~-~~sat~a 90 (199)
T KOG3221|consen 12 LPDDGKIETGPFLEACKHIVPVIDKLGAVFTPVKSDISGNITKVKKVYDTDKEKFKYLQKIVKVEIETDIAE-KVSATLA 90 (199)
T ss_pred CCcccCCccHHHHHHHhhhhhHHHHhhhhhHhHHHHhhccHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcc-cchhhHH
Confidence 367899999999999999999999999999999999999999994 89999999999999999998887 8999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhCccc
Q 032653 101 LLRVKRGLDMVRVLFEQILAAEYV 124 (136)
Q Consensus 101 LLrL~RaL~Fi~~~l~~l~~~~~~ 124 (136)
||||+|||+|+..||+++.++.++
T Consensus 91 LLWLkRgldF~~~~l~~l~~~~~~ 114 (199)
T KOG3221|consen 91 LLWLKRGLDFTLAFLQELVNGESD 114 (199)
T ss_pred HHHHHhHHHHHHHHHHHHHcchhh
Confidence 999999999999999999988764
No 4
>PF04711 ApoA-II: Apolipoprotein A-II (ApoA-II); InterPro: IPR006801 Apolipoprotein A-II (ApoA-II) is the second major apolipoprotein of high density lipoprotein in human plasma. Mature ApoA-II is present as a dimer of two 77-amino acid chains joined by a disulphide bridge []. ApoA-II regulates many steps in HDL metabolism, and its role in coronary heart disease is unclear []. In bovine serum, the ApoA-II homologue is present in almost free form. Bovine ApoA-II shows antimicrobial activity against Escherichia coli and yeasts in phosphate buffered saline (PBS) [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1L6L_W 2OU1_E.
Probab=70.53 E-value=11 Score=25.45 Aligned_cols=55 Identities=16% Similarity=0.205 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhHhhhcCCCCCcChHHHHH-HHhHHHHHHhhcCc-chhHHHhhHHHh
Q 032653 10 LTKISESFKELAATVNSQAADVELAAFSR-ACSYVSPLFGCLGI-AFKFAEMDYVAK 64 (136)
Q Consensus 10 l~~~~~~F~~~~~~~~~~~~~I~~~~fL~-a~~~l~~~fd~LG~-~F~fv~~Dv~~k 64 (136)
+..|++.++++.++|++++=---...|.+ .-++++|+..+.|+ ++.|.++=|.-+
T Consensus 15 ~qt~TdYgKDL~Ekvk~pElqsQakaYfektqeQltPlvkKagtdl~nflS~~v~~~ 71 (76)
T PF04711_consen 15 FQTVTDYGKDLVEKVKGPELQSQAKAYFEKTQEQLTPLVKKAGTDLMNFLSSFVELK 71 (76)
T ss_dssp HHHHHHHHHHHHHHHHSHHTSSTCHHHHHHHHHHHHHHHHGGHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHhhccc
Confidence 56788999999988877765555666666 45679999999998 689988766544
No 5
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=55.10 E-value=15 Score=19.86 Aligned_cols=28 Identities=14% Similarity=0.428 Sum_probs=20.8
Q ss_pred HHHHHHHhHhhhcCCCCCcChHHHHHHHhHH
Q 032653 13 ISESFKELAATVNSQAADVELAAFSRACSYV 43 (136)
Q Consensus 13 ~~~~F~~~~~~~~~~~~~I~~~~fL~a~~~l 43 (136)
+...|+.... ..++.|+.++|..+++.+
T Consensus 2 ~~~~F~~~D~---d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 2 LKEAFREFDK---DGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHST---TSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHHCC---CCCCcCCHHHHHHHHHhC
Confidence 4456776653 667889999999988753
No 6
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=46.11 E-value=1.2e+02 Score=22.30 Aligned_cols=76 Identities=12% Similarity=0.192 Sum_probs=56.7
Q ss_pred HHHHHhHHHHHHhhcCcchhHHHhhHHHhHHHHHhccccchhHHHHHHHhHhcCCccCCCCchhHHHHHHhHHHHHHHHH
Q 032653 36 FSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLAEASKSILTLQSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLF 115 (136)
Q Consensus 36 fL~a~~~l~~~fd~LG~~F~fv~~Dv~~kI~~L~~~~~~y~TL~~mv~~E~~~~~~~~~~S~sr~LLrL~RaL~Fi~~~l 115 (136)
.-+||..+.+=++.+....+=.+..+.++|+.+...-+...-+...++.|+.. .-+.+=+.+.-++.++...
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~--------v~~dv~~i~~dv~~v~~~V 112 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTE--------VREDVSQIGDDVDSVQQMV 112 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999976666666677778877754 3444555555666666555
Q ss_pred HHHH
Q 032653 116 EQIL 119 (136)
Q Consensus 116 ~~l~ 119 (136)
+.|-
T Consensus 113 ~~Le 116 (126)
T PF07889_consen 113 EGLE 116 (126)
T ss_pred HHHH
Confidence 5553
No 7
>PF06512 Na_trans_assoc: Sodium ion transport-associated; InterPro: IPR010526 Members of this entry contain a region found exclusively in eukaryotic sodium channels or their subunits, many of which are voltage-gated. Members very often also contain between one and four copies of IPR005821 from INTERPRO and, less often, one copy of IPR000048 from INTERPRO.; GO: 0005248 voltage-gated sodium channel activity, 0006814 sodium ion transport, 0001518 voltage-gated sodium channel complex
Probab=45.30 E-value=25 Score=27.51 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=17.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHh
Q 032653 99 RNLLRVKRGLDMVRVLFEQILA 120 (136)
Q Consensus 99 r~LLrL~RaL~Fi~~~l~~l~~ 120 (136)
-|+-|++||+.|++..+.....
T Consensus 9 iAi~RI~Rgi~~vK~~i~~~~~ 30 (239)
T PF06512_consen 9 IAIARIQRGIAWVKRAILDFCC 30 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999887776543
No 8
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=31.63 E-value=1e+02 Score=20.67 Aligned_cols=26 Identities=12% Similarity=0.190 Sum_probs=18.8
Q ss_pred chhHHH-HHHhHHHHHHHHHHHHHhCc
Q 032653 97 HTRNLL-RVKRGLDMVRVLFEQILAAE 122 (136)
Q Consensus 97 ~sr~LL-rL~RaL~Fi~~~l~~l~~~~ 122 (136)
+++.|+ .|.|+-.|...|+..|....
T Consensus 50 aa~~Ll~~L~r~~~Wf~~Fl~AL~~~~ 76 (84)
T cd08789 50 AAWTLLDTLVRRDNWLEPFLDALRECG 76 (84)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHcC
Confidence 444443 35689999999999998654
No 9
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=30.43 E-value=57 Score=18.06 Aligned_cols=27 Identities=11% Similarity=0.146 Sum_probs=23.0
Q ss_pred CCCcChHHHHHHHhHHHHHHhhcCcch
Q 032653 28 AADVELAAFSRACSYVSPLFGCLGIAF 54 (136)
Q Consensus 28 ~~~I~~~~fL~a~~~l~~~fd~LG~~F 54 (136)
.+.|..++|++++..+..|.+.=|..-
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngRlP 28 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGRLP 28 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCC
Confidence 367899999999999999998877653
No 10
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=28.59 E-value=90 Score=19.43 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=23.8
Q ss_pred HHHHHHHHHhHhhhcCCCCCcChHHHHHHHhHHH
Q 032653 11 TKISESFKELAATVNSQAADVELAAFSRACSYVS 44 (136)
Q Consensus 11 ~~~~~~F~~~~~~~~~~~~~I~~~~fL~a~~~l~ 44 (136)
.....-|++|.. +.++.++-++|.+.|+.++
T Consensus 21 ~yA~~LFq~~D~---s~~g~Le~~Ef~~Fy~~LT 51 (51)
T PF14788_consen 21 EYARQLFQECDK---SQSGRLEGEEFEEFYKRLT 51 (51)
T ss_dssp HHHHHHHHHH-S---SSSSEBEHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcc---cCCCCccHHHHHHHHHHhC
Confidence 345567888874 7788899999999998763
No 11
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=28.58 E-value=69 Score=14.71 Aligned_cols=26 Identities=12% Similarity=0.296 Sum_probs=16.3
Q ss_pred HHHHHHhHhhhcCCCCCcChHHHHHHHhH
Q 032653 14 SESFKELAATVNSQAADVELAAFSRACSY 42 (136)
Q Consensus 14 ~~~F~~~~~~~~~~~~~I~~~~fL~a~~~ 42 (136)
...|+.+.. ..++.|+..+|......
T Consensus 3 ~~~f~~~d~---~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDK---DGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCC---CCCCcEeHHHHHHHHHh
Confidence 345555542 34567998888877654
No 12
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=25.72 E-value=2e+02 Score=19.02 Aligned_cols=49 Identities=12% Similarity=0.147 Sum_probs=32.9
Q ss_pred HHHHhHHHHHHhhcCcchhHHHhhHHHhHHHH--HhccccchhHHHHHHHhH
Q 032653 37 SRACSYVSPLFGCLGIAFKFAEMDYVAKVDDL--AEASKSILTLQSVIDRDI 86 (136)
Q Consensus 37 L~a~~~l~~~fd~LG~~F~fv~~Dv~~kI~~L--~~~~~~y~TL~~mv~~E~ 86 (136)
++||..++..|..=|+ +++=+..+..++.+. -++..+-.-+..++..|.
T Consensus 10 ~eAY~svl~Af~Aqg~-lsweke~lLt~Lr~~L~IS~e~H~~~l~~~~~De~ 60 (73)
T PF03735_consen 10 LEAYSSVLRAFRAQGP-LSWEKEKLLTELRKELNISDEEHREELRRAVSDEQ 60 (73)
T ss_dssp HHHHHHHHHHHHHHSS---HHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhccHH
Confidence 6899999999999999 898888888877765 244444444555555543
No 13
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=23.64 E-value=96 Score=22.98 Aligned_cols=45 Identities=9% Similarity=-0.019 Sum_probs=34.4
Q ss_pred cChHHHHHHHhHHHHHHhhcCcc-hhHHHhhHHHhHHHHHhccccc
Q 032653 31 VELAAFSRACSYVSPLFGCLGIA-FKFAEMDYVAKVDDLAEASKSI 75 (136)
Q Consensus 31 I~~~~fL~a~~~l~~~fd~LG~~-F~fv~~Dv~~kI~~L~~~~~~y 75 (136)
--.+.-+++|++.++-...-|+. |+||-+.+....+....++..|
T Consensus 64 ~Gi~gvl~~Y~~~~~~v~l~GPT~fapiI~~a~~~a~~~~~~~~~Y 109 (146)
T PF07002_consen 64 QGIDGVLEAYRKALPKVQLSGPTNFAPIINHAAKIAKQSNQNGQQY 109 (146)
T ss_pred cCHHHHHHHHHHHhhheEECCCccHHHHHHHHHHHHhhhccCCceE
Confidence 33678899999999999999986 9999988887777533344444
No 14
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=23.15 E-value=1.3e+02 Score=15.70 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=18.9
Q ss_pred HHHHHHHHhHhhhcCCCCCcChHHHHHHHh
Q 032653 12 KISESFKELAATVNSQAADVELAAFSRACS 41 (136)
Q Consensus 12 ~~~~~F~~~~~~~~~~~~~I~~~~fL~a~~ 41 (136)
++...|+.... ..++-|+.++|..+.+
T Consensus 1 ~l~~~F~~~D~---d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDK---DGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-T---TSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCC---CCCCcCcHHHHHHHHH
Confidence 35667777763 5677899998887765
No 15
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=22.96 E-value=1.2e+02 Score=23.81 Aligned_cols=44 Identities=14% Similarity=0.397 Sum_probs=35.0
Q ss_pred CCCChHHHHHHHHHhHhhhcCCCCCcChHHHHHHHhHHHHHHhhcCc
Q 032653 6 NDKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLGI 52 (136)
Q Consensus 6 ~~f~l~~~~~~F~~~~~~~~~~~~~I~~~~fL~a~~~l~~~fd~LG~ 52 (136)
.+-+-..+...|+++.. ..|+.+.+++|.++|..--.++..|+.
T Consensus 142 ~~~~~~~v~~if~k~D~---n~Dg~lT~eef~~~~~~d~~i~~~l~~ 185 (193)
T KOG0044|consen 142 EETPEERVDKIFSKMDK---NKDGKLTLEEFIEGCKADPSILRALEQ 185 (193)
T ss_pred cccHHHHHHHHHHHcCC---CCCCcccHHHHHHHhhhCHHHHHHhhh
Confidence 34556677788888873 667889999999999998888887765
No 16
>KOG4100 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.67 E-value=36 Score=24.94 Aligned_cols=11 Identities=45% Similarity=0.918 Sum_probs=9.1
Q ss_pred hhHHHHHHhHH
Q 032653 98 TRNLLRVKRGL 108 (136)
Q Consensus 98 sr~LLrL~RaL 108 (136)
=+.+|||||+|
T Consensus 16 YkriLrlHr~l 26 (125)
T KOG4100|consen 16 YKRILRLHRGL 26 (125)
T ss_pred HHHHHHHHccC
Confidence 36789999987
No 17
>PF14493 HTH_40: Helix-turn-helix domain
Probab=22.52 E-value=1.1e+02 Score=20.40 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=29.0
Q ss_pred CCCChHHHHHHHHHhHhhhcCCCCCcChHHHHHHH--hHHHHHHhhcCc
Q 032653 6 NDKPLTKISESFKELAATVNSQAADVELAAFSRAC--SYVSPLFGCLGI 52 (136)
Q Consensus 6 ~~f~l~~~~~~F~~~~~~~~~~~~~I~~~~fL~a~--~~l~~~fd~LG~ 52 (136)
|....+.+..++.++. ..+.+++..+|+..- +.+...++..|.
T Consensus 23 R~L~~sTI~~HL~~~~----~~g~~~~~~~~l~~e~~~~I~~~~~~~~~ 67 (91)
T PF14493_consen 23 RGLKESTIYGHLAELI----ESGEPLDIEELLSEEEIKQIEDAIEKLGS 67 (91)
T ss_pred cCCCHHHHHHHHHHHH----HhCCCCCHHHhCCHHHHHHHHHHHHHcCc
Confidence 4566778888888887 345568888887543 555666666664
No 18
>PF05369 MtmB: Monomethylamine methyltransferase MtmB; InterPro: IPR008031 Monomethylamine methyltransferase of the archaebacterium Methanosarcina barkeri contains a novel amino acid, pyrrolysine, encoded by the termination codon UAG []. The structure of the enzyme reveals a homohexamer comprised of individual subunits with a TIM barrel fold. MtmB initiates the metabolism of monomethylamine by catalysing the transfer of the methyl group from monomethylamine to the corrinoid cofactor of MtmC.; GO: 0008168 methyltransferase activity
Probab=21.06 E-value=1.2e+02 Score=27.00 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=22.6
Q ss_pred CcChHHHHHHHhHHHHHHhhcCcch
Q 032653 30 DVELAAFSRACSYVSPLFGCLGIAF 54 (136)
Q Consensus 30 ~I~~~~fL~a~~~l~~~fd~LG~~F 54 (136)
=-|+++|++-|+++.+-+.-||-+|
T Consensus 433 ~~Pt~EY~~~Y~~~~k~l~~~gl~~ 457 (457)
T PF05369_consen 433 MQPTDEYMNVYDKAKKELEDLGLVF 457 (457)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcccC
Confidence 4689999999999999999999876
No 19
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=20.20 E-value=77 Score=24.72 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=19.2
Q ss_pred HHHHHHhHHHHHHhhcCcchhHH
Q 032653 35 AFSRACSYVSPLFGCLGIAFKFA 57 (136)
Q Consensus 35 ~fL~a~~~l~~~fd~LG~~F~fv 57 (136)
.+|...-.+.|+++.||+|.+.+
T Consensus 120 ~~L~ti~~~APllGLLGTV~Gmi 142 (211)
T TIGR02797 120 GVLATIGATAPFVGLFGTVWGIM 142 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788999999999987764
Done!