Query 032653
Match_columns 136
No_of_seqs 104 out of 346
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 06:17:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i3f_A Glycolipid transfer-lik 100.0 1.9E-32 6.5E-37 216.4 11.1 111 4-123 6-119 (224)
2 3kv0_A HET-C2; GLTP, glycolipi 100.0 3.1E-32 1.1E-36 213.2 6.6 111 7-126 14-132 (209)
3 3rzn_A GLTP, glycolipid transf 100.0 4.5E-31 1.6E-35 206.5 9.5 98 27-124 14-117 (209)
4 1k9u_A Polcalcin PHL P 7; poll 26.2 73 0.0025 18.3 3.4 27 13-42 5-31 (78)
5 2g7r_A Mucosa-associated lymph 24.0 1.2E+02 0.004 21.2 4.4 48 73-120 43-106 (117)
6 3rm1_A Protein S100-B; alpha-h 23.8 1.3E+02 0.0045 18.4 4.9 37 7-46 48-84 (92)
7 2opo_A Polcalcin CHE A 3; calc 22.2 36 0.0012 20.2 1.4 31 9-42 9-39 (86)
8 2l2e_A Calcium-binding protein 21.2 1.1E+02 0.0037 20.6 3.9 41 8-51 144-184 (190)
9 1tiz_A Calmodulin-related prot 20.3 86 0.0029 17.1 2.8 12 29-40 16-27 (67)
10 1k2h_A S100A1, S-100 protein, 17.5 1.7E+02 0.0059 17.2 4.8 33 11-46 52-84 (93)
No 1
>2i3f_A Glycolipid transfer-like protein; GLTP superfamily, GLTP-like, protein structure initiative, PSI; 1.38A {Galdieria sulphuraria} PDB: 2q52_A
Probab=99.98 E-value=1.9e-32 Score=216.38 Aligned_cols=111 Identities=19% Similarity=0.309 Sum_probs=99.9
Q ss_pred CCCCCChHHHHHHHHHhHhhhcCC-CCCcChHHHHHHHhHHHHHHhhcCcchhHHHhhHHHhHHHHH-hccc-cchhHHH
Q 032653 4 TDNDKPLTKISESFKELAATVNSQ-AADVELAAFSRACSYVSPLFGCLGIAFKFAEMDYVAKVDDLA-EASK-SILTLQS 80 (136)
Q Consensus 4 ~~~~f~l~~~~~~F~~~~~~~~~~-~~~I~~~~fL~a~~~l~~~fd~LG~~F~fv~~Dv~~kI~~L~-~~~~-~y~TL~~ 80 (136)
.+..|++.+|..+|++++ .. +++|+|.+||+||++|++|||+||++|+||++||.+||++|. .+|. +|.||++
T Consensus 6 ~~~~f~l~~v~~~F~~~~----~~~~~~I~t~~FL~a~~~l~~~fd~LG~~F~~v~~Dv~gnI~kL~~~~p~~~~~TL~~ 81 (224)
T 2i3f_A 6 NEEKEDFGIIVILWKQVT----VKEDGKVPLEPFLTAAKEVLRVVDAFGSGFRIVKNDIAGNIKKLYRANQTVHAETLQE 81 (224)
T ss_dssp -----CTTHHHHHHHTSC----CCTTCCCBHHHHHHHHHHTHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTTCCSBHHH
T ss_pred cccCCCHHHHHHHHHHhh----ccCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCccchhhhHHH
Confidence 467899999999999998 43 689999999999999999999999999999999999999994 5788 9999999
Q ss_pred HHHHhHhcCCccCCCCchhHHHHHHhHHHHHHHHHHHHHhCcc
Q 032653 81 VIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEY 123 (136)
Q Consensus 81 mv~~E~~~~~~~~~~S~sr~LLrL~RaL~Fi~~~l~~l~~~~~ 123 (136)
||.+|+ + +++||||+||||||||+|++.||+++.++++
T Consensus 82 mv~~E~-~----k~~S~tr~LLwL~RaL~Fi~~~l~~l~~~~~ 119 (224)
T 2i3f_A 82 LIIAEN-S----PDGLATVALLWLKRAFQFIASFLRRLVVTDK 119 (224)
T ss_dssp HHHHHC-S----TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHH-h----cCCchhHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999 4 5789999999999999999999999999887
No 2
>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein; HET: MLY; 1.90A {Podospora anserina}
Probab=99.97 E-value=3.1e-32 Score=213.23 Aligned_cols=111 Identities=19% Similarity=0.320 Sum_probs=100.2
Q ss_pred CCChHHHHHHHHHhHhhhcCC---CCCcChHHHHHHHhHHHHHHhhcCc-chhHHHhhHHHhHHHHH----hccccchhH
Q 032653 7 DKPLTKISESFKELAATVNSQ---AADVELAAFSRACSYVSPLFGCLGI-AFKFAEMDYVAKVDDLA----EASKSILTL 78 (136)
Q Consensus 7 ~f~l~~~~~~F~~~~~~~~~~---~~~I~~~~fL~a~~~l~~~fd~LG~-~F~fv~~Dv~~kI~~L~----~~~~~y~TL 78 (136)
...+++|..+|++|+ .+ +++|+|.+||+||++|++|||+||+ +|+||++||.+||++|+ .+|.+|.||
T Consensus 14 ~tff~~~~~~F~~~~----~~~~~~~~I~t~~fL~a~~~l~~~fd~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~tL 89 (209)
T 3kv0_A 14 ATFLETFXXSFVDVP----IDAEXGNAISTAEFLEAAESLTTMFDVLGSIAFSPVXTDMLGNVEXIRXRMLAAPLESQNI 89 (209)
T ss_dssp -CGGGGCSSCGGGCC----EEGGGTSEEBHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSGGGCSBH
T ss_pred CccHHHHHhhHHhCC----CccccCCCccHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhHHHHHHHhhcCchhhchH
Confidence 345889999999997 44 7899999999999999999999999 99999999999999995 589999999
Q ss_pred HHHHHHhHhcCCccCCCCchhHHHHHHhHHHHHHHHHHHHHhCcccch
Q 032653 79 QSVIDRDIEGNCVRKAGSHTRNLLRVKRGLDMVRVLFEQILAAEYVYQ 126 (136)
Q Consensus 79 ~~mv~~E~~~~~~~~~~S~sr~LLrL~RaL~Fi~~~l~~l~~~~~~~~ 126 (136)
++||++|++. +++||||+||||||||+|++.||+++. +++++-
T Consensus 90 ~~mv~~E~~~----~~~S~tr~LLwL~RaL~fi~~~l~~l~-~~~~~l 132 (209)
T 3kv0_A 90 QDLVRNELXT----XSHTATEGLLWLVRGLEFTCIALSXNI-GSTEEL 132 (209)
T ss_dssp HHHHHHHTCC-----CCHHHHHHHHHHHHHHHHHHHHHHHH-TSCCCH
T ss_pred HHHHHHHHHh----cccchHHHHHHHHHHHHHHHHHHHHHc-CCCCcH
Confidence 9999999987 478999999999999999999999999 655443
No 3
>3rzn_A GLTP, glycolipid transfer protein; GLTP-fold, lipid transport; HET: CIS; 1.10A {Homo sapiens} PDB: 1sx6_A* 2euk_A* 2eum_A* 2evd_A* 2evl_A* 2evs_A* 1swx_A 3rwv_A* 3s0k_A* 3s0i_A* 2evt_A* 1wbe_A* 3ric_A* 1tfj_A* 2bv7_A*
Probab=99.97 E-value=4.5e-31 Score=206.49 Aligned_cols=98 Identities=24% Similarity=0.390 Sum_probs=91.7
Q ss_pred CCCCcChHHHHHHHhHHHHHHhhcCc-chhHHHhhHHHhHHHHH----hccccchhHHHHHHHhHhcCCccC-CCCchhH
Q 032653 27 QAADVELAAFSRACSYVSPLFGCLGI-AFKFAEMDYVAKVDDLA----EASKSILTLQSVIDRDIEGNCVRK-AGSHTRN 100 (136)
Q Consensus 27 ~~~~I~~~~fL~a~~~l~~~fd~LG~-~F~fv~~Dv~~kI~~L~----~~~~~y~TL~~mv~~E~~~~~~~~-~~S~sr~ 100 (136)
++++|+|.+||+||++|++|||+||+ +|+||++||.|||++|+ ++|.+|.||++||++|++.|++.+ ++||||+
T Consensus 14 ~~~~i~t~~fL~a~~~l~~~~d~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~~~~~~~~~s~tr~ 93 (209)
T 3rzn_A 14 ADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGAEWPKVGATLA 93 (209)
T ss_dssp TTCCCBHHHHHHHHTTSGGGGGGSSCGGGHHHHHHHHHHHHHHHHHHHHCTTTTSBHHHHHHHHHHHHGGGTTSSHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHhcCchhhccHHHHHHHHHHcCCcccCCchHHHH
Confidence 57899999999999999999999999 89999999999999995 689999999999999999988754 6799999
Q ss_pred HHHHHhHHHHHHHHHHHHHhCccc
Q 032653 101 LLRVKRGLDMVRVLFEQILAAEYV 124 (136)
Q Consensus 101 LLrL~RaL~Fi~~~l~~l~~~~~~ 124 (136)
||||||||+|++.||+++.+++++
T Consensus 94 LLwL~R~L~fi~~~l~~l~~~~~~ 117 (209)
T 3rzn_A 94 LMWLKRGLRFIQVFLQSICDGERD 117 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCccc
Confidence 999999999999999999987764
No 4
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=26.23 E-value=73 Score=18.34 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=12.7
Q ss_pred HHHHHHHhHhhhcCCCCCcChHHHHHHHhH
Q 032653 13 ISESFKELAATVNSQAADVELAAFSRACSY 42 (136)
Q Consensus 13 ~~~~F~~~~~~~~~~~~~I~~~~fL~a~~~ 42 (136)
+...|+.... ..++.|+.++|..+++.
T Consensus 5 l~~~F~~~D~---~~~G~i~~~el~~~l~~ 31 (78)
T 1k9u_A 5 MERIFKRFDT---NGDGKISLSELTDALRT 31 (78)
T ss_dssp HHHHHHHHCT---TCSSEECHHHHHHHHHH
T ss_pred HHHHHHHHCC---CCCCcCcHHHHHHHHHH
Confidence 4444554431 23344565555555443
No 5
>2g7r_A Mucosa-associated lymphoid tissue lymphoma transl protein 1; death domain, chromosomal translocation, hydrolase; 2.70A {Homo sapiens}
Probab=24.02 E-value=1.2e+02 Score=21.17 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=30.3
Q ss_pred ccchhHHHHHHHhHh------------cCCccCCCCchhHHHHHHh----HHHHHHHHHHHHHh
Q 032653 73 KSILTLQSVIDRDIE------------GNCVRKAGSHTRNLLRVKR----GLDMVRVLFEQILA 120 (136)
Q Consensus 73 ~~y~TL~~mv~~E~~------------~~~~~~~~S~sr~LLrL~R----aL~Fi~~~l~~l~~ 120 (136)
...+.|-+.+..+.. -+.....+|.+|.|||+.- .+..+..+|+.|..
T Consensus 43 kGWrkLAe~l~~~~~fr~S~~~l~~cslkvle~~gSPSr~LL~~~~~~g~Tl~~L~~~Lq~mg~ 106 (117)
T 2g7r_A 43 RGWRRLAELAGSRGRLRLSCLDLEQCSLKVLEPEGSPSLCLLKLMGEKGCTVTELSDFLQAMEH 106 (117)
T ss_dssp -CHHHHHHHCC------CCHHHHHHHHGGGGSTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhccccccccChHHhhhhhhhhhccCCChHHHHHHHHHHcCCcHHHHHHHHHHhcc
Confidence 555666655555433 4445566799999999863 47778888887764
No 6
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=23.82 E-value=1.3e+02 Score=18.39 Aligned_cols=37 Identities=8% Similarity=0.193 Sum_probs=25.4
Q ss_pred CCChHHHHHHHHHhHhhhcCCCCCcChHHHHHHHhHHHHH
Q 032653 7 DKPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPL 46 (136)
Q Consensus 7 ~f~l~~~~~~F~~~~~~~~~~~~~I~~~~fL~a~~~l~~~ 46 (136)
..+-..+...|+++.. ..++.|+.++|+..+..+..-
T Consensus 48 ~~~~~~v~~~~~~~D~---d~dG~I~f~EF~~~~~~l~~~ 84 (92)
T 3rm1_A 48 IKEQEVVDKVMETLDS---NGDGECDFQEFMAFVAMITTA 84 (92)
T ss_dssp CCSHHHHHHHHHHHCT---TSSSSBCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHcC---CCCCCCcHHHHHHHHHHHHHH
Confidence 3444556666666542 556789999999988877654
No 7
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=22.22 E-value=36 Score=20.21 Aligned_cols=31 Identities=10% Similarity=0.180 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHhHhhhcCCCCCcChHHHHHHHhH
Q 032653 9 PLTKISESFKELAATVNSQAADVELAAFSRACSY 42 (136)
Q Consensus 9 ~l~~~~~~F~~~~~~~~~~~~~I~~~~fL~a~~~ 42 (136)
...++...|+.... ..++.|+.+++..+++.
T Consensus 9 ~~~~l~~~F~~~D~---d~~G~i~~~el~~~l~~ 39 (86)
T 2opo_A 9 DIADRERIFKRFDT---NGDGKISSSELGDALKT 39 (86)
T ss_dssp HHHHHHHHHHHHCT---TCSSEEEHHHHHHHHHT
T ss_pred hHHHHHHHHHHHCC---CCCCCcCHHHHHHHHHH
Confidence 35566666766542 33455777776666543
No 8
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=21.18 E-value=1.1e+02 Score=20.62 Aligned_cols=41 Identities=12% Similarity=0.330 Sum_probs=27.6
Q ss_pred CChHHHHHHHHHhHhhhcCCCCCcChHHHHHHHhHHHHHHhhcC
Q 032653 8 KPLTKISESFKELAATVNSQAADVELAAFSRACSYVSPLFGCLG 51 (136)
Q Consensus 8 f~l~~~~~~F~~~~~~~~~~~~~I~~~~fL~a~~~l~~~fd~LG 51 (136)
.+-..+...|+.+.. ..++.|+.++|...+...-.++..|+
T Consensus 144 ~~~~~~~~~f~~~D~---d~dG~I~~~Ef~~~~~~~~~~~~~l~ 184 (190)
T 2l2e_A 144 TPEKRVNKIFNMMDK---NKDGQLTLEEFCEGSKRDPTIVSALS 184 (190)
T ss_dssp CTHHHHHHHHHHHTC---CSSCCBCHHHHHHHHHTCTHHHHHHH
T ss_pred cHHHHHHHHHHHhCC---CCCCcCcHHHHHHHHHhCcHHHHHHH
Confidence 344566677777652 55678999999998877655555443
No 9
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=20.28 E-value=86 Score=17.13 Aligned_cols=12 Identities=17% Similarity=0.404 Sum_probs=5.3
Q ss_pred CCcChHHHHHHH
Q 032653 29 ADVELAAFSRAC 40 (136)
Q Consensus 29 ~~I~~~~fL~a~ 40 (136)
+.|+.++|..++
T Consensus 16 G~i~~~el~~~l 27 (67)
T 1tiz_A 16 GKLSLDEFREVA 27 (67)
T ss_dssp SCEEHHHHHHHH
T ss_pred CcCcHHHHHHHH
Confidence 344444444444
No 10
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=17.55 E-value=1.7e+02 Score=17.23 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=20.8
Q ss_pred HHHHHHHHHhHhhhcCCCCCcChHHHHHHHhHHHHH
Q 032653 11 TKISESFKELAATVNSQAADVELAAFSRACSYVSPL 46 (136)
Q Consensus 11 ~~~~~~F~~~~~~~~~~~~~I~~~~fL~a~~~l~~~ 46 (136)
..+...|+.+.. ..++.|+.++|+..+..+..-
T Consensus 52 ~~~~~~~~~~D~---d~dg~i~~~eF~~~~~~~~~~ 84 (93)
T 1k2h_A 52 DAVDKIMKELDE---NGDGEVDFQEFVVLVAALTVA 84 (93)
T ss_dssp HHHHHHHHHHHH---CTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC---CCCCcCcHHHHHHHHHHHHHH
Confidence 344444555442 456779999998888776543
Done!