BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032655
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana
GN=APC6 PE=2 SV=1
Length = 543
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/155 (65%), Positives = 113/155 (72%), Gaps = 30/155 (19%)
Query: 1 MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFH 60
MREEEIEK+RG+VRDCVSKHLYSSAIFFA++VAALTNDP+D+YMQAQALFLGRHYRR FH
Sbjct: 1 MREEEIEKIRGVVRDCVSKHLYSSAIFFADKVAALTNDPSDIYMQAQALFLGRHYRRAFH 60
Query: 61 LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM----------------- 103
LLN+SKIVLRDLRFRYLAAKCLEEL+ +C +ML K+
Sbjct: 61 LLNASKIVLRDLRFRYLAAKCLEELKEWD---QCLLMLGDAKVDDDGIVYDAKDGNVIDF 117
Query: 104 ----------ISSAICFLRGKAYEALGNCAQARLW 128
ISSAICFLRGKAY AL N +QAR W
Sbjct: 118 DKDGEDREINISSAICFLRGKAYGALQNRSQARQW 152
>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16
PE=1 SV=2
Length = 620
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 27/143 (18%)
Query: 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALT-NDPADVYMQAQALFLGRHYRRPFHLLNS 64
+E+LR VR + + Y SA+F+A++VA+L+ +P D+Y AQ L+L Y R H L S
Sbjct: 3 LERLRKRVRQYLDQQQYQSALFWADKVASLSREEPQDIYWLAQCLYLTAQYHRAAHALRS 62
Query: 65 SKIVLRDLRFRYLAAKC---------------LEE----------LRSGTSVCRCSVMLR 99
K+ RYLAA+C +EE L+ + S
Sbjct: 63 RKLDKLYEACRYLAARCHYAAKEHQQALDVLDMEEPINKRLFEKYLKDESGFKDPSSDWE 122
Query: 100 LLK-MISSAICFLRGKAYEALGN 121
+ + I S+IC LRGK Y+AL N
Sbjct: 123 MSQSSIKSSICLLRGKIYDALDN 145
>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16
PE=2 SV=1
Length = 620
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 27/143 (18%)
Query: 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-PADVYMQAQALFLGRHYRRPFHLLNS 64
+E LR VR + + Y SA+F+A++VA+L+++ P DVY AQ L+L Y R H L S
Sbjct: 3 LEPLRKRVRQYLDQQQYQSALFWADKVASLSHEEPQDVYWLAQCLYLTAQYHRAAHALRS 62
Query: 65 SKIVLRDLRFRYLAAKC---------------LEE----------LRSGTSVCRCSVMLR 99
K+ RYLAA+C +EE L+ S
Sbjct: 63 RKLDKLYEACRYLAARCHYAAKEHQQALDILDMEEPINRRLFEKYLKDDNGSRDPSSDWE 122
Query: 100 LLK-MISSAICFLRGKAYEALGN 121
+ + I S+IC LRGK Y+AL N
Sbjct: 123 MSQSSIKSSICLLRGKIYDALDN 145
>sp|P09798|CDC16_YEAST Anaphase-promoting complex subunit CDC16 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CDC16 PE=1
SV=1
Length = 840
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 31/151 (20%)
Query: 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS 65
IE+LR D + +H+Y +A + A++V ++NDP D + Q + Y R L+ +
Sbjct: 230 IERLRLWRFDALMQHMYRTAEYIADKVYNISNDPDDAFWLGQVYYNNNQYVRAVELITRN 289
Query: 66 KIVLRDLRFRYLAAKCLEELR-------------------SGTSVCRCSVMLRL------ 100
+ ++ RYL +L+ S T+ S
Sbjct: 290 NLDGVNILCRYLLGLSFVKLQRFDDALDVIGEYNPFSEDPSTTAANTMSNNGNNSNTSQP 349
Query: 101 -----LKMISSAICFLRGKAYEALGNCAQAR 126
+KM S++CFLRGK Y A N +AR
Sbjct: 350 VTDGGIKM-ESSLCFLRGKIYFAQNNFNKAR 379
>sp|P41889|CUT9_SCHPO Anaphase-promoting complex subunit cut9 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cut9 PE=1 SV=2
Length = 671
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 16/134 (11%)
Query: 9 LRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIV 68
LR D + + Y A F +V +T +P D + AQ Y R LL +
Sbjct: 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY 146
Query: 69 LRDLRFRYLAAKCLEEL----------------RSGTSVCRCSVMLRLLKMISSAICFLR 112
R RYLAA CL +L R +M + +++C+LR
Sbjct: 147 NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLR 206
Query: 113 GKAYEALGNCAQAR 126
G+ Y L N +A+
Sbjct: 207 GQVYTNLSNFDRAK 220
>sp|Q1ZXE6|CDC16_DICDI Anaphase-promoting complex subunit 6 OS=Dictyostelium discoideum
GN=anapc6 PE=3 SV=1
Length = 865
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 6 IEK-LRGLVRDCVSKHLYSSAIFFANEVAALTNDPAD-----VYMQAQALFLGRHYRRPF 59
IEK L+ + + +S H Y +AIFF++++ L + +Y+ AL+L R ++R
Sbjct: 11 IEKQLKEKIENALSIHSYPTAIFFSDKLLNLVTIHSKEYVKILYILCDALYLDRQFQRSS 70
Query: 60 HLL 62
+L+
Sbjct: 71 YLI 73
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 103 MISSAICFLRGKAYEALGNCAQARLWLV 130
+I S+I L+GK YE++ N +A+ W +
Sbjct: 299 IIRSSISCLKGKCYESMDNLKKAKFWYI 326
>sp|P10505|APC3_SCHPO Anaphase-promoting complex subunit 3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=nuc2 PE=1 SV=3
Length = 665
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLN 63
++L+ L+ C+ Y ++IF++ + A+ + +Y+ A + FL Y + LL+
Sbjct: 3 DRLKCLIWYCIDNQNYDNSIFYSERLHAIEDSNESLYLLAYSHFLNLDYNIVYDLLD 59
>sp|C0MC19|Y1471_STRE4 UPF0371 protein SEQ_1471 OS=Streptococcus equi subsp. equi (strain
4047) GN=SEQ_1471 PE=3 SV=1
Length = 494
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 4 EEIEKLRGLVRDCVSKH---LYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFH 60
E ++ ++GL + + H L+++ I A + A+ N+ AD+ M+ G
Sbjct: 405 EYVKPIQGLKINHLGSHNPRLHANEILMALAITAMNNNQADLAMKELGNLKGSEAHSTVI 464
Query: 61 LLNSSKIVLRDL 72
L N K VLR L
Sbjct: 465 LTNEDKHVLRQL 476
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,374,152
Number of Sequences: 539616
Number of extensions: 1433552
Number of successful extensions: 3706
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3690
Number of HSP's gapped (non-prelim): 15
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)