Query 032655
Match_columns 136
No_of_seqs 100 out of 345
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:15:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1173 Anaphase-promoting com 99.9 1.1E-23 2.4E-28 171.5 7.7 129 6-134 16-169 (611)
2 PF12895 Apc3: Anaphase-promot 99.6 1E-15 2.2E-20 97.8 5.4 78 18-95 1-81 (84)
3 KOG1126 DNA-binding cell divis 99.3 6.5E-12 1.4E-16 104.5 9.2 120 16-135 499-620 (638)
4 PRK15359 type III secretion sy 99.3 2.4E-11 5.3E-16 85.1 8.4 106 28-135 15-121 (144)
5 TIGR00990 3a0801s09 mitochondr 99.3 1.3E-10 2.7E-15 97.9 13.5 124 12-135 337-496 (615)
6 TIGR02521 type_IV_pilW type IV 99.2 3.1E-10 6.7E-15 81.6 13.2 89 5-93 30-120 (234)
7 PF09976 TPR_21: Tetratricopep 99.2 5.2E-10 1.1E-14 78.1 13.5 121 12-133 17-145 (145)
8 TIGR02552 LcrH_SycD type III s 99.2 7.7E-11 1.7E-15 80.4 8.9 106 30-135 7-114 (135)
9 PRK15179 Vi polysaccharide bio 99.2 1.9E-10 4.2E-15 98.4 13.0 127 9-135 89-217 (694)
10 TIGR00990 3a0801s09 mitochondr 99.2 3.8E-10 8.2E-15 95.1 14.0 119 17-135 305-428 (615)
11 PRK10370 formate-dependent nit 99.2 4.5E-10 9.8E-15 82.7 10.9 117 19-135 52-173 (198)
12 TIGR02521 type_IV_pilW type IV 99.2 1.2E-09 2.7E-14 78.5 12.8 125 11-135 70-198 (234)
13 TIGR02917 PEP_TPR_lipo putativ 99.1 1.8E-09 4E-14 91.2 13.5 127 8-134 24-153 (899)
14 PRK12370 invasion protein regu 99.1 1.5E-09 3.3E-14 90.7 12.0 118 17-134 349-469 (553)
15 PRK15359 type III secretion sy 99.1 2.1E-09 4.5E-14 75.3 10.5 109 11-119 29-139 (144)
16 PRK09782 bacteriophage N4 rece 99.1 1.5E-09 3.3E-14 96.0 11.9 117 19-135 589-706 (987)
17 TIGR03302 OM_YfiO outer membra 99.0 4.7E-09 1E-13 78.0 11.7 131 5-135 32-195 (235)
18 PRK15174 Vi polysaccharide exp 99.0 4.7E-09 1E-13 89.5 13.1 120 16-135 256-381 (656)
19 PRK11189 lipoprotein NlpI; Pro 99.0 3.9E-09 8.4E-14 81.9 11.6 120 16-135 74-265 (296)
20 KOG4626 O-linked N-acetylgluco 99.0 2.1E-09 4.7E-14 90.0 10.4 118 18-135 298-417 (966)
21 TIGR02917 PEP_TPR_lipo putativ 99.0 7.7E-09 1.7E-13 87.5 13.2 125 11-135 538-664 (899)
22 PF13429 TPR_15: Tetratricopep 99.0 1.8E-09 3.9E-14 82.5 8.0 126 10-135 150-277 (280)
23 PRK15174 Vi polysaccharide exp 99.0 7.9E-09 1.7E-13 88.1 11.9 126 8-133 44-171 (656)
24 PRK12370 invasion protein regu 99.0 5E-09 1.1E-13 87.6 10.5 115 20-134 318-434 (553)
25 PRK15179 Vi polysaccharide bio 99.0 1.4E-08 3.1E-13 87.0 13.0 132 3-134 49-182 (694)
26 PRK15363 pathogenicity island 98.9 6E-09 1.3E-13 74.1 8.0 92 3-94 32-125 (157)
27 PRK11447 cellulose synthase su 98.9 2E-08 4.3E-13 90.3 13.0 122 14-135 277-414 (1157)
28 KOG1155 Anaphase-promoting com 98.9 1.4E-08 3.1E-13 82.5 10.6 121 14-134 372-494 (559)
29 PF12895 Apc3: Anaphase-promot 98.9 2.7E-09 5.9E-14 67.7 5.2 80 52-132 2-84 (84)
30 PRK15363 pathogenicity island 98.9 5.5E-08 1.2E-12 69.2 12.1 104 32-135 26-132 (157)
31 PRK11189 lipoprotein NlpI; Pro 98.9 2.4E-08 5.3E-13 77.4 10.8 116 20-135 40-161 (296)
32 PRK11788 tetratricopeptide rep 98.9 7E-08 1.5E-12 76.2 13.6 50 13-62 114-164 (389)
33 PRK11788 tetratricopeptide rep 98.9 5.5E-08 1.2E-12 76.8 12.8 119 15-134 189-310 (389)
34 PLN03088 SGT1, suppressor of 98.9 2.3E-08 4.9E-13 79.7 10.4 113 8-120 4-118 (356)
35 TIGR02552 LcrH_SycD type III s 98.9 4.7E-08 1E-12 66.5 10.2 90 7-96 18-109 (135)
36 COG3063 PilF Tfp pilus assembl 98.8 1.6E-07 3.4E-12 70.6 12.5 133 3-135 32-168 (250)
37 TIGR03302 OM_YfiO outer membra 98.8 1.2E-07 2.6E-12 70.3 12.1 121 13-133 77-230 (235)
38 PRK09782 bacteriophage N4 rece 98.8 5.8E-08 1.3E-12 86.1 11.7 125 12-136 615-741 (987)
39 KOG4626 O-linked N-acetylgluco 98.8 5.5E-08 1.2E-12 81.7 10.7 117 19-135 333-485 (966)
40 PLN03088 SGT1, suppressor of 98.8 3E-08 6.5E-13 79.0 8.9 95 41-135 4-99 (356)
41 TIGR02795 tol_pal_ybgF tol-pal 98.8 5E-08 1.1E-12 64.3 8.5 96 39-134 2-104 (119)
42 KOG0553 TPR repeat-containing 98.8 6.1E-08 1.3E-12 75.0 9.0 96 40-135 82-178 (304)
43 PF13414 TPR_11: TPR repeat; P 98.8 2.4E-08 5.2E-13 60.7 5.4 64 72-135 3-67 (69)
44 KOG1173 Anaphase-promoting com 98.7 5.9E-08 1.3E-12 80.3 8.9 121 15-135 389-518 (611)
45 PRK11447 cellulose synthase su 98.7 2.3E-07 5.1E-12 83.5 13.5 123 12-134 609-739 (1157)
46 cd00189 TPR Tetratricopeptide 98.7 8.2E-08 1.8E-12 58.6 7.2 94 42-135 3-97 (100)
47 PF13429 TPR_15: Tetratricopep 98.7 4.1E-08 8.8E-13 75.0 6.6 125 9-134 81-242 (280)
48 PRK10747 putative protoheme IX 98.7 3.6E-07 7.8E-12 73.6 12.1 122 11-135 268-390 (398)
49 PRK10049 pgaA outer membrane p 98.7 3.9E-07 8.4E-12 79.0 12.8 126 8-134 17-144 (765)
50 PRK10049 pgaA outer membrane p 98.7 4.5E-07 9.7E-12 78.6 12.6 125 9-134 52-178 (765)
51 PRK10370 formate-dependent nit 98.6 7.2E-07 1.6E-11 65.6 11.6 86 14-99 81-171 (198)
52 KOG1155 Anaphase-promoting com 98.6 4.5E-07 9.8E-12 73.9 10.4 117 19-135 343-461 (559)
53 COG4783 Putative Zn-dependent 98.6 1.2E-06 2.5E-11 71.6 12.0 122 14-135 314-437 (484)
54 PRK02603 photosystem I assembl 98.6 7.8E-07 1.7E-11 63.6 10.0 95 27-121 17-121 (172)
55 PF14559 TPR_19: Tetratricopep 98.6 1.9E-07 4.1E-12 56.4 5.6 64 17-80 2-67 (68)
56 KOG1126 DNA-binding cell divis 98.5 1.5E-07 3.3E-12 78.8 6.0 116 20-135 435-552 (638)
57 PLN02789 farnesyltranstransfer 98.5 1.7E-06 3.8E-11 68.2 11.7 129 4-135 38-171 (320)
58 PRK15331 chaperone protein Sic 98.5 7.4E-07 1.6E-11 63.9 8.5 90 39-133 37-132 (165)
59 PF13424 TPR_12: Tetratricopep 98.5 2.3E-07 5E-12 57.7 4.8 64 72-135 5-75 (78)
60 PF13432 TPR_16: Tetratricopep 98.5 7.7E-07 1.7E-11 53.5 6.4 60 76-135 1-60 (65)
61 PRK10803 tol-pal system protei 98.5 1.7E-06 3.7E-11 66.5 9.7 96 39-134 142-245 (263)
62 PRK15331 chaperone protein Sic 98.5 1.9E-06 4.2E-11 61.7 9.0 98 2-99 33-132 (165)
63 cd05804 StaR_like StaR_like; a 98.5 6.8E-06 1.5E-10 64.2 13.0 90 45-134 120-214 (355)
64 cd00189 TPR Tetratricopeptide 98.4 1.5E-06 3.3E-11 52.8 7.5 86 10-95 4-91 (100)
65 COG5010 TadD Flp pilus assembl 98.4 2.1E-06 4.5E-11 65.3 9.4 113 23-135 50-163 (257)
66 KOG1129 TPR repeat-containing 98.4 6.8E-06 1.5E-10 65.0 11.8 98 38-135 219-319 (478)
67 PF12569 NARP1: NMDA receptor- 98.4 9.2E-06 2E-10 67.8 13.2 131 5-135 193-334 (517)
68 PRK14720 transcript cleavage f 98.4 5.6E-06 1.2E-10 72.7 12.4 127 6-134 31-177 (906)
69 PRK10747 putative protoheme IX 98.4 6.2E-06 1.3E-10 66.5 11.5 123 13-135 160-357 (398)
70 TIGR00540 hemY_coli hemY prote 98.4 9.7E-06 2.1E-10 65.5 12.5 125 10-135 267-399 (409)
71 KOG2376 Signal recognition par 98.4 5E-06 1.1E-10 69.4 10.8 127 5-134 11-138 (652)
72 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 9.2E-06 2E-10 65.7 12.0 119 11-131 174-293 (395)
73 TIGR02795 tol_pal_ybgF tol-pal 98.3 6.3E-06 1.4E-10 54.1 8.7 89 8-96 4-100 (119)
74 PRK14574 hmsH outer membrane p 98.3 1.8E-05 3.9E-10 69.4 13.8 122 11-133 39-163 (822)
75 CHL00033 ycf3 photosystem I as 98.3 4.2E-06 9.2E-11 59.4 8.1 96 39-134 35-141 (168)
76 PF13432 TPR_16: Tetratricopep 98.3 1.6E-06 3.4E-11 52.1 4.2 53 13-65 4-57 (65)
77 KOG0548 Molecular co-chaperone 98.3 9.6E-06 2.1E-10 67.0 9.9 113 23-135 341-455 (539)
78 PRK10153 DNA-binding transcrip 98.2 1.9E-05 4.2E-10 65.9 11.6 114 21-135 357-482 (517)
79 COG2956 Predicted N-acetylgluc 98.2 3.3E-05 7.1E-10 60.9 11.7 128 8-135 143-278 (389)
80 PF13371 TPR_9: Tetratricopept 98.2 3.6E-06 7.7E-11 51.5 5.2 64 14-77 3-68 (73)
81 KOG1129 TPR repeat-containing 98.2 1.5E-06 3.3E-11 68.6 4.2 121 14-134 298-423 (478)
82 cd05804 StaR_like StaR_like; a 98.2 2.8E-05 6.1E-10 60.7 11.4 120 15-135 52-177 (355)
83 KOG1840 Kinesin light chain [C 98.2 2.7E-05 5.9E-10 64.8 11.7 131 5-135 198-354 (508)
84 KOG2003 TPR repeat-containing 98.2 3.1E-06 6.7E-11 69.4 5.9 116 20-135 470-587 (840)
85 KOG1840 Kinesin light chain [C 98.2 4.7E-05 1E-09 63.5 12.5 125 11-135 246-396 (508)
86 PRK10803 tol-pal system protei 98.2 3.7E-05 7.9E-10 59.1 11.1 89 9-97 146-242 (263)
87 TIGR00540 hemY_coli hemY prote 98.1 4.3E-05 9.3E-10 61.7 11.5 119 17-135 95-216 (409)
88 COG5010 TadD Flp pilus assembl 98.1 7.8E-05 1.7E-09 56.8 11.9 119 9-127 103-223 (257)
89 PLN02789 farnesyltranstransfer 98.1 5.2E-05 1.1E-09 59.8 11.4 126 9-135 76-212 (320)
90 PRK02603 photosystem I assembl 98.1 0.00011 2.4E-09 52.4 12.2 85 8-92 37-126 (172)
91 PF13525 YfiO: Outer membrane 98.1 5.5E-05 1.2E-09 55.7 10.9 129 6-134 5-169 (203)
92 PF13414 TPR_11: TPR repeat; P 98.1 2.9E-06 6.3E-11 51.4 3.4 56 39-94 3-60 (69)
93 KOG0553 TPR repeat-containing 98.1 4.7E-05 1E-09 59.2 10.6 91 5-95 80-172 (304)
94 PF12688 TPR_5: Tetratrico pep 98.1 6.1E-05 1.3E-09 51.4 10.1 104 13-132 8-119 (120)
95 COG1729 Uncharacterized protei 98.1 4E-05 8.7E-10 58.7 9.9 93 42-134 144-243 (262)
96 KOG0547 Translocase of outer m 98.1 1.6E-05 3.4E-10 65.5 8.0 120 16-135 370-491 (606)
97 COG4783 Putative Zn-dependent 98.1 7.2E-05 1.6E-09 61.3 11.6 82 12-93 346-429 (484)
98 KOG4162 Predicted calmodulin-b 98.1 5.7E-05 1.2E-09 64.8 11.3 119 15-135 659-783 (799)
99 PF14559 TPR_19: Tetratricopep 98.1 7.9E-06 1.7E-10 49.2 4.4 67 49-115 1-68 (68)
100 KOG2002 TPR-containing nuclear 98.0 7.1E-05 1.5E-09 65.6 11.4 116 20-135 213-336 (1018)
101 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 1.3E-05 2.8E-10 65.5 6.6 67 69-135 72-141 (453)
102 PF09976 TPR_21: Tetratricopep 98.0 5E-05 1.1E-09 52.8 8.8 83 12-94 54-140 (145)
103 KOG2076 RNA polymerase III tra 98.0 0.00014 3E-09 63.3 12.9 119 17-135 150-270 (895)
104 PRK14574 hmsH outer membrane p 98.0 8.7E-05 1.9E-09 65.1 11.9 124 11-135 73-198 (822)
105 PF12688 TPR_5: Tetratrico pep 98.0 4.6E-05 9.9E-10 52.0 8.2 96 39-134 1-103 (120)
106 CHL00033 ycf3 photosystem I as 98.0 7.7E-05 1.7E-09 52.9 9.4 88 6-93 35-134 (168)
107 PRK10866 outer membrane biogen 98.0 0.00041 8.8E-09 52.7 13.6 126 9-134 35-203 (243)
108 PF13525 YfiO: Outer membrane 98.0 4.3E-05 9.3E-10 56.2 7.9 96 38-133 4-117 (203)
109 PF00515 TPR_1: Tetratricopept 98.0 1.5E-05 3.2E-10 41.8 3.7 30 106-135 1-30 (34)
110 KOG1125 TPR repeat-containing 97.9 6.1E-05 1.3E-09 62.8 8.8 119 16-134 295-458 (579)
111 KOG0547 Translocase of outer m 97.9 7.8E-05 1.7E-09 61.5 8.8 122 14-135 402-566 (606)
112 KOG2376 Signal recognition par 97.9 0.00018 3.9E-09 60.4 10.9 123 9-135 49-204 (652)
113 KOG1125 TPR repeat-containing 97.9 2.2E-05 4.8E-10 65.4 5.3 98 38-135 429-527 (579)
114 COG1729 Uncharacterized protei 97.9 0.00022 4.7E-09 54.8 10.1 87 10-96 145-239 (262)
115 KOG2002 TPR-containing nuclear 97.8 0.00017 3.6E-09 63.3 10.2 127 8-135 344-481 (1018)
116 KOG1174 Anaphase-promoting com 97.8 0.00029 6.3E-09 57.3 10.9 129 6-135 368-500 (564)
117 KOG3785 Uncharacterized conser 97.8 0.00021 4.6E-09 57.3 9.8 80 13-92 29-111 (557)
118 KOG0543 FKBP-type peptidyl-pro 97.8 4.3E-05 9.3E-10 61.4 5.9 94 42-135 211-320 (397)
119 KOG2076 RNA polymerase III tra 97.8 0.0003 6.5E-09 61.3 11.4 122 3-124 411-544 (895)
120 PF13181 TPR_8: Tetratricopept 97.8 3.6E-05 7.7E-10 40.2 3.7 30 106-135 1-30 (34)
121 PF13512 TPR_18: Tetratricopep 97.8 0.00032 7E-09 49.2 9.5 84 38-121 9-99 (142)
122 KOG3060 Uncharacterized conser 97.8 0.00079 1.7E-08 51.6 12.1 125 10-134 56-182 (289)
123 KOG0548 Molecular co-chaperone 97.8 9.7E-05 2.1E-09 61.2 7.3 92 44-135 7-99 (539)
124 KOG0550 Molecular chaperone (D 97.8 0.00022 4.7E-09 57.9 8.9 116 20-135 217-350 (486)
125 PF07719 TPR_2: Tetratricopept 97.7 6.1E-05 1.3E-09 39.1 3.7 30 106-135 1-30 (34)
126 PF04049 APC8: Anaphase promot 97.7 0.00035 7.5E-09 49.1 8.3 84 3-90 7-121 (142)
127 KOG0624 dsRNA-activated protei 97.7 0.0013 2.8E-08 52.7 12.2 86 7-92 156-243 (504)
128 PF13176 TPR_7: Tetratricopept 97.7 6.4E-05 1.4E-09 40.3 3.5 27 109-135 2-28 (36)
129 KOG0495 HAT repeat protein [RN 97.7 0.00081 1.8E-08 57.5 11.5 117 18-134 562-713 (913)
130 PF13371 TPR_9: Tetratricopept 97.7 0.00011 2.3E-09 44.8 4.9 54 46-99 2-56 (73)
131 COG4235 Cytochrome c biogenesi 97.6 0.00062 1.3E-08 52.9 9.3 122 14-135 130-256 (287)
132 KOG4234 TPR repeat-containing 97.6 0.00031 6.7E-09 52.4 6.9 92 44-135 100-197 (271)
133 PLN03081 pentatricopeptide (PP 97.6 0.0013 2.8E-08 56.5 11.8 123 10-132 395-554 (697)
134 PRK10866 outer membrane biogen 97.6 0.00063 1.4E-08 51.6 8.9 83 38-120 31-120 (243)
135 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.00037 8E-09 56.5 8.0 81 12-92 206-288 (395)
136 PF13512 TPR_18: Tetratricopep 97.5 0.0008 1.7E-08 47.2 8.2 81 7-87 11-99 (142)
137 KOG1174 Anaphase-promoting com 97.5 0.0015 3.1E-08 53.4 10.2 132 4-135 196-363 (564)
138 KOG1156 N-terminal acetyltrans 97.5 0.00017 3.7E-09 61.0 4.9 119 8-127 10-130 (700)
139 COG3063 PilF Tfp pilus assembl 97.5 0.0025 5.4E-08 48.2 10.6 78 16-93 79-160 (250)
140 PLN03218 maturation of RBCL 1; 97.5 0.0032 6.9E-08 56.9 13.1 84 9-92 545-634 (1060)
141 KOG1127 TPR repeat-containing 97.5 0.0005 1.1E-08 60.8 7.5 120 15-134 571-699 (1238)
142 PF13431 TPR_17: Tetratricopep 97.4 0.00012 2.5E-09 38.9 2.4 31 29-59 2-33 (34)
143 PRK14720 transcript cleavage f 97.4 0.00074 1.6E-08 59.7 8.6 102 34-135 25-145 (906)
144 COG2976 Uncharacterized protei 97.4 0.0066 1.4E-07 44.9 12.3 119 15-135 62-188 (207)
145 PLN03218 maturation of RBCL 1; 97.4 0.0051 1.1E-07 55.6 13.1 84 9-92 510-599 (1060)
146 COG4105 ComL DNA uptake lipopr 97.4 0.014 3.1E-07 44.6 13.7 82 6-87 34-123 (254)
147 KOG4340 Uncharacterized conser 97.3 0.00076 1.7E-08 53.1 6.8 125 11-135 15-173 (459)
148 PLN03081 pentatricopeptide (PP 97.3 0.0023 4.9E-08 55.0 10.3 82 10-93 263-346 (697)
149 PF14938 SNAP: Soluble NSF att 97.3 0.0032 6.9E-08 48.5 10.2 131 3-134 32-183 (282)
150 PF04733 Coatomer_E: Coatomer 97.3 0.0049 1.1E-07 48.0 11.2 126 7-133 132-262 (290)
151 PF03704 BTAD: Bacterial trans 97.3 0.0016 3.4E-08 45.0 7.6 63 3-65 59-122 (146)
152 PLN03077 Protein ECB2; Provisi 97.3 0.0066 1.4E-07 53.3 13.1 123 9-131 557-716 (857)
153 COG3071 HemY Uncharacterized e 97.3 0.0062 1.3E-07 49.1 11.5 124 9-135 266-390 (400)
154 PLN03077 Protein ECB2; Provisi 97.2 0.006 1.3E-07 53.6 11.9 118 11-131 529-650 (857)
155 PRK11906 transcriptional regul 97.2 0.0048 1E-07 50.8 10.3 113 23-135 275-401 (458)
156 PRK11906 transcriptional regul 97.2 0.0058 1.3E-07 50.3 10.3 89 20-108 318-410 (458)
157 KOG2003 TPR repeat-containing 97.2 0.019 4.2E-07 47.7 13.2 118 15-132 533-686 (840)
158 KOG1156 N-terminal acetyltrans 97.2 0.0035 7.6E-08 53.3 9.1 97 36-135 4-104 (700)
159 KOG1128 Uncharacterized conser 97.1 0.0013 2.8E-08 56.5 6.4 95 42-136 488-583 (777)
160 PF14938 SNAP: Soluble NSF att 97.1 0.0014 3.1E-08 50.4 6.2 91 44-135 40-144 (282)
161 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.0011 2.3E-08 54.4 5.6 53 40-92 76-132 (453)
162 KOG4555 TPR repeat-containing 97.1 0.0043 9.3E-08 43.5 7.8 93 42-134 46-143 (175)
163 COG3071 HemY Uncharacterized e 97.1 0.022 4.7E-07 46.1 12.8 128 8-135 155-357 (400)
164 KOG4648 Uncharacterized conser 97.1 0.0019 4.1E-08 51.8 6.7 92 42-135 100-194 (536)
165 COG4700 Uncharacterized protei 97.0 0.017 3.7E-07 42.8 10.7 112 17-130 100-217 (251)
166 PF09613 HrpB1_HrpK: Bacterial 97.0 0.0098 2.1E-07 42.6 9.3 86 3-88 7-94 (160)
167 PF04733 Coatomer_E: Coatomer 97.0 0.0051 1.1E-07 47.9 8.4 89 6-94 167-257 (290)
168 COG2956 Predicted N-acetylgluc 97.0 0.017 3.7E-07 45.9 11.1 90 4-93 178-270 (389)
169 PRK04841 transcriptional regul 97.0 0.011 2.3E-07 51.9 10.9 119 16-134 462-601 (903)
170 PF13424 TPR_12: Tetratricopep 96.9 0.0039 8.6E-08 38.3 6.0 52 42-93 8-67 (78)
171 KOG0550 Molecular chaperone (D 96.9 0.003 6.6E-08 51.4 6.5 63 73-135 170-232 (486)
172 TIGR02561 HrpB1_HrpK type III 96.9 0.014 3E-07 41.4 9.0 86 3-88 7-94 (153)
173 KOG0624 dsRNA-activated protei 96.9 0.0051 1.1E-07 49.4 7.4 97 38-134 37-134 (504)
174 smart00028 TPR Tetratricopepti 96.9 0.0017 3.6E-08 31.6 3.3 29 107-135 2-30 (34)
175 COG4235 Cytochrome c biogenesi 96.8 0.0064 1.4E-07 47.3 7.1 84 14-97 164-252 (287)
176 KOG3785 Uncharacterized conser 96.8 0.045 9.7E-07 44.3 11.9 85 4-91 54-140 (557)
177 KOG3060 Uncharacterized conser 96.7 0.021 4.6E-07 43.9 9.5 115 18-136 98-221 (289)
178 KOG1130 Predicted G-alpha GTPa 96.7 0.0011 2.5E-08 54.1 2.6 30 105-134 314-343 (639)
179 KOG4162 Predicted calmodulin-b 96.7 0.007 1.5E-07 52.4 7.3 114 20-133 458-574 (799)
180 KOG2053 Mitochondrial inherita 96.7 0.029 6.3E-07 49.4 11.0 90 5-94 8-99 (932)
181 PF10300 DUF3808: Protein of u 96.7 0.028 6.1E-07 46.6 10.6 113 21-133 248-374 (468)
182 PF13281 DUF4071: Domain of un 96.6 0.044 9.5E-07 44.3 11.1 98 38-135 140-255 (374)
183 KOG4642 Chaperone-dependent E3 96.6 0.0066 1.4E-07 46.4 6.0 93 4-96 8-102 (284)
184 PF13428 TPR_14: Tetratricopep 96.6 0.0068 1.5E-07 33.5 4.7 37 11-47 6-43 (44)
185 COG4700 Uncharacterized protei 96.6 0.13 2.7E-06 38.4 12.4 117 19-135 69-189 (251)
186 PF12569 NARP1: NMDA receptor- 96.6 0.026 5.6E-07 47.5 9.8 86 42-129 197-285 (517)
187 PF13428 TPR_14: Tetratricopep 96.5 0.0023 5.1E-08 35.5 2.5 42 39-80 1-43 (44)
188 COG0457 NrfG FOG: TPR repeat [ 96.5 0.14 3E-06 34.7 12.5 125 10-134 63-195 (291)
189 KOG1130 Predicted G-alpha GTPa 96.5 0.0076 1.6E-07 49.5 5.9 95 41-135 197-304 (639)
190 PRK04841 transcriptional regul 96.4 0.051 1.1E-06 47.7 11.0 120 15-134 500-640 (903)
191 PF13374 TPR_10: Tetratricopep 96.4 0.0073 1.6E-07 32.2 3.7 30 106-135 2-31 (42)
192 KOG0543 FKBP-type peptidyl-pro 96.3 0.073 1.6E-06 43.2 10.5 85 14-98 216-317 (397)
193 PF10516 SHNi-TPR: SHNi-TPR; 96.1 0.0085 1.8E-07 32.6 3.1 30 106-135 1-30 (38)
194 PF07719 TPR_2: Tetratricopept 96.1 0.0082 1.8E-07 30.7 2.9 27 39-65 1-27 (34)
195 KOG4642 Chaperone-dependent E3 96.1 0.024 5.2E-07 43.3 6.3 97 39-135 10-107 (284)
196 PF03704 BTAD: Bacterial trans 96.0 0.076 1.6E-06 36.4 8.3 108 13-133 13-123 (146)
197 COG3118 Thioredoxin domain-con 96.0 0.32 7E-06 38.1 12.4 113 18-134 146-264 (304)
198 KOG4340 Uncharacterized conser 96.0 0.019 4.2E-07 45.4 5.7 100 31-130 133-265 (459)
199 PF13174 TPR_6: Tetratricopept 96.0 0.01 2.2E-07 30.1 2.9 27 108-134 2-28 (33)
200 PF12968 DUF3856: Domain of Un 95.9 0.16 3.4E-06 35.1 9.0 64 71-134 54-128 (144)
201 COG4105 ComL DNA uptake lipopr 95.9 0.061 1.3E-06 41.2 7.8 81 38-118 33-120 (254)
202 KOG0545 Aryl-hydrocarbon recep 95.8 0.049 1.1E-06 42.0 6.9 94 42-135 181-293 (329)
203 COG0457 NrfG FOG: TPR repeat [ 95.7 0.36 7.8E-06 32.6 12.0 116 19-134 36-158 (291)
204 PF09986 DUF2225: Uncharacteri 95.7 0.059 1.3E-06 40.2 7.1 31 104-134 163-193 (214)
205 KOG1128 Uncharacterized conser 95.6 0.073 1.6E-06 46.1 8.1 119 10-135 402-548 (777)
206 KOG0495 HAT repeat protein [RN 95.4 0.33 7.2E-06 42.1 11.0 122 14-135 524-680 (913)
207 PF12862 Apc5: Anaphase-promot 95.1 0.14 3.1E-06 32.9 6.7 57 79-135 5-70 (94)
208 PF06552 TOM20_plant: Plant sp 95.1 0.036 7.8E-07 40.5 4.0 69 20-88 5-85 (186)
209 KOG2053 Mitochondrial inherita 95.0 0.064 1.4E-06 47.3 6.0 85 50-134 20-105 (932)
210 PF00515 TPR_1: Tetratricopept 95.0 0.037 8.1E-07 28.4 2.9 26 40-65 2-27 (34)
211 PF04184 ST7: ST7 protein; In 94.9 0.78 1.7E-05 38.5 11.7 91 45-135 265-375 (539)
212 KOG2471 TPR repeat-containing 94.9 0.11 2.3E-06 43.7 6.6 98 37-134 238-363 (696)
213 PRK10153 DNA-binding transcrip 94.7 0.093 2E-06 44.1 6.1 77 20-96 398-477 (517)
214 PRK10941 hypothetical protein; 94.7 0.24 5.2E-06 38.3 7.9 71 8-78 183-255 (269)
215 KOG2610 Uncharacterized conser 94.4 0.34 7.4E-06 39.1 8.2 80 17-96 186-271 (491)
216 KOG0551 Hsp90 co-chaperone CNS 94.3 0.21 4.6E-06 39.9 6.9 87 7-93 82-174 (390)
217 PF04781 DUF627: Protein of un 94.3 0.27 5.8E-06 33.1 6.4 91 46-136 3-108 (111)
218 PF13174 TPR_6: Tetratricopept 93.9 0.051 1.1E-06 27.3 2.0 24 41-64 2-25 (33)
219 PF13431 TPR_17: Tetratricopep 93.7 0.06 1.3E-06 28.2 2.0 24 103-126 10-33 (34)
220 PF15015 NYD-SP12_N: Spermatog 93.5 0.18 3.9E-06 41.6 5.3 77 16-92 193-282 (569)
221 KOG3617 WD40 and TPR repeat-co 93.5 1.1 2.5E-05 40.1 10.3 130 1-133 815-994 (1416)
222 KOG2300 Uncharacterized conser 93.3 1.2 2.6E-05 37.5 9.8 119 15-133 376-512 (629)
223 COG4785 NlpI Lipoprotein NlpI, 93.3 0.72 1.6E-05 35.2 7.8 118 17-134 76-265 (297)
224 PF08631 SPO22: Meiosis protei 93.0 3.3 7.1E-05 31.8 11.9 92 3-94 32-143 (278)
225 PF07079 DUF1347: Protein of u 92.9 0.99 2.1E-05 37.7 8.7 48 18-65 474-521 (549)
226 KOG1308 Hsp70-interacting prot 92.6 0.069 1.5E-06 42.7 1.7 87 48-134 123-210 (377)
227 PF10300 DUF3808: Protein of u 92.6 0.3 6.5E-06 40.5 5.6 75 14-88 275-356 (468)
228 KOG4555 TPR repeat-containing 92.6 0.38 8.2E-06 33.9 5.1 62 74-135 45-106 (175)
229 KOG1550 Extracellular protein 92.5 1.6 3.4E-05 37.0 9.8 111 20-133 263-391 (552)
230 KOG0376 Serine-threonine phosp 92.5 0.099 2.2E-06 43.3 2.6 84 9-92 7-92 (476)
231 PF07720 TPR_3: Tetratricopept 92.5 0.22 4.7E-06 26.7 3.1 25 39-63 1-25 (36)
232 PF14863 Alkyl_sulf_dimr: Alky 92.4 0.2 4.4E-06 35.1 3.7 69 24-92 55-124 (141)
233 KOG1585 Protein required for f 92.4 2.2 4.7E-05 33.1 9.4 81 4-93 89-171 (308)
234 PF13181 TPR_8: Tetratricopept 92.3 0.22 4.9E-06 25.2 3.0 25 40-64 2-26 (34)
235 PF12739 TRAPPC-Trs85: ER-Golg 92.3 4.9 0.00011 32.8 12.1 133 3-135 205-399 (414)
236 KOG2610 Uncharacterized conser 92.0 3.4 7.4E-05 33.5 10.5 111 20-130 117-233 (491)
237 KOG4648 Uncharacterized conser 91.8 0.18 3.8E-06 40.8 3.1 119 15-134 24-159 (536)
238 KOG1127 TPR repeat-containing 91.8 1.3 2.9E-05 40.1 8.7 122 12-133 532-657 (1238)
239 KOG4234 TPR repeat-containing 91.6 1.4 3.1E-05 33.2 7.5 81 14-94 103-190 (271)
240 PF13176 TPR_7: Tetratricopept 91.4 0.27 5.9E-06 25.8 2.7 23 42-64 2-24 (36)
241 PF14853 Fis1_TPR_C: Fis1 C-te 91.4 0.29 6.3E-06 28.5 3.0 23 42-64 4-26 (53)
242 KOG3081 Vesicle coat complex C 91.4 2.9 6.3E-05 32.6 9.2 83 11-93 178-262 (299)
243 KOG3364 Membrane protein invol 91.3 2 4.3E-05 30.2 7.5 58 36-93 29-92 (149)
244 PF08631 SPO22: Meiosis protei 91.2 2 4.3E-05 33.0 8.4 117 16-132 3-147 (278)
245 PF04910 Tcf25: Transcriptiona 91.1 1.9 4.1E-05 34.7 8.5 80 9-88 106-194 (360)
246 COG2912 Uncharacterized conser 91.0 0.98 2.1E-05 35.0 6.4 77 3-79 177-256 (269)
247 PF04053 Coatomer_WDAD: Coatom 90.9 3 6.5E-05 34.6 9.6 28 105-132 346-373 (443)
248 PF02259 FAT: FAT domain; Int 90.9 3.5 7.5E-05 31.8 9.6 97 39-135 146-287 (352)
249 PF04212 MIT: MIT (microtubule 90.7 0.59 1.3E-05 28.2 4.1 27 109-135 8-34 (69)
250 KOG1586 Protein required for f 90.5 1.4 3.1E-05 33.8 6.7 61 73-133 74-141 (288)
251 PF14853 Fis1_TPR_C: Fis1 C-te 90.4 0.88 1.9E-05 26.4 4.4 24 73-96 2-25 (53)
252 cd02682 MIT_AAA_Arch MIT: doma 90.3 0.46 1E-05 29.8 3.4 31 105-135 5-35 (75)
253 PF07721 TPR_4: Tetratricopept 90.3 0.54 1.2E-05 22.8 3.0 23 41-63 3-25 (26)
254 KOG4507 Uncharacterized conser 89.8 0.89 1.9E-05 39.2 5.6 87 50-136 618-706 (886)
255 PF10255 Paf67: RNA polymerase 89.4 0.7 1.5E-05 37.8 4.6 52 42-93 125-185 (404)
256 PF14561 TPR_20: Tetratricopep 89.4 0.67 1.5E-05 29.8 3.7 34 29-62 11-45 (90)
257 KOG4279 Serine/threonine prote 89.1 0.39 8.4E-06 42.4 3.1 98 38-135 200-316 (1226)
258 KOG1550 Extracellular protein 88.9 4.4 9.5E-05 34.4 9.3 107 25-134 230-356 (552)
259 KOG3616 Selective LIM binding 88.8 2.2 4.8E-05 38.0 7.4 110 13-131 564-686 (1636)
260 COG2976 Uncharacterized protei 88.3 3.1 6.8E-05 30.9 7.0 86 12-97 95-184 (207)
261 PF07721 TPR_4: Tetratricopept 88.2 0.99 2.2E-05 21.9 3.1 22 109-130 4-25 (26)
262 KOG0376 Serine-threonine phosp 87.9 0.48 1E-05 39.4 2.8 91 45-135 10-101 (476)
263 PRK15180 Vi polysaccharide bio 87.9 4.8 0.0001 34.2 8.5 84 12-95 295-380 (831)
264 KOG1585 Protein required for f 87.6 2.7 5.8E-05 32.6 6.5 93 42-135 34-139 (308)
265 PF13374 TPR_10: Tetratricopep 86.9 0.97 2.1E-05 23.5 2.9 24 41-64 4-27 (42)
266 KOG1941 Acetylcholine receptor 86.2 5.9 0.00013 32.5 7.9 122 13-134 129-274 (518)
267 cd02679 MIT_spastin MIT: domai 86.0 1 2.2E-05 28.4 3.0 31 105-135 7-37 (79)
268 PF10579 Rapsyn_N: Rapsyn N-te 85.7 5.4 0.00012 25.3 6.1 57 4-61 5-65 (80)
269 COG0790 FOG: TPR repeat, SEL1 85.5 14 0.0003 28.0 10.5 111 21-134 92-219 (292)
270 COG3947 Response regulator con 85.0 3.1 6.7E-05 33.0 5.7 87 5-91 243-332 (361)
271 smart00671 SEL1 Sel1-like repe 84.9 2 4.3E-05 21.7 3.4 27 108-134 3-33 (36)
272 COG3898 Uncharacterized membra 84.7 22 0.00047 29.6 13.6 132 3-134 151-391 (531)
273 KOG3081 Vesicle coat complex C 84.4 18 0.00039 28.4 10.4 43 52-94 186-229 (299)
274 PF09613 HrpB1_HrpK: Bacterial 84.3 3.3 7.1E-05 29.7 5.2 74 13-91 51-128 (160)
275 PF08238 Sel1: Sel1 repeat; I 84.3 2.1 4.6E-05 22.1 3.4 28 107-134 2-36 (39)
276 cd02681 MIT_calpain7_1 MIT: do 83.7 1.9 4E-05 27.0 3.4 26 110-135 10-35 (76)
277 cd02683 MIT_1 MIT: domain cont 83.6 1.7 3.7E-05 27.2 3.2 27 109-135 9-35 (77)
278 COG3629 DnrI DNA-binding trans 83.5 8 0.00017 30.2 7.5 63 3-65 150-213 (280)
279 PF11846 DUF3366: Domain of un 83.0 3.2 6.9E-05 29.9 4.9 47 20-66 125-171 (193)
280 PF10037 MRP-S27: Mitochondria 83.0 5.6 0.00012 32.9 6.8 55 10-64 107-163 (429)
281 PF14863 Alkyl_sulf_dimr: Alky 82.8 3.7 8E-05 28.7 4.9 48 7-54 71-119 (141)
282 KOG1941 Acetylcholine receptor 82.6 5.9 0.00013 32.5 6.5 124 12-135 49-191 (518)
283 PF07079 DUF1347: Protein of u 81.6 1.4 3E-05 36.8 2.8 51 46-96 469-519 (549)
284 smart00745 MIT Microtubule Int 81.3 3.2 7E-05 25.4 3.8 26 110-135 12-37 (77)
285 TIGR02561 HrpB1_HrpK type III 81.0 4.8 0.0001 28.6 5.0 52 13-64 51-106 (153)
286 PF02151 UVR: UvrB/uvrC motif; 80.9 5.8 0.00012 20.9 4.2 33 3-35 1-33 (36)
287 KOG3364 Membrane protein invol 80.8 2 4.3E-05 30.2 2.9 46 20-65 49-97 (149)
288 PF10602 RPN7: 26S proteasome 80.5 19 0.00041 25.9 10.4 92 42-133 39-140 (177)
289 PF04840 Vps16_C: Vps16, C-ter 80.1 28 0.0006 27.6 11.3 77 9-93 180-258 (319)
290 PF12854 PPR_1: PPR repeat 79.6 4.1 8.9E-05 21.0 3.3 29 36-64 4-32 (34)
291 KOG2796 Uncharacterized conser 77.7 33 0.00072 27.1 9.1 87 9-95 215-309 (366)
292 cd02680 MIT_calpain7_2 MIT: do 77.3 4.2 9.1E-05 25.4 3.4 31 105-135 4-35 (75)
293 PF13281 DUF4071: Domain of un 76.8 17 0.00038 29.5 7.6 74 12-85 147-230 (374)
294 KOG1920 IkappaB kinase complex 76.7 3.4 7.5E-05 38.1 3.9 22 113-134 959-980 (1265)
295 cd02656 MIT MIT: domain contai 76.6 6.1 0.00013 24.1 4.0 25 111-135 11-35 (75)
296 PF09477 Type_III_YscG: Bacter 75.9 21 0.00046 24.1 10.1 91 2-96 2-93 (116)
297 smart00668 CTLH C-terminal to 75.6 4.6 0.0001 22.9 3.1 26 10-35 5-30 (58)
298 KOG2471 TPR repeat-containing 75.6 36 0.00078 29.2 9.2 127 5-135 503-648 (696)
299 PF12862 Apc5: Anaphase-promot 75.3 11 0.00024 24.0 5.1 50 15-64 7-66 (94)
300 cd02678 MIT_VPS4 MIT: domain c 75.1 6.2 0.00014 24.2 3.8 26 110-135 10-35 (75)
301 KOG3616 Selective LIM binding 74.6 17 0.00036 32.8 7.3 78 44-129 770-847 (1636)
302 KOG1839 Uncharacterized protei 74.4 37 0.00079 31.9 9.7 134 2-135 969-1128(1236)
303 TIGR02508 type_III_yscG type I 74.0 24 0.00051 23.7 8.5 84 7-94 6-90 (115)
304 cd02684 MIT_2 MIT: domain cont 73.4 7.2 0.00016 24.1 3.7 29 107-135 6-35 (75)
305 KOG1308 Hsp70-interacting prot 73.2 3.1 6.6E-05 33.6 2.4 86 7-92 115-202 (377)
306 PF09205 DUF1955: Domain of un 71.5 33 0.00072 24.3 8.0 116 16-133 12-147 (161)
307 KOG3783 Uncharacterized conser 71.5 64 0.0014 27.6 9.8 44 11-54 308-353 (546)
308 KOG0551 Hsp90 co-chaperone CNS 71.2 12 0.00026 30.3 5.3 91 44-134 86-181 (390)
309 KOG2581 26S proteasome regulat 70.1 23 0.00051 29.4 6.8 118 17-134 137-275 (493)
310 PF09986 DUF2225: Uncharacteri 69.9 8 0.00017 28.8 4.0 46 19-64 138-190 (214)
311 COG3118 Thioredoxin domain-con 69.9 11 0.00023 29.8 4.7 57 38-94 133-190 (304)
312 KOG2300 Uncharacterized conser 69.7 46 0.001 28.4 8.6 122 14-135 283-474 (629)
313 KOG0889 Histone acetyltransfer 68.9 49 0.0011 34.5 9.6 79 14-92 2744-2832(3550)
314 PF13041 PPR_2: PPR repeat fam 68.8 8.5 0.00018 21.2 3.1 27 38-64 2-28 (50)
315 PF10255 Paf67: RNA polymerase 68.4 8.6 0.00019 31.6 4.1 81 11-91 127-236 (404)
316 KOG1070 rRNA processing protei 68.3 47 0.001 31.9 9.0 124 12-135 1464-1593(1710)
317 cd02677 MIT_SNX15 MIT: domain 68.0 9.6 0.00021 23.6 3.4 29 107-135 7-35 (75)
318 KOG1310 WD40 repeat protein [G 67.5 16 0.00034 31.5 5.5 89 6-94 374-467 (758)
319 KOG2796 Uncharacterized conser 65.5 5.7 0.00012 31.3 2.4 56 11-66 257-313 (366)
320 KOG2582 COP9 signalosome, subu 65.1 24 0.00051 28.9 5.9 121 8-134 77-211 (422)
321 PF15015 NYD-SP12_N: Spermatog 65.0 21 0.00045 30.0 5.6 81 52-132 196-288 (569)
322 COG4455 ImpE Protein of avirul 63.9 29 0.00062 26.7 5.8 56 9-64 4-60 (273)
323 COG3947 Response regulator con 63.6 13 0.00028 29.6 4.1 54 11-64 284-338 (361)
324 PF04348 LppC: LppC putative l 63.3 2.4 5.1E-05 36.0 0.0 109 24-132 7-124 (536)
325 COG0790 FOG: TPR repeat, SEL1 63.0 63 0.0014 24.3 10.7 109 21-132 128-263 (292)
326 PF06552 TOM20_plant: Plant sp 62.4 10 0.00022 27.8 3.1 35 20-54 49-84 (186)
327 TIGR03504 FimV_Cterm FimV C-te 60.5 18 0.00039 20.0 3.3 23 111-133 4-26 (44)
328 COG3629 DnrI DNA-binding trans 60.0 82 0.0018 24.6 8.4 61 72-132 153-213 (280)
329 PF00244 14-3-3: 14-3-3 protei 59.9 73 0.0016 24.0 8.6 120 12-135 7-155 (236)
330 PF10607 CLTH: CTLH/CRA C-term 59.7 38 0.00083 22.9 5.6 57 9-65 4-66 (145)
331 COG4976 Predicted methyltransf 59.4 14 0.0003 28.6 3.4 35 101-135 24-58 (287)
332 PHA02537 M terminase endonucle 58.9 35 0.00076 25.9 5.6 28 108-135 171-207 (230)
333 KOG1586 Protein required for f 58.9 84 0.0018 24.4 9.3 32 102-133 149-181 (288)
334 KOG4814 Uncharacterized conser 58.4 24 0.00051 31.1 5.0 77 16-92 364-448 (872)
335 PF06957 COPI_C: Coatomer (COP 58.1 12 0.00026 31.0 3.2 35 6-40 300-334 (422)
336 KOG2041 WD40 repeat protein [G 58.0 84 0.0018 28.3 8.3 84 48-131 769-877 (1189)
337 PF11817 Foie-gras_1: Foie gra 57.9 70 0.0015 24.0 7.2 60 72-131 178-243 (247)
338 KOG4507 Uncharacterized conser 57.1 21 0.00045 31.3 4.5 75 19-93 620-697 (886)
339 KOG2280 Vacuolar assembly/sort 57.0 1.5E+02 0.0032 26.7 9.9 84 43-128 688-792 (829)
340 PF10345 Cohesin_load: Cohesin 55.6 48 0.001 28.4 6.6 58 74-131 363-429 (608)
341 KOG1070 rRNA processing protei 54.7 2E+02 0.0043 28.0 10.4 75 17-91 1541-1619(1710)
342 KOG0545 Aryl-hydrocarbon recep 54.6 1E+02 0.0022 24.2 9.1 53 42-94 233-286 (329)
343 PF14561 TPR_20: Tetratricopep 54.4 54 0.0012 20.8 5.8 29 68-96 18-46 (90)
344 PF13934 ELYS: Nuclear pore co 54.2 56 0.0012 24.4 6.1 48 44-92 113-160 (226)
345 COG4785 NlpI Lipoprotein NlpI, 54.1 23 0.00049 27.3 3.9 63 65-129 92-156 (297)
346 KOG0985 Vesicle coat protein c 52.3 1E+02 0.0022 29.1 8.1 97 37-133 982-1131(1666)
347 PF06160 EzrA: Septation ring 51.3 32 0.0007 29.3 4.8 68 6-74 481-550 (560)
348 PRK10941 hypothetical protein; 51.0 65 0.0014 24.9 6.1 55 45-99 187-242 (269)
349 KOG3824 Huntingtin interacting 50.7 88 0.0019 25.4 6.8 74 6-80 117-192 (472)
350 PF01535 PPR: PPR repeat; Int 50.7 24 0.00052 16.6 2.6 21 44-64 5-25 (31)
351 KOG2709 Uncharacterized conser 50.2 15 0.00032 30.7 2.5 31 105-135 21-51 (560)
352 KOG3617 WD40 and TPR repeat-co 50.1 1.3E+02 0.0029 27.7 8.4 52 38-93 937-988 (1416)
353 PRK13184 pknD serine/threonine 49.9 63 0.0014 29.6 6.6 92 14-134 483-580 (932)
354 PF04053 Coatomer_WDAD: Coatom 49.6 1.5E+02 0.0033 24.6 8.7 57 31-94 313-369 (443)
355 COG4499 Predicted membrane pro 48.1 1.4E+02 0.003 24.7 7.6 52 40-91 249-300 (434)
356 TIGR00756 PPR pentatricopeptid 47.5 28 0.0006 16.6 2.6 21 44-64 5-25 (35)
357 PF09797 NatB_MDM20: N-acetylt 46.7 57 0.0012 25.9 5.4 47 21-67 198-245 (365)
358 PF04184 ST7: ST7 protein; In 46.4 1.9E+02 0.0041 24.8 8.4 73 12-84 265-342 (539)
359 PF08513 LisH: LisH; InterPro 46.1 37 0.00081 16.5 3.6 24 7-30 1-24 (27)
360 PF07035 Mic1: Colon cancer-as 45.9 1.1E+02 0.0024 22.0 6.2 61 4-64 83-148 (167)
361 KOG0890 Protein kinase of the 45.6 42 0.00092 33.6 5.0 85 44-135 1388-1478(2382)
362 COG2015 Alkyl sulfatase and re 44.9 45 0.00098 28.5 4.6 53 39-91 452-505 (655)
363 PF04840 Vps16_C: Vps16, C-ter 43.9 1.4E+02 0.0029 23.7 7.0 43 49-93 187-229 (319)
364 PF00637 Clathrin: Region in C 43.7 26 0.00056 23.5 2.7 55 12-66 13-69 (143)
365 KOG2997 F-box protein FBX9 [Ge 43.4 38 0.00082 27.3 3.8 32 104-135 17-48 (366)
366 PF10602 RPN7: 26S proteasome 42.8 1.2E+02 0.0027 21.6 6.6 91 3-93 33-134 (177)
367 KOG1538 Uncharacterized conser 42.7 33 0.00072 30.4 3.6 58 8-65 775-843 (1081)
368 COG4525 TauB ABC-type taurine 42.5 11 0.00023 28.6 0.6 21 19-39 190-210 (259)
369 COG4649 Uncharacterized protei 41.0 1.5E+02 0.0032 22.1 10.7 113 20-132 72-193 (221)
370 PF12931 Sec16_C: Sec23-bindin 40.1 1.6E+02 0.0035 22.7 6.9 21 9-29 11-31 (284)
371 PF04781 DUF627: Protein of un 40.0 63 0.0014 21.7 3.9 29 12-40 2-30 (111)
372 PF04190 DUF410: Protein of un 40.0 1.7E+02 0.0036 22.3 14.0 129 3-131 7-166 (260)
373 PF11817 Foie-gras_1: Foie gra 39.8 1.1E+02 0.0024 22.9 5.9 54 40-93 179-239 (247)
374 PF05843 Suf: Suppressor of fo 37.9 1.8E+02 0.004 22.2 10.8 79 15-93 10-91 (280)
375 KOG1915 Cell cycle control pro 37.1 2.8E+02 0.006 24.0 9.8 117 18-134 153-272 (677)
376 PF13812 PPR_3: Pentatricopept 37.0 53 0.0011 15.7 2.9 21 44-64 6-26 (34)
377 COG1116 TauB ABC-type nitrate/ 37.0 22 0.00047 27.3 1.5 21 19-39 188-208 (248)
378 TIGR01716 RGG_Cterm transcript 36.6 1.6E+02 0.0035 21.2 7.0 26 9-34 131-156 (220)
379 PF08311 Mad3_BUB1_I: Mad3/BUB 36.6 70 0.0015 21.6 3.9 33 101-133 93-126 (126)
380 PF05843 Suf: Suppressor of fo 36.4 1.4E+02 0.0029 22.9 5.9 47 19-65 49-96 (280)
381 COG4941 Predicted RNA polymera 36.2 40 0.00088 27.4 2.9 26 111-136 370-395 (415)
382 COG5159 RPN6 26S proteasome re 35.9 2.3E+02 0.0051 22.8 8.5 115 20-134 99-234 (421)
383 COG5110 RPN1 26S proteasome re 35.3 2.3E+02 0.0049 25.0 7.3 70 14-83 213-298 (881)
384 PF10345 Cohesin_load: Cohesin 35.0 2.9E+02 0.0063 23.7 12.9 130 3-133 57-206 (608)
385 TIGR03824 FlgM_jcvi flagellar 33.7 71 0.0015 20.4 3.4 29 3-35 65-94 (95)
386 smart00544 MA3 Domain in DAP-5 33.0 1.3E+02 0.0027 19.3 4.6 38 48-85 11-48 (113)
387 KOG0686 COP9 signalosome, subu 33.0 3E+02 0.0064 23.1 7.8 86 7-92 151-249 (466)
388 PF06287 DUF1039: Protein of u 32.8 1.2E+02 0.0026 18.5 4.9 47 20-66 7-54 (66)
389 KOG0546 HSP90 co-chaperone CPR 32.7 47 0.001 27.0 2.8 62 73-134 276-337 (372)
390 PF11207 DUF2989: Protein of u 32.7 2E+02 0.0043 21.5 5.9 53 38-91 140-197 (203)
391 PF15469 Sec5: Exocyst complex 32.7 1.8E+02 0.0039 20.6 5.7 35 3-37 134-170 (182)
392 PF12921 ATP13: Mitochondrial 32.1 77 0.0017 21.5 3.5 28 38-65 51-78 (126)
393 KOG0292 Vesicle coat complex C 32.1 83 0.0018 28.9 4.4 37 5-41 1083-1119(1202)
394 COG2909 MalT ATP-dependent tra 31.3 4.2E+02 0.0091 24.4 11.2 125 10-134 364-525 (894)
395 KOG1920 IkappaB kinase complex 31.3 4.7E+02 0.01 25.0 9.0 45 48-93 974-1020(1265)
396 smart00546 CUE Domain that may 31.2 90 0.0019 16.6 3.7 34 29-62 6-39 (43)
397 KOG0889 Histone acetyltransfer 31.1 60 0.0013 33.9 3.7 33 103-135 2809-2841(3550)
398 PRK11619 lytic murein transgly 30.5 2.3E+02 0.005 24.8 6.9 52 13-64 319-371 (644)
399 KOG2518 5'-3' exonuclease [Rep 30.0 69 0.0015 27.4 3.5 28 109-136 99-126 (556)
400 KOG2063 Vacuolar assembly/sort 29.4 78 0.0017 28.8 3.9 61 9-69 310-376 (877)
401 PF09670 Cas_Cas02710: CRISPR- 29.1 3.1E+02 0.0067 22.2 11.0 60 7-66 132-196 (379)
402 PF10366 Vps39_1: Vacuolar sor 29.1 65 0.0014 21.2 2.7 25 42-66 42-66 (108)
403 TIGR03362 VI_chp_7 type VI sec 28.1 3E+02 0.0065 21.7 13.9 56 4-64 101-157 (301)
404 KOG1839 Uncharacterized protei 27.7 5.1E+02 0.011 24.8 8.7 127 9-135 935-1086(1236)
405 PRK04778 septation ring format 27.6 2.4E+02 0.0052 24.1 6.5 62 21-83 501-562 (569)
406 COG1895 Uncharacterized conser 27.4 1E+02 0.0023 21.2 3.4 38 55-92 42-80 (129)
407 PF02259 FAT: FAT domain; Int 26.5 2.9E+02 0.0063 21.0 7.9 62 3-64 143-209 (352)
408 TIGR03362 VI_chp_7 type VI sec 26.2 3.3E+02 0.0071 21.4 7.1 52 42-93 216-271 (301)
409 KOG4814 Uncharacterized conser 26.2 1.1E+02 0.0025 27.1 4.2 22 111-132 399-420 (872)
410 smart00576 BTP Bromodomain tra 26.2 1.6E+02 0.0035 17.9 4.0 40 3-43 26-65 (77)
411 smart00386 HAT HAT (Half-A-TPR 26.1 82 0.0018 14.5 3.4 26 21-46 2-28 (33)
412 KOG2005 26S proteasome regulat 26.1 2.2E+02 0.0047 25.5 5.8 73 15-87 212-302 (878)
413 COG5600 Transcription-associat 25.7 1.2E+02 0.0027 24.9 4.1 49 44-92 182-240 (413)
414 PF14689 SPOB_a: Sensor_kinase 25.3 1.5E+02 0.0033 17.3 4.4 39 3-64 10-48 (62)
415 KOG3783 Uncharacterized conser 25.2 3E+02 0.0065 23.7 6.4 59 75-133 452-518 (546)
416 PF10037 MRP-S27: Mitochondria 25.1 1.7E+02 0.0037 24.3 4.9 51 42-92 106-158 (429)
417 PF12976 DUF3860: Domain of Un 25.1 1.9E+02 0.0041 18.3 4.2 35 7-42 4-41 (92)
418 KOG2114 Vacuolar assembly/sort 24.9 1.8E+02 0.0039 26.5 5.2 22 113-134 375-396 (933)
419 PF02064 MAS20: MAS20 protein 24.8 1E+02 0.0022 20.9 3.1 25 111-135 68-92 (121)
420 PF04910 Tcf25: Transcriptiona 24.5 3.7E+02 0.0081 21.6 11.8 121 8-132 12-165 (360)
421 PF04348 LppC: LppC putative l 24.5 25 0.00054 29.9 0.0 82 11-92 29-118 (536)
422 KOG3824 Huntingtin interacting 24.2 1.6E+02 0.0035 24.0 4.4 33 103-135 147-179 (472)
423 KOG0276 Vesicle coat complex C 24.1 5.2E+02 0.011 23.1 7.6 72 9-93 616-687 (794)
424 PF05944 Phage_term_smal: Phag 23.2 94 0.002 21.4 2.7 26 11-36 53-78 (132)
425 COG2250 Uncharacterized conser 22.5 1.5E+02 0.0033 20.2 3.7 23 13-35 20-42 (132)
426 smart00777 Mad3_BUB1_I Mad3/BU 22.5 2.4E+02 0.0052 19.2 4.6 58 68-131 65-124 (125)
427 KOG2561 Adaptor protein NUB1, 22.4 1.2E+02 0.0026 25.7 3.5 26 109-134 270-295 (568)
428 PF07219 HemY_N: HemY protein 22.1 1.5E+02 0.0032 19.3 3.4 45 42-86 62-107 (108)
429 PF04190 DUF410: Protein of un 22.1 1.3E+02 0.0029 22.9 3.6 57 4-62 50-113 (260)
430 PF14852 Fis1_TPR_N: Fis1 N-te 22.0 1.1E+02 0.0024 15.9 2.3 26 39-64 1-29 (35)
431 COG1476 Predicted transcriptio 21.8 1.2E+02 0.0027 18.5 2.7 33 14-46 31-64 (68)
432 KOG0276 Vesicle coat complex C 21.8 5.8E+02 0.013 22.8 7.7 19 75-93 724-742 (794)
433 KOG1915 Cell cycle control pro 21.7 5.4E+02 0.012 22.4 9.5 87 49-135 447-536 (677)
434 KOG2027 Spindle pole body prot 21.7 1.7E+02 0.0036 24.1 4.2 35 2-36 13-47 (388)
435 COG3923 PriC Primosomal replic 21.5 1.4E+02 0.0031 21.5 3.4 28 6-37 57-84 (175)
436 PRK10316 hypothetical protein; 21.3 2.9E+02 0.0062 20.8 5.0 24 12-35 60-83 (209)
437 PRK15356 type III secretion sy 21.0 2.2E+02 0.0049 17.7 4.8 31 37-67 25-56 (75)
438 KOG1538 Uncharacterized conser 20.9 2.5E+02 0.0055 25.3 5.2 26 107-132 805-830 (1081)
439 PF10373 EST1_DNA_bind: Est1 D 20.7 1.4E+02 0.0031 22.0 3.5 29 106-134 16-44 (278)
440 PRK13456 DNA protection protei 20.5 2.7E+02 0.0059 20.5 4.7 28 23-50 67-98 (186)
441 TIGR03595 Obg_CgtA_exten Obg f 20.4 1.3E+02 0.0028 18.2 2.6 27 28-54 17-45 (69)
442 PF13838 Clathrin_H_link: Clat 20.1 2.1E+02 0.0046 17.3 3.5 21 9-29 9-29 (66)
No 1
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-23 Score=171.47 Aligned_cols=129 Identities=44% Similarity=0.669 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHc
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l 85 (136)
+++.|+++++++++++|.+|+|||||+..++.+|.|+|++||||+..|+|+||.+++...++...+..|+|+++.|+.++
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l 95 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL 95 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence 57788888999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cChhhhhhhhh-------------------hhhc------ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 86 RSGTSVCRCSV-------------------MLRL------LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 86 ~~~~ea~~~~~-------------------~~~~------~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
++|++|.+-.+ ++.+ ++..+|+||+++|++|..++|+++|..+|++||.
T Consensus 96 k~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 96 KEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 99999964221 0111 3567999999999999999999999999999985
No 2
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.61 E-value=1e-15 Score=97.76 Aligned_cols=78 Identities=24% Similarity=0.392 Sum_probs=66.4
Q ss_pred HcCChhhHHHHHHHHhccCC-ChHH--HHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhh
Q 032655 18 SKHLYSSAIFFANEVAALTN-DPAD--VYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRC 94 (136)
Q Consensus 18 ~~~~~~~Alf~aekl~~~~~-~~~~--~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~ 94 (136)
++++|++|+++++++++..| ++++ ++.+|.|++..|+|++|+.++++.+..+.++.+.+++|+|++++|+|+||++.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 47899999999999999999 5454 55569999999999999999988555667889999999999999999999864
Q ss_pred h
Q 032655 95 S 95 (136)
Q Consensus 95 ~ 95 (136)
.
T Consensus 81 l 81 (84)
T PF12895_consen 81 L 81 (84)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=6.5e-12 Score=104.49 Aligned_cols=120 Identities=16% Similarity=0.134 Sum_probs=105.9
Q ss_pred HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655 16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
++.+++++.|.|...|++.++| +.--+.+.|..+.+.|+.++|+.+++++ .++++++.|+|-.|..++.+++|+||+.
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~ 578 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQ 578 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHH
Confidence 5678999999999999999999 7777889999999999999999999665 4588999999999999999999999987
Q ss_pred hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.+.-..-.|.++.+++++|++|..+|+.+.|+..|.=|+.+
T Consensus 579 ~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 579 ELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 766443345789999999999999999999999999887754
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.28 E-value=2.4e-11 Score=85.09 Aligned_cols=106 Identities=13% Similarity=0.083 Sum_probs=83.3
Q ss_pred HHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHh
Q 032655 28 FANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISS 106 (136)
Q Consensus 28 ~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a 106 (136)
+.++++++.|+ +++.+|.+++..|+|++|+..++.. .+.+.+...++.+|.++..+|++++|++.....+...|..+
T Consensus 15 ~~~~al~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 15 ILKQLLSVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHHcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 44666666654 4777889999999999998887654 34667888889999999999999998886665444456677
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 107 AICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 107 ~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..++.+|.++..+|++++|+.+|.+|+++
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 78888899999999999999999988864
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.26 E-value=1.3e-10 Score=97.94 Aligned_cols=124 Identities=9% Similarity=-0.152 Sum_probs=85.8
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChh
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
+-.-+..+++++.|+...++++.++| .+..++.+|.++...|++++|+..+++. ...+.++.+++..|.+++.+|+++
T Consensus 337 lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 33444567778888888888877777 5667777788887788888777776553 335566777777788888888877
Q ss_pred hhhhhhh----------------------------------hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 90 SVCRCSV----------------------------------MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 90 ea~~~~~----------------------------------~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+|+.... ..+...|..+.++..+|.++..+|++++|+..|.+|+++
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 7753211 111123445666777888888888888888888888764
No 6
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=3.1e-10 Score=81.64 Aligned_cols=89 Identities=6% Similarity=-0.166 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL 82 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~ 82 (136)
.....-.+.+.+...++++.|+.+.++++...| ++.....+|.++...|++.+|...+++. ...+.+....+.+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 334455566777778888888888888888887 5667777888888888888888877554 23455667777888888
Q ss_pred HHccChhhhhh
Q 032655 83 EELRSGTSVCR 93 (136)
Q Consensus 83 ~~l~~~~ea~~ 93 (136)
...|++++|.+
T Consensus 110 ~~~g~~~~A~~ 120 (234)
T TIGR02521 110 CQQGKYEQAMQ 120 (234)
T ss_pred HHcccHHHHHH
Confidence 88888888754
No 7
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.24 E-value=5.2e-10 Score=78.07 Aligned_cols=121 Identities=14% Similarity=-0.020 Sum_probs=97.2
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC-C---hHHHHHHHHHHhccCChHHHHHHHhcCccccc----CcchHHHHHHHHH
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN-D---PADVYMQAQALFLGRHYRRPFHLLNSSKIVLR----DLRFRYLAAKCLE 83 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~---~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~----~~~~~~l~a~c~~ 83 (136)
-+...+..+++..+.-.++++..-.| + +...+.+|.+++..|+|++|...++...-... .+.+++-+|++++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 17 QALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 33444568999999999999999998 3 34688899999999999999998877542111 2357888999999
Q ss_pred HccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
..|+|++|+..... ..+.+..+.+..++|.+|.++|++++|+..|++||
T Consensus 97 ~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 97 QQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999887643 22344566677799999999999999999999986
No 8
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.23 E-value=7.7e-11 Score=80.37 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=84.5
Q ss_pred HHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhH
Q 032655 30 NEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSA 107 (136)
Q Consensus 30 ekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~ 107 (136)
++++...| +++..+.+|.+++..|++.+|...++.. ...+.++..++.+|.|+..+|++++|...........|....
T Consensus 7 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 86 (135)
T TIGR02552 7 KDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPR 86 (135)
T ss_pred HHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 56778888 6677888999999999999998888664 335678888999999999999999988755443333455667
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 108 ICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 108 i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.++.+|.+|..+|++++|+.+|+++++.
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 87 PYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7788999999999999999999988864
No 9
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.23 E-value=1.9e-10 Score=98.37 Aligned_cols=127 Identities=10% Similarity=-0.084 Sum_probs=111.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHcc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~ 86 (136)
++-+-+--...|.+++|.+|-++++++.| +......+|+++.+.+++++|+..+++.- ..+.++...+++|.|+.++|
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g 168 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG 168 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc
Confidence 44444455567999999999999999999 67789999999999999999999887653 36789999999999999999
Q ss_pred ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+|+||++.......+.|..+.++..+|.+++.+|+.++|+.+|++|++.
T Consensus 169 ~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 169 QSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred chHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999998777655566777888999999999999999999999999864
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.21 E-value=3.8e-10 Score=95.09 Aligned_cols=119 Identities=14% Similarity=-0.009 Sum_probs=94.4
Q ss_pred HHcCChhhHHHHHHHHhccC---C-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhh
Q 032655 17 VSKHLYSSAIFFANEVAALT---N-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 17 l~~~~~~~Alf~aekl~~~~---~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
-..+.|+.|+-+.++++... | ....++.+|.+++..|++++|+..+++. .+.+.+...++..|.++..+|++++|
T Consensus 305 ~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 305 KADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 44589999999999999875 4 3446888999999999999999988665 34667778889999999999999999
Q ss_pred hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++.....+...|....+++.+|.++..+|++++|+.+|+++|++
T Consensus 385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 87655433333445667777788888888888888888877754
No 11
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.17 E-value=4.5e-10 Score=82.69 Aligned_cols=117 Identities=7% Similarity=-0.040 Sum_probs=100.9
Q ss_pred cCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH-HHccC--hhhhhh
Q 032655 19 KHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL-EELRS--GTSVCR 93 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~-~~l~~--~~ea~~ 93 (136)
.+..++++-..++.+..+| +++.|+.+|.++...|+++.|+..+++. .+.+.++..++.+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 5667899999999999999 8899999999999999999999999665 45778999999999996 67788 488877
Q ss_pred hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.....+...|....+++++|.++..+|++++|+.+|+++|+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666554445567778899999999999999999999999875
No 12
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=1.2e-09 Score=78.49 Aligned_cols=125 Identities=10% Similarity=-0.034 Sum_probs=99.2
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc---cccCcchHHHHHHHHHHcc
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI---VLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l---~~~~~~~~~l~a~c~~~l~ 86 (136)
.+..-+...++++.|+.+.++++...| ++..++.+|.+++..|++++|...+++..- .+......+..|.|+...|
T Consensus 70 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 70 ALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 345566778999999999999999998 677889999999999999999998876532 1234557788999999999
Q ss_pred ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++++|.+.....+...|.....++.+|.++..+|++++|..++.++++.
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999987655433323334456778899999999999999999988753
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.11 E-value=1.8e-09 Score=91.21 Aligned_cols=127 Identities=16% Similarity=0.058 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHc
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l 85 (136)
.+......++.+|+|++|+...++++...| +++.++.+|.++...|+|.+|+..+++.. ..+.+.......|+++...
T Consensus 24 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (899)
T TIGR02917 24 SLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQ 103 (899)
T ss_pred HHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHC
Confidence 455566778889999999999999999999 88899999999999999999999886643 2445667889999999999
Q ss_pred cChhhhhhhhhhhh-cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 86 RSGTSVCRCSVMLR-LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 86 ~~~~ea~~~~~~~~-~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
|++++|++...... ...+..+.+++.+|.++..+|++++|..+|+++++
T Consensus 104 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 153 (899)
T TIGR02917 104 GKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALA 153 (899)
T ss_pred CCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999976543211 12234555666778888888888888888877765
No 14
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=1.5e-09 Score=90.69 Aligned_cols=118 Identities=11% Similarity=-0.001 Sum_probs=74.1
Q ss_pred HHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhh
Q 032655 17 VSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRC 94 (136)
Q Consensus 17 l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~ 94 (136)
...++++.|+.+.++++.++| +++.++.+|.++...|++++|+..+++. .+++.++...+..+..++..|++++|+..
T Consensus 349 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 349 TIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 345666666666666666666 4555666666666666666666666443 33444444545555556666666666554
Q ss_pred hhhhhcc-cchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 95 SVMLRLL-KMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 95 ~~~~~~~-~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
....+.. .|.....+.++|.+|..+|++++|...+.+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 3332222 233445567889999999999999999887653
No 15
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.08 E-value=2.1e-09 Score=75.28 Aligned_cols=109 Identities=9% Similarity=0.002 Sum_probs=91.2
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccCh
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~ 88 (136)
.+.......|++++|+-.+++++..+| +++.++.+|.++...|+|.+|+..+++. .+.+.++..++..|.|+..+|++
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 445667788999999999999999999 8889999999999999999999988664 45789999999999999999999
Q ss_pred hhhhhhhhhhhcccchHhHHHHHHHHHHHHc
Q 032655 89 TSVCRCSVMLRLLKMISSAICFLRGKAYEAL 119 (136)
Q Consensus 89 ~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~ 119 (136)
++|+......+...|..+..+.++|.+...+
T Consensus 109 ~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 109 GLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 9999876654444445555666777776554
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.08 E-value=1.5e-09 Score=95.99 Aligned_cols=117 Identities=6% Similarity=-0.125 Sum_probs=101.4
Q ss_pred cCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655 19 KHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM 97 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~ 97 (136)
.|+++.|+.+.++++...|+++.++.+|.++...|++.+|+..+++. .+.+.++..++.+|.++.+.|++++|++....
T Consensus 589 ~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 589 PGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 38999999999999999998788888999999999999999988654 44778888999999999999999999887665
Q ss_pred hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 98 LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 98 ~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+...|....+++.+|.++..+|++++|..+|++|+++
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 55555667788999999999999999999999999875
No 17
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.04 E-value=4.7e-09 Score=77.97 Aligned_cols=131 Identities=12% Similarity=0.036 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-Ch---HHHHHHHHHHhccCChHHHHHHHhcC-cccccCcc---hHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DP---ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLR---FRY 76 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~---~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~---~~~ 76 (136)
..+.+-.....++..++|+.|+...++++...| ++ +.++.+|.+++..|++.+|+..+++. ...+.++. ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 345667778888999999999999999999998 54 46799999999999999999988765 33455555 689
Q ss_pred HHHHHHHHc--------cChhhhhhhhhhhhcccch-----------------HhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655 77 LAAKCLEEL--------RSGTSVCRCSVMLRLLKMI-----------------SSAICFLRGKAYEALGNCAQARLWLVS 131 (136)
Q Consensus 77 l~a~c~~~l--------~~~~ea~~~~~~~~~~~~~-----------------~a~i~~l~G~~~~~~~~~~~A~~~y~~ 131 (136)
..|.|+++. |++++|.+.....+...|. .....+.+|.+|..+|++.+|+..|++
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 999999987 7888887643322111110 111124678999999999999999999
Q ss_pred hhcc
Q 032655 132 CDEF 135 (136)
Q Consensus 132 AL~~ 135 (136)
+++.
T Consensus 192 al~~ 195 (235)
T TIGR03302 192 VVEN 195 (235)
T ss_pred HHHH
Confidence 8753
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.04 E-value=4.7e-09 Score=89.49 Aligned_cols=120 Identities=16% Similarity=0.018 Sum_probs=78.2
Q ss_pred HHHcCChhh----HHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChh
Q 032655 16 CVSKHLYSS----AIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 16 ~l~~~~~~~----Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
+...|++++ |+.+.++++.+.| ++..+..+|..+...|++.+|+..+++. .+.+.++..++.+|.++.++|+++
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 345566664 6666777777666 5556666677777777777776666543 234556666666777777777777
Q ss_pred hhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 90 SVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+|++.........|..+.....+|.++..+|+.++|+..|+++++.
T Consensus 336 eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 336 AASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7766544333223334444556788888889999999998888764
No 19
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.04 E-value=3.9e-09 Score=81.90 Aligned_cols=120 Identities=12% Similarity=-0.115 Sum_probs=89.6
Q ss_pred HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655 16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
+...|+++.|+...++++.+.| +++.++.+|..+...|+|+.|+..+++. .+.+.+...++..|.+++..|++++|++
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~ 153 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD 153 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3456888888888888888888 6778888888888888888888877554 4456777788888888888888888742
Q ss_pred hh---------------------------------hh-----------------h---------h-------cc----cc
Q 032655 94 CS---------------------------------VM-----------------L---------R-------LL----KM 103 (136)
Q Consensus 94 ~~---------------------------------~~-----------------~---------~-------~~----~~ 103 (136)
.. .. . + +. .|
T Consensus 154 ~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~ 233 (296)
T PRK11189 154 DLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAE 233 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHH
Confidence 00 00 0 0 00 01
Q ss_pred hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 104 ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 104 ~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..+.+++.+|.+++.+|++++|+.+|++|++.
T Consensus 234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 234 RLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 23357889999999999999999999999864
No 20
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.03 E-value=2.1e-09 Score=89.97 Aligned_cols=118 Identities=14% Similarity=-0.036 Sum_probs=88.0
Q ss_pred HcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhh
Q 032655 18 SKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCS 95 (136)
Q Consensus 18 ~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~ 95 (136)
++|+.+-|+-.-+|+++++| -|+....+|.++...|+..+|..+..+. .+.+.|++..+.+|..+.+.|++++|..-.
T Consensus 298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHH
Confidence 45677777777777777777 3555666777777777777777766544 345677777777777777777777776544
Q ss_pred hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 96 VMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 96 ~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+.+.-.|.-++.+.++|.+|+.+||.++|+.||++||++
T Consensus 378 ~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 378 LKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred HHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 4444445778888889999999999999999999999976
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.01 E-value=7.7e-09 Score=87.46 Aligned_cols=125 Identities=15% Similarity=0.075 Sum_probs=93.1
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccCh
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~ 88 (136)
.+..-+...+++++|+-+.++++...| +++..+.++.++...|++.+|+.++++.. ..+.++..++.+|.++...|++
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 344455667888888888888888887 66677788888888888888888876642 2456677888888888888888
Q ss_pred hhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 89 TSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 89 ~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++|.+.........|.....++.+|.+|..+|++++|..+|+++++.
T Consensus 618 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88877554333323444556778888888888888888888888754
No 22
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.99 E-value=1.8e-09 Score=82.52 Aligned_cols=126 Identities=13% Similarity=-0.078 Sum_probs=80.7
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccC
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~ 87 (136)
.....-+...|+++.|+-..++++..+| +++-...+++.+...|++.++..+++...- .+.++..+..+|.++..+|+
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc
Confidence 3444556678899999999999999999 566777888899999999887777765433 35777888888999999999
Q ss_pred hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+++|+..........|....+....|.++...|+.++|...++++++.
T Consensus 230 ~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 230 YEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999988766555455666777778899999999999999999988864
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.97 E-value=7.9e-09 Score=88.12 Aligned_cols=126 Identities=10% Similarity=-0.015 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHc
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l 85 (136)
-++..+...+..|++++|+-.++.+++..| +++.++.+|.+....|++..|+..+++. .+.+.++..+...|.++.+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 466777788888888888888888888888 6777888888888888888888877664 34667788888888888888
Q ss_pred cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
|++++|++.....+...|.....+..+|.++..+|++++|+..|++++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~ 171 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQA 171 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 888888765543332233444555666777777777777777666554
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=98.97 E-value=5e-09 Score=87.60 Aligned_cols=115 Identities=10% Similarity=-0.109 Sum_probs=94.3
Q ss_pred CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655 20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM 97 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~ 97 (136)
++++.|+-.++++++++| +++.+..+|.++...|++.+|+..+++. .+.+.++..++.+|.++...|++++|+.....
T Consensus 318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 458999999999999999 7888999999999999999999999765 45778888999999999999999999886654
Q ss_pred hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 98 LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 98 ~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.+.-.|......+.+|.++..+|++++|+.+++++++
T Consensus 398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4332233333345566667778999999999999875
No 25
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.96 E-value=1.4e-08 Score=86.99 Aligned_cols=132 Identities=11% Similarity=-0.002 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHH
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAK 80 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~ 80 (136)
.++.+|+|+.+..+-.-+....|+-=+--+.--.| +++..+++|......|.+++|..+++.. .+.+.+...+..+|.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~ 128 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLR 128 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 46788999999988888888887766555555567 6889999999999999999999988664 557899999999999
Q ss_pred HHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 81 CLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 81 c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
++.++++++||+......++..|..+...+++|.++.++|.+++|.+.|.+++.
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 999999999999988877777788899999999999999999999999999984
No 26
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.93 E-value=6e-09 Score=74.09 Aligned_cols=92 Identities=8% Similarity=0.080 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHH
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAK 80 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~ 80 (136)
++.++.+-++--.....|++++|.-+++.++..+| +++-|+-||-|+-..|+|..|+.....+ .+.+.+|...+..|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 34444555555555555555555555555555555 4445555555555555555555544332 234455555555555
Q ss_pred HHHHccChhhhhhh
Q 032655 81 CLEELRSGTSVCRC 94 (136)
Q Consensus 81 c~~~l~~~~ea~~~ 94 (136)
|++.+|+.++|.+.
T Consensus 112 c~L~lG~~~~A~~a 125 (157)
T PRK15363 112 CYLACDNVCYAIKA 125 (157)
T ss_pred HHHHcCCHHHHHHH
Confidence 55555555555443
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.92 E-value=2e-08 Score=90.27 Aligned_cols=122 Identities=11% Similarity=-0.038 Sum_probs=99.7
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcc--------------hHHH
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLR--------------FRYL 77 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~--------------~~~l 77 (136)
..++..+++++|+-..++++..+| +++.++.+|.+++..|++++|+..+++.. ..+.+.. ....
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 456788999999999999999999 88889999999999999999999887643 2333322 1234
Q ss_pred HHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 78 AAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 78 ~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.|.++.+.|++++|+......+...|..+.+++.+|.+|..+|++++|+.+|+++|++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5889999999999998766554444555667788999999999999999999999964
No 28
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.4e-08 Score=82.49 Aligned_cols=121 Identities=17% Similarity=0.136 Sum_probs=101.5
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhh
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
+.+++.-+...|+---.+++.++| +-..||-+||.|-..+-+.-|+.+++++ .+.|.++..+-.+|.|+.++++.+||
T Consensus 372 HEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eA 451 (559)
T KOG1155|consen 372 HEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEA 451 (559)
T ss_pred HHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHH
Confidence 456677777888888888888888 7888999999999999999999999775 44678899999999999999999999
Q ss_pred hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+...-..+...+....++.-+|++|++++..++|+.+|++.++
T Consensus 452 iKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 452 IKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9865433322335677888999999999999999999999876
No 29
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.91 E-value=2.7e-09 Score=67.75 Aligned_cols=80 Identities=14% Similarity=0.088 Sum_probs=59.0
Q ss_pred cCChHHHHHHHhcCcc-ccc--CcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHH
Q 032655 52 GRHYRRPFHLLNSSKI-VLR--DLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLW 128 (136)
Q Consensus 52 ~g~~~~A~~~l~~~~l-~~~--~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~ 128 (136)
+|+|++|+.++++.-- .+. +....+.+|.|++++|+|++|++.... ....+....+.+++|+|+.++|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6899999998876432 232 445667779999999999999876654 211123456667889999999999999999
Q ss_pred HHHh
Q 032655 129 LVSC 132 (136)
Q Consensus 129 y~~A 132 (136)
|++|
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 9876
No 30
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.90 E-value=5.5e-08 Score=69.20 Aligned_cols=104 Identities=11% Similarity=0.056 Sum_probs=86.2
Q ss_pred HhccC-C-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHH
Q 032655 32 VAALT-N-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAI 108 (136)
Q Consensus 32 l~~~~-~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i 108 (136)
+..++ | ..+.+|-+|.-++..|+++.|..+.+-.- +++.+...++.+|-|+-.+|+|++|++.......-.|.....
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 34455 5 56789999999999999999999886643 367889999999999999999999999776543322445566
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+..|.|+.++|+.+.|..+|+.|+..
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999864
No 31
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=2.4e-08 Score=77.42 Aligned_cols=116 Identities=9% Similarity=-0.137 Sum_probs=94.6
Q ss_pred CChhhHHHHHHHHhccCC-C----hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655 20 HLYSSAIFFANEVAALTN-D----PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~----~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
++.+.++--..+++...| + +..++.+|.++...|++..|+..+++. .+.+.++..++.+|..+..+|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455666666677776444 3 345899999999999999999977554 4577889999999999999999999998
Q ss_pred hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.....+...|....+++.+|.++..+|++++|++.|+++++.
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 766554444556778899999999999999999999999864
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.89 E-value=7e-08 Score=76.16 Aligned_cols=50 Identities=6% Similarity=0.044 Sum_probs=23.4
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHH
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLL 62 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l 62 (136)
...+...++++.|+.+.++++...| +......++.++...|++.+|+..+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVA 164 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHH
Confidence 3444444555555555555544444 3333444444444455555444444
No 33
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.88 E-value=5.5e-08 Score=76.77 Aligned_cols=119 Identities=8% Similarity=-0.061 Sum_probs=68.8
Q ss_pred HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccC-cchHHHHHHHHHHccChhhh
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRD-LRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~-~~~~~l~a~c~~~l~~~~ea 91 (136)
.+..++++++|+-++++++...| +++..+.+|.++...|++.+|+..+++..- .+.+ ......++.++.+.|++++|
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 33455666666666666666665 444556666666666666666665554321 1111 23345556666666666666
Q ss_pred hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
...........| .......+|.++.+.|++++|...|+++++
T Consensus 269 ~~~l~~~~~~~p-~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 269 LEFLRRALEEYP-GADLLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred HHHHHHHHHhCC-CchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 553332221122 223346778888888888888888888775
No 34
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.87 E-value=2.3e-08 Score=79.68 Aligned_cols=113 Identities=11% Similarity=-0.031 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHc
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l 85 (136)
.|...-......++|+.|+...++++.+.| ++..++.+|.|+...|+|.+|+..+++. .+.+.++.+++.+|.+++.+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 355667778889999999999999999999 7888999999999999999999988665 45678889999999999999
Q ss_pred cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC
Q 032655 86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG 120 (136)
Q Consensus 86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~ 120 (136)
|+|++|+......+...|....+...+++|..++.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999988665433333445556667777776663
No 35
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.86 E-value=4.7e-08 Score=66.50 Aligned_cols=90 Identities=18% Similarity=0.152 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEE 84 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~ 84 (136)
..+..+...++..+++++|+.+.++++...| +++.++.+|.|++..|+|.+|...+++. ...+.++..++.+|.|+..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 4466777888899999999999999999999 8889999999999999999999988664 4567888999999999999
Q ss_pred ccChhhhhhhhh
Q 032655 85 LRSGTSVCRCSV 96 (136)
Q Consensus 85 l~~~~ea~~~~~ 96 (136)
.|++++|+....
T Consensus 98 ~g~~~~A~~~~~ 109 (135)
T TIGR02552 98 LGEPESALKALD 109 (135)
T ss_pred cCCHHHHHHHHH
Confidence 999999987554
No 36
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.82 E-value=1.6e-07 Score=70.57 Aligned_cols=133 Identities=10% Similarity=-0.135 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHH
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAK 80 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~ 80 (136)
.++.+.--.+--.++.+|++..|.---||++..+| ++..+..+|..|-..|+.+-|-+..+++ ++.+++-+..+.+|-
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~ 111 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhH
Confidence 34444455667789999999999999999999999 6778999999999999999999988654 567889999999999
Q ss_pred HHHHccChhhhhhhhhhhhc-c-cchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 81 CLEELRSGTSVCRCSVMLRL-L-KMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 81 c~~~l~~~~ea~~~~~~~~~-~-~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
=+...|+|+||.......+. + .+..+..+-++|.|..++|.+..|.+.|+++|++
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 99999999999876554332 2 3456677789999999999999999999999975
No 37
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.82 E-value=1.2e-07 Score=70.35 Aligned_cols=121 Identities=12% Similarity=-0.015 Sum_probs=94.3
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCC-ChH---HHHHHHHHHhcc--------CChHHHHHHHhcCcc-cccCcch-----
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTN-DPA---DVYMQAQALFLG--------RHYRRPFHLLNSSKI-VLRDLRF----- 74 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~---~~~~la~~l~~~--------g~~~~A~~~l~~~~l-~~~~~~~----- 74 (136)
-.-+...++++.|+-..++++..+| ++. .++.+|.|++.. |++..|+..+++.-. .+.+...
T Consensus 77 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 77 AYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 3456678999999999999999999 444 589999999987 889999998876432 2333222
Q ss_pred ------------HHHHHHHHHHccChhhhhhhhhhhhc---ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 75 ------------RYLAAKCLEELRSGTSVCRCSVMLRL---LKMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 75 ------------~~l~a~c~~~l~~~~ea~~~~~~~~~---~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
.+..|..+++.|++++|++.....++ ..|..+.+++.+|.+|..+|++++|+.+++...
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 157 RMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 13568899999999999986654433 235567889999999999999999999887653
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.81 E-value=5.8e-08 Score=86.09 Aligned_cols=125 Identities=11% Similarity=-0.071 Sum_probs=111.0
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChh
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
+..-+...|++++|+-+.++++.+.| +++....+|.++...|++.+|+..+++. .+.+.++...+.+|.++..+|+++
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 34456778999999999999999999 7888999999999999999999988765 446789999999999999999999
Q ss_pred hhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhccC
Q 032655 90 SVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEFT 136 (136)
Q Consensus 90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~~ 136 (136)
+|+......+...|..+.+.+..|.+.++.++++.|.+.|.++.+++
T Consensus 695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99987776655557788899999999999999999999999998764
No 39
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.80 E-value=5.5e-08 Score=81.71 Aligned_cols=117 Identities=9% Similarity=-0.045 Sum_probs=78.9
Q ss_pred cCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh---
Q 032655 19 KHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR--- 93 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~--- 93 (136)
.|+.++|+-.-.+++.++| .+++++.+|..+.-.|.++.|..+.++. ...+........+|-.+-+.|++++|+.
T Consensus 333 ~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 333 KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 4666666666666666666 4556666666666666666666655433 2233334445666666666666666642
Q ss_pred -------------------------------hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 94 -------------------------------CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 94 -------------------------------~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.....+.-+|.-+..+-++|.+|+..||..+|+..|++||++
T Consensus 413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 222223345788888999999999999999999999999986
No 40
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.80 E-value=3e-08 Score=78.97 Aligned_cols=95 Identities=14% Similarity=0.062 Sum_probs=81.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc
Q 032655 41 DVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL 119 (136)
Q Consensus 41 ~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~ 119 (136)
.+...|..++..|+|.+|+.++++. .+.+.++..++.+|.|+.++|++++|+......+...|....+++.+|.+|..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 4667899999999999999988665 446788899999999999999999999866554443455666788999999999
Q ss_pred CChHHHHHHHHHhhcc
Q 032655 120 GNCAQARLWLVSCDEF 135 (136)
Q Consensus 120 ~~~~~A~~~y~~AL~~ 135 (136)
|++++|+.+|++|+++
T Consensus 84 g~~~eA~~~~~~al~l 99 (356)
T PLN03088 84 EEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999875
No 41
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.79 E-value=5e-08 Score=64.28 Aligned_cols=96 Identities=9% Similarity=0.061 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcCcc-cccC---cchHHHHHHHHHHccChhhhhhhhhhhh--c-ccchHhHHHHH
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRD---LRFRYLAAKCLEELRSGTSVCRCSVMLR--L-LKMISSAICFL 111 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~---~~~~~l~a~c~~~l~~~~ea~~~~~~~~--~-~~~~~a~i~~l 111 (136)
++.+|.+|..++..|+|.+|+..++...- .+.+ +.+.+.+|.++++.|++++|.+...... . +.+....+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 45677788888888888888777755421 1222 3567778888888888888876544322 1 22233456677
Q ss_pred HHHHHHHcCChHHHHHHHHHhhc
Q 032655 112 RGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 112 ~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+|.++.++|+.++|..+|.++++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHH
Confidence 78888888888888888887765
No 42
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=6.1e-08 Score=74.96 Aligned_cols=96 Identities=14% Similarity=0.058 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA 118 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~ 118 (136)
+.+=.-|.-++.+++|.+|+... +...+++.++-.+...|.+|.+||+|+.|+..-...+...|..+-.|.-+|.+|-.
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34566788899999999999977 55577889999999999999999999999875544443345667777888999999
Q ss_pred cCChHHHHHHHHHhhcc
Q 032655 119 LGNCAQARLWLVSCDEF 135 (136)
Q Consensus 119 ~~~~~~A~~~y~~AL~~ 135 (136)
+|++++|+++|++||++
T Consensus 162 ~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALEL 178 (304)
T ss_pred cCcHHHHHHHHHhhhcc
Confidence 99999999999999986
No 43
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.75 E-value=2.4e-08 Score=60.73 Aligned_cols=64 Identities=13% Similarity=-0.018 Sum_probs=53.3
Q ss_pred cchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC-ChHHHHHHHHHhhcc
Q 032655 72 LRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG-NCAQARLWLVSCDEF 135 (136)
Q Consensus 72 ~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~-~~~~A~~~y~~AL~~ 135 (136)
+..++..|.+++..|+|++|+......++-.|..+.+++.+|.+|..+| ++++|+++|++||++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4577889999999999999988666544444667889999999999999 799999999999875
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=5.9e-08 Score=80.29 Aligned_cols=121 Identities=12% Similarity=0.015 Sum_probs=103.5
Q ss_pred HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc--ccc------CcchHHHHHHHHHHc
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLR------DLRFRYLAAKCLEEL 85 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~------~~~~~~l~a~c~~~l 85 (136)
+|...++++=|-++.-.++++.| +|--...+|.+.|..+.|.+|..++++... ... -.....++|..+.++
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 56677999999999999999999 777889999999999999999998877542 111 223479999999999
Q ss_pred cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++|++|++.....+.-.|..+.++--+|.||..+||.+.|+++|-+||-+
T Consensus 469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 99999999887766666677888889999999999999999999999964
No 45
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.74 E-value=2.3e-07 Score=83.46 Aligned_cols=123 Identities=11% Similarity=-0.104 Sum_probs=95.1
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChh
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
+-..+...++++.|+-..++++...| +++..+.+|.++...|++.+|+..++... ..+.++.....+|.++.++|+++
T Consensus 609 La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHH
Confidence 44556778999999999999999998 78888889999999999999998887543 23456677778899999999999
Q ss_pred hhhhhhhhhhc--c-cc---hHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 90 SVCRCSVMLRL--L-KM---ISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 90 ea~~~~~~~~~--~-~~---~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+|.+.....+. + .+ ..+.++...|.+++..|+.++|+..|++||.
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 98875443221 1 11 1334455679999999999999999999984
No 46
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.72 E-value=8.2e-08 Score=58.60 Aligned_cols=94 Identities=13% Similarity=0.034 Sum_probs=53.9
Q ss_pred HHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG 120 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~ 120 (136)
++.+|.+++..|++.+|+..++.. ...+.++...+..|.|+...|++++|.+.........|....+++.+|.++..+|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455566666666666666655442 2223344556666666666666666655433222222222345567777777777
Q ss_pred ChHHHHHHHHHhhcc
Q 032655 121 NCAQARLWLVSCDEF 135 (136)
Q Consensus 121 ~~~~A~~~y~~AL~~ 135 (136)
+.++|...+.++++.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 777777777776653
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.70 E-value=4.1e-08 Score=75.02 Aligned_cols=125 Identities=18% Similarity=0.100 Sum_probs=57.1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc---cccCcchHHHHHHHHHHc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI---VLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l---~~~~~~~~~l~a~c~~~l 85 (136)
+..++.. +..++|+.|+-.+++.+..+++|..+...++++...|+++++..++++..- .+.++.++...|.++.+.
T Consensus 81 ~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 159 (280)
T PF13429_consen 81 YERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQL 159 (280)
T ss_dssp --------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHC
T ss_pred ccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 3344444 567788888888887777666777777777777888888877777755221 235666777788888888
Q ss_pred cChhhhhhhh----------------------------------hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655 86 RSGTSVCRCS----------------------------------VMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVS 131 (136)
Q Consensus 86 ~~~~ea~~~~----------------------------------~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~ 131 (136)
|++++|+... .......|..+.++..+|.+|..+|++++|..+|.+
T Consensus 160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 160 GDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 8887775311 000011234556677889999999999999999999
Q ss_pred hhc
Q 032655 132 CDE 134 (136)
Q Consensus 132 AL~ 134 (136)
+++
T Consensus 240 ~~~ 242 (280)
T PF13429_consen 240 ALK 242 (280)
T ss_dssp HHH
T ss_pred ccc
Confidence 886
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.69 E-value=3.6e-07 Score=73.59 Aligned_cols=122 Identities=7% Similarity=-0.154 Sum_probs=100.0
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChh
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
...+..+..|+.+.|.-.-++.+...|+++-+..++.+ ..|++++++..+++.. -.+.++..+..+|+.+...|+|.
T Consensus 268 ~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 268 AMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 45677788999999999999999966688777777766 4499999999886542 25678888999999999999999
Q ss_pred hhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 90 SVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+|.+.........| ....+..+|.+++++|+.++|.++|+++|.+
T Consensus 346 ~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 346 EASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99887765544334 4556778999999999999999999999875
No 49
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.68 E-value=3.9e-07 Score=78.99 Aligned_cols=126 Identities=7% Similarity=-0.066 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHc
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l 85 (136)
++-.|++-..-.|+++.|+-..+++....| +......+|.++...|++.+|+.++++. .+.+.++.....+|.++.+.
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 344555555556666666666666555444 3334555666666666666666655442 22344555556666666666
Q ss_pred cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
|++++|++.....+...|.... ++.+|.++..+|+.++|+..|+++++
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666665544433322232333 55556666666666666666666554
No 50
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.66 E-value=4.5e-07 Score=78.60 Aligned_cols=125 Identities=6% Similarity=-0.144 Sum_probs=107.1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~ 86 (136)
+..+...+...+++++|+-..+++++..| +++....+|.++...|++.+|+..+++. ...+.+.. ++.+|.++...|
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence 45566678889999999999999999999 7888999999999999999999999775 33667777 999999999999
Q ss_pred ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
++++|+......+...|....+.+.+|.++...|..++|+..++++++
T Consensus 131 ~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 131 RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 999999877665555566677777889999999999999998886553
No 51
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.65 E-value=7.2e-07 Score=65.65 Aligned_cols=86 Identities=8% Similarity=0.004 Sum_probs=74.5
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHH-hccCC--hHHHHHHHhcC-cccccCcchHHHHHHHHHHccCh
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQAL-FLGRH--YRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l-~~~g~--~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~ 88 (136)
+.++..+++++|+-..++++.+.| +++.++.+|.++ +..|+ +.+|..++++. ..++.++..++++|.++++.|+|
T Consensus 81 ~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 81 EYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADY 160 (198)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence 357889999999999999999999 788899999986 67788 58999999665 44788999999999999999999
Q ss_pred hhhhhhhhhhh
Q 032655 89 TSVCRCSVMLR 99 (136)
Q Consensus 89 ~ea~~~~~~~~ 99 (136)
++|+......+
T Consensus 161 ~~Ai~~~~~aL 171 (198)
T PRK10370 161 AQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHHH
Confidence 99988655433
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.5e-07 Score=73.90 Aligned_cols=117 Identities=14% Similarity=0.056 Sum_probs=93.7
Q ss_pred cCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655 19 KHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
..+.+.|+-++.|++.++| ....|-+.|+=|.-..+-+.|+...+.+ .++|.+...+|-+|+.+.-++.+.=|+=...
T Consensus 343 r~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 343 RSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred HHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 3677888888899999988 4556888888888888888888877554 4567788888888888888888776654433
Q ss_pred hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 97 MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 97 ~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+...-.|..+.++--+|.||+++++.++|+.||+.|+..
T Consensus 423 kA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 423 KALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 333344678899999999999999999999999999865
No 53
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=1.2e-06 Score=71.61 Aligned_cols=122 Identities=15% Similarity=0.055 Sum_probs=103.0
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhh
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
......++++.|+-.-+-+++..| |+--+-+.+..+...|+.++|.+.+++.. +.+..+...+++|+.+++.|+++||
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 344556999999999999999999 77788889999999999999999997764 3666688999999999999999998
Q ss_pred hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.......-..|..+..|.++++.|..+|+..+|...+.+.+.+
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 87655444355678888999999999999999999998887654
No 54
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.58 E-value=7.8e-07 Score=63.58 Aligned_cols=95 Identities=7% Similarity=-0.033 Sum_probs=65.7
Q ss_pred HHHHHHhccCC-C-----hHHHHHHHHHHhccCChHHHHHHHhcCc-cccc---CcchHHHHHHHHHHccChhhhhhhhh
Q 032655 27 FFANEVAALTN-D-----PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR---DLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 27 f~aekl~~~~~-~-----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~---~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
-|+|....+.| + ....+.+|..+...|++++|+..+++.. ..+. .....+.+|.++..+|+|++|.....
T Consensus 17 ~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 17 VMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred HHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 57777776665 2 2347888999999999999999886642 1122 23578999999999999999987654
Q ss_pred hhhcccchHhHHHHHHHHHHHHcCC
Q 032655 97 MLRLLKMISSAICFLRGKAYEALGN 121 (136)
Q Consensus 97 ~~~~~~~~~a~i~~l~G~~~~~~~~ 121 (136)
..+...|.....+..+|.+|..+|+
T Consensus 97 ~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 97 QALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHhCcccHHHHHHHHHHHHHcCC
Confidence 4333223334455566777766655
No 55
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.57 E-value=1.9e-07 Score=56.45 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=53.0
Q ss_pred HHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHH
Q 032655 17 VSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAK 80 (136)
Q Consensus 17 l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~ 80 (136)
+.+++|+.|+...++++..+| +++..+.+|.|++..|++++|...+++... .+.++....+.|+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 568999999999999999999 888899999999999999999999988754 3344566666554
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=1.5e-07 Score=78.83 Aligned_cols=116 Identities=9% Similarity=-0.051 Sum_probs=79.4
Q ss_pred CChhhHHHHHHHHhccCCChH-HHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655 20 HLYSSAIFFANEVAALTNDPA-DVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSVM 97 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~~~~-~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~ 97 (136)
.++++|+-+++|++.++|... ..-++|.=+..+.+|+.|....+++- .+++|..++|-+|-.+.++++++.|+-...+
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqk 514 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQK 514 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHh
Confidence 445555555555555555322 23333444455555555555554432 2556778888888888888888888776666
Q ss_pred hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 98 LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 98 ~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.++.+|..+.|..-.|.+++++|+.++|+..|++|+.+
T Consensus 515 A~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 515 AVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred hhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 66677888888888899999999999999999998753
No 57
>PLN02789 farnesyltranstransferase
Probab=98.54 E-value=1.7e-06 Score=68.15 Aligned_cols=129 Identities=11% Similarity=0.005 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccC-ChHHHHHHHhcC-cccccCcchHHHHHH
Q 032655 4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGR-HYRRPFHLLNSS-KIVLRDLRFRYLAAK 80 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g-~~~~A~~~l~~~-~l~~~~~~~~~l~a~ 80 (136)
++.+-+|.++. ..+.++.|+...++++.++| +...|+..+.++...| .+++++..+.+. ...+++..+++..+.
T Consensus 38 ~a~~~~ra~l~---~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~ 114 (320)
T PLN02789 38 EAMDYFRAVYA---SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHH
Confidence 34445555543 46799999999999999999 7888999999999999 589999988654 336788889999999
Q ss_pred HHHHccCh--hhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 81 CLEELRSG--TSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 81 c~~~l~~~--~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++.++|+. +++++.....+...|....++.-+|-+++.+|++++|++++.++|+.
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999974 44444443334444556778899999999999999999999999863
No 58
>PRK15331 chaperone protein SicA; Provisional
Probab=98.53 E-value=7.4e-07 Score=63.85 Aligned_cols=90 Identities=11% Similarity=0.094 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhh--h---cccchHhHHHHHH
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVML--R---LLKMISSAICFLR 112 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~--~---~~~~~~a~i~~l~ 112 (136)
-+.+|-.|.-+|..|++++|..+++-.-. ++.++..+.-+|-|+-.+|+|++|++..... + |+.| .|-.
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p-----~f~a 111 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP-----VFFT 111 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc-----cchH
Confidence 34455556666666666655554443221 2344445555555555666666655533221 1 1122 2444
Q ss_pred HHHHHHcCChHHHHHHHHHhh
Q 032655 113 GKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 113 G~~~~~~~~~~~A~~~y~~AL 133 (136)
|.||..+|+.++|..||..++
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~ 132 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVN 132 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 566666666666666655554
No 59
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.50 E-value=2.3e-07 Score=57.72 Aligned_cols=64 Identities=13% Similarity=-0.041 Sum_probs=49.1
Q ss_pred cchHHHHHHHHHHccChhhhhhhhhhhh------c-ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 72 LRFRYLAAKCLEELRSGTSVCRCSVMLR------L-LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 72 ~~~~~l~a~c~~~l~~~~ea~~~~~~~~------~-~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..+.+.+|.++..+|+|++|++.....+ . ..+..+..+..+|.+|..+|++++|+++|++|+++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3577888999999999999876443211 1 22345677789999999999999999999999975
No 60
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.47 E-value=7.7e-07 Score=53.46 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=46.7
Q ss_pred HHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 76 YLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 76 ~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|..|..+++.|+|++|+......+...|....+++.+|.++..+|++++|+..|+++++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788888888888887766555555778888888888888888888888888888764
No 61
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.47 E-value=1.7e-06 Score=66.50 Aligned_cols=96 Identities=10% Similarity=-0.042 Sum_probs=77.0
Q ss_pred hHHHHHHHHHH-hccCChHHHHHHHhcCcc-cccC---cchHHHHHHHHHHccChhhhhhhhhhhhc---ccchHhHHHH
Q 032655 39 PADVYMQAQAL-FLGRHYRRPFHLLNSSKI-VLRD---LRFRYLAAKCLEELRSGTSVCRCSVMLRL---LKMISSAICF 110 (136)
Q Consensus 39 ~~~~~~la~~l-~~~g~~~~A~~~l~~~~l-~~~~---~~~~~l~a~c~~~l~~~~ea~~~~~~~~~---~~~~~a~i~~ 110 (136)
....|..|..+ +..|+|.+|+..+++.-- .+.+ +..+|.+|.+++..|+|++|+......+. +.|....+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45789999998 557999999988766432 2333 47899999999999999999987654432 3455677788
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhc
Q 032655 111 LRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 111 l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.+|.++..+|+.++|+..|++.++
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 899999999999999999998875
No 62
>PRK15331 chaperone protein SicA; Provisional
Probab=98.45 E-value=1.9e-06 Score=61.72 Aligned_cols=98 Identities=12% Similarity=0.212 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHH
Q 032655 2 REEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAA 79 (136)
Q Consensus 2 ~~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a 79 (136)
.++.++.+-+.-...-.+|++++|.-++.-|+..+| +++-|.-||-|+-..|+|..|+.+..-+ .+...+|...|-.|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 378889999999999999999999999999999999 9999999999999999999999977443 44668888999999
Q ss_pred HHHHHccChhhhhhhhhhhh
Q 032655 80 KCLEELRSGTSVCRCSVMLR 99 (136)
Q Consensus 80 ~c~~~l~~~~ea~~~~~~~~ 99 (136)
.|++.+|+.++|.+......
T Consensus 113 qC~l~l~~~~~A~~~f~~a~ 132 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVN 132 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 99999999999998765443
No 63
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.45 E-value=6.8e-06 Score=64.18 Aligned_cols=90 Identities=14% Similarity=-0.066 Sum_probs=47.3
Q ss_pred HHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhc--cc--chHhHHHHHHHHHHHHc
Q 032655 45 QAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL--LK--MISSAICFLRGKAYEAL 119 (136)
Q Consensus 45 la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~--~~--~~~a~i~~l~G~~~~~~ 119 (136)
+|.++...|++.+|...+++. .+.+.++.....+|.++.+.|++++|+......+. +. ......+..+|.++..+
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 344555555555555544332 22334444555555555555555555543332221 11 11223344678888888
Q ss_pred CChHHHHHHHHHhhc
Q 032655 120 GNCAQARLWLVSCDE 134 (136)
Q Consensus 120 ~~~~~A~~~y~~AL~ 134 (136)
|++++|...|.+++.
T Consensus 200 G~~~~A~~~~~~~~~ 214 (355)
T cd05804 200 GDYEAALAIYDTHIA 214 (355)
T ss_pred CCHHHHHHHHHHHhc
Confidence 888888888877653
No 64
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.44 E-value=1.5e-06 Score=52.78 Aligned_cols=86 Identities=12% Similarity=0.064 Sum_probs=72.5
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~ 87 (136)
..+...+...++++.|+.+.++++...| ++..++.+|.++...|+++.|+..++.. ...+.+....+..|.++...|+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 3455566778999999999999999998 5678899999999999999999988664 3355667889999999999999
Q ss_pred hhhhhhhh
Q 032655 88 GTSVCRCS 95 (136)
Q Consensus 88 ~~ea~~~~ 95 (136)
+++|.+..
T Consensus 84 ~~~a~~~~ 91 (100)
T cd00189 84 YEEALEAY 91 (100)
T ss_pred HHHHHHHH
Confidence 99987543
No 65
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.44 E-value=2.1e-06 Score=65.34 Aligned_cols=113 Identities=17% Similarity=0.051 Sum_probs=78.8
Q ss_pred hhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhhhcc
Q 032655 23 SSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLL 101 (136)
Q Consensus 23 ~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~ 101 (136)
..|.-.-=+.+..+|+..+++.++..++..|+-+..+.++.+..+ .+++.......|+..+..|+|.+|+....+....
T Consensus 50 ~~a~~al~~~~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred hHHHHHHHHHHhcCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 334444445556667555567788888888887777777766543 3344445555788888888888887766655545
Q ss_pred cchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 102 KMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 102 ~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.|..+..+..+|-+|.+.|++++|..-|.+|+++
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L 163 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL 163 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh
Confidence 5667777778888888888888888888888775
No 66
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.41 E-value=6.8e-06 Score=65.03 Aligned_cols=98 Identities=11% Similarity=-0.082 Sum_probs=84.9
Q ss_pred ChHHHHH---HHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHH
Q 032655 38 DPADVYM---QAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGK 114 (136)
Q Consensus 38 ~~~~~~~---la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~ 114 (136)
.-.||+| +|.||++.|-+.+|-+-++++.-...+++-..++++.|...++.+.|+.....-+|..|..-++.+=+.+
T Consensus 219 ~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 219 CTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQAR 298 (478)
T ss_pred chHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHH
Confidence 3568888 5889999999999999998765456899999999999999999999987666556667777777777899
Q ss_pred HHHHcCChHHHHHHHHHhhcc
Q 032655 115 AYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 115 ~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++++||+.++|++.|+.+|+.
T Consensus 299 i~eam~~~~~a~~lYk~vlk~ 319 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKL 319 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhc
Confidence 999999999999999999974
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.40 E-value=9.2e-06 Score=67.82 Aligned_cols=131 Identities=14% Similarity=0.035 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCL 82 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~ 82 (136)
++.-+-=+.+++...|+++.|+.+.|+++..+| .++-.+..|.+|-..|++..|...++.+. ++..+--.-.-.++-+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 344455566777788899999999999999999 67788888999999999999988886654 3333333334455667
Q ss_pred HHccChhhhhhhhhhh-h---cc---cchHhHHHHHH--HHHHHHcCChHHHHHHHHHhhcc
Q 032655 83 EELRSGTSVCRCSVML-R---LL---KMISSAICFLR--GKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 83 ~~l~~~~ea~~~~~~~-~---~~---~~~~a~i~~l~--G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++.|+.++|.+...+. . ++ ...--.+||.. |.+|.+.|++..|...|...+++
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8889999988755432 1 11 12234467765 99999999999999999887764
No 68
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=5.6e-06 Score=72.71 Aligned_cols=127 Identities=15% Similarity=0.054 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCc------------
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDL------------ 72 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~------------ 72 (136)
.+-+..++..+.+.+++++|+-.++..+..+| .+.-.|.+|..++..+++.++.-+ +-..+.+.+.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHHHHHHHH
Confidence 34566788888899999999999999999999 778899999999999999888664 2222223333
Q ss_pred -------chHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 73 -------RFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 73 -------~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.+.+.+|.||-++|+++++.......+.-.|..+.+.-..|-.|... +.++|.+.|++|++
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 68899999999999999998765543322255666777889999888 99999999999985
No 69
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.38 E-value=6.2e-06 Score=66.48 Aligned_cols=123 Identities=12% Similarity=0.082 Sum_probs=97.2
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc---Ccc---------------------
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS---SKI--------------------- 67 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~---~~l--------------------- 67 (136)
.+.++..++++.|+-..+++....| +|.....++.+|...|+|++|+.++.. ...
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999 888899999999999999999954422 111
Q ss_pred -------------------cccCcchHHHHHHHHHHccChhhhhhhhh------------h---h---------------
Q 032655 68 -------------------VLRDLRFRYLAAKCLEELRSGTSVCRCSV------------M---L--------------- 98 (136)
Q Consensus 68 -------------------~~~~~~~~~l~a~c~~~l~~~~ea~~~~~------------~---~--------------- 98 (136)
.+.++.....+|+.+...|+.++|.+... . .
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHH
Confidence 11255677888999999999999853210 0 0
Q ss_pred -hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 99 -RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 99 -~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
....|..+...+.+|+++.+.|++.+|.++|+++++.
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1134666777889999999999999999999999864
No 70
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.37 E-value=9.7e-06 Score=65.48 Aligned_cols=125 Identities=10% Similarity=-0.050 Sum_probs=93.9
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCCChHHH---HHHHHHHhccCChHHHHHHHhcC-cccccCc--chHHHHHHHHH
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTNDPADV---YMQAQALFLGRHYRRPFHLLNSS-KIVLRDL--RFRYLAAKCLE 83 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~---~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~--~~~~l~a~c~~ 83 (136)
...+...+..|+++.|+-..++.+...|++... .+........++.+.++..+++. +..+.++ .....+|+.++
T Consensus 267 ~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~ 346 (409)
T TIGR00540 267 IALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM 346 (409)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 345677888999999999999999999955531 23333334457888888888654 3356777 66778999999
Q ss_pred HccChhhhhhhhh--hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 84 ELRSGTSVCRCSV--MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 84 ~l~~~~ea~~~~~--~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.|+|++|.+... ......| ...++.-+|.++.++|+.++|.++|+++|..
T Consensus 347 ~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 347 KHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999988666 3333233 3333557799999999999999999999864
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=5e-06 Score=69.41 Aligned_cols=127 Identities=16% Similarity=0.110 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~ 83 (136)
.++.|-+-+..+..++.|+.|+..++|++...| ++++++..-.|+...++|+.|+.+++....+.....+.+=.|=|.+
T Consensus 11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY 90 (652)
T ss_pred cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH
Confidence 345677778888899999999999999999999 5556888899999999999999999877653444444478999999
Q ss_pred HccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
++++.+||+..... .+ +..-.+..|+++++-++|++++|...|+.-++
T Consensus 91 rlnk~Dealk~~~~-~~--~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 91 RLNKLDEALKTLKG-LD--RLDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred HcccHHHHHHHHhc-cc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999876551 11 11233567999999999999999999987654
No 72
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.36 E-value=9.2e-06 Score=65.75 Aligned_cols=119 Identities=18% Similarity=0.098 Sum_probs=98.4
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChh
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
.++......+.++.|+-+.+++....| +.++.+|.++...++-.+|+.++.+.-. .+.+.....+.|+.|.+.|+|+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDP--EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCC--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 344555556899999999999998775 5678899999999999999999976542 4567788889999999999999
Q ss_pred hhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655 90 SVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVS 131 (136)
Q Consensus 90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~ 131 (136)
.|+........-.|..-..|+.++++|..+|++++|......
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 999877766555677778899999999999999999876543
No 73
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.33 E-value=6.3e-06 Score=54.07 Aligned_cols=89 Identities=11% Similarity=-0.001 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCCC----hHHHHHHHHHHhccCChHHHHHHHhcCc-cccc---CcchHHHHH
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTND----PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR---DLRFRYLAA 79 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~---~~~~~~l~a 79 (136)
-+-.+......+++++.|+-..+++...+|+ ++..+.+|.+++..|+|.+|+..++... ..+. .+.+++..|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3556777888899999999999999999883 4578999999999999999999887643 2233 367899999
Q ss_pred HHHHHccChhhhhhhhh
Q 032655 80 KCLEELRSGTSVCRCSV 96 (136)
Q Consensus 80 ~c~~~l~~~~ea~~~~~ 96 (136)
.++.++|++++|.....
T Consensus 84 ~~~~~~~~~~~A~~~~~ 100 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQ 100 (119)
T ss_pred HHHHHhCChHHHHHHHH
Confidence 99999999999987554
No 74
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.33 E-value=1.8e-05 Score=69.36 Aligned_cols=122 Identities=7% Similarity=-0.146 Sum_probs=70.5
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHH--HHHHHHccC
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLA--AKCLEELRS 87 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~--a~c~~~l~~ 87 (136)
.......++|+++.|+...++++...| ++..++.++..+...|++.+|+.+++++. .+.+....-+. |..+...|+
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCC
Confidence 333445566888888888888888777 44455577777777788888887777765 33444444455 667777788
Q ss_pred hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
|++|++.....+...|..+.+++-++.+|-..++.++|++.+++++
T Consensus 118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~ 163 (822)
T PRK14574 118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA 163 (822)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc
Confidence 8877654332222222222333333444444444444444444443
No 75
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.31 E-value=4.2e-06 Score=59.43 Aligned_cols=96 Identities=13% Similarity=0.101 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcCc-cccc---CcchHHHHHHHHHHccChhhhhhhhhhhhcccc-------hHhH
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR---DLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM-------ISSA 107 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~---~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~-------~~a~ 107 (136)
...++.+|.++..+|+|..|+..+++.. +.+. .+...+.+|.++...|++++|++.....+...| .-+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 4467888999999999999999887652 2222 234788999999999999999875543222111 2333
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 108 ICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 108 i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
++.++|..+..+|++++|...|.+|+.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 444555555599998877777776654
No 76
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.26 E-value=1.6e-06 Score=52.08 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=43.7
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~ 65 (136)
-..++..++|+.|+-..++++...| +++.++.+|.|++..|++.+|+..++..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556778899999999999999988 7788889999999999999998887664
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=9.6e-06 Score=66.97 Aligned_cols=113 Identities=15% Similarity=0.047 Sum_probs=86.0
Q ss_pred hhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhhhhhhhhhc
Q 032655 23 SSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL 100 (136)
Q Consensus 23 ~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~ 100 (136)
+.++--.++...+.| -.+.--..|+++|..|+|..|+..+.+ ...+|.+...+...|.|+.++|.+.+|+......+.
T Consensus 341 Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 341 EKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444444444 223345569999999999999987755 344678888999999999999999999875544333
Q ss_pred ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 101 LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 101 ~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
-.|.....|+-+|.++..+.++.+|.++|.++|++
T Consensus 421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777888899999999999999999999975
No 78
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.24 E-value=1.9e-05 Score=65.93 Aligned_cols=114 Identities=15% Similarity=-0.072 Sum_probs=84.6
Q ss_pred ChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC--------hHHHHHHHhcC-c--ccccCcchHHHHHHHHHHccCh
Q 032655 21 LYSSAIFFANEVAALTN-DPADVYMQAQALFLGRH--------YRRPFHLLNSS-K--IVLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 21 ~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~--------~~~A~~~l~~~-~--l~~~~~~~~~l~a~c~~~l~~~ 88 (136)
....|+-+.+++++++| ....+-.++.|+..... ...+...+++. . .++..+..+..+|......|++
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 37799999999999999 55556666666655422 23444444432 1 1445667788888898999999
Q ss_pred hhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 89 TSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 89 ~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++|.......++-.| .+..+.++|+++...|+.++|++.|++|+.+
T Consensus 437 ~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 437 DEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999987766554344 4667789999999999999999999999875
No 79
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=3.3e-05 Score=60.90 Aligned_cols=128 Identities=15% Similarity=0.042 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCCChH------HHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHH
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTNDPA------DVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAK 80 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~------~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~ 80 (136)
-++.++.-|=..-.|+.|+-.|+++..+.|.+- -..-+|+.+....+.++|..+++++- .++++...-.+.|+
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~ 222 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGR 222 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhH
Confidence 355566666667889999999999999998432 24558999999999999999997754 47788899999999
Q ss_pred HHHHccChhhhhhhhhhhhccc-chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 81 CLEELRSGTSVCRCSVMLRLLK-MISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 81 c~~~l~~~~ea~~~~~~~~~~~-~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.....|+|+.|++.......++ ...+.+.-.+-.||..+|+.++...+.+++.+.
T Consensus 223 v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 223 VELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 9999999999998766544433 345666667889999999999999999987653
No 80
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.22 E-value=3.6e-06 Score=51.46 Aligned_cols=64 Identities=20% Similarity=0.213 Sum_probs=52.0
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHH
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYL 77 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l 77 (136)
.-++.+++|+.|+.+.++++.++| ++..++.+|.|++..|+|..|+..++..- ..+.++...-+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 346789999999999999999999 78889999999999999999999887653 23444444433
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=1.5e-06 Score=68.60 Aligned_cols=121 Identities=9% Similarity=-0.055 Sum_probs=98.0
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhh
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
+-+-..+++++|+.+-..++.+.| +.|.+-..|.-||-.|+++-|+.+.++... --.+++-....|.||+-.++++-+
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhh
Confidence 334455789999999999999999 899999999999999999999998876432 237889999999999999999998
Q ss_pred hhhhhhhhc---ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 92 CRCSVMLRL---LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 92 ~~~~~~~~~---~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+......+. +....+.+||++|.+.-..|++..|..||+-||.
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 764433222 2346788899999988889999999999888874
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.21 E-value=2.8e-05 Score=60.67 Aligned_cols=120 Identities=10% Similarity=-0.088 Sum_probs=86.7
Q ss_pred HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhc----cCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccCh
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFL----GRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~----~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~ 88 (136)
.....++++.|+-+.++++...| ++..+.. +..++. .|+...+...++... ..+.........|.++...|++
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 45667999999999999999999 4444442 444433 455566666665421 1233445666788899999999
Q ss_pred hhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 89 TSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 89 ~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++|+......+...|.....+..+|.++..+|+.++|+.+|.++++.
T Consensus 131 ~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 131 DRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 99988766554444545667788899999999999999999998864
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.21 E-value=2.7e-05 Score=64.85 Aligned_cols=131 Identities=10% Similarity=-0.040 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhcc--------CCChHHHHH-HHHHHhccCChHHHHHHHhcCccc------c
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAAL--------TNDPADVYM-QAQALFLGRHYRRPFHLLNSSKIV------L 69 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~--------~~~~~~~~~-la~~l~~~g~~~~A~~~l~~~~l~------~ 69 (136)
...-++-+...|..+++|+.|+-++.+++.. .|....... +|..|...++|.+|+.+++++.-+ +
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3445667899999999999999999999987 454445444 999999999999999988774321 1
Q ss_pred cCc---chHHHHHHHHHHccChhhhhhhhh----hh--hc--ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 70 RDL---RFRYLAAKCLEELRSGTSVCRCSV----ML--RL--LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 70 ~~~---~~~~l~a~c~~~l~~~~ea~~~~~----~~--~~--~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.|+ .....+|..+.+.|+|+||..... +. .. ..|.-+..+...|.+++.++.+++|+..|+++|++
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 233 457788999999999999975322 11 11 23456666778999999999999999999999986
No 84
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=3.1e-06 Score=69.42 Aligned_cols=116 Identities=13% Similarity=0.127 Sum_probs=89.5
Q ss_pred CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655 20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVM 97 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~ 97 (136)
-.+.+|-.+||.++..+- ++......|..-|.+|+++.|.+..+.+.- +.++....|..|..+.++|+.+||++...+
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK 549 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence 467889999999999887 899999999999999999999998876543 447778899999999999999999986432
Q ss_pred hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 98 LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 98 ~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
--......+.+.+.+..+|+-+++...|+++|.++..+
T Consensus 550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 11011135556667777777777777777777776543
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.18 E-value=4.7e-05 Score=63.46 Aligned_cols=125 Identities=12% Similarity=0.003 Sum_probs=94.4
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccC----C--ChH---HHHHHHHHHhccCChHHHHHHHhcCc-c--------cccCc
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALT----N--DPA---DVYMQAQALFLGRHYRRPFHLLNSSK-I--------VLRDL 72 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~----~--~~~---~~~~la~~l~~~g~~~~A~~~l~~~~-l--------~~~~~ 72 (136)
.+-..+..+++|+.|++..++++++. + +|. ....||..|+..|+|.+|..+++++- + .+.-.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 46667888999999999999999886 2 333 36678999999999999988886632 1 11122
Q ss_pred chHHHHHHHHHHccChhhhhhhhh----hhhc----ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 73 RFRYLAAKCLEELRSGTSVCRCSV----MLRL----LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 73 ~~~~l~a~c~~~l~~~~ea~~~~~----~~~~----~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
......+..+--.+++++|..... +..+ .++..+.+.-.+|.+|..+|++++|.+.|++|+..
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 345666777778899999976332 1221 23467788889999999999999999999999864
No 86
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.17 E-value=3.7e-05 Score=59.14 Aligned_cols=89 Identities=8% Similarity=-0.035 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-C---hHHHHHHHHHHhccCChHHHHHHHhcC----cccccCcchHHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-D---PADVYMQAQALFLGRHYRRPFHLLNSS----KIVLRDLRFRYLAAK 80 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~---~~~~~~la~~l~~~g~~~~A~~~l~~~----~l~~~~~~~~~l~a~ 80 (136)
+...+...+..++|+.|+..+++.+...| + |+..|++|.+|+..|+|..|+..+++. ...+..+.+++..|.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33444444567999999999999999999 3 578999999999999999999877553 334567889999999
Q ss_pred HHHHccChhhhhhhhhh
Q 032655 81 CLEELRSGTSVCRCSVM 97 (136)
Q Consensus 81 c~~~l~~~~ea~~~~~~ 97 (136)
|+.++|++++|......
T Consensus 226 ~~~~~g~~~~A~~~~~~ 242 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQ 242 (263)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 99999999999876543
No 87
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.14 E-value=4.3e-05 Score=61.73 Aligned_cols=119 Identities=13% Similarity=0.034 Sum_probs=96.2
Q ss_pred HHcCChhhHHHHHHHHhccCCChH-HHHHHHHHHhccCChHHHHHHHhcCc-ccccC-cchHHHHHHHHHHccChhhhhh
Q 032655 17 VSKHLYSSAIFFANEVAALTNDPA-DVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD-LRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 17 l~~~~~~~Alf~aekl~~~~~~~~-~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~-~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
+..|+|+.|.-...+.....|+|. .....|......|++.+|.+++++.. ..+.+ .......++.+...|++++|.+
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 446999999999999999999654 56677999999999999999997742 12222 2455667999999999999988
Q ss_pred hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
....-....|....+..+.|.+|..+|+.++|.+.+.+.++.
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~ 216 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA 216 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 766544445667788899999999999999999999887753
No 88
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.13 E-value=7.8e-05 Score=56.83 Aligned_cols=119 Identities=10% Similarity=-0.044 Sum_probs=84.1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHHHHcc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~~~l~ 86 (136)
+...+...+.+|+|..|+-.+.|+..+.| +.+.+-.+|-+|-+.|++..|-..+ +...+.+..+......|-.++--|
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence 44466667778888888888888888887 7777888888888888888886544 555666677778888888888888
Q ss_pred ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHH
Q 032655 87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARL 127 (136)
Q Consensus 87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~ 127 (136)
+++.|...........+..+.+..++..+.-.+|++.+|..
T Consensus 183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 183 DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 88887654433222223355666677777777777777754
No 89
>PLN02789 farnesyltranstransferase
Probab=98.13 E-value=5.2e-05 Score=59.84 Aligned_cols=126 Identities=9% Similarity=-0.076 Sum_probs=97.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCCh--HHHHHHHhc-CcccccCcchHHHHHHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHY--RRPFHLLNS-SKIVLRDLRFRYLAAKCLEE 84 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~--~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~ 84 (136)
.|..+-..+. ..+++|+-+.++++..+| +...|++.+.++...|++ .+++.++++ ...++++..+++-.+.++..
T Consensus 76 ~R~~iL~~L~-~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~ 154 (320)
T PLN02789 76 FRRLCLEALD-ADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT 154 (320)
T ss_pred HHHHHHHHcc-hhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3444443331 258999999999999999 888999999999988874 678888844 45577999999999999999
Q ss_pred ccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc---CCh----HHHHHHHHHhhcc
Q 032655 85 LRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL---GNC----AQARLWLVSCDEF 135 (136)
Q Consensus 85 l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~---~~~----~~A~~~y~~AL~~ 135 (136)
+|+|+++++.....+...+...++++.+|.+..++ |.. ++++++.++++++
T Consensus 155 l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~ 212 (320)
T PLN02789 155 LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA 212 (320)
T ss_pred hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Confidence 99999998866554443445677888999998877 333 4678888888753
No 90
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.13 E-value=0.00011 Score=52.39 Aligned_cols=85 Identities=8% Similarity=-0.045 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCCC----hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTND----PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL 82 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~----~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~ 82 (136)
-+..+...+...+++++|+.+.++++...|+ +..++.+|.++...|+|++|+..+++. ...+.+......+|.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3455566778889999999999999988873 246888999999999999999988654 44567788889999999
Q ss_pred HHccChhhhh
Q 032655 83 EELRSGTSVC 92 (136)
Q Consensus 83 ~~l~~~~ea~ 92 (136)
..+|+...+.
T Consensus 117 ~~~g~~~~a~ 126 (172)
T PRK02603 117 HKRGEKAEEA 126 (172)
T ss_pred HHcCChHhHh
Confidence 9999876653
No 91
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.13 E-value=5.5e-05 Score=55.66 Aligned_cols=129 Identities=13% Similarity=0.019 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-C---hHHHHHHHHHHhccCChHHHHHHHhcC----cccccCcchHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-D---PADVYMQAQALFLGRHYRRPFHLLNSS----KIVLRDLRFRYL 77 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~---~~~~~~la~~l~~~g~~~~A~~~l~~~----~l~~~~~~~~~l 77 (136)
-+.+-..-...+..|+|..|+-..+++....| + ++..+.+|.++|..|+|..|+..++.. .-.+..+.+.|+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 34566667788899999999999999999998 2 567999999999999999999877663 223344568999
Q ss_pred HHHHHHHccChh-----------hhhhhhhhh----------------hccc-chHhHHHHHHHHHHHHcCChHHHHHHH
Q 032655 78 AAKCLEELRSGT-----------SVCRCSVML----------------RLLK-MISSAICFLRGKAYEALGNCAQARLWL 129 (136)
Q Consensus 78 ~a~c~~~l~~~~-----------ea~~~~~~~----------------~~~~-~~~a~i~~l~G~~~~~~~~~~~A~~~y 129 (136)
.|.|.+++.+-- +|....... +..+ ...+.--+.+|+.|.+.|++..|+..|
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 999998875322 232211100 0011 123333456688888888888888888
Q ss_pred HHhhc
Q 032655 130 VSCDE 134 (136)
Q Consensus 130 ~~AL~ 134 (136)
+..++
T Consensus 165 ~~v~~ 169 (203)
T PF13525_consen 165 QYVIE 169 (203)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 92
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.12 E-value=2.9e-06 Score=51.37 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc-Chhhhhhh
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR-SGTSVCRC 94 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~-~~~ea~~~ 94 (136)
++.++.+|.+++..|+|.+|+..+++. .+++.++..++.+|.|+.++| ++++|+..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~ 60 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIED 60 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHH
Confidence 455667777777777777777766443 335566677777777777777 57776543
No 93
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=4.7e-05 Score=59.17 Aligned_cols=91 Identities=13% Similarity=-0.051 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCL 82 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~ 82 (136)
.-++|+.-=-.....++|..|+-.-++++.++| ++--....|.+|...|+|..|++-+++ ..+++.+...+.-+|.++
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~ 159 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 456677777778889999999999999999999 777777899999999999999996655 456888999999999999
Q ss_pred HHccChhhhhhhh
Q 032655 83 EELRSGTSVCRCS 95 (136)
Q Consensus 83 ~~l~~~~ea~~~~ 95 (136)
..+|+|++|++..
T Consensus 160 ~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 160 LALGKYEEAIEAY 172 (304)
T ss_pred HccCcHHHHHHHH
Confidence 9999999998764
No 94
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.11 E-value=6.1e-05 Score=51.43 Aligned_cols=104 Identities=14% Similarity=-0.009 Sum_probs=75.7
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCCC----hHHHHHHHHHHhccCChHHHHHHHhcCcc-ccc---CcchHHHHHHHHHH
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTND----PADVYMQAQALFLGRHYRRPFHLLNSSKI-VLR---DLRFRYLAAKCLEE 84 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~~----~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~---~~~~~~l~a~c~~~ 84 (136)
-+-+-..|+.+.|+-+.+++++..++ .+.+..+|.++...|++++|+.++++..- .+. +......+|.++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34455679999999999999987542 33588899999999999999999876432 233 55678889999999
Q ss_pred ccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 85 LRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 85 l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
+|+++||++.....+. .. +..+++|+.+|.+-
T Consensus 88 ~gr~~eAl~~~l~~la---~~-------------~~~y~ra~~~ya~~ 119 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA---ET-------------LPRYRRAIRFYADE 119 (120)
T ss_pred CCCHHHHHHHHHHHHH---HH-------------HHHHHHHHHHHHhh
Confidence 9999998875543222 01 11677777777654
No 95
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.10 E-value=4e-05 Score=58.75 Aligned_cols=93 Identities=13% Similarity=0.023 Sum_probs=75.7
Q ss_pred HHHHHHHHhccCChHHHHHHH----hcCcccccCcchHHHHHHHHHHccChhhhhhhhhhh---hcccchHhHHHHHHHH
Q 032655 42 VYMQAQALFLGRHYRRPFHLL----NSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVML---RLLKMISSAICFLRGK 114 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l----~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~---~~~~~~~a~i~~l~G~ 114 (136)
.|..|.-++++|+|..|...+ +++.-....+.+.|-+|.|++.+|+|++|....... ....|-.+.+.+-+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 799999999999999997755 455445567889999999999999999997654322 2234556678889999
Q ss_pred HHHHcCChHHHHHHHHHhhc
Q 032655 115 AYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 115 ~~~~~~~~~~A~~~y~~AL~ 134 (136)
+..++||.++|...|.+..+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 96
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=1.6e-05 Score=65.51 Aligned_cols=120 Identities=10% Similarity=-0.028 Sum_probs=66.9
Q ss_pred HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655 16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
+++.++.+.-.-.++++..++| +|+-.|+-||.++..+||++|+.=+++. .+++.+.-...=++-..+++++++++..
T Consensus 370 y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~ 449 (606)
T KOG0547|consen 370 YADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK 449 (606)
T ss_pred HhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555 4444444555555555555555544332 2333444333334444444454444433
Q ss_pred hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.........|..+.++-+-|.++-.++.+..|++.|..|.++
T Consensus 450 ~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 450 TFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 222111134555666677899999999999999999999865
No 97
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=7.2e-05 Score=61.32 Aligned_cols=82 Identities=21% Similarity=0.066 Sum_probs=73.4
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChh
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
.++-.+..++.++|+-.++|++++.| ++--++.+|+.|...|++.+|+..|+.... ++.++..+.++|++|-++|+-.
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 45667889999999999999999999 577899999999999999999999977654 6789999999999999999988
Q ss_pred hhhh
Q 032655 90 SVCR 93 (136)
Q Consensus 90 ea~~ 93 (136)
++..
T Consensus 426 ~a~~ 429 (484)
T COG4783 426 EALL 429 (484)
T ss_pred HHHH
Confidence 8754
No 98
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.08 E-value=5.7e-05 Score=64.78 Aligned_cols=119 Identities=13% Similarity=0.047 Sum_probs=96.6
Q ss_pred HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHHHHccChhhhh
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
-++..++.+.|.+.-..+..++| .+.-+|..|.++-..|++.+|...+ ....++|.|..+.--+|.|+.+.|+-.-|.
T Consensus 659 ~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~ 738 (799)
T KOG4162|consen 659 LFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAE 738 (799)
T ss_pred HHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHH
Confidence 34555667777778888888888 7778888999999999999999966 455668999999999999999999666666
Q ss_pred hhhhh----hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 93 RCSVM----LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 93 ~~~~~----~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.+-. .+| |.--.+||.+|.+++++|+.+.|++||..|+.+
T Consensus 739 ~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 739 KRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 54322 123 345568999999999999999999999999864
No 99
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.06 E-value=7.9e-06 Score=49.21 Aligned_cols=67 Identities=15% Similarity=0.056 Sum_probs=50.0
Q ss_pred HhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHH
Q 032655 49 LFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKA 115 (136)
Q Consensus 49 l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~ 115 (136)
++..|+|.+|+.++++. ...+.+...++.+|.|+++.|++++|...........|..+.+..+++++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 35689999999999775 34678999999999999999999999887654443344445666666653
No 100
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.05 E-value=7.1e-05 Score=65.55 Aligned_cols=116 Identities=13% Similarity=0.067 Sum_probs=68.9
Q ss_pred CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhcc---CChHHHHHHHh-cCcccccCcchHHHHHHHHHHccChhhhhhh
Q 032655 20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLG---RHYRRPFHLLN-SSKIVLRDLRFRYLAAKCLEELRSGTSVCRC 94 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~---g~~~~A~~~l~-~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~ 94 (136)
++.+.|+...+|++.++| +.+...-||..-... ..|..++.++. .+...+.+|.....+|.=++..|+|+-+.+-
T Consensus 213 ~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~l 292 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHL 292 (1018)
T ss_pred cchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHH
Confidence 555555555556555555 444333333332222 22445555442 2344556666666666666667777666542
Q ss_pred h--hhhhc-ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 95 S--VMLRL-LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 95 ~--~~~~~-~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
. .+... .-+..|.-||.+|++|.++|++++|..+|.+|++.
T Consensus 293 a~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 293 AEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA 336 (1018)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence 2 11111 22456667899999999999999999999998864
No 101
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.04 E-value=1.3e-05 Score=65.49 Aligned_cols=67 Identities=6% Similarity=-0.231 Sum_probs=51.2
Q ss_pred ccCcchHHHHHHHHHHccChhhhhhhhhhhh--cccchHh-HHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 69 LRDLRFRYLAAKCLEELRSGTSVCRCSVMLR--LLKMISS-AICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 69 ~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~--~~~~~~a-~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.++..++.+|..|+++|+|++|++.....+ ++.+..+ ..++++|.+|..+|+.++|+++|++|+++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4566788899999999999999987655433 3322222 56889999999999999999999998874
No 102
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=5e-05 Score=52.78 Aligned_cols=83 Identities=13% Similarity=0.013 Sum_probs=69.9
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCCChH----HHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccC
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTNDPA----DVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~~~~----~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~ 87 (136)
+...+.+.|+++.|+-..+++....|++. ..+.+|.+++..|+|++|+..|+...-....+....+.|.++...|+
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCC
Confidence 44667788999999999999999887543 57779999999999999999997754444566789999999999999
Q ss_pred hhhhhhh
Q 032655 88 GTSVCRC 94 (136)
Q Consensus 88 ~~ea~~~ 94 (136)
+++|...
T Consensus 134 ~~~A~~~ 140 (145)
T PF09976_consen 134 YDEARAA 140 (145)
T ss_pred HHHHHHH
Confidence 9999754
No 103
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.04 E-value=0.00014 Score=63.31 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=100.0
Q ss_pred HHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHH-HHhcCcccccCcchHHHHHHHHHHccChhhhhhh
Q 032655 17 VSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFH-LLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRC 94 (136)
Q Consensus 17 l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~-~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~ 94 (136)
-..|++++|+-.+.-+.-..| ++..++.+|.||-..|+...|+. -+..+-+.+++.+.+...+.--.++|.+++|.-+
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 334999999999999999999 89999999999999999999977 3344445688889999999999999999999876
Q ss_pred hhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 95 SVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 95 ~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
....+.-.|..-...+-+..+|+++|...+|.+.|.+.+.+
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~ 270 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL 270 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh
Confidence 65544444455566678899999999999999999998864
No 104
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.03 E-value=8.7e-05 Score=65.14 Aligned_cols=124 Identities=10% Similarity=-0.097 Sum_probs=93.1
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccCh
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~ 88 (136)
.++.-+...|+.+.|+.+++|++.-.| +......+|..+...|+|.+|+.++++.. ..+.++..++.++..+.+.+++
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 566777788999999999999992222 33344445789999999999999997753 3667788888888999999999
Q ss_pred hhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 89 TSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 89 ~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++|++.........|. ......++.++..+++..+|++.|+++++.
T Consensus 153 ~eAl~~l~~l~~~dp~-~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 153 GVVLKQATELAERDPT-VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHhcccCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9998876543322222 222245577777788888899999999864
No 105
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.03 E-value=4.6e-05 Score=52.05 Aligned_cols=96 Identities=17% Similarity=0.023 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcCc---c-cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccc---hHhHHHHH
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSSK---I-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKM---ISSAICFL 111 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~---l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~---~~a~i~~l 111 (136)
|+-.|..|.++-..|++.+|+.+.++.. + ......+..-+|.++..+|++++|+..........| ....+...
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 4567899999999999999999887642 2 123346888899999999999999876543332222 36666777
Q ss_pred HHHHHHHcCChHHHHHHHHHhhc
Q 032655 112 RGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 112 ~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.+.++..+|+.++|+.++-.+|.
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88999999999999999988764
No 106
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.01 E-value=7.7e-05 Score=52.90 Aligned_cols=88 Identities=11% Similarity=-0.121 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCCCh----HHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDP----ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAK 80 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~----~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~ 80 (136)
..-.-.+...+..+++|+.|+.+.++++.+.|++ ..++.+|.++...|++++|+..+++. .+.+.+....+.+|.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3344556677788899999999999999998743 35888999999999999999988664 335566677777777
Q ss_pred HHH-------HccChhhhhh
Q 032655 81 CLE-------ELRSGTSVCR 93 (136)
Q Consensus 81 c~~-------~l~~~~ea~~ 93 (136)
++. ++|++++|..
T Consensus 115 i~~~~~~~~~~~g~~~~A~~ 134 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEA 134 (168)
T ss_pred HHHHhhHHHHHcccHHHHHH
Confidence 777 7788887754
No 107
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.99 E-value=0.00041 Score=52.66 Aligned_cols=126 Identities=8% Similarity=-0.087 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChH---HHHHHHHHHhccCChHHHHHHHhcC----cccccCcchHHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPA---DVYMQAQALFLGRHYRRPFHLLNSS----KIVLRDLRFRYLAAK 80 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~---~~~~la~~l~~~g~~~~A~~~l~~~----~l~~~~~~~~~l~a~ 80 (136)
+-......+..++|+.|+-..+++....| ++. ..+++|.+++..|+|..|+..+++. .-++..+.+.|+.|.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 44455667788999999999999999999 433 4699999999999999999877653 324455678999999
Q ss_pred HHHHccC-----h-------------hhhhhhhhhh----------------hccc-chHhHHHHHHHHHHHHcCChHHH
Q 032655 81 CLEELRS-----G-------------TSVCRCSVML----------------RLLK-MISSAICFLRGKAYEALGNCAQA 125 (136)
Q Consensus 81 c~~~l~~-----~-------------~ea~~~~~~~----------------~~~~-~~~a~i~~l~G~~~~~~~~~~~A 125 (136)
|...+++ + .+|.+..... +..+ ...+.--+..|+-|.+.|++.-|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA 194 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAV 194 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 9877752 1 1222211100 0011 12333345678888888888888
Q ss_pred HHHHHHhhc
Q 032655 126 RLWLVSCDE 134 (136)
Q Consensus 126 ~~~y~~AL~ 134 (136)
+.-++..++
T Consensus 195 ~~r~~~v~~ 203 (243)
T PRK10866 195 VNRVEQMLR 203 (243)
T ss_pred HHHHHHHHH
Confidence 888777664
No 108
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.99 E-value=4.3e-05 Score=56.25 Aligned_cols=96 Identities=8% Similarity=-0.047 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcCcc----cccCcchHHHHHHHHHHccChhhhhhhhhhhhc---ccchHhHHHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSSKI----VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL---LKMISSAICF 110 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l----~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~---~~~~~a~i~~ 110 (136)
+++.+|..|..++..|+|.+|+..++.... .+..+.+.+.+|.++++.|+|++|.......+. ..|....+.|
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 567899999999999999999998876432 334557899999999999999999876654433 3345666788
Q ss_pred HHHHHHHHcC-----------ChHHHHHHHHHhh
Q 032655 111 LRGKAYEALG-----------NCAQARLWLVSCD 133 (136)
Q Consensus 111 l~G~~~~~~~-----------~~~~A~~~y~~AL 133 (136)
++|.++..+. +..+|+..|+.-+
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li 117 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI 117 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHH
Confidence 9999875543 3347777777655
No 109
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.95 E-value=1.5e-05 Score=41.81 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 106 SAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.+++.+|.+|..+|++++|+++|++||++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 357889999999999999999999999975
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=6.1e-05 Score=62.76 Aligned_cols=119 Identities=8% Similarity=-0.070 Sum_probs=96.8
Q ss_pred HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhhh
Q 032655 16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
.+++|...+|+-+.|.++..+| +.+.|-+||.+...+++=..|+..|++ .++++.+....-.+|.|+...|.=.+|+.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4678999999999999999999 889999999999999999999998866 46789999999999999999999988853
Q ss_pred hhh--------------------------------------hhhc---ccc--hHhHHHHHHHHHHHHcCChHHHHHHHH
Q 032655 94 CSV--------------------------------------MLRL---LKM--ISSAICFLRGKAYEALGNCAQARLWLV 130 (136)
Q Consensus 94 ~~~--------------------------------------~~~~---~~~--~~a~i~~l~G~~~~~~~~~~~A~~~y~ 130 (136)
... ..++ ..| ..+.+..-+|.+|--.|.+++|+.||+
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 110 0011 122 566677778888888888888888888
Q ss_pred Hhhc
Q 032655 131 SCDE 134 (136)
Q Consensus 131 ~AL~ 134 (136)
.||.
T Consensus 455 ~AL~ 458 (579)
T KOG1125|consen 455 AALQ 458 (579)
T ss_pred HHHh
Confidence 8875
No 111
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=7.8e-05 Score=61.53 Aligned_cols=122 Identities=10% Similarity=-0.041 Sum_probs=96.3
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhh
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
+-.+-.++|+.|+-=++|+.++.| +.-....++..+|+.+++..+.+.++.... .|.++++..++|..+...++|++|
T Consensus 402 Qm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 402 QMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHH
Confidence 334556899999999999999999 666788899999999999999998866543 678999999999999999999999
Q ss_pred hhhhh----------------------------hh--hc----------ccchHhHHHH-HHHHHHHHcCChHHHHHHHH
Q 032655 92 CRCSV----------------------------ML--RL----------LKMISSAICF-LRGKAYEALGNCAQARLWLV 130 (136)
Q Consensus 92 ~~~~~----------------------------~~--~~----------~~~~~a~i~~-l~G~~~~~~~~~~~A~~~y~ 130 (136)
++-.+ |. ++ .+++.+...+ -+|++-..+|+.++|++.|.
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 63110 00 00 2334444444 78999999999999999999
Q ss_pred Hhhcc
Q 032655 131 SCDEF 135 (136)
Q Consensus 131 ~AL~~ 135 (136)
+++.+
T Consensus 562 ksa~l 566 (606)
T KOG0547|consen 562 KSAQL 566 (606)
T ss_pred HHHHH
Confidence 98643
No 112
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.00018 Score=60.36 Aligned_cols=123 Identities=15% Similarity=0.029 Sum_probs=90.6
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCCChHHH--HHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHcc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTNDPADV--YMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~--~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~ 86 (136)
+|+-|=--|...+|++|+.+-++-.+.. ...+ |..|.|.|+.|..++|+..++. ++........|.|+.++++|
T Consensus 49 ~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk~Dealk~~~~--~~~~~~~ll~L~AQvlYrl~ 124 (652)
T KOG2376|consen 49 IRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNKLDEALKTLKG--LDRLDDKLLELRAQVLYRLE 124 (652)
T ss_pred HhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHcccHHHHHHHHhc--ccccchHHHHHHHHHHHHHh
Confidence 4555555566899999995555433322 2223 5899999999999999999984 34556678999999999999
Q ss_pred Chhhhhhhhh-------------h-----------hh------cccch-HhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 87 SGTSVCRCSV-------------M-----------LR------LLKMI-SSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 87 ~~~ea~~~~~-------------~-----------~~------~~~~~-~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+|+||.+... . .. ...|. .=..+|+...++-..|++.+|++-+.+|+++
T Consensus 125 ~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 125 RYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRI 204 (652)
T ss_pred hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999975320 0 00 02232 3346789999999999999999999999654
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=2.2e-05 Score=65.36 Aligned_cols=98 Identities=12% Similarity=0.017 Sum_probs=82.4
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY 116 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~ 116 (136)
+|+--.-||..|+.+|+|+||+.+++.+.. .|.+...++=+|-.+..-.+..||++.....+.--|.--.+.|++|..|
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~ 508 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISC 508 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhh
Confidence 555566689999999999999999988754 6688899999999999999999999877655543344455669999999
Q ss_pred HHcCChHHHHHHHHHhhcc
Q 032655 117 EALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 117 ~~~~~~~~A~~~y~~AL~~ 135 (136)
..+|-+++|+.+|-.||.+
T Consensus 509 mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 509 MNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred hhhhhHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 114
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.86 E-value=0.00022 Score=54.76 Aligned_cols=87 Identities=11% Similarity=0.062 Sum_probs=71.1
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCC----ChHHHHHHHHHHhccCChHHHHHHH----hcCcccccCcchHHHHHHH
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTN----DPADVYMQAQALFLGRHYRRPFHLL----NSSKIVLRDLRFRYLAAKC 81 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~----~~~~~~~la~~l~~~g~~~~A~~~l----~~~~l~~~~~~~~~l~a~c 81 (136)
-..--+.+-.++|.+|.--+-.-+.-.| .|+..||||+|+|..|+|.+|...+ +.+.-.++.|+..+-+|.|
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 3334445556889999999999998888 4789999999999999999997754 4444456788999999999
Q ss_pred HHHccChhhhhhhhh
Q 032655 82 LEELRSGTSVCRCSV 96 (136)
Q Consensus 82 ~~~l~~~~ea~~~~~ 96 (136)
..++|+.++|.....
T Consensus 225 ~~~l~~~d~A~atl~ 239 (262)
T COG1729 225 LGRLGNTDEACATLQ 239 (262)
T ss_pred HHHhcCHHHHHHHHH
Confidence 999999999976544
No 115
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.85 E-value=0.00017 Score=63.33 Aligned_cols=127 Identities=14% Similarity=-0.044 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccC----ChHHHHHHHhcCcc-cccCcchHHHHHHH
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGR----HYRRPFHLLNSSKI-VLRDLRFRYLAAKC 81 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g----~~~~A~~~l~~~~l-~~~~~~~~~l~a~c 81 (136)
.+.++.+.+|..+.++.|.|.+|+++...| +++++..+|..|...+ +-++|..++.+... .+.+...+..+|+.
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356788999999999999999999999999 8999999999988886 56788888866532 45777888889988
Q ss_pred HHHccChhhhhhhhhhhhc-----ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 82 LEELRSGTSVCRCSVMLRL-----LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 82 ~~~l~~~~ea~~~~~~~~~-----~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+....-|.. ++......+ +.++..-+...+|..+-.+|++++|.+.|++|+..
T Consensus 424 ~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 424 LEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 887777766 554332211 22345566778999999999999999999999864
No 116
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00029 Score=57.35 Aligned_cols=129 Identities=15% Similarity=0.065 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHH-HHHhcc-CChHHHHHHHhcC-cccccCcchHHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQA-QALFLG-RHYRRPFHLLNSS-KIVLRDLRFRYLAAKC 81 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la-~~l~~~-g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c 81 (136)
++-.+++|+.|+..+.+++|+..|.-..-..| +..++-++| .+++-. .--++|-+++++. .+.|.........|.-
T Consensus 368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL 447 (564)
T KOG1174|consen 368 LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHH
Confidence 45678999999999999999999999998888 888888886 444443 3346777777664 3456677888999999
Q ss_pred HHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 82 LEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 82 ~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|..-|++++++.-.+..+-..+ .-..+-.+|.++.+++-+++|.+.|..||++
T Consensus 448 ~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 448 CQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999875555443222 3345567899999999999999999999975
No 117
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.00021 Score=57.33 Aligned_cols=80 Identities=15% Similarity=0.037 Sum_probs=63.4
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCCChH--HHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChh
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTNDPA--DVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~~~~--~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
.++.+.+.+|+-|+-+-|-...+....+ --.|+|.|+|..|+|++|+...+...- +....+....+|-|.|-+|.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 5678889999999999998886665333 367899999999999999886654322 2344566778999999999999
Q ss_pred hhh
Q 032655 90 SVC 92 (136)
Q Consensus 90 ea~ 92 (136)
||.
T Consensus 109 eA~ 111 (557)
T KOG3785|consen 109 EAK 111 (557)
T ss_pred HHH
Confidence 985
No 118
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=4.3e-05 Score=61.43 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=61.4
Q ss_pred HHHHHHHHhccCChHHHHHHHhcCcc----------------cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchH
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSSKI----------------VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMIS 105 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~~l----------------~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~ 105 (136)
.-.-|+.||..|+|..|..-.++... ...-..|...+|.|+.++++|.+|+..-...+..-|..
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 34456777777777766665443110 00123578888888888888888876544333211223
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 106 SAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.-..|-+|+++..+|.++.|...|++|+++
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 334588888888888888888888888864
No 119
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.83 E-value=0.0003 Score=61.28 Aligned_cols=122 Identities=11% Similarity=0.076 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHH
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAA 79 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a 79 (136)
++..+-+-.+.+-.++.|.|.+|+-+...+....+ +..-|+.+|.||...|.|++|+...++. .+.|.|.+.+..++
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La 490 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLA 490 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence 34556667777888888888888888888887776 3335777888888888888888877664 33677888888888
Q ss_pred HHHHHccChhhhhhhhhhh---------hcccchHhHHHHHHHHHHHHcCChHH
Q 032655 80 KCLEELRSGTSVCRCSVML---------RLLKMISSAICFLRGKAYEALGNCAQ 124 (136)
Q Consensus 80 ~c~~~l~~~~ea~~~~~~~---------~~~~~~~a~i~~l~G~~~~~~~~~~~ 124 (136)
-.+.++|++++|++..... .+..+...-|.+.+-.++...|++++
T Consensus 491 sl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 8888888888887754421 11234566677777888888888877
No 120
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.81 E-value=3.6e-05 Score=40.21 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 106 SAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.+++.+|.+|..+|++++|.++|++|+++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357899999999999999999999999874
No 121
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.81 E-value=0.00032 Score=49.20 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=39.2
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcCc----ccccCcchHHHHHHHHHHccChhhhhhhhhhhh--c-ccchHhHHHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSSK----IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR--L-LKMISSAICF 110 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~----l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~--~-~~~~~a~i~~ 110 (136)
++.++|.-|+-.+..|+|.+|++.++... ..+-.....+-+|-++++.|+|++|.......+ . ..|...-++|
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 34455555555555555555555443321 111233445555555555555555554433221 1 1233344455
Q ss_pred HHHHHHHHcCC
Q 032655 111 LRGKAYEALGN 121 (136)
Q Consensus 111 l~G~~~~~~~~ 121 (136)
++|.++-.++.
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 55555555544
No 122
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.00079 Score=51.61 Aligned_cols=125 Identities=11% Similarity=-0.063 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccC
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~ 87 (136)
.+++.-.++.++...|-+.-..+...+| ++.-.-+.|.-+=-+|+|+.|++++++.-- +|.+...+-=.--..-.+|+
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK 135 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC
Confidence 3344445555555556555555555555 444555555555555666666665554322 23333332222233334455
Q ss_pred hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
--+|+.+...+++..+.....|.-+..+|-..|.+++|+-||++.+-
T Consensus 136 ~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 136 NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 55555444444444455666777777788888888888888777653
No 123
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=9.7e-05 Score=61.16 Aligned_cols=92 Identities=15% Similarity=0.054 Sum_probs=75.6
Q ss_pred HHHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCCh
Q 032655 44 MQAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNC 122 (136)
Q Consensus 44 ~la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~ 122 (136)
-.|...+-.|+|..|+.+. +...+++.+.--+-...-|+..+|+|++|+.......+..|.-+-.+.-+|-.+..+|++
T Consensus 7 ~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 7 EKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 4577888899999998866 555666654444567788999999999999877776666777888888999999999999
Q ss_pred HHHHHHHHHhhcc
Q 032655 123 AQARLWLVSCDEF 135 (136)
Q Consensus 123 ~~A~~~y~~AL~~ 135 (136)
++|+..|++.|+.
T Consensus 87 ~eA~~ay~~GL~~ 99 (539)
T KOG0548|consen 87 EEAILAYSEGLEK 99 (539)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999875
No 124
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.00022 Score=57.86 Aligned_cols=116 Identities=12% Similarity=-0.026 Sum_probs=87.6
Q ss_pred CChhhHHHHHHHHhccCCCh-------------HHHHHHHHHHhccCChHHHHHHHh-cCccccc----CcchHHHHHHH
Q 032655 20 HLYSSAIFFANEVAALTNDP-------------ADVYMQAQALFLGRHYRRPFHLLN-SSKIVLR----DLRFRYLAAKC 81 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~~~-------------~~~~~la~~l~~~g~~~~A~~~l~-~~~l~~~----~~~~~~l~a~c 81 (136)
.+.+.|+....+.+.+.|+. +.+=.-|.=.|.+|.|..|.+..+ ...++|. +..|++..|..
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 56788999999999999842 235556888999999999999774 4455553 44688999999
Q ss_pred HHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 82 LEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 82 ~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...+|+.+||+..-...+.-.+.-.-.++.+|.|+..++..++|++.|++|.+.
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999986433322111122223567799999999999999999999865
No 125
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.73 E-value=6.1e-05 Score=39.14 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 106 SAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.+++.+|.+|..+|++++|+++|++|+++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999999975
No 126
>PF04049 APC8: Anaphase promoting complex subunit 8 / Cdc23 ; InterPro: IPR007192 The anaphase-promoting complex is composed of eight protein subunits, including BimE (APC1), CDC27 (APC3), CDC16 (APC6), and CDC23 (APC8). This entry is for CDC23.; GO: 0030071 regulation of mitotic metaphase/anaphase transition, 0005680 anaphase-promoting complex
Probab=97.70 E-value=0.00035 Score=49.06 Aligned_cols=84 Identities=25% Similarity=0.350 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-------------------------------ChHHHHHHHHHHhc
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-------------------------------DPADVYMQAQALFL 51 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-------------------------------~~~~~~~la~~l~~ 51 (136)
.++-..||..|+.|-+.|.+.+|-+.||.+..+.| ...+.|.+|..||.
T Consensus 7 ~~ir~~L~~a~~~~s~RgL~~saKWaaElL~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~yllAksyFD 86 (142)
T PF04049_consen 7 KEIRSELRQAIRECSERGLYQSAKWAAELLNGLPPPWRDDTPDDPSSSPSSSQLSPSSPSEDQLESKEYDKYLLAKSYFD 86 (142)
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHcCCCCcccccccccccCCCccccCCCChhhhhhhhhHHHHHHHHHHHhc
Confidence 46778899999999999999999999999998871 01279999999999
Q ss_pred cCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhh
Q 032655 52 GRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTS 90 (136)
Q Consensus 52 ~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~e 90 (136)
.++|+||.++|++.. ++.+.||.-=+.+-.|+-+.
T Consensus 87 ~kEy~RaA~~L~~~~----s~~~~FL~lYs~YLa~EKr~ 121 (142)
T PF04049_consen 87 CKEYDRAAHVLKDCK----SPKALFLRLYSRYLAGEKRK 121 (142)
T ss_pred hhHHHHHHHHHccCC----CchHHHHHHHHHHHHHHHHH
Confidence 999999999998853 55555655555555444443
No 127
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.69 E-value=0.0013 Score=52.66 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEE 84 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~ 84 (136)
.+||+.+..+...|++.+|+-+-++++.++| +..-.-.-|.||..-|++..|++=++.. ++...+.+..|-.+.-++.
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence 3677777778888999999999999999999 7777777899999999999999977553 4555677777888888888
Q ss_pred ccChhhhh
Q 032655 85 LRSGTSVC 92 (136)
Q Consensus 85 l~~~~ea~ 92 (136)
.|+.++++
T Consensus 236 vgd~~~sL 243 (504)
T KOG0624|consen 236 VGDAENSL 243 (504)
T ss_pred hhhHHHHH
Confidence 88777753
No 128
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.69 E-value=6.4e-05 Score=40.28 Aligned_cols=27 Identities=15% Similarity=0.162 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+..+|.+|..+|++++|+++|+++|.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 568899999999999999999998854
No 129
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.68 E-value=0.00081 Score=57.47 Aligned_cols=117 Identities=12% Similarity=-0.083 Sum_probs=69.5
Q ss_pred HcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhh----
Q 032655 18 SKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSV---- 91 (136)
Q Consensus 18 ~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea---- 91 (136)
.+|..++=.-+..|+++.+| .+.-|..++.-....|+.-.|..+|.. +...+.+.+.++.+-+..++..+++.|
T Consensus 562 ~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred hcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHH
Confidence 34555555555556666666 333455555555566665555555533 222344555555555555555555554
Q ss_pred -----------------------------hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 92 -----------------------------CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 92 -----------------------------~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
..-.+.-+...|.---+++.+|++++.+++.+.|.+.|..-++
T Consensus 642 akar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 642 AKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 2211111113456666788999999999999999999987655
No 130
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.68 E-value=0.00011 Score=44.75 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=40.6
Q ss_pred HHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhh
Q 032655 46 AQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR 99 (136)
Q Consensus 46 a~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~ 99 (136)
...+...++|..|+.+++.. .+.|.++..++..|.|++++|+|++|.......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 56778888888888888654 3467788888888888888888888877655443
No 131
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.00062 Score=52.89 Aligned_cols=122 Identities=9% Similarity=-0.113 Sum_probs=87.3
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhh-
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTS- 90 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~e- 90 (136)
.+..+.+..+.-+--.+.-+..+| +.+.|..||..|..+|++..|...+.+ ..+.+.++.....+|..++-...-..
T Consensus 130 a~~~~~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~t 209 (287)
T COG4235 130 AQPPAEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMT 209 (287)
T ss_pred ccCCCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCccc
Confidence 333444556666667777788888 889999999999999999999987755 46678899999989988876653322
Q ss_pred --hhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 91 --VCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 91 --a~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.+-....+..-|..-...+++|..+...|++.+|+..+++-|+.
T Consensus 210 a~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 210 AKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 111111111122334445588899999999999999999887764
No 132
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.59 E-value=0.00031 Score=52.43 Aligned_cols=92 Identities=16% Similarity=0.017 Sum_probs=65.5
Q ss_pred HHHHHHhccCChHHHHHHHhcC-cccc-----cCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655 44 MQAQALFLGRHYRRPFHLLNSS-KIVL-----RDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE 117 (136)
Q Consensus 44 ~la~~l~~~g~~~~A~~~l~~~-~l~~-----~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~ 117 (136)
-=|.=+|.+|.|..|..-...+ .+.+ ...-|+...|-|..++++++.|++.-.+.+.-.|.---...-++.+|+
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 3467799999998887644332 2222 123467789999999999999987655444323322223346699999
Q ss_pred HcCChHHHHHHHHHhhcc
Q 032655 118 ALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 118 ~~~~~~~A~~~y~~AL~~ 135 (136)
+++.+++|++-|++.|+.
T Consensus 180 k~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 999999999999998864
No 133
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.58 E-value=0.0013 Score=56.47 Aligned_cols=123 Identities=9% Similarity=-0.065 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccC--CChHHHHHHHHHHhccCChHHHHHHHhcCc---ccccCcchHHHHHHHHHH
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALT--NDPADVYMQAQALFLGRHYRRPFHLLNSSK---IVLRDLRFRYLAAKCLEE 84 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~--~~~~~~~~la~~l~~~g~~~~A~~~l~~~~---l~~~~~~~~~l~a~c~~~ 84 (136)
-.+|.-+..+|++++|+-+.++..... |+......+..++...|..++|.++++... ....+...+......+.+
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r 474 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHh
Confidence 345555555666666666666655432 333334444445555555555555553321 011222334445555555
Q ss_pred ccChhhhh--------------------------------hhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 85 LRSGTSVC--------------------------------RCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 85 l~~~~ea~--------------------------------~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
.|+++||. .....-+...|.....+.+++.+|.+.|+.++|.+.+++.
T Consensus 475 ~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 475 EGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred cCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence 55555553 2221111112333445667888999999999999988764
No 134
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.58 E-value=0.00063 Score=51.62 Aligned_cols=83 Identities=11% Similarity=0.047 Sum_probs=64.3
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCc---chHHHHHHHHHHccChhhhhhhhhhhhc---ccchHhHHHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDL---RFRYLAAKCLEELRSGTSVCRCSVMLRL---LKMISSAICF 110 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~---~~~~l~a~c~~~l~~~~ea~~~~~~~~~---~~~~~a~i~~ 110 (136)
+++..|..|.-++..|+|.+|+..++...- .+.++ ...+.+|.+++++|+|++|+......+. +.|....+.|
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 567799999999999999999998877532 23333 3348899999999999999987654332 4466777889
Q ss_pred HHHHHHHHcC
Q 032655 111 LRGKAYEALG 120 (136)
Q Consensus 111 l~G~~~~~~~ 120 (136)
++|.++..++
T Consensus 111 ~~g~~~~~~~ 120 (243)
T PRK10866 111 MRGLTNMALD 120 (243)
T ss_pred HHHHhhhhcc
Confidence 9999976665
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.58 E-value=0.00037 Score=56.54 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=70.3
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChh
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
+++-++..++-.+|+-+..+++..+| +.+-+...|..+...|+|+.|+.+.+++ .+.|....+++.+|+||.++|+|+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 45556677888999999999999998 7778888999999999999999988665 446788899999999999999999
Q ss_pred hhh
Q 032655 90 SVC 92 (136)
Q Consensus 90 ea~ 92 (136)
+|+
T Consensus 286 ~AL 288 (395)
T PF09295_consen 286 NAL 288 (395)
T ss_pred HHH
Confidence 996
No 136
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.54 E-value=0.0008 Score=47.23 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC----ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCc---chHHHH
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN----DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDL---RFRYLA 78 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~----~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~---~~~~l~ 78 (136)
+.+-.--+..+..++|++|+...+.+.+-.| .+..-..+|-++|.+|+|..|+..+++. .++|.|+ -+.|..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 3455667788999999999999999999998 4667899999999999999999988775 4455555 578999
Q ss_pred HHHHHHccC
Q 032655 79 AKCLEELRS 87 (136)
Q Consensus 79 a~c~~~l~~ 87 (136)
|.+.+++..
T Consensus 91 gL~~~~~~~ 99 (142)
T PF13512_consen 91 GLSYYEQDE 99 (142)
T ss_pred HHHHHHHhh
Confidence 999999876
No 137
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0015 Score=53.41 Aligned_cols=132 Identities=13% Similarity=0.024 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHH
Q 032655 4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKC 81 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c 81 (136)
.+.-+.....+-|.-.|.+..+.|..-...+..| |..-+--+|.|+|.+|++.+|+..+++.. +++-....-=++|--
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L 275 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL 275 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH
Confidence 3444555666677777888889888888888888 55567778999999999999988776643 344445555556666
Q ss_pred HHHccChhhh----------------------------------hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHH
Q 032655 82 LEELRSGTSV----------------------------------CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARL 127 (136)
Q Consensus 82 ~~~l~~~~ea----------------------------------~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~ 127 (136)
+-.-|.+++- +.-.++.++-.|..-..+.++|.+...+|+.++|+-
T Consensus 276 L~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~I 355 (564)
T KOG1174|consen 276 LGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVI 355 (564)
T ss_pred HHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHH
Confidence 6666666653 111111122223344567899999999999999999
Q ss_pred HHHHhhcc
Q 032655 128 WLVSCDEF 135 (136)
Q Consensus 128 ~y~~AL~~ 135 (136)
.|+.|..+
T Consensus 356 aFR~Aq~L 363 (564)
T KOG1174|consen 356 AFRTAQML 363 (564)
T ss_pred HHHHHHhc
Confidence 99998654
No 138
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.48 E-value=0.00017 Score=61.02 Aligned_cols=119 Identities=8% Similarity=-0.013 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHc
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l 85 (136)
.+|..+. |-+..||...+-+++.++.-+| .++++-..|..+...|+-++|+.+.+... .+.++.-|++.+|......
T Consensus 10 lF~~~lk-~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALK-CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHH-HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 3455444 5566899999999999999888 78899999999999999999999886643 3668888999999999999
Q ss_pred cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHH
Q 032655 86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARL 127 (136)
Q Consensus 86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~ 127 (136)
++|+||+.+..-.+.--|....|+.=+..+--.++.++-..+
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 999999876543332223455555544555555555554443
No 139
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.48 E-value=0.0025 Score=48.22 Aligned_cols=78 Identities=5% Similarity=-0.190 Sum_probs=50.4
Q ss_pred HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccc---cCcchHHHHHHHHHHccChhhh
Q 032655 16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVL---RDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~---~~~~~~~l~a~c~~~l~~~~ea 91 (136)
+-..|..+.|---.++++++.| +-+-.-.+|.=+...|+|++|+..++.+..++ .....+-.+|.|-.+.|+++.|
T Consensus 79 Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A 158 (250)
T COG3063 79 YQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQA 158 (250)
T ss_pred HHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhH
Confidence 3445666777777777777777 33344556777777777777777666554433 3456666777777777777776
Q ss_pred hh
Q 032655 92 CR 93 (136)
Q Consensus 92 ~~ 93 (136)
.+
T Consensus 159 ~~ 160 (250)
T COG3063 159 EE 160 (250)
T ss_pred HH
Confidence 43
No 140
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.47 E-value=0.0032 Score=56.93 Aligned_cols=84 Identities=12% Similarity=0.005 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhcc----CCChHHHHHHHHHHhccCChHHHHHHHhcCcc--cccCcchHHHHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAAL----TNDPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLRDLRFRYLAAKCL 82 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~----~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~~~~~~~l~a~c~ 82 (136)
...+|.-+...++++.|..+.+.+... .|+...+..+..+|.+.|++++|.++++...- ...++..+..+..+|
T Consensus 545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay 624 (1060)
T PLN03218 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 444555555555555555555555432 23333344445555555555555555543211 122334445555555
Q ss_pred HHccChhhhh
Q 032655 83 EELRSGTSVC 92 (136)
Q Consensus 83 ~~l~~~~ea~ 92 (136)
.+.|++++|.
T Consensus 625 ~k~G~~deAl 634 (1060)
T PLN03218 625 SQKGDWDFAL 634 (1060)
T ss_pred HhcCCHHHHH
Confidence 5555555553
No 141
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.45 E-value=0.0005 Score=60.79 Aligned_cols=120 Identities=10% Similarity=-0.081 Sum_probs=92.7
Q ss_pred HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhh
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
.+++.++...|+-|+.-++-.+| +.+.|.-+|.+|-..|.|..|++...++.+ .|.+.-.+|-.|...-.+|+|++++
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 35677999999999999999999 888999999999999999999999977654 7788889999999999999999999
Q ss_pred hhhhhhh---c-c--cchHhHHHH-HHHHHHHHcCChHHHHHHHHHhhc
Q 032655 93 RCSVMLR---L-L--KMISSAICF-LRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 93 ~~~~~~~---~-~--~~~~a~i~~-l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+..++.. . . .-.+.+-++ ...+.+-..|-..+|+.+++++++
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 8765321 0 1 112222233 336666666666777777766654
No 142
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.45 E-value=0.00012 Score=38.93 Aligned_cols=31 Identities=10% Similarity=0.086 Sum_probs=28.1
Q ss_pred HHHHhccCC-ChHHHHHHHHHHhccCChHHHH
Q 032655 29 ANEVAALTN-DPADVYMQAQALFLGRHYRRPF 59 (136)
Q Consensus 29 aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~ 59 (136)
.+|++.++| +++.++.+|.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 578899999 8999999999999999999885
No 143
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.45 E-value=0.00074 Score=59.71 Aligned_cols=102 Identities=8% Similarity=-0.116 Sum_probs=80.7
Q ss_pred ccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhh---------h----h
Q 032655 34 ALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSV---------M----L 98 (136)
Q Consensus 34 ~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~---------~----~ 98 (136)
..+| +.+.+..++..+...|++++|+.+++.+. ..+..+.++|..|..++..+++.++.--.. + +
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEH 104 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHH
Confidence 3345 77889999999999999999999997543 367899999999999999999999742110 0 0
Q ss_pred ----hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 99 ----RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 99 ----~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+-..+....+++-+|.||+++|++++|...|.++|++
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~ 145 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA 145 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 0122334457789999999999999999999999986
No 144
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.0066 Score=44.86 Aligned_cols=119 Identities=13% Similarity=0.032 Sum_probs=86.3
Q ss_pred HHHHcCChhhHHHHHHHHhccCC-C---hHHHHHHHHHHhccCChHHHHHHHhcCccccc----CcchHHHHHHHHHHcc
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN-D---PADVYMQAQALFLGRHYRRPFHLLNSSKIVLR----DLRFRYLAAKCLEELR 86 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~-~---~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~----~~~~~~l~a~c~~~l~ 86 (136)
..+....+ +..-.+++....+| + .-....+|...+-.|+++.|..-|+...-.++ -+-...-+|+..+++|
T Consensus 62 ~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~ 140 (207)
T COG2976 62 KAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQK 140 (207)
T ss_pred HHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhh
Confidence 34444444 66677788777776 2 22466789999999999999998875432122 2235567899999999
Q ss_pred ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++++|+....-..+ ....+.+.-++|.++-..|+.++|...|++||..
T Consensus 141 k~D~AL~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 141 KADAALKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 99999876552221 1234555669999999999999999999999864
No 145
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.37 E-value=0.0051 Score=55.60 Aligned_cols=84 Identities=13% Similarity=-0.010 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccC--CChHHHHHHHHHHhccCChHHHHHHHhcCcc----cccCcchHHHHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALT--NDPADVYMQAQALFLGRHYRRPFHLLNSSKI----VLRDLRFRYLAAKCL 82 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~--~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l----~~~~~~~~~l~a~c~ 82 (136)
.-.+|.-+...++++.|+-+.++..... |+...+..+...+...|++++|..+++.... ...+...+..+-.+|
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 3444555555566666665555554332 4444555555555566666666555543210 112233444455555
Q ss_pred HHccChhhhh
Q 032655 83 EELRSGTSVC 92 (136)
Q Consensus 83 ~~l~~~~ea~ 92 (136)
.+.|++++|.
T Consensus 590 ~k~G~ldeA~ 599 (1060)
T PLN03218 590 ANAGQVDRAK 599 (1060)
T ss_pred HHCCCHHHHH
Confidence 5666666553
No 146
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.37 E-value=0.014 Score=44.61 Aligned_cols=82 Identities=12% Similarity=0.014 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC----ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCc---chHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN----DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDL---RFRYL 77 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~----~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~---~~~~l 77 (136)
.+.|-.-....++.|+|++|+-..+++....| .+.....++.++|++|+|..|+..++.+- +.+.|+ -..|+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 45677788899999999999999999999998 45689999999999999999999887753 344444 46899
Q ss_pred HHHHHHHccC
Q 032655 78 AAKCLEELRS 87 (136)
Q Consensus 78 ~a~c~~~l~~ 87 (136)
.|.+.+..=+
T Consensus 114 kgLs~~~~i~ 123 (254)
T COG4105 114 KGLSYFFQID 123 (254)
T ss_pred HHHHHhccCC
Confidence 9999765433
No 147
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.00076 Score=53.14 Aligned_cols=125 Identities=10% Similarity=-0.011 Sum_probs=96.6
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccCh
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~ 88 (136)
+.|..-|.-+.|.+|+-.-.--..-+| +...+.++|.|||...+|..|..+.+.. .+.++-...++-.|+++++.+.+
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 345555667899999988777777778 7778999999999999999999988664 33566777889999999999999
Q ss_pred hhhhhh---------h---------hh-h-----------hcccc--hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 89 TSVCRC---------S---------VM-L-----------RLLKM--ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 89 ~ea~~~---------~---------~~-~-----------~~~~~--~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+|+.. . .+ + +++.| ..+......|.+.-+-|+++.|++-|..|+.+
T Consensus 95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 998521 0 00 0 11223 45666677899999999999999999999864
No 148
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.34 E-value=0.0023 Score=55.01 Aligned_cols=82 Identities=9% Similarity=-0.096 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc--cccCcchHHHHHHHHHHccC
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~~~~~~~l~a~c~~~l~~ 87 (136)
-.+|.-+...|++++|.-..++.- .|+...+..+...|..+|++++|+.+++...- ...+...+.....+|.++|+
T Consensus 263 n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 263 CALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 356778888899999988888763 23666788888999999999999998865321 23445567778888899999
Q ss_pred hhhhhh
Q 032655 88 GTSVCR 93 (136)
Q Consensus 88 ~~ea~~ 93 (136)
+++|.+
T Consensus 341 ~~~a~~ 346 (697)
T PLN03081 341 LEHAKQ 346 (697)
T ss_pred hHHHHH
Confidence 998854
No 149
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.34 E-value=0.0032 Score=48.51 Aligned_cols=131 Identities=12% Similarity=-0.029 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC---ChH----HHHHHHHHHhccCChHHHHHHHhcCcc-------c
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN---DPA----DVYMQAQALFLGRHYRRPFHLLNSSKI-------V 68 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~---~~~----~~~~la~~l~~~g~~~~A~~~l~~~~l-------~ 68 (136)
++..+-+...-..+-..++|+.|.....++....- ++. .....|.|+.. +++.+|+.+++++.- .
T Consensus 32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~ 110 (282)
T PF14938_consen 32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRF 110 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcH
Confidence 45566666777777788999999999988876652 222 23444555544 488888887765321 1
Q ss_pred ccCcchHHHHHHHHHHc-cChhhhhhhhhh----h-hcccchHhHHHH-HHHHHHHHcCChHHHHHHHHHhhc
Q 032655 69 LRDLRFRYLAAKCLEEL-RSGTSVCRCSVM----L-RLLKMISSAICF-LRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 69 ~~~~~~~~l~a~c~~~l-~~~~ea~~~~~~----~-~~~~~~~a~i~~-l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
..-..+...+|..+.+. |++++|++.... . .++.+..+.-++ ..|.++-.+|++++|++.|.+..+
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 23345667777777777 888888764432 1 123344445455 559999999999999999998754
No 150
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.34 E-value=0.0049 Score=48.03 Aligned_cols=126 Identities=12% Similarity=-0.102 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHH--HHHHhccC--ChHHHHHHHhcCcc-cccCcchHHHHHHH
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQ--AQALFLGR--HYRRPFHLLNSSKI-VLRDLRFRYLAAKC 81 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~l--a~~l~~~g--~~~~A~~~l~~~~l-~~~~~~~~~l~a~c 81 (136)
+-+--.|+-++..++++-|.--.++.-..+++ .-+..+ |++-+..| +++.|+.+++...- .+.++...+..|.|
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 34445678888888888887777666554432 334444 33444445 58888887765322 23566777888889
Q ss_pred HHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 82 LEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 82 ~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
+..+|+|+||.+.....+...|.......++..+...+|+..+++.-|..-|
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 9999999998765443333334445566678888888888866666555433
No 151
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.33 E-value=0.0016 Score=44.98 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~ 65 (136)
+..++-++.++..++..+.++.|+.++++++..+| +...+..+..+|...|++..|+...++.
T Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 44566778888889999999999999999999999 6667888999999999999999887663
No 152
>PLN03077 Protein ECB2; Provisional
Probab=97.32 E-value=0.0066 Score=53.33 Aligned_cols=123 Identities=13% Similarity=-0.002 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccC--CChHHHHHHHHHHhccCChHHHHHHHhcCc---ccccCcchHHHHHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALT--NDPADVYMQAQALFLGRHYRRPFHLLNSSK---IVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~--~~~~~~~~la~~l~~~g~~~~A~~~l~~~~---l~~~~~~~~~l~a~c~~ 83 (136)
.-.+|.-+..+|+.+.|+-+.++..... |+......+-.++...|.+++|.++++... ....+...+......+.
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 4456667777777777777777766533 444444444456667777777777665432 12234455666777777
Q ss_pred HccChhhhhhhh--------------------------------hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655 84 ELRSGTSVCRCS--------------------------------VMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVS 131 (136)
Q Consensus 84 ~l~~~~ea~~~~--------------------------------~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~ 131 (136)
+.|+++||.+-. ..-+.-.|..++.+.+++.+|...|+.++|.+..+.
T Consensus 637 r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 637 RAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred hCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 777777774311 000112245566677889999999999999887764
No 153
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.30 E-value=0.0062 Score=49.11 Aligned_cols=124 Identities=10% Similarity=-0.096 Sum_probs=90.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~ 87 (136)
.-+.+.+.++.|.+++|.-+-+..+--.-+++ +..+.-++ .-|+++.=++.+++. ..++.+|.....+|+-|++-|.
T Consensus 266 ~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l-~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~ 343 (400)
T COG3071 266 VVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRL-RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL 343 (400)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhc-CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence 44677888888999999998888887776666 44443333 334555545544332 2245677889999999999999
Q ss_pred hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|.+|.+.....++.- .++.-+..+|.++.++|..++|.+++.++|..
T Consensus 344 w~kA~~~leaAl~~~-~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 344 WGKASEALEAALKLR-PSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHHhcC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999987665444322 25555678899999999999999999999854
No 154
>PLN03077 Protein ECB2; Provisional
Probab=97.24 E-value=0.006 Score=53.61 Aligned_cols=118 Identities=10% Similarity=-0.142 Sum_probs=85.4
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc--cccCcchHHHHHHHHHHccCh
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~~~~~~~l~a~c~~~l~~~ 88 (136)
.+|.-+...|+.++|....+.. .|+...|-.+...|...|+.++|+.++++-.- ...+...+...-.+|.+.|..
T Consensus 529 aLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 529 ALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 5678888899999999988886 66888899999999999999999999975321 223444445555678899999
Q ss_pred hhhhhhhhhh--hcccchHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655 89 TSVCRCSVML--RLLKMISSAICFLRGKAYEALGNCAQARLWLVS 131 (136)
Q Consensus 89 ~ea~~~~~~~--~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~ 131 (136)
++|.+....- ..++.+....+..+..+|.+.|+.++|.+.+++
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9997644321 113333444555667777777777777777765
No 155
>PRK11906 transcriptional regulator; Provisional
Probab=97.21 E-value=0.0048 Score=50.80 Aligned_cols=113 Identities=9% Similarity=0.016 Sum_probs=70.0
Q ss_pred hhHHHHHHHHh---ccCC-ChHHHHHHHHHHhcc------C---ChHHHHHHHhc-CcccccCcchHHHHHHHHHHccCh
Q 032655 23 SSAIFFANEVA---ALTN-DPADVYMQAQALFLG------R---HYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 23 ~~Alf~aekl~---~~~~-~~~~~~~la~~l~~~------g---~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~ 88 (136)
+.|+-.+++++ +++| .....-.+|.|++.. . .-..|..+.++ -.+++.++.+..+.|....-.+++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA 354 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence 35666777777 5555 344566666666544 1 11223333322 234567777777777777777777
Q ss_pred hhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 89 TSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 89 ~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.|....+....-+|..+.+++..|.+.---|+.++|.++..+||++
T Consensus 355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 77665544444445667777777777777777777777777777654
No 156
>PRK11906 transcriptional regulator; Provisional
Probab=97.16 E-value=0.0058 Score=50.33 Aligned_cols=89 Identities=11% Similarity=-0.030 Sum_probs=73.0
Q ss_pred CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655 20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSVM 97 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~ 97 (136)
..-..|+-.|+|+++++| +|-..+.+|..+...|++..|...++++. +.+.....+|..|..++-.|+.++|.+....
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 345679999999999999 89999999999999999999999997765 4778899999999999999999999875443
Q ss_pred --hhcccchHhHH
Q 032655 98 --LRLLKMISSAI 108 (136)
Q Consensus 98 --~~~~~~~~a~i 108 (136)
.+++....++|
T Consensus 398 alrLsP~~~~~~~ 410 (458)
T PRK11906 398 SLQLEPRRRKAVV 410 (458)
T ss_pred HhccCchhhHHHH
Confidence 23333444443
No 157
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.019 Score=47.68 Aligned_cols=118 Identities=12% Similarity=0.035 Sum_probs=78.7
Q ss_pred HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhh
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
.+-.+++.+.|+-++=|+.++-- +.+-++.+|..|-...++.+|++++-. .++.+.+|...--+|.-|-+-|+-.+|-
T Consensus 533 t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 34456777778877777776664 667777778888888888888776633 3446677777777777776666666653
Q ss_pred hh----------------------------------hhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 93 RC----------------------------------SVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 93 ~~----------------------------------~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
.. .+..--.-|..+---+++..|+++.||+++|.+.|+..
T Consensus 613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 21 11100011333333346699999999999999999864
No 158
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.15 E-value=0.0035 Score=53.32 Aligned_cols=97 Identities=9% Similarity=0.087 Sum_probs=79.7
Q ss_pred CCChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhh--hhhhhcccchHhHHHH-H
Q 032655 36 TNDPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRC--SVMLRLLKMISSAICF-L 111 (136)
Q Consensus 36 ~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~--~~~~~~~~~~~a~i~~-l 111 (136)
.|...+.|.-+.=.|-.+||+..+++++...- .+.|.+..-+.|.-+..+|+-+||.+. .+...| ..|.+|. .
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d---~~S~vCwHv 80 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND---LKSHVCWHV 80 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC---cccchhHHH
Confidence 34455788888889999999998887765422 468999999999999999999999873 333333 6788866 8
Q ss_pred HHHHHHHcCChHHHHHHHHHhhcc
Q 032655 112 RGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 112 ~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.|.+++....+.+|+.||+.||++
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhc
Confidence 899999999999999999999975
No 159
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.13 E-value=0.0013 Score=56.48 Aligned_cols=95 Identities=13% Similarity=-0.030 Sum_probs=76.4
Q ss_pred HHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG 120 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~ 120 (136)
-..+|...+.+++|.++...++.+ .+.+-.++.+|-+|-|..++++++.|.+..-..+..-|.....+.++...|-+++
T Consensus 488 ~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~ 567 (777)
T KOG1128|consen 488 QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLK 567 (777)
T ss_pred HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHh
Confidence 355566677788999998888553 4566778899999999999999999988766555555677888889999999999
Q ss_pred ChHHHHHHHHHhhccC
Q 032655 121 NCAQARLWLVSCDEFT 136 (136)
Q Consensus 121 ~~~~A~~~y~~AL~~~ 136 (136)
...+|-.++++||+.+
T Consensus 568 ~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 568 KKKRAFRKLKEALKCN 583 (777)
T ss_pred hhHHHHHHHHHHhhcC
Confidence 9999999999998853
No 160
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.12 E-value=0.0014 Score=50.43 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=57.5
Q ss_pred HHHHHHhccCChHHHHHHHhcCc-cc-----c-cCcchHHHHHHHHHHccChhhhhhhhhh----hhc-ccchHhHH-HH
Q 032655 44 MQAQALFLGRHYRRPFHLLNSSK-IV-----L-RDLRFRYLAAKCLEELRSGTSVCRCSVM----LRL-LKMISSAI-CF 110 (136)
Q Consensus 44 ~la~~l~~~g~~~~A~~~l~~~~-l~-----~-~~~~~~~l~a~c~~~l~~~~ea~~~~~~----~~~-~~~~~a~i-~~ 110 (136)
..|.+|...|+|.+|.+...+.. .. + ....++...|.|+.+. ++++|++.... ... +.+..++. +.
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 35788888899998888665532 11 1 1223445566666555 88888764432 222 44444444 44
Q ss_pred HHHHHHHHc-CChHHHHHHHHHhhcc
Q 032655 111 LRGKAYEAL-GNCAQARLWLVSCDEF 135 (136)
Q Consensus 111 l~G~~~~~~-~~~~~A~~~y~~AL~~ 135 (136)
.+|.+|+.. |++++|+++|++|+++
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 779999999 9999999999999864
No 161
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.11 E-value=0.0011 Score=54.44 Aligned_cols=53 Identities=13% Similarity=0.141 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhcC-cccccCcc---hHHHHHHHHHHccChhhhh
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLR---FRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~---~~~l~a~c~~~l~~~~ea~ 92 (136)
+.++.+|..|+..|+|++|+..+++. .+.+.+.. .+|.+|.|+..+|++++|+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAl 132 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAA 132 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34555555555555555555555442 22333332 2555555555555555554
No 162
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.11 E-value=0.0043 Score=43.53 Aligned_cols=93 Identities=15% Similarity=0.027 Sum_probs=74.7
Q ss_pred HHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhhhhhhhhhc--cc--chHhHHHHHHHHHH
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL--LK--MISSAICFLRGKAY 116 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~--~~--~~~a~i~~l~G~~~ 116 (136)
+=+.|..+.-.|+.+.|++.+.+ ..+.+..+..++..|+.+.-.|+-++|+|.....++ +- ...-..+..+|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 55678889999999999998855 455778999999999999999999999987655332 22 23344566899999
Q ss_pred HHcCChHHHHHHHHHhhc
Q 032655 117 EALGNCAQARLWLVSCDE 134 (136)
Q Consensus 117 ~~~~~~~~A~~~y~~AL~ 134 (136)
+.+||-+.|..-|..|-.
T Consensus 126 Rl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HHhCchHHHHHhHHHHHH
Confidence 999999999999987743
No 163
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.11 E-value=0.022 Score=46.06 Aligned_cols=128 Identities=11% Similarity=-0.013 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc---Ccccc--------------
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS---SKIVL-------------- 69 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~---~~l~~-------------- 69 (136)
..-...+.-+..++++.|.---+.++.+.| +|+-+-+..++|...|.|...+.++.+ .++..
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 344556777889999999999999999999 788888889999999999999887754 22111
Q ss_pred --------------------------cCcchHHHHHHHHHHccChhhhhhh----h--------h---------------
Q 032655 70 --------------------------RDLRFRYLAAKCLEELRSGTSVCRC----S--------V--------------- 96 (136)
Q Consensus 70 --------------------------~~~~~~~l~a~c~~~l~~~~ea~~~----~--------~--------------- 96 (136)
.+|...--++.=+..+|.+++|.+. . .
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~ 314 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLI 314 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHH
Confidence 1466666777778888888888421 0 0
Q ss_pred hh----hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 97 ML----RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 97 ~~----~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.. ....|....+++-+|.+|.+.+...+|..+|+.||+.
T Consensus 315 k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 315 KAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 00 1133556677888999999999999999999999874
No 164
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.10 E-value=0.0019 Score=51.82 Aligned_cols=92 Identities=13% Similarity=0.070 Sum_probs=71.0
Q ss_pred HHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhhh-hh-hhhhcccchHhHHHHHHHHHHHH
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVCR-CS-VMLRLLKMISSAICFLRGKAYEA 118 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~~-~~-~~~~~~~~~~a~i~~l~G~~~~~ 118 (136)
+--.|.-||..|+|++|+.+..+ ..+.+.++-..-..|.+|+++++|..|+. +. ...+|.. ---.+--+|.+-..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--YVKAYSRRMQARES 177 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--HHHHHHHHHHHHHH
Confidence 44578899999999999998744 45566788888899999999999998864 22 2333311 11234577999999
Q ss_pred cCChHHHHHHHHHhhcc
Q 032655 119 LGNCAQARLWLVSCDEF 135 (136)
Q Consensus 119 ~~~~~~A~~~y~~AL~~ 135 (136)
+|+.++|.+-|..+|++
T Consensus 178 Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLAL 194 (536)
T ss_pred HhhHHHHHHhHHHHHhh
Confidence 99999999999999875
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.04 E-value=0.017 Score=42.85 Aligned_cols=112 Identities=14% Similarity=0.031 Sum_probs=49.7
Q ss_pred HHcCChhhHHHHHHHHhc-cCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc---ccccCcchHHHHHHHHHHccChhhh
Q 032655 17 VSKHLYSSAIFFANEVAA-LTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK---IVLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 17 l~~~~~~~Alf~aekl~~-~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~---l~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
.+.|.+.+|.-..+..++ ++. ++.-+.-+|+..+-.+++..|...|++.. -..+++.-..++|+.+-.+|++.+|
T Consensus 100 ~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A 179 (251)
T COG4700 100 AELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADA 179 (251)
T ss_pred HHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence 344555555544444332 121 33334445555555555555555444321 1124444455555555555555555
Q ss_pred hhhhhhhhcccc-hHhHHHHHHHHHHHHcCChHHHHHHHH
Q 032655 92 CRCSVMLRLLKM-ISSAICFLRGKAYEALGNCAQARLWLV 130 (136)
Q Consensus 92 ~~~~~~~~~~~~-~~a~i~~l~G~~~~~~~~~~~A~~~y~ 130 (136)
+...+...+-.| ..+. ..-|...-++|+..+|..-|.
T Consensus 180 esafe~a~~~ypg~~ar--~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 180 ESAFEVAISYYPGPQAR--IYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHHhCCCHHHH--HHHHHHHHHhcchhHHHHHHH
Confidence 544444333222 1222 222444455555555544443
No 166
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.03 E-value=0.0098 Score=42.55 Aligned_cols=86 Identities=14% Similarity=0.054 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHH
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAK 80 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~ 80 (136)
++++.-|..++.-.+..+..+++.-.-+.+-.+.| .++--..-|+.+...|+|..|+.+++...- .+..+.|.-|+|.
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 67788899999999999999999999999999999 777788889999999999999999988543 3467788999999
Q ss_pred HHHHccCh
Q 032655 81 CLEELRSG 88 (136)
Q Consensus 81 c~~~l~~~ 88 (136)
|++.+|+.
T Consensus 87 CL~~~~D~ 94 (160)
T PF09613_consen 87 CLYALGDP 94 (160)
T ss_pred HHHHcCCh
Confidence 99999986
No 167
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.01 E-value=0.0051 Score=47.90 Aligned_cols=89 Identities=16% Similarity=0.086 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~ 83 (136)
.+-.-+||.-......+.+|.++.+.+...+| +|.-..-+|.|+...|+|.+|..+++.. ..++.++......+-|..
T Consensus 167 ~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 167 TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 33445677777777789999999999888776 7778888999999999999999988664 446788999999999999
Q ss_pred HccChhhhhhh
Q 032655 84 ELRSGTSVCRC 94 (136)
Q Consensus 84 ~l~~~~ea~~~ 94 (136)
-+|+..++.++
T Consensus 247 ~~gk~~~~~~~ 257 (290)
T PF04733_consen 247 HLGKPTEAAER 257 (290)
T ss_dssp HTT-TCHHHHH
T ss_pred HhCCChhHHHH
Confidence 99999776543
No 168
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.017 Score=45.87 Aligned_cols=90 Identities=8% Similarity=-0.017 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cc-cCcchHHHHHH
Q 032655 4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VL-RDLRFRYLAAK 80 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~-~~~~~~~l~a~ 80 (136)
++-+-.=++.+.++-..+.+.|++|..|++..+| +...-..+|.+....|+|..|++.+++..- ++ --+...-.+..
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 3444455677888888999999999999999999 788889999999999999999998877531 11 23356778889
Q ss_pred HHHHccChhhhhh
Q 032655 81 CLEELRSGTSVCR 93 (136)
Q Consensus 81 c~~~l~~~~ea~~ 93 (136)
||-++|+.++++.
T Consensus 258 ~Y~~lg~~~~~~~ 270 (389)
T COG2956 258 CYAQLGKPAEGLN 270 (389)
T ss_pred HHHHhCCHHHHHH
Confidence 9999999999865
No 169
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.97 E-value=0.011 Score=51.93 Aligned_cols=119 Identities=8% Similarity=-0.120 Sum_probs=76.5
Q ss_pred HHHcCChhhHHHHHHHHhccCC--Ch----HHHHHHHHHHhccCChHHHHHHHhcCcc-------cccCcchHHHHHHHH
Q 032655 16 CVSKHLYSSAIFFANEVAALTN--DP----ADVYMQAQALFLGRHYRRPFHLLNSSKI-------VLRDLRFRYLAAKCL 82 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~~--~~----~~~~~la~~l~~~g~~~~A~~~l~~~~l-------~~~~~~~~~l~a~c~ 82 (136)
+...++++.|.-++++++...| ++ .....+|.++...|++.+|...+....- ......+....|..+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 4567899999999999887655 21 1346678888899999988887755321 001123556678888
Q ss_pred HHccChhhhhhhhhhhhc--------ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 83 EELRSGTSVCRCSVMLRL--------LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 83 ~~l~~~~ea~~~~~~~~~--------~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
...|++++|.......++ ..+..+.+...+|.++...|+.++|...+.+++.
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~ 601 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLE 601 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHH
Confidence 999999998653221110 1122233344667777777777777777777664
No 170
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.95 E-value=0.0039 Score=38.26 Aligned_cols=52 Identities=10% Similarity=-0.026 Sum_probs=26.0
Q ss_pred HHHHHHHHhccCChHHHHHHHhcCc-c-------cccCcchHHHHHHHHHHccChhhhhh
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSSK-I-------VLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~~-l-------~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
...+|.+|+..|+|++|+..+++.. + .+....+.+.+|.|+..+|++++|++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 67 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE 67 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455666666666666655554321 0 00123455556666666666666554
No 171
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.003 Score=51.38 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 73 RFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 73 ~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...+|.+.|+..+|+|.+|.++..-.+-..+......+++|+++--.+|-+.|+..|.++|++
T Consensus 170 ~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l 232 (486)
T KOG0550|consen 170 KAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL 232 (486)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc
Confidence 445666777777777777665443222122345666789999999999999999999999975
No 172
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.90 E-value=0.014 Score=41.36 Aligned_cols=86 Identities=12% Similarity=0.004 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccc-cCcchHHHHHH
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVL-RDLRFRYLAAK 80 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~-~~~~~~~l~a~ 80 (136)
.+++.-|.+.++..+....++++.-.-+.+--+.| .++--..-|..+...|+|.+|+.++++-.-.. ..+.+.-|++.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 46677788889999999999999999999999999 67767777999999999999999998865433 44789999999
Q ss_pred HHHHccCh
Q 032655 81 CLEELRSG 88 (136)
Q Consensus 81 c~~~l~~~ 88 (136)
|++.+|+.
T Consensus 87 CL~al~Dp 94 (153)
T TIGR02561 87 CLNAKGDA 94 (153)
T ss_pred HHHhcCCh
Confidence 99999986
No 173
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.89 E-value=0.0051 Score=49.37 Aligned_cols=97 Identities=11% Similarity=-0.023 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY 116 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~ 116 (136)
+.+.-+-+|.-++..||+..|+..... ..+++.+....|-.|-.++.+|+-+-|+......+..-|...+.-..+|.++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 344567788888888888888886644 4557778888888888888888888887665554444456666677888888
Q ss_pred HHcCChHHHHHHHHHhhc
Q 032655 117 EALGNCAQARLWLVSCDE 134 (136)
Q Consensus 117 ~~~~~~~~A~~~y~~AL~ 134 (136)
.++|..+.|..-|...|.
T Consensus 117 lK~Gele~A~~DF~~vl~ 134 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQ 134 (504)
T ss_pred hhcccHHHHHHHHHHHHh
Confidence 888888888888887775
No 174
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.89 E-value=0.0017 Score=31.57 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 107 AICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 107 ~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..++.+|.++..+|+++.|+.+|++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35678999999999999999999999875
No 175
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0064 Score=47.31 Aligned_cols=84 Identities=18% Similarity=0.112 Sum_probs=70.4
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChH---HHHHHHhcC-cccccCcchHHHHHHHHHHccCh
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYR---RPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~---~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~ 88 (136)
+-++.++++.+|+-...+++-+.| +|+-+--+|.+++....-+ ++-.++++. .+++.+...++++|..+++.|+|
T Consensus 164 ~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~ 243 (287)
T COG4235 164 RAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDY 243 (287)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccH
Confidence 457889999999999999999999 8888999999887766533 556677664 45789999999999999999999
Q ss_pred hhhhhhhhh
Q 032655 89 TSVCRCSVM 97 (136)
Q Consensus 89 ~ea~~~~~~ 97 (136)
++|...-.+
T Consensus 244 ~~A~~~Wq~ 252 (287)
T COG4235 244 AEAAAAWQM 252 (287)
T ss_pred HHHHHHHHH
Confidence 999865443
No 176
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.045 Score=44.32 Aligned_cols=85 Identities=13% Similarity=0.050 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHH-HHcCChhhHHHHHHHHhccC-CChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHH
Q 032655 4 EEIEKLRGLVRDC-VSKHLYSSAIFFANEVAALT-NDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKC 81 (136)
Q Consensus 4 ~~~~~lr~~i~~~-l~~~~~~~Alf~aekl~~~~-~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c 81 (136)
+-.+.+..||-+| ...|+|+.|+-.-+-+-..+ |+.+-+..+|.|+|-.|+|.+|-.+-.+.. ++|.|.-|+-..
T Consensus 54 EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~---k~pL~~RLlfhl 130 (557)
T KOG3785|consen 54 EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAP---KTPLCIRLLFHL 130 (557)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCC---CChHHHHHHHHH
Confidence 3346889999887 46799999998888777644 367779999999999999999999887764 677777777777
Q ss_pred HHHccChhhh
Q 032655 82 LEELRSGTSV 91 (136)
Q Consensus 82 ~~~l~~~~ea 91 (136)
-.++++-++-
T Consensus 131 ahklndEk~~ 140 (557)
T KOG3785|consen 131 AHKLNDEKRI 140 (557)
T ss_pred HHHhCcHHHH
Confidence 7777776664
No 177
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.021 Score=43.93 Aligned_cols=115 Identities=13% Similarity=0.057 Sum_probs=80.6
Q ss_pred HcCChhhHHHHHHHHhccCCChHHHHH-HHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhh
Q 032655 18 SKHLYSSAIFFANEVAALTNDPADVYM-QAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCS 95 (136)
Q Consensus 18 ~~~~~~~Alf~aekl~~~~~~~~~~~~-la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~ 95 (136)
..++|++|+-+-|.+++.+|.....+- .--.+--.|+-..|+.-+.+. ...+.+.+.+.=++..|+..|+|++|.=+.
T Consensus 98 a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 98 ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 358999999999999999984443332 233455678878888766443 224578899999999999999999996544
Q ss_pred hhhhcccch-------HhHHHHHHHHHHHHcCChHHHHHHHHHhhccC
Q 032655 96 VMLRLLKMI-------SSAICFLRGKAYEALGNCAQARLWLVSCDEFT 136 (136)
Q Consensus 96 ~~~~~~~~~-------~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~~ 136 (136)
+.-+-..|. -+.+.|-.|- ..|.+-|.++|.+||+++
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGG----AENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhC
Confidence 322212222 3444444443 578899999999999874
No 178
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.70 E-value=0.0011 Score=54.11 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 105 SSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 105 ~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+...|+.+|..|-++|+.++|..+-...|+
T Consensus 314 e~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 444566666666666666666666665554
No 179
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=96.70 E-value=0.007 Score=52.36 Aligned_cols=114 Identities=9% Similarity=-0.089 Sum_probs=81.2
Q ss_pred CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-c-cccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655 20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-I-VLRDLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
-....+++.-|+++...| ||..+|+++.=|...++...|+..++.+. + ...++.++.++|.|.-..+++.+|++.-+
T Consensus 458 ~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 456788999999999999 99999999999999999999999886653 3 34789999999999999999999987544
Q ss_pred hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 97 MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 97 ~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
..+++.+..-..-..+-.+-...+++++|+.-...-|
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L 574 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKL 574 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHH
Confidence 3332111111111122223345666666666554443
No 180
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.68 E-value=0.029 Score=49.41 Aligned_cols=90 Identities=11% Similarity=-0.013 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCC-hHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-PADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCL 82 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~-~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~ 82 (136)
+.+|--.=|++.++.++++.|+--+++++.-+|+ +-...+.|.++++.|.+.+|+.+|+.... -..+....=.+-.|+
T Consensus 8 ~~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y 87 (932)
T KOG2053|consen 8 MSERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVY 87 (932)
T ss_pred cHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHH
Confidence 4566666799999999999999999999999995 55799999999999999999999977544 234566677888999
Q ss_pred HHccChhhhhhh
Q 032655 83 EELRSGTSVCRC 94 (136)
Q Consensus 83 ~~l~~~~ea~~~ 94 (136)
.++|+++++...
T Consensus 88 ~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 88 RDLGKLDEAVHL 99 (932)
T ss_pred HHHhhhhHHHHH
Confidence 999999999754
No 181
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.67 E-value=0.028 Score=46.58 Aligned_cols=113 Identities=9% Similarity=-0.032 Sum_probs=82.1
Q ss_pred ChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-----cccCcchHHHHHHHHHHccChhhhhhh
Q 032655 21 LYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-----VLRDLRFRYLAAKCLEELRSGTSVCRC 94 (136)
Q Consensus 21 ~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-----~~~~~~~~~l~a~c~~~l~~~~ea~~~ 94 (136)
..+.|.-.-+......| ++--.+..|..+...|+.++|+..+++.-. ...+.-|.+=+|-|+.-+.+|++|.+.
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 33445555555556667 455677789999999999999999985331 223557899999999999999999876
Q ss_pred hhhhhcccch-HhHHHHHHHHHHHHcCCh-------HHHHHHHHHhh
Q 032655 95 SVMLRLLKMI-SSAICFLRGKAYEALGNC-------AQARLWLVSCD 133 (136)
Q Consensus 95 ~~~~~~~~~~-~a~i~~l~G~~~~~~~~~-------~~A~~~y~~AL 133 (136)
...-.+.++- .+--.|+.|.|+..+|+. ++|.+.|+++=
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 5543333333 333345889999999999 88888888763
No 182
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.64 E-value=0.044 Score=44.30 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcCcc-----cccCcchHHHHHHHHHH---ccChhhhhhhhhhhh-cccchHhHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSSKI-----VLRDLRFRYLAAKCLEE---LRSGTSVCRCSVMLR-LLKMISSAI 108 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-----~~~~~~~~~l~a~c~~~---l~~~~ea~~~~~~~~-~~~~~~a~i 108 (136)
+++-+..+=.+|-...+|+.=+.+.+...- ...++...+++|.++.+ -|+.++|++.....+ ...+..+.+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 456688888889999999988887766432 22577789999999999 999999988765422 233457778
Q ss_pred HHHHHHHHHHc---------CChHHHHHHHHHhhcc
Q 032655 109 CFLRGKAYEAL---------GNCAQARLWLVSCDEF 135 (136)
Q Consensus 109 ~~l~G~~~~~~---------~~~~~A~~~y~~AL~~ 135 (136)
+.+.|.+|+.+ +..++|+++|+++.++
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 99999999653 3578999999998764
No 183
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0066 Score=46.36 Aligned_cols=93 Identities=12% Similarity=0.099 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCC-hHHHHHHHHHHhccCChHHHHH-HHhcCcccccCcchHHHHHHH
Q 032655 4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-PADVYMQAQALFLGRHYRRPFH-LLNSSKIVLRDLRFRYLAAKC 81 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~-~~~~~~la~~l~~~g~~~~A~~-~l~~~~l~~~~~~~~~l~a~c 81 (136)
++.+|+..--..|...-.|..|+-.--|++.++|. +.-+-.-|.|++...+|+.+.+ ..+...+++......|.+|.+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~ 87 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW 87 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence 34444444444444455555555555555555552 2334444555555555555544 333334444555555555666
Q ss_pred HHHccChhhhhhhhh
Q 032655 82 LEELRSGTSVCRCSV 96 (136)
Q Consensus 82 ~~~l~~~~ea~~~~~ 96 (136)
....+.|.+|+....
T Consensus 88 ~l~s~~~~eaI~~Lq 102 (284)
T KOG4642|consen 88 LLQSKGYDEAIKVLQ 102 (284)
T ss_pred HHhhccccHHHHHHH
Confidence 666555555554443
No 184
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.62 E-value=0.0068 Score=33.54 Aligned_cols=37 Identities=24% Similarity=0.107 Sum_probs=22.1
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHH
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQ 47 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~ 47 (136)
.+.+-+...|+++.|+-+.++++..+| +++.+..+|.
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 344555666666666666666666666 5555555553
No 185
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.61 E-value=0.13 Score=38.36 Aligned_cols=117 Identities=16% Similarity=0.018 Sum_probs=91.3
Q ss_pred cCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCc--ccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655 19 KHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSK--IVLRDLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~--l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
.-+++.++-=+.+-++..|...+-+-+|..+...|+|++|....+.+. +.-.++....-+|+..+.++++.+|....+
T Consensus 69 ~ldP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 69 KLDPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred hcChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 345777888888889999988999999999999999999999886643 233566777888999999999999976554
Q ss_pred hhhcccc--hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 97 MLRLLKM--ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 97 ~~~~~~~--~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.-..-+| -...-.++.|+.+-.+|+++.|...|+.|+..
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 3221111 12334578899999999999999999988753
No 186
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.57 E-value=0.026 Score=47.46 Aligned_cols=86 Identities=13% Similarity=0.018 Sum_probs=51.5
Q ss_pred HHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhh--hhcccchHhHHHHHHHHHHHH
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM--LRLLKMISSAICFLRGKAYEA 118 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~--~~~~~~~~a~i~~l~G~~~~~ 118 (136)
+|++|++|-..|++.+|+++++++ ...|..++.+++.|+++-..|++++|.+..+. .+|. ..--+.-.-.+-+.+
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~--~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL--ADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHH
Confidence 366677777777777777777543 33556677777777777777777777664432 2331 011111222555556
Q ss_pred cCChHHHHHHH
Q 032655 119 LGNCAQARLWL 129 (136)
Q Consensus 119 ~~~~~~A~~~y 129 (136)
-|+.++|.+-.
T Consensus 275 a~~~e~A~~~~ 285 (517)
T PF12569_consen 275 AGRIEEAEKTA 285 (517)
T ss_pred CCCHHHHHHHH
Confidence 67777776544
No 187
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.54 E-value=0.0023 Score=35.47 Aligned_cols=42 Identities=19% Similarity=0.004 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHH
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAK 80 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~ 80 (136)
|+.++.+|..|...|++++|..++++. ...+.++..+..+|+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567888999999999999999988665 336677777777665
No 188
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.50 E-value=0.14 Score=34.68 Aligned_cols=125 Identities=16% Similarity=-0.020 Sum_probs=66.0
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhc--cCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHH-HHHH
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAA--LTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAK-CLEE 84 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~--~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~-c~~~ 84 (136)
..........+.+..++...+.... ..+ .....+..+......+++..++..+.+... ...........+. ++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 3444555556666667666666665 334 444566667777777777777776655432 1222334444555 6777
Q ss_pred ccChhhhhhhhhhhhcccc---hHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 85 LRSGTSVCRCSVMLRLLKM---ISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 85 l~~~~ea~~~~~~~~~~~~---~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.|+++++.+.....+...+ ..+...+..+..+...++++.|+..+.++++
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 143 LGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred cCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 7777776543332111111 2233333444445555555555555555544
No 189
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.48 E-value=0.0076 Score=49.46 Aligned_cols=95 Identities=11% Similarity=0.072 Sum_probs=73.0
Q ss_pred HHHHHHHHHhccCChHHHHHHHhcCcccc-------cCcchHHHHHHHHHHccChhhhhhhhhh------hhcccchHhH
Q 032655 41 DVYMQAQALFLGRHYRRPFHLLNSSKIVL-------RDLRFRYLAAKCLEELRSGTSVCRCSVM------LRLLKMISSA 107 (136)
Q Consensus 41 ~~~~la~~l~~~g~~~~A~~~l~~~~l~~-------~~~~~~~l~a~c~~~l~~~~ea~~~~~~------~~~~~~~~a~ 107 (136)
..-.+|..||..|+|+.|++.=+....+. ..-.+.-.+|.|+.-+|+++.|.+.... ++.+..+++.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 46778999999999999998654322111 1224556789999999999999875432 2324467999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 108 ICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 108 i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.||.+|..|--+..+++|+.++.+=|+|
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaI 304 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAI 304 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987765
No 190
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.38 E-value=0.051 Score=47.71 Aligned_cols=120 Identities=13% Similarity=0.031 Sum_probs=84.9
Q ss_pred HHHHcCChhhHHHHHHHHhccCC---Ch----HHHHHHHHHHhccCChHHHHHHHhcCcc-cc-----c---CcchHHHH
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN---DP----ADVYMQAQALFLGRHYRRPFHLLNSSKI-VL-----R---DLRFRYLA 78 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~---~~----~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~-----~---~~~~~~l~ 78 (136)
.....|+++.|.-+.++++.... ++ .....+|.+++..|++.+|...++...- .. . ........
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 34568999999999999987753 21 2356679999999999999887755321 01 1 11234577
Q ss_pred HHHHHHccChhhhhhhhhhhhc-----ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 79 AKCLEELRSGTSVCRCSVMLRL-----LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 79 a~c~~~l~~~~ea~~~~~~~~~-----~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
|..+...|++++|......... +.......+..+|.++...|+.+.|...+.+++.
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8899999999999764332111 1122344455789999999999999999998865
No 191
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.36 E-value=0.0073 Score=32.24 Aligned_cols=30 Identities=23% Similarity=0.141 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 106 SAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+..+..+|.+|..+|++++|..++++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 345668999999999999999999999864
No 192
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.073 Score=43.18 Aligned_cols=85 Identities=9% Similarity=0.009 Sum_probs=67.5
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-----ChHH-----------HHHHHHHHhccCChHHHHHHHhcC-cccccCcchHH
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-----DPAD-----------VYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRY 76 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-----~~~~-----------~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~ 76 (136)
-.+...++|..|+---+|++..-+ +++. ...+|-|+...+.|..|+..+.+. ...+.|....|
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 356677999999999888775542 2221 456899999999999999988665 34778999999
Q ss_pred HHHHHHHHccChhhhhhhhhhh
Q 032655 77 LAAKCLEELRSGTSVCRCSVML 98 (136)
Q Consensus 77 l~a~c~~~l~~~~ea~~~~~~~ 98 (136)
=.|+|+..+++|+.|.+...+.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKA 317 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHH
Confidence 9999999999999998866543
No 193
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.12 E-value=0.0085 Score=32.64 Aligned_cols=30 Identities=20% Similarity=-0.039 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 106 SAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|.++.++|.+....+|++.|++-|++||++
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346778999999999999999999999975
No 194
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.09 E-value=0.0082 Score=30.74 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~ 65 (136)
|+.++.+|.+++..|+|.+|+..+++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 466888999999999999999888654
No 195
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.024 Score=43.35 Aligned_cols=97 Identities=12% Similarity=0.028 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE 117 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~ 117 (136)
.+-+=-.|.++|....|..|+..+.++ -+.+..+...-..|.|++++++|+.+...-...++-+|...-.+|-+|....
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 344556789999999999999977443 4455666777789999999999999876443333333445556789999999
Q ss_pred HcCChHHHHHHHHHhhcc
Q 032655 118 ALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 118 ~~~~~~~A~~~y~~AL~~ 135 (136)
.+.++.+|+.++++|..+
T Consensus 90 ~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred hhccccHHHHHHHHHHHH
Confidence 999999999999999653
No 196
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.00 E-value=0.076 Score=36.42 Aligned_cols=108 Identities=20% Similarity=0.027 Sum_probs=59.9
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCC-C-hHHHHHHHHHHhccCChHHH-HHHHhcCcccccCcchHHHHHHHHHHccChh
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTN-D-PADVYMQAQALFLGRHYRRP-FHLLNSSKIVLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~-~-~~~~~~la~~l~~~g~~~~A-~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
.......+..+.++-..++++.+.. + ..++.. ..|-.. ...+++ ....+.--++..+...|+++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~-----~~~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRE-----LYLDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHH-----HHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCHH
Confidence 3344667899999999999998873 1 001000 111111 111221 22345556666777777777
Q ss_pred hhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 90 SVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
+|+.....-+...|....++..+-++|..+|++.+|+..|.+.-
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 77765544443445566666777777777788877777777653
No 197
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.32 Score=38.15 Aligned_cols=113 Identities=9% Similarity=0.006 Sum_probs=57.4
Q ss_pred HcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhh-
Q 032655 18 SKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCS- 95 (136)
Q Consensus 18 ~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~- 95 (136)
..+++.+|.-..+-++...| +.+....+|.||...|+.+.|..+|......-......-+.++ +.-.++|.+..
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~----i~ll~qaa~~~~ 221 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQ----IELLEQAAATPE 221 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHH----HHHHHHHhcCCC
Confidence 34566666666666666665 5555666666666666666666666554321111111111110 01111111100
Q ss_pred ----hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 96 ----VMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 96 ----~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
....+..|..-.+-+-+++.+-..|+++.|.+.+-.-|+
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 001123344555667788888888888888877655543
No 198
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.019 Score=45.45 Aligned_cols=100 Identities=14% Similarity=0.006 Sum_probs=70.2
Q ss_pred HHhccCC---ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhh-hhh--------
Q 032655 31 EVAALTN---DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRC-SVM-------- 97 (136)
Q Consensus 31 kl~~~~~---~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~-~~~-------- 97 (136)
-++..-| +.+.....|..+|..|||+.|++-++.+. ...-.+...|..|.|++.-|+|..|++. +++
T Consensus 133 sLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~H 212 (459)
T KOG4340|consen 133 SLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQH 212 (459)
T ss_pred HHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcC
Confidence 3444445 23457778999999999999998775543 2346788899999999999999999752 111
Q ss_pred -h------h---c----ccc---hHhH---HHHHHHHHHHHcCChHHHHHHHH
Q 032655 98 -L------R---L----LKM---ISSA---ICFLRGKAYEALGNCAQARLWLV 130 (136)
Q Consensus 98 -~------~---~----~~~---~~a~---i~~l~G~~~~~~~~~~~A~~~y~ 130 (136)
+ . | +++ ..|+ .+.|+.-|+-..+|++.|.+...
T Consensus 213 PElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 213 PELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred CccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 0 0 1 221 1222 35588999999999999988764
No 199
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.97 E-value=0.01 Score=30.13 Aligned_cols=27 Identities=15% Similarity=0.224 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 108 ICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 108 i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+.+.+|.+|.++|+.++|+..|++.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 457889999999999999999998775
No 200
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.87 E-value=0.16 Score=35.06 Aligned_cols=64 Identities=19% Similarity=0.015 Sum_probs=43.3
Q ss_pred CcchHHHHHHHHHHccChhhhhhhhhh---hhc---c-c----chHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 71 DLRFRYLAAKCLEELRSGTSVCRCSVM---LRL---L-K----MISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 71 ~~~~~~l~a~c~~~l~~~~ea~~~~~~---~~~---~-~----~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+..|.--++.++..+|+|+|++...+. +++ + . +.=-++-+.+|..++.+|+.++|...|++|-+
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 345777788889999999998754322 221 1 1 11122346899999999999999999999854
No 201
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.86 E-value=0.061 Score=41.21 Aligned_cols=81 Identities=7% Similarity=0.001 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcCc----ccccCcchHHHHHHHHHHccChhhhhhhhhhhh---cccchHhHHHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSSK----IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR---LLKMISSAICF 110 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~----l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~---~~~~~~a~i~~ 110 (136)
+++-+|.-|+.-.+.|+|.+|...+++.. ..+-........+.++++.++|++|+...+..+ ...|...-+.|
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 35569999999999999999999876633 233345788999999999999999987665443 24567778889
Q ss_pred HHHHHHHH
Q 032655 111 LRGKAYEA 118 (136)
Q Consensus 111 l~G~~~~~ 118 (136)
++|.++-.
T Consensus 113 lkgLs~~~ 120 (254)
T COG4105 113 LKGLSYFF 120 (254)
T ss_pred HHHHHHhc
Confidence 99999643
No 202
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.049 Score=42.02 Aligned_cols=94 Identities=17% Similarity=0.046 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCChHHHHHHHhc-------Ccc------------cccCcchHHHHHHHHHHccChhhhhhhhhhhhccc
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNS-------SKI------------VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLK 102 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~-------~~l------------~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~ 102 (136)
+..-|+-+|..|+|++|....+. ..+ +.....-...+.+|++..|+|-|+++.....+...
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 66679999999998887654433 211 11233457889999999999999988544333223
Q ss_pred chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 103 MISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 103 ~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|..--++|.+|+++-.-=|..+|..-|+++|++
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 344456789999999999999999999999875
No 203
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.75 E-value=0.36 Score=32.58 Aligned_cols=116 Identities=16% Similarity=0.000 Sum_probs=87.0
Q ss_pred cCChhhHHHHHHHHhccCCC---hHHHHHHHHHHhccCChHHHHHHHhcCc---ccccCcchHHHHHHHHHHccChhhhh
Q 032655 19 KHLYSSAIFFANEVAALTND---PADVYMQAQALFLGRHYRRPFHLLNSSK---IVLRDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~~---~~~~~~la~~l~~~g~~~~A~~~l~~~~---l~~~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
.+.+..+.......+...+. .......+..+...|.+..+........ .........+..+......+++.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 46777788888888877774 5788999999999999999988776543 33456677888999999999999988
Q ss_pred hhhhhhhcccchHhHHHHHHHH-HHHHcCChHHHHHHHHHhhc
Q 032655 93 RCSVMLRLLKMISSAICFLRGK-AYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 93 ~~~~~~~~~~~~~a~i~~l~G~-~~~~~~~~~~A~~~y~~AL~ 134 (136)
+.........+.........+. ++...|+++.|..+|.+++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7655433211111233344555 99999999999999999865
No 204
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.71 E-value=0.059 Score=40.24 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=27.7
Q ss_pred hHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 104 ISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 104 ~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
....+.||+|.++.++|++++|+.||.+.+.
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 3677889999999999999999999998764
No 205
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.63 E-value=0.073 Score=46.11 Aligned_cols=119 Identities=14% Similarity=-0.015 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChh
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
|.+..-.+..|...+|+-.+||+... --...||...|+.+.|-.++....-.+..+.-+.++|...-+..-|+
T Consensus 402 ~~laell~slGitksAl~I~Erlemw-------~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEMW-------DPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHHH-------HHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 34556667789999999999987654 44577999999988887766442213466667778888877777777
Q ss_pred hhhhhh----------------------------hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 90 SVCRCS----------------------------VMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 90 ea~~~~----------------------------~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.|.+.+ ...+..+|..-..+|-+|.+..++++.+.|+.+|..++.+
T Consensus 475 kawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 475 KAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred HHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 774311 0011234677788999999999999999999999998754
No 206
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.35 E-value=0.33 Score=42.15 Aligned_cols=122 Identities=9% Similarity=-0.091 Sum_probs=83.4
Q ss_pred HHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHh-ccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhh
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALF-LGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~-~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
+.|.....++-|.-...+++..+|...++++-+.-+- .-|.-+.-..+|+++-. .++.+..+.+++......|+.-+|
T Consensus 524 ~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 524 QSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHH
Confidence 4567778889999999999999997776665554333 33444444456666533 567788899999999999999887
Q ss_pred hhhhhh------------------h-----hc----------ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 92 CRCSVM------------------L-----RL----------LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 92 ~~~~~~------------------~-----~~----------~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...... + ++ .......+++--...-.-+||.++|.....+||+.
T Consensus 604 r~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 604 RVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 432100 0 00 11223445555567778899999999999999975
No 207
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.14 E-value=0.14 Score=32.93 Aligned_cols=57 Identities=5% Similarity=-0.226 Sum_probs=41.1
Q ss_pred HHHHHHccChhhhhhhhhhhhc----cc--c---hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 79 AKCLEELRSGTSVCRCSVMLRL----LK--M---ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 79 a~c~~~l~~~~ea~~~~~~~~~----~~--~---~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
-.-....|+|.+|.+.....+| .. + .-....+.+|.++...|++++|+..+++|+++
T Consensus 5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445678899998876554333 11 1 23344567899999999999999999999875
No 208
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.07 E-value=0.036 Score=40.51 Aligned_cols=69 Identities=13% Similarity=0.056 Sum_probs=44.7
Q ss_pred CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHH---HHHHHhc--------CcccccCcchHHHHHHHHHHccC
Q 032655 20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRR---PFHLLNS--------SKIVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~---A~~~l~~--------~~l~~~~~~~~~l~a~c~~~l~~ 87 (136)
-.|+.|.--++..+..+| ++++++.-|.+|....|++. +..+++. ..++|.....++..|.++..++.
T Consensus 5 ~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 5 LFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 347788888999999999 88888888888877766643 4344432 12345555677777777777765
Q ss_pred h
Q 032655 88 G 88 (136)
Q Consensus 88 ~ 88 (136)
.
T Consensus 85 l 85 (186)
T PF06552_consen 85 L 85 (186)
T ss_dssp H
T ss_pred h
Confidence 3
No 209
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.99 E-value=0.064 Score=47.33 Aligned_cols=85 Identities=16% Similarity=0.117 Sum_probs=58.7
Q ss_pred hccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHH
Q 032655 50 FLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLW 128 (136)
Q Consensus 50 ~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~ 128 (136)
...+||+.|+..+.+-.- .++.+-++-+.|..++++|+++||....+..-..-+......--+--+|+.+|..++|+.+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 345888988876544211 3466778889999999999999998544321111111222233557899999999999999
Q ss_pred HHHhhc
Q 032655 129 LVSCDE 134 (136)
Q Consensus 129 y~~AL~ 134 (136)
|..++.
T Consensus 100 Ye~~~~ 105 (932)
T KOG2053|consen 100 YERANQ 105 (932)
T ss_pred HHHHHh
Confidence 999864
No 210
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.95 E-value=0.037 Score=28.39 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhcC
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~~ 65 (136)
+.++.+|.+++..|+|..|+..+++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 45677778888888888877777653
No 211
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.90 E-value=0.78 Score=38.53 Aligned_cols=91 Identities=20% Similarity=0.111 Sum_probs=48.5
Q ss_pred HHHHHhccCChHHHHHHHhcC-cc--cccCcchHHHHHHHHHHccChhhhhhhhhhhhc-ccchHhHHHHHHHHHH-HHc
Q 032655 45 QAQALFLGRHYRRPFHLLNSS-KI--VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL-LKMISSAICFLRGKAY-EAL 119 (136)
Q Consensus 45 la~~l~~~g~~~~A~~~l~~~-~l--~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~-~~~~~a~i~~l~G~~~-~~~ 119 (136)
+|.|.-..|+.++|++..+.. +. ...+...++++-.|+.+++.|.|+..-..++-| ..|..+++||-...+- ++-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 556666666666665544332 11 113445666666666666666665444433322 2367888888554432 212
Q ss_pred CC---------------hHHHHHHHHHhhcc
Q 032655 120 GN---------------CAQARLWLVSCDEF 135 (136)
Q Consensus 120 ~~---------------~~~A~~~y~~AL~~ 135 (136)
+. -..|++...+|.++
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvef 375 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEF 375 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHh
Confidence 21 13467777777654
No 212
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.86 E-value=0.11 Score=43.71 Aligned_cols=98 Identities=14% Similarity=0.002 Sum_probs=69.9
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHhcCccccc--------Ccc--hHHHHHHHHHHccChhhhhhh-------h--hh
Q 032655 37 NDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLR--------DLR--FRYLAAKCLEELRSGTSVCRC-------S--VM 97 (136)
Q Consensus 37 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~--------~~~--~~~l~a~c~~~l~~~~ea~~~-------~--~~ 97 (136)
+++...++.++-.|..|+|..|.++|-..++... ... +++.+|-.+++++.|.-+.-- . ..
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999999998866554211 112 345777788888888775321 1 11
Q ss_pred h--hccc-------chHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 98 L--RLLK-------MISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 98 ~--~~~~-------~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
. +.+. .-.-.|.|+.|..|...|+.-.|.+||.+|..
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 0 1111 11345788999999999999999999999875
No 213
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=94.69 E-value=0.093 Score=44.13 Aligned_cols=77 Identities=12% Similarity=-0.000 Sum_probs=59.1
Q ss_pred CChhhHHHHHHHHhcc--CC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655 20 HLYSSAIFFANEVAAL--TN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~--~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
.+...|.-.++++.++ .| +|....-+|......|++.+|...++++--...+...++++|+++...|++++|++...
T Consensus 398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567778888887775 44 55555557888888999999999997754323367789999999999999999987543
No 214
>PRK10941 hypothetical protein; Provisional
Probab=94.68 E-value=0.24 Score=38.31 Aligned_cols=71 Identities=10% Similarity=-0.032 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHH
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLA 78 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~ 78 (136)
-++.+-.-+++.++++.|+-.+|+++.+.| +|..+-.-|..|++.|.++.|..=++.+- ..+..+..-.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 356677778999999999999999999999 88889999999999999999988665542 133455444433
No 215
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.36 E-value=0.34 Score=39.10 Aligned_cols=80 Identities=10% Similarity=-0.070 Sum_probs=63.9
Q ss_pred HHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc--ccc---CcchHHHHHHHHHHccChhh
Q 032655 17 VSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLR---DLRFRYLAAKCLEELRSGTS 90 (136)
Q Consensus 17 l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~---~~~~~~l~a~c~~~l~~~~e 90 (136)
++.|-|++|.-.|+|++.++| +.=..+-++.++-++|+++++.+...+..- ... ...-+--.|.|+.+-++|+.
T Consensus 186 ~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 346899999999999999999 555889999999999999999998876542 111 11234567999999999999
Q ss_pred hhhhhh
Q 032655 91 VCRCSV 96 (136)
Q Consensus 91 a~~~~~ 96 (136)
|++..+
T Consensus 266 aleIyD 271 (491)
T KOG2610|consen 266 ALEIYD 271 (491)
T ss_pred HHHHHH
Confidence 987554
No 216
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.21 Score=39.93 Aligned_cols=87 Identities=22% Similarity=0.198 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccC-CChH--HH--HHHHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHH
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALT-NDPA--DV--YMQAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAK 80 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~-~~~~--~~--~~la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~ 80 (136)
+..+.-=-.|...-.|..|+....+.+... |+|+ .+ ..-|-|.+..|+|.+|+.=+ +...+.+.|..|++=-|.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 333444444556667999998888877655 4443 33 33578999999999999854 555668899999999999
Q ss_pred HHHHccChhhhhh
Q 032655 81 CLEELRSGTSVCR 93 (136)
Q Consensus 81 c~~~l~~~~ea~~ 93 (136)
|+++|+++.+|.+
T Consensus 162 c~~eLe~~~~a~n 174 (390)
T KOG0551|consen 162 CLLELERFAEAVN 174 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 217
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.29 E-value=0.27 Score=33.12 Aligned_cols=91 Identities=13% Similarity=0.008 Sum_probs=51.3
Q ss_pred HHHHhccCChHHHHHHHhcCcc-cccCc---chHHHHHHHHHHccChhh-----------hhhhhhhhhcccchHhHHHH
Q 032655 46 AQALFLGRHYRRPFHLLNSSKI-VLRDL---RFRYLAAKCLEELRSGTS-----------VCRCSVMLRLLKMISSAICF 110 (136)
Q Consensus 46 a~~l~~~g~~~~A~~~l~~~~l-~~~~~---~~~~l~a~c~~~l~~~~e-----------a~~~~~~~~~~~~~~a~i~~ 110 (136)
|.-++..|++-+|+++++..-+ ...+. ....+.|..++++..--| +++.......-.|..+...|
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 4556677777777776655332 11222 345556666655544433 11111111112355566677
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhccC
Q 032655 111 LRGKAYEALGNCAQARLWLVSCDEFT 136 (136)
Q Consensus 111 l~G~~~~~~~~~~~A~~~y~~AL~~~ 136 (136)
.+|.=+...--+++++.-=+++|.+|
T Consensus 83 ~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 83 ELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 78887777777778887777777764
No 218
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.91 E-value=0.051 Score=27.35 Aligned_cols=24 Identities=13% Similarity=0.286 Sum_probs=17.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHhc
Q 032655 41 DVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 41 ~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
..|.+|.|++..|++.+|...++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~ 25 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQR 25 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Confidence 467777777777777777776655
No 219
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.68 E-value=0.06 Score=28.23 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=11.6
Q ss_pred chHhHHHHHHHHHHHHcCChHHHH
Q 032655 103 MISSAICFLRGKAYEALGNCAQAR 126 (136)
Q Consensus 103 ~~~a~i~~l~G~~~~~~~~~~~A~ 126 (136)
|..+..++.+|.+|...|+.++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334444445555555555555443
No 220
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=93.50 E-value=0.18 Score=41.63 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=61.3
Q ss_pred HHHcCChhhHHHHHHHHhccC-C---ChHHHHH--------HHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHH
Q 032655 16 CVSKHLYSSAIFFANEVAALT-N---DPADVYM--------QAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCL 82 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~-~---~~~~~~~--------la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~ 82 (136)
....++|.+|+-+++|..++. | +++|++- +..||.+.++++-|+... ++..+++.++.-..-.|-|.
T Consensus 193 a~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavf 272 (569)
T PF15015_consen 193 AVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVF 272 (569)
T ss_pred HHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHH
Confidence 344588999999999988776 3 5666554 567999999999998855 66566777777777789999
Q ss_pred HHccChhhhh
Q 032655 83 EELRSGTSVC 92 (136)
Q Consensus 83 ~~l~~~~ea~ 92 (136)
..+.+|.||.
T Consensus 273 R~LeRy~eAa 282 (569)
T PF15015_consen 273 RRLERYSEAA 282 (569)
T ss_pred HHHHHHHHHH
Confidence 9999999984
No 221
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.45 E-value=1.1 Score=40.05 Aligned_cols=130 Identities=15% Similarity=0.111 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHHHHHH------cCChhhHHHHHHHHhccCC-C-hHHHHHHHHHHhccCChHHHHHHHhcCcccc---
Q 032655 1 MREEEIEKLRGLVRDCVS------KHLYSSAIFFANEVAALTN-D-PADVYMQAQALFLGRHYRRPFHLLNSSKIVL--- 69 (136)
Q Consensus 1 ~~~~~~~~lr~~i~~~l~------~~~~~~Alf~aekl~~~~~-~-~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~--- 69 (136)
|.|+..+-.|..-++-+- +|.|++|+-.||. .+- . ....|.+|+-+-..++.++|+++.++.+...
T Consensus 815 MlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~---~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev 891 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAET---KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEV 891 (1416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhh---ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHH
Confidence 345555555555444443 3555555555442 111 2 2357778888888899999999888765311
Q ss_pred -----cCcch-------------HHHHHHHHHHccChhhhhhhhhhh---------------hc------ccchHhHHHH
Q 032655 70 -----RDLRF-------------RYLAAKCLEELRSGTSVCRCSVML---------------RL------LKMISSAICF 110 (136)
Q Consensus 70 -----~~~~~-------------~~l~a~c~~~l~~~~ea~~~~~~~---------------~~------~~~~~a~i~~ 110 (136)
.+|.. +---|+=+.-.|+-+-|+...... .+ .-.-.-+.||
T Consensus 892 ~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcY 971 (1416)
T KOG3617|consen 892 FRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACY 971 (1416)
T ss_pred HHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHH
Confidence 01111 111122223333333333211100 00 1123456799
Q ss_pred HHHHHHHHcCChHHHHHHHHHhh
Q 032655 111 LRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 111 l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
.+|+-|+..|...+|+.+|.+|=
T Consensus 972 hlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 972 HLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999874
No 222
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=1.2 Score=37.48 Aligned_cols=119 Identities=14% Similarity=0.039 Sum_probs=82.9
Q ss_pred HHHHcCChhhHHHHHHHHhccCCChH----HHHHHHHHHhccCChHHHHHHHhcCcccccC--------cchHHHHHHHH
Q 032655 15 DCVSKHLYSSAIFFANEVAALTNDPA----DVYMQAQALFLGRHYRRPFHLLNSSKIVLRD--------LRFRYLAAKCL 82 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~~~~----~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~--------~~~~~l~a~c~ 82 (136)
+|..-+.|++|.|.+--+..++.+.+ -...+|..|.++|+-..-.++++..+-..++ ..+.|+.|.-.
T Consensus 376 ys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfa 455 (629)
T KOG2300|consen 376 YSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFA 455 (629)
T ss_pred HhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 34455889999999999888886433 2456789999999977777777665432222 25689999999
Q ss_pred HHccChhhhhhhhhh----h--hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 83 EELRSGTSVCRCSVM----L--RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 83 ~~l~~~~ea~~~~~~----~--~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
+..+++.||-..+.. . -|-+...+--..|+|.++.-.||..++.+--+-|+
T Consensus 456 f~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpam 512 (629)
T KOG2300|consen 456 FKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAM 512 (629)
T ss_pred HHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHH
Confidence 999999999543222 1 11233445555588999999999988876544443
No 223
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.27 E-value=0.72 Score=35.22 Aligned_cols=118 Identities=13% Similarity=-0.074 Sum_probs=86.4
Q ss_pred HHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc-CcccccCcchHHHHHHHHHHccChhhhhhh
Q 032655 17 VSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS-SKIVLRDLRFRYLAAKCLEELRSGTSVCRC 94 (136)
Q Consensus 17 l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~ 94 (136)
-+.|.+.=|-.=++..+++.| -|+-.-++|.-+...|+|+-|++.+.+ ..+++...-.....|..++--|+|.-|.+.
T Consensus 76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHH
Confidence 345677777777888999999 455666789999999999999998865 456777767777788888888888776321
Q ss_pred h---------------------------------------------hh-----hhc----------------cc----ch
Q 032655 95 S---------------------------------------------VM-----LRL----------------LK----MI 104 (136)
Q Consensus 95 ~---------------------------------------------~~-----~~~----------------~~----~~ 104 (136)
. ++ .++ ++ ..
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~ 235 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEH 235 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHH
Confidence 0 00 000 11 23
Q ss_pred HhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 105 SSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 105 ~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
-+..++.+|+-|..+|...+|..-||-|+.
T Consensus 236 LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 236 LTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 445688999999999999999999998764
No 224
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.00 E-value=3.3 Score=31.81 Aligned_cols=92 Identities=14% Similarity=0.075 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHcC-ChhhHHHHHHHHhccC----C----ChH-------HHHHHHHHHhccCChHH---HHHHHh
Q 032655 3 EEEIEKLRGLVRDCVSKH-LYSSAIFFANEVAALT----N----DPA-------DVYMQAQALFLGRHYRR---PFHLLN 63 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~-~~~~Alf~aekl~~~~----~----~~~-------~~~~la~~l~~~g~~~~---A~~~l~ 63 (136)
+++.+.+-..-.+-+..+ ++++|++|-++++... + .++ -...++.++...+.++. |..+++
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~ 111 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR 111 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 456666667777778888 9999999999999883 1 111 26678999999998764 444443
Q ss_pred cCcc-cccCcchHHHHHHHHHHccChhhhhhh
Q 032655 64 SSKI-VLRDLRFRYLAAKCLEELRSGTSVCRC 94 (136)
Q Consensus 64 ~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~ 94 (136)
-... .+.++....+.-+.+.+.++.+++.+.
T Consensus 112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~ 143 (278)
T PF08631_consen 112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEI 143 (278)
T ss_pred HHHHhCCCCcHHHHHHHHHHhccCChhHHHHH
Confidence 3321 346777877888888886666666543
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.95 E-value=0.99 Score=37.67 Aligned_cols=48 Identities=13% Similarity=0.313 Sum_probs=25.5
Q ss_pred HcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655 18 SKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 18 ~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~ 65 (136)
.+|+|..+..++.=+..+.|+|...=++|.|++-+..|.+|..++.+.
T Consensus 474 sqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred hcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 345555555555555555555555555555555555555555555443
No 226
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.63 E-value=0.069 Score=42.69 Aligned_cols=87 Identities=16% Similarity=0.059 Sum_probs=42.2
Q ss_pred HHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHH
Q 032655 48 ALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQAR 126 (136)
Q Consensus 48 ~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~ 126 (136)
--+..|.+..|++++.+. .+.+......--.|..++++++...|+......+..++..+.-+-.+|...+.+|+.++|.
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 344445555555544332 2222333333334455556666655554333222222333333445666666666666666
Q ss_pred HHHHHhhc
Q 032655 127 LWLVSCDE 134 (136)
Q Consensus 127 ~~y~~AL~ 134 (136)
..+..|++
T Consensus 203 ~dl~~a~k 210 (377)
T KOG1308|consen 203 HDLALACK 210 (377)
T ss_pred HHHHHHHh
Confidence 66666654
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.61 E-value=0.3 Score=40.54 Aligned_cols=75 Identities=16% Similarity=0.047 Sum_probs=57.3
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC---C--hHHHHHHHHHHhccCChHHHHHHHhcCcc--cccCcchHHHHHHHHHHcc
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN---D--PADVYMQAQALFLGRHYRRPFHLLNSSKI--VLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~---~--~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~~~~~~~l~a~c~~~l~ 86 (136)
+-...+++.+.|+-+.+++....+ . .--+|-+|+|+...++|++|.+......- .-++.-..|+.|-|+..++
T Consensus 275 R~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~ 354 (468)
T PF10300_consen 275 RLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLG 354 (468)
T ss_pred HHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc
Confidence 344556999999999998774332 2 23588899999999999999986654321 1246678899999999999
Q ss_pred Ch
Q 032655 87 SG 88 (136)
Q Consensus 87 ~~ 88 (136)
+.
T Consensus 355 ~~ 356 (468)
T PF10300_consen 355 RE 356 (468)
T ss_pred cc
Confidence 99
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.56 E-value=0.38 Score=33.91 Aligned_cols=62 Identities=18% Similarity=-0.077 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 74 FRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 74 ~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
-.-+.|..+.+.|+.++|++.....+.-.|..++++.++.+.++-+|+.++|.+-+.+||++
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 45678889999999999998776655555678888999999999999999999999999976
No 229
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.53 E-value=1.6 Score=37.05 Aligned_cols=111 Identities=15% Similarity=0.087 Sum_probs=70.8
Q ss_pred CChhhHHHHHHHHhcc------CCChHHHHHHHHHHhccC-----ChHHHHHHHhcCcccccCcchHHHHHHHHHHcc--
Q 032655 20 HLYSSAIFFANEVAAL------TNDPADVYMQAQALFLGR-----HYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELR-- 86 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~------~~~~~~~~~la~~l~~~g-----~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~-- 86 (136)
.+.+.|++|..++... ...+...+-+|.||.... ++..|+.++.+.. ...++.+.+++|.|+..--
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA-~~g~~~a~~~lg~~~~~g~~~ 341 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAA-ELGNPDAQYLLGVLYETGTKE 341 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHH-hcCCchHHHHHHHHHHcCCcc
Confidence 5889999999998661 235667888999999864 5677988775543 2478899999999998876
Q ss_pred -ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc----CChHHHHHHHHHhh
Q 032655 87 -SGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL----GNCAQARLWLVSCD 133 (136)
Q Consensus 87 -~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~----~~~~~A~~~y~~AL 133 (136)
++..|.+....... .-.....+.+|.||+.- -+.++|+.||++|-
T Consensus 342 ~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA 391 (552)
T KOG1550|consen 342 RDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAA 391 (552)
T ss_pred ccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHH
Confidence 23344332211110 01122234445555432 46777777777763
No 230
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=92.52 E-value=0.099 Score=43.28 Aligned_cols=84 Identities=10% Similarity=0.069 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHH-HHhcCcccccCcchHHHHHHHHHHcc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFH-LLNSSKIVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~-~l~~~~l~~~~~~~~~l~a~c~~~l~ 86 (136)
+..-....+--+.|+.|+-.+-|++.+.| ...-.-.-++.+...+.|+.|++ +++...+++....|++..|.+|.+++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34444556667899999999999999999 44455556789999999999988 77777888889999999999999999
Q ss_pred Chhhhh
Q 032655 87 SGTSVC 92 (136)
Q Consensus 87 ~~~ea~ 92 (136)
++.+|.
T Consensus 87 ~~~~A~ 92 (476)
T KOG0376|consen 87 EFKKAL 92 (476)
T ss_pred HHHHHH
Confidence 999985
No 231
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.47 E-value=0.22 Score=26.65 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHh
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLN 63 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~ 63 (136)
++.++-+|-++++.|+|++|+++++
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5788999999999999999998843
No 232
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=92.41 E-value=0.2 Score=35.07 Aligned_cols=69 Identities=22% Similarity=0.161 Sum_probs=54.3
Q ss_pred hHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhh
Q 032655 24 SAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 24 ~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
.-.-.|.+.+.+-++++.+...|+-.+..|+|.-|.++++..-. ++.+...+.+.+.++.++|.-.+..
T Consensus 55 ~p~~~A~~~v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~ 124 (141)
T PF14863_consen 55 PPEEEAKRYVELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENA 124 (141)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSH
T ss_pred ChHHHHHHHHHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCH
Confidence 34456778888888899999999999999999999999877543 6788899999999999999877643
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.36 E-value=2.2 Score=33.12 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHH
Q 032655 4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKC 81 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c 81 (136)
|+++-.+..+.-|.++|.+++|.-.-||+.-+.. +|++... -|.||+.+++.......-.+...-.++.
T Consensus 89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~Alq---------lYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQ---------LYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHH---------HHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 5566677777888888888888888888775543 6766443 2566667666554333334455566777
Q ss_pred HHHccChhhhhh
Q 032655 82 LEELRSGTSVCR 93 (136)
Q Consensus 82 ~~~l~~~~ea~~ 93 (136)
+.++++|.||.-
T Consensus 160 lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 160 LVRLEKFTEAAT 171 (308)
T ss_pred hhhhHHhhHHHH
Confidence 899999999753
No 234
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.27 E-value=0.22 Score=25.22 Aligned_cols=25 Identities=8% Similarity=0.103 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhc
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
+.++.+|.++...|+++.|++.+++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3466777777777777777777655
No 235
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=92.27 E-value=4.9 Score=32.77 Aligned_cols=133 Identities=13% Similarity=0.009 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHH-------HHHHHhccCCh--------------HHHHHH
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYM-------QAQALFLGRHY--------------RRPFHL 61 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~-------la~~l~~~g~~--------------~~A~~~ 61 (136)
++...++|.+-+.+...++|+.|.-.-+-+...+.+...|.+ .|.|+++.|.. +.|+..
T Consensus 205 ~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~ 284 (414)
T PF12739_consen 205 DSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYT 284 (414)
T ss_pred CChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHH
Confidence 456778999999999999999999999999887765444444 35678888754 233332
Q ss_pred HhcC-----cccccCcchHHHHHHHHHHccChhhhhhh--------h----h-------------hh--hcc-c--ch--
Q 032655 62 LNSS-----KIVLRDLRFRYLAAKCLEELRSGTSVCRC--------S----V-------------ML--RLL-K--MI-- 104 (136)
Q Consensus 62 l~~~-----~l~~~~~~~~~l~a~c~~~l~~~~ea~~~--------~----~-------------~~--~~~-~--~~-- 104 (136)
..+. ....-...|..+.+.++.-.+.|.++.+. . . .. ... . +.
T Consensus 285 Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~ 364 (414)
T PF12739_consen 285 YLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLT 364 (414)
T ss_pred HHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccch
Confidence 2221 11123456888999999999999886321 0 0 01 111 1 22
Q ss_pred ---HhHHHHHH-HHHHHHcCChHHHHHHHHHhhcc
Q 032655 105 ---SSAICFLR-GKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 105 ---~a~i~~l~-G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.++.++++ |.-|.+.|++..|..||..|+..
T Consensus 365 r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~v 399 (414)
T PF12739_consen 365 RFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQV 399 (414)
T ss_pred hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 56677766 99999999999999999999853
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=3.4 Score=33.53 Aligned_cols=111 Identities=10% Similarity=-0.062 Sum_probs=67.2
Q ss_pred CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-----cccCcchHHHHHHHHHHccChhhhhh
Q 032655 20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-----VLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-----~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
|.+-+|..-=||++.-.| +.-.|-.--..+|.+|....-...+++.-- .|-..-...+++.|+.++|-|++|+.
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk 196 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK 196 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence 444455555578888888 555555555567777776655555544210 11112345788999999999999986
Q ss_pred hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHH
Q 032655 94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLV 130 (136)
Q Consensus 94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~ 130 (136)
.....+..++..+=..+-+..+++.-++.++++++-.
T Consensus 197 ~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 197 QADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 5544333334444444555666666666666666543
No 237
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.81 E-value=0.18 Score=40.82 Aligned_cols=119 Identities=9% Similarity=-0.049 Sum_probs=66.5
Q ss_pred HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHh---ccCChHH----HHHHHhcCcccc---------cCcchHHH
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALF---LGRHYRR----PFHLLNSSKIVL---------RDLRFRYL 77 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~---~~g~~~~----A~~~l~~~~l~~---------~~~~~~~l 77 (136)
..-+..+|+.-+---|+=+...| .|++-..=....| ..|++.. +-.-+++..+.. +..+ .-=
T Consensus 24 F~~DL~~WE~diK~KDkel~~Q~~~Pan~~~P~r~~FR~~ksGK~~~ssKK~Rs~I~~~dL~vd~I~~~LL~~~SE-iKE 102 (536)
T KOG4648|consen 24 FVKDLYSWEQDIKNKDKELQKQPLSPANKDLPVRSHFRTDKSGKESPSSKKARSPIEKQDLPVDPIAQQLLKKASE-IKE 102 (536)
T ss_pred HHHHHHHHHHHHHhhhHHHHhCCCCccccCCchhhhcccCCCCCcCcchhhhhcchhhccCCccHHHHHHHHhhHH-HHH
Confidence 34456778888888888776664 3322111111122 2455522 222233322211 0111 244
Q ss_pred HHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 78 AAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 78 ~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.|.-+|+.|+|+||+|+.....+-.|..+..+-+++.+|.++.++..|..-...|+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 688899999999999987654432333333444778888888888777766666654
No 238
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=91.79 E-value=1.3 Score=40.11 Aligned_cols=122 Identities=10% Similarity=-0.040 Sum_probs=79.6
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC---ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN---DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~---~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~ 87 (136)
.++.+.+...|+.|.-..-+.-...| -.++|...|.-+...++++.|+.-++++ ..+|++..|+--+|.+|...|+
T Consensus 532 ~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 532 SADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred HHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc
Confidence 34444444555555444222222223 2346777888888888888888877654 3477888888889999999999
Q ss_pred hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
|.-|+....+...-.|..-..-|-...+-+.+|.+++|+..+.+.+
T Consensus 612 y~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 612 YSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred eehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9888765543221224444455667788888888888888777654
No 239
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.60 E-value=1.4 Score=33.20 Aligned_cols=81 Identities=11% Similarity=0.003 Sum_probs=64.1
Q ss_pred HHHHHcCChhhHHHHHHHHhccCCC----hHHHHH--HHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHHHHcc
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTND----PADVYM--QAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~~----~~~~~~--la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~~~l~ 86 (136)
.....+|.|+.|.---..++.++|+ ..++.+ -|-|+...+.++.|+.-+ +...+.+....+.--.|..|-++.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3445679999999999999999982 224444 488999999999999966 555666777777777799999999
Q ss_pred Chhhhhhh
Q 032655 87 SGTSVCRC 94 (136)
Q Consensus 87 ~~~ea~~~ 94 (136)
+|++|++.
T Consensus 183 k~eealeD 190 (271)
T KOG4234|consen 183 KYEEALED 190 (271)
T ss_pred hHHHHHHH
Confidence 99999753
No 240
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.42 E-value=0.27 Score=25.79 Aligned_cols=23 Identities=4% Similarity=0.076 Sum_probs=14.9
Q ss_pred HHHHHHHHhccCChHHHHHHHhc
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
+..+|.++...|+|++|+++.++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45567777777777777776655
No 241
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=91.39 E-value=0.29 Score=28.50 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=12.2
Q ss_pred HHHHHHHHhccCChHHHHHHHhc
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
+|++|..+++.|+|.+|..+++.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~ 26 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDA 26 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 45555555555555555555544
No 242
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.38 E-value=2.9 Score=32.63 Aligned_cols=83 Identities=16% Similarity=0.045 Sum_probs=46.1
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccC-CChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccCh
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALT-NDPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~-~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~ 88 (136)
+||.-.-....+.+|....+-+..-+ |.|.-.--+|.|....|+|++|..+++.+.. ..+.|+..-..-.|-.-+|+-
T Consensus 178 awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 178 AWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 45555555555666666666665533 3555555566666666666666665544332 334555555555555556665
Q ss_pred hhhhh
Q 032655 89 TSVCR 93 (136)
Q Consensus 89 ~ea~~ 93 (136)
.++.+
T Consensus 258 ~~~~~ 262 (299)
T KOG3081|consen 258 AEVTE 262 (299)
T ss_pred hHHHH
Confidence 55543
No 243
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.34 E-value=2 Score=30.25 Aligned_cols=58 Identities=17% Similarity=0.058 Sum_probs=44.0
Q ss_pred CCChHHHHHHHHHHhccCChH---HHHHHHhcCc--c-cccCcchHHHHHHHHHHccChhhhhh
Q 032655 36 TNDPADVYMQAQALFLGRHYR---RPFHLLNSSK--I-VLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 36 ~~~~~~~~~la~~l~~~g~~~---~A~~~l~~~~--l-~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
+++.++-|.+|+|+-.+.+-. +-+.+|+..- - ....-.|.|.+|..++++|+|+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~ 92 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLR 92 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHH
Confidence 557889999999999988855 4455664422 1 22556899999999999999999863
No 244
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.18 E-value=2 Score=33.00 Aligned_cols=117 Identities=16% Similarity=0.085 Sum_probs=71.0
Q ss_pred HHHcCChhhHHHHHHHHhccCC--ChHH-------HHHHHHHHhccC-ChHHHHHHHhcC-cc-------ccc-------
Q 032655 16 CVSKHLYSSAIFFANEVAALTN--DPAD-------VYMQAQALFLGR-HYRRPFHLLNSS-KI-------VLR------- 70 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~~--~~~~-------~~~la~~l~~~g-~~~~A~~~l~~~-~l-------~~~------- 70 (136)
+..+|+.+-|..+..|+-.+-+ +|+. .|..|..++..+ +|..|...++++ .+ ...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 4578999999999999876652 4443 777899999999 998887776542 22 112
Q ss_pred CcchHHHHHHHHHHccChhhhhhhh---hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 71 DLRFRYLAAKCLEELRSGTSVCRCS---VMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 71 ~~~~~~l~a~c~~~l~~~~ea~~~~---~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
...+..+++.++.+.+.++...... ..-..+.|....++++.=++..+.++.+.+-+-+.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~m 147 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRM 147 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHH
Confidence 2246788899999988886543321 1111123333444444444444455555555544443
No 245
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.14 E-value=1.9 Score=34.67 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC--ChH-HHHHHHHHHhccCChHHHHHHHhcCcc------cccCcchHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN--DPA-DVYMQAQALFLGRHYRRPFHLLNSSKI------VLRDLRFRYLAA 79 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~--~~~-~~~~la~~l~~~g~~~~A~~~l~~~~l------~~~~~~~~~l~a 79 (136)
|-.-|+.-.+.|.|.||+-||.-+++++| +|- ..+.+=.--.+.++|+=-+.+.++... ...-|.+.|-.|
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~a 185 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIA 185 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHH
Confidence 45566777778999999999999999999 444 355555566778889888887776432 123578999999
Q ss_pred HHHHHccCh
Q 032655 80 KCLEELRSG 88 (136)
Q Consensus 80 ~c~~~l~~~ 88 (136)
.|++.+++-
T Consensus 186 LA~~~l~~~ 194 (360)
T PF04910_consen 186 LAYFRLEKE 194 (360)
T ss_pred HHHHHhcCc
Confidence 999999998
No 246
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=90.98 E-value=0.98 Score=35.01 Aligned_cols=77 Identities=14% Similarity=0.073 Sum_probs=57.9
Q ss_pred HHHHHHHHHHH-HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHH
Q 032655 3 EEEIEKLRGLV-RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAA 79 (136)
Q Consensus 3 ~~~~~~lr~~i-~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a 79 (136)
.+++.||.... .-++...+++.|++.+++++.++| +|..+---|..|.+.|-++-|+.-+..+.- .+..+.|-.+.+
T Consensus 177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 34555554444 456677999999999999999999 898999999999999999999987766432 345555544433
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.93 E-value=3 Score=34.57 Aligned_cols=28 Identities=14% Similarity=-0.040 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 105 SSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 105 ~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
....|-.+|....++||.+.|.+||+++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 4457889999999999999999999886
No 248
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.87 E-value=3.5 Score=31.85 Aligned_cols=97 Identities=11% Similarity=-0.073 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcCcc-c----ccCcchHHHHHHHHHHccChhhhhhhhh--------hh-------
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSSKI-V----LRDLRFRYLAAKCLEELRSGTSVCRCSV--------ML------- 98 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~----~~~~~~~~l~a~c~~~l~~~~ea~~~~~--------~~------- 98 (136)
...+..++......|++..|...+....- . ...+...+-.++.+.+.|+..+|+.... ..
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 34566667777777777777666654321 0 0155666667777777777777643210 00
Q ss_pred -----------------hc--ccchHhHHHHHHHHHHHHc------CChHHHHHHHHHhhcc
Q 032655 99 -----------------RL--LKMISSAICFLRGKAYEAL------GNCAQARLWLVSCDEF 135 (136)
Q Consensus 99 -----------------~~--~~~~~a~i~~l~G~~~~~~------~~~~~A~~~y~~AL~~ 135 (136)
.+ .....+-+++++|+-...+ +..+++...|++|.++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~ 287 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL 287 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh
Confidence 00 1134566777889999888 9999999999998764
No 249
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=90.68 E-value=0.59 Score=28.23 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=23.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+...|.-++..|++++|+++|++|+..
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 446799999999999999999999864
No 250
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.45 E-value=1.4 Score=33.84 Aligned_cols=61 Identities=10% Similarity=-0.013 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHccChhhhhhhhhhhhc------ccchHhHHHHHHHHHHHHc-CChHHHHHHHHHhh
Q 032655 73 RFRYLAAKCLEELRSGTSVCRCSVMLRL------LKMISSAICFLRGKAYEAL-GNCAQARLWLVSCD 133 (136)
Q Consensus 73 ~~~~l~a~c~~~l~~~~ea~~~~~~~~~------~~~~~a~i~~l~G~~~~~~-~~~~~A~~~y~~AL 133 (136)
...|.-|-=|++-.+.++|++.....++ .....+--+.-+|.+|+.- .++++|+.+|++|=
T Consensus 74 at~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aa 141 (288)
T KOG1586|consen 74 ATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAA 141 (288)
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3345544445556677777765543221 1234444455778888755 88888888888763
No 251
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.41 E-value=0.88 Score=26.45 Aligned_cols=24 Identities=17% Similarity=-0.043 Sum_probs=19.7
Q ss_pred chHHHHHHHHHHccChhhhhhhhh
Q 032655 73 RFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 73 ~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
+|.|.+|..++++|+|++|.....
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~ 25 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCD 25 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHH
Confidence 588999999999999999976543
No 252
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=90.33 E-value=0.46 Score=29.75 Aligned_cols=31 Identities=16% Similarity=-0.002 Sum_probs=26.0
Q ss_pred HhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 105 SSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 105 ~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+..+..+..-+++.|++++|+.+|++|.+.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4455567799999999999999999999764
No 253
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.27 E-value=0.54 Score=22.84 Aligned_cols=23 Identities=22% Similarity=0.106 Sum_probs=14.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHh
Q 032655 41 DVYMQAQALFLGRHYRRPFHLLN 63 (136)
Q Consensus 41 ~~~~la~~l~~~g~~~~A~~~l~ 63 (136)
..+.+|..+...|++.+|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34566666666666666666553
No 254
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.80 E-value=0.89 Score=39.20 Aligned_cols=87 Identities=13% Similarity=-0.082 Sum_probs=57.7
Q ss_pred hccCChHHHHHHHhcCcc-cc-cCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHH
Q 032655 50 FLGRHYRRPFHLLNSSKI-VL-RDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARL 127 (136)
Q Consensus 50 ~~~g~~~~A~~~l~~~~l-~~-~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~ 127 (136)
.-.|+.+.|..+|..+-+ .+ ..--....+|+.+.+-|-..+|-.-..-.+.-+..+.-.+|.+|..|..+.|...|++
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 346888999988866543 22 3333456778888887766665332221121122344456678999999999999999
Q ss_pred HHHHhhccC
Q 032655 128 WLVSCDEFT 136 (136)
Q Consensus 128 ~y~~AL~~~ 136 (136)
.|++|++.|
T Consensus 698 ~~~~a~~~~ 706 (886)
T KOG4507|consen 698 AFRQALKLT 706 (886)
T ss_pred HHHHHHhcC
Confidence 999999864
No 255
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.37 E-value=0.7 Score=37.83 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=42.2
Q ss_pred HHHHHHHHhccCChHHHHHHHhcCccccc---------CcchHHHHHHHHHHccChhhhhh
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSSKIVLR---------DLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~~l~~~---------~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
+.-+...+-+.|+|+.|++.++...+..+ |....|-.|.|++.+++|.+|+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir 185 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIR 185 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHH
Confidence 34456688899999999999988765332 45568999999999999999974
No 256
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=89.36 E-value=0.67 Score=29.79 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=22.4
Q ss_pred HHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHH
Q 032655 29 ANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLL 62 (136)
Q Consensus 29 aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l 62 (136)
.++.++.+| +++..|.+|..+...|+++.|++.+
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~L 45 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQL 45 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455566677 6677777777777777777777644
No 257
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.13 E-value=0.39 Score=42.37 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=63.2
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcCcccc------cCcchHHHHHHHHHHc---cChhhhhhhhhhhhc-ccchHhH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSSKIVL------RDLRFRYLAAKCLEEL---RSGTSVCRCSVMLRL-LKMISSA 107 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~------~~~~~~~l~a~c~~~l---~~~~ea~~~~~~~~~-~~~~~a~ 107 (136)
.++.|..+-..|....+|..-+.+.+..+-.+ .+....|.+|.++..- |+-+.|++....-+. .-+..+.
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 46778889889999999987777765533222 1223335555544433 333445554332222 2356778
Q ss_pred HHHHHHHHHHHc---------CChHHHHHHHHHhhcc
Q 032655 108 ICFLRGKAYEAL---------GNCAQARLWLVSCDEF 135 (136)
Q Consensus 108 i~~l~G~~~~~~---------~~~~~A~~~y~~AL~~ 135 (136)
++++-|+||+.+ +.++-|++||++|.+.
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 889999999765 6788999999999863
No 258
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.87 E-value=4.4 Score=34.37 Aligned_cols=107 Identities=11% Similarity=-0.005 Sum_probs=71.4
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHhcc-----CChHHHHHHHhcCcc------cccCcchHHHHHHHHHHcc-----Ch
Q 032655 25 AIFFANEVAALTNDPADVYMQAQALFLG-----RHYRRPFHLLNSSKI------VLRDLRFRYLAAKCLEELR-----SG 88 (136)
Q Consensus 25 Alf~aekl~~~~~~~~~~~~la~~l~~~-----g~~~~A~~~l~~~~l------~~~~~~~~~l~a~c~~~l~-----~~ 88 (136)
..|-.-+-.+..++....+.+|+|++.- .+.+.|+.+++.... ..-++...+-+|.||.+-. ++
T Consensus 230 ~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~ 309 (552)
T KOG1550|consen 230 EAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDY 309 (552)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccH
Confidence 3444444455556778888999998876 568899998876521 2336778899999999964 23
Q ss_pred hhhhhhhhhhhc-ccchHhHHHHHHHHHHHHcC---ChHHHHHHHHHhhc
Q 032655 89 TSVCRCSVMLRL-LKMISSAICFLRGKAYEALG---NCAQARLWLVSCDE 134 (136)
Q Consensus 89 ~ea~~~~~~~~~-~~~~~a~i~~l~G~~~~~~~---~~~~A~~~y~~AL~ 134 (136)
+.|........+ +.| ...+++|.+|.... |..+|.++|..|-+
T Consensus 310 ~~A~~~~~~aA~~g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~ 356 (552)
T KOG1550|consen 310 EKALKLYTKAAELGNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAK 356 (552)
T ss_pred HHHHHHHHHHHhcCCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHH
Confidence 334433222111 222 34478899998877 66899999998853
No 259
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=88.76 E-value=2.2 Score=38.00 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=60.9
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCCChHH-HHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhh
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTNDPAD-VYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~~~~~-~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
|-.|-+.|.|++|+-.|+-. -.|..+- ---+=+.+...||-.+|-++-.+-+ + . .-.-+-|.+.|+.-.|
T Consensus 564 igmy~~lhkwde~i~lae~~--~~p~~eklk~sy~q~l~dt~qd~ka~elk~sdg-d--~----laaiqlyika~~p~~a 634 (1636)
T KOG3616|consen 564 IGMYQELHKWDEAIALAEAK--GHPALEKLKRSYLQALMDTGQDEKAAELKESDG-D--G----LAAIQLYIKAGKPAKA 634 (1636)
T ss_pred HHHHHHHHhHHHHHHHHHhc--CChHHHHHHHHHHHHHHhcCchhhhhhhccccC-c--c----HHHHHHHHHcCCchHH
Confidence 34444556666666665532 1232221 1122345888999999888544322 1 1 1122345677888776
Q ss_pred hhh----hhhhhc-----cc---chHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655 92 CRC----SVMLRL-----LK---MISSAICFLRGKAYEALGNCAQARLWLVS 131 (136)
Q Consensus 92 ~~~----~~~~~~-----~~---~~~a~i~~l~G~~~~~~~~~~~A~~~y~~ 131 (136)
... .+...+ .+ -..+.++---|.+|++..++++|++||++
T Consensus 635 ~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkk 686 (1636)
T KOG3616|consen 635 ARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKK 686 (1636)
T ss_pred HHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHc
Confidence 431 111111 11 12333333559999999999999999986
No 260
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.28 E-value=3.1 Score=30.94 Aligned_cols=86 Identities=13% Similarity=-0.014 Sum_probs=63.5
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCCC----hHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccC
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTND----PADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~~----~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~ 87 (136)
+-....+.++++.|+---.-.+..+.+ +-.-..+|.+++..|+++.|+..|+...-..-.+...-+.|..+...|+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 344556778888887776666655542 2236778999999999999999998765322344457899999999999
Q ss_pred hhhhhhhhhh
Q 032655 88 GTSVCRCSVM 97 (136)
Q Consensus 88 ~~ea~~~~~~ 97 (136)
-++|......
T Consensus 175 k~~Ar~ay~k 184 (207)
T COG2976 175 KQEARAAYEK 184 (207)
T ss_pred hHHHHHHHHH
Confidence 9999765543
No 261
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.24 E-value=0.99 Score=21.86 Aligned_cols=22 Identities=23% Similarity=0.138 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q 032655 109 CFLRGKAYEALGNCAQARLWLV 130 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~ 130 (136)
.+.+|.++..+|+.++|...+.
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4566777777777777766554
No 262
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=87.87 E-value=0.48 Score=39.37 Aligned_cols=91 Identities=15% Similarity=0.043 Sum_probs=69.2
Q ss_pred HHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChH
Q 032655 45 QAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCA 123 (136)
Q Consensus 45 la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~ 123 (136)
.|...+.-+.|..|+.+. +...+++.+....-+.+..+++.+.|..|+......+..-|...-.++.+|..+.+++.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 355667778899998866 4456666777788889999999999999987655433222545555678899999999999
Q ss_pred HHHHHHHHhhcc
Q 032655 124 QARLWLVSCDEF 135 (136)
Q Consensus 124 ~A~~~y~~AL~~ 135 (136)
+|..-|....++
T Consensus 90 ~A~~~l~~~~~l 101 (476)
T KOG0376|consen 90 KALLDLEKVKKL 101 (476)
T ss_pred HHHHHHHHhhhc
Confidence 999999876654
No 263
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.86 E-value=4.8 Score=34.25 Aligned_cols=84 Identities=7% Similarity=-0.040 Sum_probs=58.9
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChh
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
-|...++.|+...|-.-..-++--.| .|.-+.+.+...-..|.|+.++..+....- ........-..-+..+++|+|+
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Confidence 34555566666665444444444456 888899999999999999999998866532 2233344455678999999999
Q ss_pred hhhhhh
Q 032655 90 SVCRCS 95 (136)
Q Consensus 90 ea~~~~ 95 (136)
+|....
T Consensus 375 ~a~s~a 380 (831)
T PRK15180 375 EALSTA 380 (831)
T ss_pred HHHHHH
Confidence 997644
No 264
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.64 E-value=2.7 Score=32.61 Aligned_cols=93 Identities=16% Similarity=0.017 Sum_probs=53.9
Q ss_pred HHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHH-------HccChhhhhhhhh----hhhc-ccchHhHHH
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLE-------ELRSGTSVCRCSV----MLRL-LKMISSAIC 109 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~-------~l~~~~ea~~~~~----~~~~-~~~~~a~i~ 109 (136)
...-+.|+....+|++|-..|.++.---.+...++-.|+.+. +++++.|+.+-.+ .+.. +.|..+++-
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAma 113 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMA 113 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHH
Confidence 444567777788899987766543211123344455555543 4556666654322 2332 566666666
Q ss_pred HHH-HHHHHHcCChHHHHHHHHHhhcc
Q 032655 110 FLR-GKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 110 ~l~-G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+=+ |++. ...+.++|+..|++++.+
T Consensus 114 leKAak~l-env~Pd~AlqlYqralav 139 (308)
T KOG1585|consen 114 LEKAAKAL-ENVKPDDALQLYQRALAV 139 (308)
T ss_pred HHHHHHHh-hcCCHHHHHHHHHHHHHH
Confidence 644 4444 345678888888887754
No 265
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.90 E-value=0.97 Score=23.54 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=15.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHhc
Q 032655 41 DVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 41 ~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
....+|.+|...|+|.+|..++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~ 27 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEE 27 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHH
Confidence 355677777777777777776654
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.17 E-value=5.9 Score=32.54 Aligned_cols=122 Identities=7% Similarity=-0.018 Sum_probs=75.1
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCCCh-------HHHHHHHHHHhccCChHHHHHHHhcC-------cccc----cCcch
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTNDP-------ADVYMQAQALFLGRHYRRPFHLLNSS-------KIVL----RDLRF 74 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~~~-------~~~~~la~~l~~~g~~~~A~~~l~~~-------~l~~----~~~~~ 74 (136)
-.-++..+.++.++-.+|+++-...+. .-..-+|..+.+..++++|+.+..++ .+.. -+-..
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~ 208 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMS 208 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHH
Confidence 344555666777777777776554311 12455777778888888776655332 2111 12345
Q ss_pred HHHHHHHHHHccChhhhhh---hhh-hhhc-cc-chHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 75 RYLAAKCLEELRSGTSVCR---CSV-MLRL-LK-MISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 75 ~~l~a~c~~~l~~~~ea~~---~~~-~~~~-~~-~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.|-.+.++..+|+.-+|-+ +.- ..+. +. +..+.-..-+|.||+..|..+.|-.-|.+|-.
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 6778888888888776644 221 1121 22 33333334669999999999999999998854
No 267
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=85.99 E-value=1 Score=28.43 Aligned_cols=31 Identities=10% Similarity=-0.126 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 105 SSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 105 ~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.|-.+..+|..++..|..+.|+.+|++++..
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 3445568899999999999999999999864
No 268
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.68 E-value=5.4 Score=25.28 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHH----HHHHHHHHhccCChHHHHHH
Q 032655 4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPAD----VYMQAQALFLGRHYRRPFHL 61 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~----~~~la~~l~~~g~~~~A~~~ 61 (136)
+.-+++..-++-| .++..+.|+---.+++.-.+++++ +-++.++|...|+|...+++
T Consensus 5 ~ak~~ie~GlkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 5 QAKQQIEKGLKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666 678888888888888888875554 55677888888888888774
No 269
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=85.49 E-value=14 Score=28.01 Aligned_cols=111 Identities=12% Similarity=0.057 Sum_probs=68.2
Q ss_pred ChhhHHHHHHHHhccCCChHHHHHHHHHHhc----cCChHHHHHHHhcCcccccCcch---HHHHHHHHHHccChhhhhh
Q 032655 21 LYSSAIFFANEVAALTNDPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLRDLRF---RYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 21 ~~~~Alf~aekl~~~~~~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~~~~~---~~l~a~c~~~l~~~~ea~~ 93 (136)
+++.|+.|.. ..+..+.+...+.+|..+.. ..++.+|...++++-. .-++.. .+.+|.++..-+ -..+..
T Consensus 92 ~~~~A~~~~~-~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~-~~~~~~ 168 (292)
T COG0790 92 DKTKAADWYR-CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAK-LGNVEAALAMYRLGLAYLSGL-QALAVA 168 (292)
T ss_pred cHHHHHHHHH-HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcCh-hhhccc
Confidence 4677888888 22333467788888888877 4488899888866532 234444 688888877754 111211
Q ss_pred hh-----hhhhc-ccchHhHHHHHHHHHHHHc----CChHHHHHHHHHhhc
Q 032655 94 CS-----VMLRL-LKMISSAICFLRGKAYEAL----GNCAQARLWLVSCDE 134 (136)
Q Consensus 94 ~~-----~~~~~-~~~~~a~i~~l~G~~~~~~----~~~~~A~~~y~~AL~ 134 (136)
.. ..... ........++++|.+|..- -|.++|+.||++|-+
T Consensus 169 ~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 169 YDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred HHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 11 00000 0012445567888888663 388999999998753
No 270
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.99 E-value=3.1 Score=33.02 Aligned_cols=87 Identities=14% Similarity=0.019 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKC 81 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c 81 (136)
.++.++++|..+-.-...+.+--|||---.-.. -..-....+..+..+|.|.+|+++.++. .+++-+......+-+.
T Consensus 243 tide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~ 322 (361)
T COG3947 243 TIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMAS 322 (361)
T ss_pred CHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence 355666666666665666666666653222111 1122334455566666666666666543 2345555566666666
Q ss_pred HHHccChhhh
Q 032655 82 LEELRSGTSV 91 (136)
Q Consensus 82 ~~~l~~~~ea 91 (136)
+..+|+--++
T Consensus 323 la~~gD~is~ 332 (361)
T COG3947 323 LATLGDEISA 332 (361)
T ss_pred HHHhccchhh
Confidence 6666664443
No 271
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=84.86 E-value=2 Score=21.70 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHc----CChHHHHHHHHHhhc
Q 032655 108 ICFLRGKAYEAL----GNCAQARLWLVSCDE 134 (136)
Q Consensus 108 i~~l~G~~~~~~----~~~~~A~~~y~~AL~ 134 (136)
.++.+|.+|..- .|.++|..+|++|-+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 467778888654 389999999998753
No 272
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=84.68 E-value=22 Score=29.59 Aligned_cols=132 Identities=16% Similarity=0.144 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCC-hHHHHHHHHHHhccCChHHHHHHHhcCcc--------------
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-PADVYMQAQALFLGRHYRRPFHLLNSSKI-------------- 67 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~-~~~~~~la~~l~~~g~~~~A~~~l~~~~l-------------- 67 (136)
|+-+-=||++--..-+.|..+.|.-+|+++....|. +=.+--.=......|+|+.|+.+++....
T Consensus 151 EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rA 230 (531)
T COG3898 151 ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRA 230 (531)
T ss_pred HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHH
Confidence 344456888888888999999999999999999883 22333333346678999999998865211
Q ss_pred ----------------------------cccCcchHHHHHHHHHHccChhhhhhh-------------------------
Q 032655 68 ----------------------------VLRDLRFRYLAAKCLEELRSGTSVCRC------------------------- 94 (136)
Q Consensus 68 ----------------------------~~~~~~~~~l~a~c~~~l~~~~ea~~~------------------------- 94 (136)
.+.-.......++.+++-|+..++...
T Consensus 231 vLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdt 310 (531)
T COG3898 231 VLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDT 310 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCc
Confidence 111123457788888888888775210
Q ss_pred ----h----------------hh-----hh---------------cccchHhHHHHHHHHHHHHc-CChHHHHHHHHHhh
Q 032655 95 ----S----------------VM-----LR---------------LLKMISSAICFLRGKAYEAL-GNCAQARLWLVSCD 133 (136)
Q Consensus 95 ----~----------------~~-----~~---------------~~~~~~a~i~~l~G~~~~~~-~~~~~A~~~y~~AL 133 (136)
. .. .+ +....-.++++|+..|-+.- |+-.++..|..+++
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 0 00 00 12234667788999998776 99999999999988
Q ss_pred c
Q 032655 134 E 134 (136)
Q Consensus 134 ~ 134 (136)
+
T Consensus 391 ~ 391 (531)
T COG3898 391 K 391 (531)
T ss_pred c
Confidence 6
No 273
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.41 E-value=18 Score=28.38 Aligned_cols=43 Identities=12% Similarity=0.033 Sum_probs=30.7
Q ss_pred cCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhh
Q 032655 52 GRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRC 94 (136)
Q Consensus 52 ~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~ 94 (136)
.+++..|+.+.+...- -+..+....-.|.|+..+|+|+||+..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 3457788887766543 335566667788899999999998643
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.28 E-value=3.3 Score=29.69 Aligned_cols=74 Identities=14% Similarity=0.009 Sum_probs=52.8
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChH---HHHHHHhcCcccccCcchHHHHHHHHHHccCh
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYR---RPFHLLNSSKIVLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~---~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~ 88 (136)
.+-++..++|.+|+-..+.+..-.| .|-.--+++.|++..|++. .|-+++... .++..+. +.+.+.+...-
T Consensus 51 ~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~A~evle~~----~d~~a~~-Lv~~Ll~~~~~ 125 (160)
T PF09613_consen 51 GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRYADEVLESG----ADPDARA-LVRALLARADL 125 (160)
T ss_pred HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHHHHHHHhcC----CChHHHH-HHHHHHHhccc
Confidence 4667889999999999999988888 7778899999999999954 445566653 2455543 33444444444
Q ss_pred hhh
Q 032655 89 TSV 91 (136)
Q Consensus 89 ~ea 91 (136)
..|
T Consensus 126 ~~a 128 (160)
T PF09613_consen 126 EPA 128 (160)
T ss_pred cch
Confidence 443
No 275
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=84.28 E-value=2.1 Score=22.10 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=20.0
Q ss_pred HHHHHHH--HHHHHcC-----ChHHHHHHHHHhhc
Q 032655 107 AICFLRG--KAYEALG-----NCAQARLWLVSCDE 134 (136)
Q Consensus 107 ~i~~l~G--~~~~~~~-----~~~~A~~~y~~AL~ 134 (136)
...+.+| .+|.... |.++|++||++|-+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHH
Confidence 3456777 6555554 57999999998854
No 276
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=83.65 E-value=1.9 Score=27.02 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 110 FLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 110 ~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..++.-..+.|++++|+.+|+.|++.
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35688899999999999999999864
No 277
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=83.59 E-value=1.7 Score=27.16 Aligned_cols=27 Identities=11% Similarity=0.117 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+..++.-....|++++|+.+|.+||+.
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346689999999999999999999864
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.47 E-value=8 Score=30.21 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~ 65 (136)
|.-+.-+-+++...+..+.+++++---+++....| +...+..+-..|+++|....|+..+++.
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 34456677788899999999999999999999999 7778888999999999999999888664
No 279
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.04 E-value=3.2 Score=29.94 Aligned_cols=47 Identities=19% Similarity=0.114 Sum_probs=40.0
Q ss_pred CChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCc
Q 032655 20 HLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSK 66 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~ 66 (136)
..-++.+-|+++.+...|+|.....++..+..+|+.++|-...+...
T Consensus 125 ~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34556778999999999999999999999999999999988776643
No 280
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=83.00 E-value=5.6 Score=32.93 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCChhhHHHHHHH--HhccCCChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655 10 RGLVRDCVSKHLYSSAIFFANE--VAALTNDPADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aek--l~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
..+|+.|++.+.+++|+-.-.- .+.++|++-+..++-..++..|+|..|..+...
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~ 163 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATE 163 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHH
Confidence 5789999999999999988765 568889989999999999999999999886643
No 281
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=82.78 E-value=3.7 Score=28.72 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRH 54 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~ 54 (136)
+++-...+..++.++|.-|+-+++.++...| +.+...+.+.+|-..|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 4455666778889999999999999999999 67778888887766654
No 282
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=82.62 E-value=5.9 Score=32.53 Aligned_cols=124 Identities=10% Similarity=0.043 Sum_probs=79.7
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCCC-------hHHHHHHHHHHhccCChHHHHHHHhcCcccc-cCc-----chHHHH
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTND-------PADVYMQAQALFLGRHYRRPFHLLNSSKIVL-RDL-----RFRYLA 78 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~~-------~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~-~~~-----~~~~l~ 78 (136)
+++-.-+++.|+.++.+|--.....-+ -+....++..+-+.-+|++++.+-+...-.+ ..+ ......
T Consensus 49 l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~ 128 (518)
T KOG1941|consen 49 LVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSM 128 (518)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhH
Confidence 344555667777777666544333211 2345556777777778888888765532211 111 345668
Q ss_pred HHHHHHccChhhhhhhhhhh------hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 79 AKCLEELRSGTSVCRCSVML------RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 79 a~c~~~l~~~~ea~~~~~~~------~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|+++.-++.++++++..+.. .++...+-.+|.-+|..|-.+.++++|.-+-.+|+++
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l 191 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL 191 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH
Confidence 88888888888887754431 2233346667888899999999999998888888764
No 283
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=81.56 E-value=1.4 Score=36.81 Aligned_cols=51 Identities=14% Similarity=0.094 Sum_probs=37.9
Q ss_pred HHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655 46 AQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 46 a~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
|.=+|..|+|+.|+-+..=-.-+..++..+=|+|.|++..++|+||.+...
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 566889999999976431111012488999999999999999999977543
No 284
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=81.25 E-value=3.2 Score=25.37 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=22.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 110 FLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 110 ~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..+|.-++..|++++|+.+|+.|++.
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35699999999999999999999864
No 285
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.99 E-value=4.8 Score=28.62 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=43.2
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChH---HHHHHHhc
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYR---RPFHLLNS 64 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~---~A~~~l~~ 64 (136)
.+-++..++|.+|+-..+.+..-.| .|-..-+++.|++..|++. -|.+++..
T Consensus 51 g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~A~~~le~ 106 (153)
T TIGR02561 51 GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVHADEVLAR 106 (153)
T ss_pred HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence 4667889999999999999999887 5778899999999999943 44556655
No 286
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=80.91 E-value=5.8 Score=20.92 Aligned_cols=33 Identities=21% Similarity=0.346 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhcc
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAAL 35 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~ 35 (136)
++.|..|+.....+....+|+.|..+=|++-.+
T Consensus 1 ~~~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l 33 (36)
T PF02151_consen 1 EKLIKELEEKMEEAVENEDFEKAARLRDQIKAL 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 467889999999999999999999998887654
No 287
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.83 E-value=2 Score=30.23 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=36.7
Q ss_pred CChhhHHHHHHHHhc-cCC--ChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655 20 HLYSSAIFFANEVAA-LTN--DPADVYMQAQALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 20 ~~~~~Alf~aekl~~-~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~ 65 (136)
......+-..|.++. .+| ..+-+|++|..+|+.|+|.+++.+++..
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 455667778888886 455 3456999999999999999999988763
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.52 E-value=19 Score=25.89 Aligned_cols=92 Identities=8% Similarity=-0.113 Sum_probs=49.5
Q ss_pred HHHHHHHHhccCChHHHHHHHhcCcc----cccCcchHHHHHHHHHHccChhhhhhhhhh---hhc---ccchHhHHHHH
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSSKI----VLRDLRFRYLAAKCLEELRSGTSVCRCSVM---LRL---LKMISSAICFL 111 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~~l----~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~---~~~---~~~~~a~i~~l 111 (136)
+..+|.-|+..|++..|++.+.+..- ........+..-+..+..++|......... ..+ +.....-+-..
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 44566666666776666665544221 112334455556666666666665432211 011 11122233345
Q ss_pred HHHHHHHcCChHHHHHHHHHhh
Q 032655 112 RGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 112 ~G~~~~~~~~~~~A~~~y~~AL 133 (136)
.|..+...+++.+|.+.|-.++
T Consensus 119 ~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 119 EGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHhchHHHHHHHHHccC
Confidence 5777777788888887776654
No 289
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=80.06 E-value=28 Score=27.58 Aligned_cols=77 Identities=9% Similarity=0.004 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHcc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~ 86 (136)
+..-|..++..|+.. -|+++...+. +..-|++.-.+|..+|+|++-..+-++ .++|--+--+..+|.+.|
T Consensus 180 l~~Ti~~li~~~~~k----~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEK----QAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHHHCCCHH----HHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCCCChHHHHHHHHHCC
Confidence 344556666677765 4677776664 555788888889999998877776554 245666677788888888
Q ss_pred Chhhhhh
Q 032655 87 SGTSVCR 93 (136)
Q Consensus 87 ~~~ea~~ 93 (136)
...+|..
T Consensus 252 ~~~eA~~ 258 (319)
T PF04840_consen 252 NKKEASK 258 (319)
T ss_pred CHHHHHH
Confidence 8888753
No 290
>PF12854 PPR_1: PPR repeat
Probab=79.61 E-value=4.1 Score=20.98 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655 36 TNDPADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 36 ~~~~~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
.|+.-..-.+-.+|-+.|+.++|..+++.
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 35555677788889999999999988864
No 291
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.74 E-value=33 Score=27.15 Aligned_cols=87 Identities=15% Similarity=0.051 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC---C--hHHHHH--HHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN---D--PADVYM--QAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAK 80 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~---~--~~~~~~--la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~ 80 (136)
++.+-+-.+.-|+.+.|-.++|++-..++ + -..... .+..+.-.++|..|.....+... +++++...+..|.
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL 294 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL 294 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence 56667777888999999999997765553 1 122333 35556666778888776655543 7789999999999
Q ss_pred HHHHccChhhhhhhh
Q 032655 81 CLEELRSGTSVCRCS 95 (136)
Q Consensus 81 c~~~l~~~~ea~~~~ 95 (136)
|+.-+|+..+|+...
T Consensus 295 cllYlg~l~DAiK~~ 309 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQL 309 (366)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998643
No 292
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=77.34 E-value=4.2 Score=25.38 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=24.2
Q ss_pred HhHHHHH-HHHHHHHcCChHHHHHHHHHhhcc
Q 032655 105 SSAICFL-RGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 105 ~a~i~~l-~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..++.+. +|.--..-||+++|...|..||+.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3445553 477788999999999999999874
No 293
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=76.79 E-value=17 Score=29.54 Aligned_cols=74 Identities=16% Similarity=0.090 Sum_probs=58.3
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccC----C-ChHHHHHHHHHHhc---cCChHHHHHHHhc-Ccc-cccCcchHHHHHHH
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALT----N-DPADVYMQAQALFL---GRHYRRPFHLLNS-SKI-VLRDLRFRYLAAKC 81 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~----~-~~~~~~~la~~l~~---~g~~~~A~~~l~~-~~l-~~~~~~~~~l~a~c 81 (136)
+.-.+-+...|+.=+-++|.+-.+- + .+.--+++|.++-+ .|+.++|+.++.. ... ...+++...+.|+.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3335667789999999999988772 2 56668899999999 9999999998765 221 34788999999999
Q ss_pred HHHc
Q 032655 82 LEEL 85 (136)
Q Consensus 82 ~~~l 85 (136)
+-.+
T Consensus 227 yKD~ 230 (374)
T PF13281_consen 227 YKDL 230 (374)
T ss_pred HHHH
Confidence 8765
No 294
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=76.74 E-value=3.4 Score=38.07 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.3
Q ss_pred HHHHHHcCChHHHHHHHHHhhc
Q 032655 113 GKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 113 G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+..|+..|+.++|..+|+++..
T Consensus 959 al~Ye~~GklekAl~a~~~~~d 980 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECGD 980 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhcc
Confidence 6788999999999999998863
No 295
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=76.65 E-value=6.1 Score=24.06 Aligned_cols=25 Identities=12% Similarity=0.068 Sum_probs=22.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 111 LRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 111 l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..|.-....|++++|+.+|..|++.
T Consensus 11 ~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 11 KQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4688899999999999999999864
No 296
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=75.94 E-value=21 Score=24.07 Aligned_cols=91 Identities=15% Similarity=0.048 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHH-HHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHH
Q 032655 2 REEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADV-YMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAK 80 (136)
Q Consensus 2 ~~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~-~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~ 80 (136)
-.++...|-++.--.-.+|..++|--.||=+-......+.| ......+...|+|.+|+..=.. ...|..-=+++.
T Consensus 2 ~~~l~~lLAElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~----~~~pdL~p~~AL 77 (116)
T PF09477_consen 2 NRELRRLLAELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALLLPQC----HCYPDLEPWAAL 77 (116)
T ss_dssp -HHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHHHHTT----S--GGGHHHHHH
T ss_pred chHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHhccc----CCCccHHHHHHH
Confidence 34566667777777778899999999999887766655543 3457789999999999442222 256677778999
Q ss_pred HHHHccChhhhhhhhh
Q 032655 81 CLEELRSGTSVCRCSV 96 (136)
Q Consensus 81 c~~~l~~~~ea~~~~~ 96 (136)
|-.++|--++++....
T Consensus 78 ~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 78 CAWKLGLASALESRLT 93 (116)
T ss_dssp HHHHCT-HHHHHHHHH
T ss_pred HHHhhccHHHHHHHHH
Confidence 9999999999876554
No 297
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=75.63 E-value=4.6 Score=22.88 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=21.3
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhcc
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAAL 35 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~ 35 (136)
+..|++.+..|+++.|+.|++.....
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~ 30 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPP 30 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHH
Confidence 55677888899999999999887653
No 298
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.60 E-value=36 Score=29.18 Aligned_cols=127 Identities=16% Similarity=0.079 Sum_probs=71.1
Q ss_pred HHHHHHHHHHH-----HHHcCChhhHHHHHHHHhccCCChHHHHH-----HHHHHhccCChHHHHHHHhcCcccccCcch
Q 032655 5 EIEKLRGLVRD-----CVSKHLYSSAIFFANEVAALTNDPADVYM-----QAQALFLGRHYRRPFHLLNSSKIVLRDLRF 74 (136)
Q Consensus 5 ~~~~lr~~i~~-----~l~~~~~~~Alf~aekl~~~~~~~~~~~~-----la~~l~~~g~~~~A~~~l~~~~l~~~~~~~ 74 (136)
-++.||..|-- .++.|++-.|+-.|+|++..-.-....-. -|.++...++..+|...|.-..+-..+...
T Consensus 503 ~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~ 582 (696)
T KOG2471|consen 503 DLENMRQAIFANMAYVELELGDPIKALSAATKLLQLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKL 582 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCccccc
Confidence 34556665544 46789999999999999987653233333 344555566666665555443221111111
Q ss_pred HHHHHHHHHHccC---hhhhhhhhh---hhhcccc---hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 75 RYLAAKCLEELRS---GTSVCRCSV---MLRLLKM---ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 75 ~~l~a~c~~~l~~---~~ea~~~~~---~~~~~~~---~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
-|. -++.+. ..|+.|-+. +..-..+ ....+++.+|.++.-+|..++|..+...|..+
T Consensus 583 ~~n----~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl 648 (696)
T KOG2471|consen 583 PYN----QEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATL 648 (696)
T ss_pred ccc----hhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 110 011111 122333221 1111111 23346789999999999999999999888764
No 299
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=75.29 E-value=11 Score=23.97 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=30.6
Q ss_pred HHHHcCChhhHHHHHHHHhccCC----Ch------HHHHHHHHHHhccCChHHHHHHHhc
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN----DP------ADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~----~~------~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
.++..++|.+|+---.+.+...+ +. ..+..+|..+...|++.+|+..++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~e 66 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEE 66 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35567778887666666655443 11 2345566677777777777776654
No 300
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=75.13 E-value=6.2 Score=24.21 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 110 FLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 110 ~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...|.-....|++++|+.+|.+|++.
T Consensus 10 ~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 10 VKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35688899999999999999999864
No 301
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=74.56 E-value=17 Score=32.82 Aligned_cols=78 Identities=6% Similarity=0.011 Sum_probs=37.5
Q ss_pred HHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChH
Q 032655 44 MQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCA 123 (136)
Q Consensus 44 ~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~ 123 (136)
..|+-|...|+|++|-++.....+.+... .-|-+.|+|++|-.-+.. .-+.....+.+.-+..=..+.|++.
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~~~~dai-------~my~k~~kw~da~kla~e-~~~~e~t~~~yiakaedldehgkf~ 841 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEADLFKDAI-------DMYGKAGKWEDAFKLAEE-CHGPEATISLYIAKAEDLDEHGKFA 841 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcchhHHHH-------HHHhccccHHHHHHHHHH-hcCchhHHHHHHHhHHhHHhhcchh
Confidence 35666666777777777666554321111 123455666665321110 0011122233334455566666666
Q ss_pred HHHHHH
Q 032655 124 QARLWL 129 (136)
Q Consensus 124 ~A~~~y 129 (136)
+|.+-|
T Consensus 842 eaeqly 847 (1636)
T KOG3616|consen 842 EAEQLY 847 (1636)
T ss_pred hhhhee
Confidence 665544
No 302
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=74.37 E-value=37 Score=31.91 Aligned_cols=134 Identities=13% Similarity=-0.005 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC------ChHH---HHHHHHHHhccCChHHHHHHHhcC----cc-
Q 032655 2 REEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN------DPAD---VYMQAQALFLGRHYRRPFHLLNSS----KI- 67 (136)
Q Consensus 2 ~~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~------~~~~---~~~la~~l~~~g~~~~A~~~l~~~----~l- 67 (136)
..++-+.+|.+-..+=..+.+++|+-|+.|++.++. +|++ .-.++.-.+.+++...|+..+.+. .+
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 367778899999999999999999999999998873 3443 334455556666655555544221 11
Q ss_pred -cccCcc---hHHHHHHHHHHccChhhhhhhhhhh------hcc-cch-HhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 68 -VLRDLR---FRYLAAKCLEELRSGTSVCRCSVML------RLL-KMI-SSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 68 -~~~~~~---~~~l~a~c~~~l~~~~ea~~~~~~~------~~~-~~~-~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+.||. .....+.-+..+++++.|+...... +-+ .+. .+..+..++..+..++.++.|.+..+.++.+
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 123554 3455666777888888887543211 111 222 3334457799999999999999988877654
No 303
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.03 E-value=24 Score=23.68 Aligned_cols=84 Identities=15% Similarity=0.063 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHH-HHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHc
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVY-MQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~-~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l 85 (136)
..|-++.-----+|..++|.-.||=+-......+-|- .-..++...|+|.+|+.+.+.. ..|+.--.+|.|-.++
T Consensus 6 ~lLAE~AL~gTG~HcHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~rl 81 (115)
T TIGR02508 6 VLLAEIALIGTGHHCHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEWRL 81 (115)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHHhh
Confidence 3344444444457889999999997766554445433 3467899999999999988775 3677777899999999
Q ss_pred cChhhhhhh
Q 032655 86 RSGTSVCRC 94 (136)
Q Consensus 86 ~~~~ea~~~ 94 (136)
|-..+....
T Consensus 82 Gl~s~l~~r 90 (115)
T TIGR02508 82 GLGSALESR 90 (115)
T ss_pred ccHHHHHHH
Confidence 998887654
No 304
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=73.39 E-value=7.2 Score=24.14 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHH-HHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 107 AICF-LRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 107 ~i~~-l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++.+ -+|.-....|++++|..+|..+|+.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444 4588889999999999999999864
No 305
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.19 E-value=3.1 Score=33.56 Aligned_cols=86 Identities=8% Similarity=-0.034 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHH-HHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPAD-VYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEE 84 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~-~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~ 84 (136)
...+..-..++..|.+++|+-.+.++..++|.... ....|.++...+++..|++=+..+ .+++....-+=..|.+..-
T Consensus 115 ~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl 194 (377)
T KOG1308|consen 115 NDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL 194 (377)
T ss_pred HHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH
Confidence 35777788899999999999999999999984443 445688999999999998866443 3344445555678889999
Q ss_pred ccChhhhh
Q 032655 85 LRSGTSVC 92 (136)
Q Consensus 85 l~~~~ea~ 92 (136)
+|+|++|-
T Consensus 195 lg~~e~aa 202 (377)
T KOG1308|consen 195 LGNWEEAA 202 (377)
T ss_pred hhchHHHH
Confidence 99999974
No 306
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=71.51 E-value=33 Score=24.27 Aligned_cols=116 Identities=12% Similarity=0.043 Sum_probs=59.0
Q ss_pred HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHH--HHHHHHccChhhh-
Q 032655 16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLA--AKCLEELRSGTSV- 91 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~--a~c~~~l~~~~ea- 91 (136)
.+-.|..+..+-.-.+...-+| +.-+|+.=- ....-+.+-..+.|++.+-...-..|-++. --|+...+...|-
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICN--iiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~v 89 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICN--IIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYV 89 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHH--HHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHH
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeee--cchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHH
Confidence 4455888888888888887776 333444311 112222233345555543211222343333 3577777777763
Q ss_pred ---hhhhhh-----hhc--------ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 92 ---CRCSVM-----LRL--------LKMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 92 ---~~~~~~-----~~~--------~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
++..+. .+| .....+.+.+-+|.+|.++|+..+|-+-.++|=
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 332211 011 123456677778999999999999999988874
No 307
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.47 E-value=64 Score=27.62 Aligned_cols=44 Identities=18% Similarity=0.114 Sum_probs=33.6
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-ChH-HHHHHHHHHhccCC
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPA-DVYMQAQALFLGRH 54 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~-~~~~la~~l~~~g~ 54 (136)
+.-|-++-+++|..|.-.++++..++. +.- -.|..|.|++.++.
T Consensus 308 E~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~ 353 (546)
T KOG3783|consen 308 ERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWE 353 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHH
Confidence 455778888999999999999999887 433 46777788866554
No 308
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=71.21 E-value=12 Score=30.26 Aligned_cols=91 Identities=14% Similarity=0.009 Sum_probs=61.5
Q ss_pred HHHHHHhccCChHHHHHHHhcC-cc---cc-cCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH
Q 032655 44 MQAQALFLGRHYRRPFHLLNSS-KI---VL-RDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA 118 (136)
Q Consensus 44 ~la~~l~~~g~~~~A~~~l~~~-~l---~~-~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~ 118 (136)
--|+=||...+|+.|.....+. .- ++ .+..++...|-|.+-+|+|..|++.-...+--.|...-.++-=.+|+-.
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 3588889999999998866442 11 11 3556888999999999999999864322211112222222333788889
Q ss_pred cCChHHHHHHHHHhhc
Q 032655 119 LGNCAQARLWLVSCDE 134 (136)
Q Consensus 119 ~~~~~~A~~~y~~AL~ 134 (136)
++++.+|+.|-.+.|.
T Consensus 166 Le~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999988877654
No 309
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=70.08 E-value=23 Score=29.40 Aligned_cols=118 Identities=9% Similarity=0.003 Sum_probs=82.5
Q ss_pred HHcCChhhHHHHHHHHhcc-CC-C--------hHHHHHHHHHHhccCC--hHHH-HH-HHhcCcccc---cCcchHHHHH
Q 032655 17 VSKHLYSSAIFFANEVAAL-TN-D--------PADVYMQAQALFLGRH--YRRP-FH-LLNSSKIVL---RDLRFRYLAA 79 (136)
Q Consensus 17 l~~~~~~~Alf~aekl~~~-~~-~--------~~~~~~la~~l~~~g~--~~~A-~~-~l~~~~l~~---~~~~~~~l~a 79 (136)
+++-.++.|.-+++..++- .- + ...+|++..++-..|+ -.++ ++ .++.+.+-. .-.-..+++-
T Consensus 137 ~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LL 216 (493)
T KOG2581|consen 137 IDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLL 216 (493)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHH
Confidence 3466788898888887643 21 2 2348888888888888 3333 33 335544411 1223567888
Q ss_pred HHHHHccChhhhhhhhhh----hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 80 KCLEELRSGTSVCRCSVM----LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 80 ~c~~~l~~~~ea~~~~~~----~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+|+..-+.|++|.+--.+ +.+.++..+.-.|..|+|..-++.+..|.+++.+|+.
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~r 275 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALR 275 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHH
Confidence 999999999999763322 2223446777788999999999999999999999985
No 310
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.94 E-value=8 Score=28.79 Aligned_cols=46 Identities=13% Similarity=0.119 Sum_probs=28.6
Q ss_pred cCChhhHHHHHHHHhccC--C-C----hHHHHHHHHHHhccCChHHHHHHHhc
Q 032655 19 KHLYSSAIFFANEVAALT--N-D----PADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~--~-~----~~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
+.-...|+.+.++++.-. | . ..-+|++|...++.|++++|...+.+
T Consensus 138 ~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~ 190 (214)
T PF09986_consen 138 KRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSR 190 (214)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 334556666666666443 2 1 12367778888888888888776654
No 311
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.93 E-value=11 Score=29.83 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=46.6
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhh
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRC 94 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~ 94 (136)
..+..+.-+.-....|++..|..+++... ..+.+.....+++.|+.+.|+.++|...
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~i 190 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAI 190 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHH
Confidence 34567777888889999999999887653 3567789999999999999999998654
No 312
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.72 E-value=46 Score=28.44 Aligned_cols=122 Identities=8% Similarity=0.049 Sum_probs=81.2
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC----Ch----H-HHH------HHHHHHhccCChHHHHHHHhcCc-ccc--------
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN----DP----A-DVY------MQAQALFLGRHYRRPFHLLNSSK-IVL-------- 69 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~----~~----~-~~~------~la~~l~~~g~~~~A~~~l~~~~-l~~-------- 69 (136)
.+..-.|-++.|..+.|+++..+. .+ - +++ ..+-|-...|+|.+|++-+.... ...
T Consensus 283 ~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Ll 362 (629)
T KOG2300|consen 283 IHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLL 362 (629)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHH
Confidence 344455777788888888776652 11 1 222 24668889999999998664421 111
Q ss_pred --cCcchHHHHHHHHHHccChhhhhhh----------h---------------------h--hhhc-----------ccc
Q 032655 70 --RDLRFRYLAAKCLEELRSGTSVCRC----------S---------------------V--MLRL-----------LKM 103 (136)
Q Consensus 70 --~~~~~~~l~a~c~~~l~~~~ea~~~----------~---------------------~--~~~~-----------~~~ 103 (136)
..+...+++|.=|.--+.|++|+.- . + ..+| +..
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~ 442 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQR 442 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHH
Confidence 2334677888888888888887520 0 0 0011 112
Q ss_pred hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 104 ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 104 ~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..++++|..|...-.++++.||..+..+.|+.
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 47788999999999999999999999998864
No 313
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.88 E-value=49 Score=34.46 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=64.7
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-ChHHHHH----HHHHHhccC-ChHHHHHHHhcCcc----cccCcchHHHHHHHHH
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYM----QAQALFLGR-HYRRPFHLLNSSKI----VLRDLRFRYLAAKCLE 83 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~----la~~l~~~g-~~~~A~~~l~~~~l----~~~~~~~~~l~a~c~~ 83 (136)
..+..+|.++-+++--.+.+++.. +..+.|. -+.||+.+- +...+++++++-++ ......+..+.|.-+.
T Consensus 2744 kvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~ 2823 (3550)
T KOG0889|consen 2744 KVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLE 2823 (3550)
T ss_pred HHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHH
Confidence 334478999999999999999876 6667665 478999988 78899999988776 3356688999999999
Q ss_pred HccChhhhh
Q 032655 84 ELRSGTSVC 92 (136)
Q Consensus 84 ~l~~~~ea~ 92 (136)
++|+++||-
T Consensus 2824 kL~~~eeAn 2832 (3550)
T KOG0889|consen 2824 KLGKFEEAN 2832 (3550)
T ss_pred HhcCcchhH
Confidence 999999985
No 314
>PF13041 PPR_2: PPR repeat family
Probab=68.82 E-value=8.5 Score=21.15 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
+.-.+-.+-.++.+.|++++|..+++.
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~ 28 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKE 28 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 334455566777788888888877755
No 315
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=68.38 E-value=8.6 Score=31.61 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=54.0
Q ss_pred HHHHHHHHcCChhhHHHHHHHH-------hccCC--ChHHHHHHHHHHhccCChHHHHHHHhcCcc--------------
Q 032655 11 GLVRDCVSKHLYSSAIFFANEV-------AALTN--DPADVYMQAQALFLGRHYRRPFHLLNSSKI-------------- 67 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl-------~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-------------- 67 (136)
++.+-+.-.|+|.+|+..-+-+ ++-.| .....|+.|.||.+.++|..|+..+...-+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~ 206 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSY 206 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 4455555579999999886643 33334 344689999999999999999987755221
Q ss_pred -----cccCcchHHHHHHHHHHcc-Chhhh
Q 032655 68 -----VLRDLRFRYLAAKCLEELR-SGTSV 91 (136)
Q Consensus 68 -----~~~~~~~~~l~a~c~~~l~-~~~ea 91 (136)
.+++..+..|+|.|+.-.- +.+|.
T Consensus 207 q~d~i~K~~eqMyaLlAic~~l~p~~lde~ 236 (404)
T PF10255_consen 207 QYDQINKKNEQMYALLAICLSLCPQRLDES 236 (404)
T ss_pred hhhHHHhHHHHHHHHHHHHHHhCCCCCCHH
Confidence 1234456778888876443 34443
No 316
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=68.25 E-value=47 Score=31.86 Aligned_cols=124 Identities=6% Similarity=-0.123 Sum_probs=71.9
Q ss_pred HHHHHHHcCChhhHHHHHHHHh-ccCC-ChHHHHHHHHHHhcc----CChHHHHHHHhcCcccccCcchHHHHHHHHHHc
Q 032655 12 LVRDCVSKHLYSSAIFFANEVA-ALTN-DPADVYMQAQALFLG----RHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~-~~~~-~~~~~~~la~~l~~~----g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l 85 (136)
.+.+.|+....+.|--.|++++ ++++ ..+.-...-.+|... |.=+...+.++++--.......+.-+...|.+-
T Consensus 1464 YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ 1543 (1710)
T KOG1070|consen 1464 YMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKS 1543 (1710)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 4557788888999999999988 7776 322222222222222 221222233333221112234555667788888
Q ss_pred cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+++++|.+.....+......-.+|...|..+.+.+.-+.|-.-.++||+.
T Consensus 1544 ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred hcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 89998877554332222234556777777777777777777777777753
No 317
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=68.01 E-value=9.6 Score=23.63 Aligned_cols=29 Identities=14% Similarity=-0.010 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 107 AICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 107 ~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.....++.-...-|++++|..+|..+|+.
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33446688888889999999999999864
No 318
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=67.47 E-value=16 Score=31.50 Aligned_cols=89 Identities=18% Similarity=0.127 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChH-HHHHHHHHHhcc---CChHHHHH-HHhcCcccccCcchHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPA-DVYMQAQALFLG---RHYRRPFH-LLNSSKIVLRDLRFRYLAAK 80 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~-~~~~la~~l~~~---g~~~~A~~-~l~~~~l~~~~~~~~~l~a~ 80 (136)
|++..+---+.+....+..|+-.+-+.....|... -+-..|.++.+- |+-+-|+. ......+++.+....|-+++
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~ 453 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR 453 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence 33343333444455666777777777777776322 222234344332 22333333 33445567788899999999
Q ss_pred HHHHccChhhhhhh
Q 032655 81 CLEELRSGTSVCRC 94 (136)
Q Consensus 81 c~~~l~~~~ea~~~ 94 (136)
|+.+++++.||++.
T Consensus 454 aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 454 ALNELTRYLEALSC 467 (758)
T ss_pred HHHHHhhHHHhhhh
Confidence 99999999999864
No 319
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.48 E-value=5.7 Score=31.28 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=48.6
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK 66 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~ 66 (136)
...--++-+.+|.+|..+.++....+| +|..+-..|.|+.-.|+...|++.+++..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445667899999999999999999 88899999999999999999999997754
No 320
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.11 E-value=24 Score=28.91 Aligned_cols=121 Identities=12% Similarity=-0.087 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc-----cccCcchHHHHHHHH
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI-----VLRDLRFRYLAAKCL 82 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-----~~~~~~~~~l~a~c~ 82 (136)
++-.++.++++.++-+.=-...+...+ .+..++......+++.+-+..+.++-. ..+-....--+-.||
T Consensus 77 ~li~~~~~FV~~~n~eqlr~as~~f~~------lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~qlT~~H~~l~~~~ 150 (422)
T KOG2582|consen 77 TLIELLNDFVDENNGEQLRLASEIFFP------LCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNGQLTSIHADLLQLC 150 (422)
T ss_pred HHHHHHHHHHHhcChHHHhhHHHHHHH------HHHHHHHHHHhcCCccccchHHHHHHHHhccCccchhhhHHHHHHHH
Confidence 344445555555553332222233222 234444445556666554443322110 112223334455788
Q ss_pred HHccChhhhhhhhhhh---h---c-ccchHhHHHH--HHHHHHHHcCChHHHHHHHHHhhc
Q 032655 83 EELRSGTSVCRCSVML---R---L-LKMISSAICF--LRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 83 ~~l~~~~ea~~~~~~~---~---~-~~~~~a~i~~--l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.+.|+|.-++...+-. . + .++..--.+| .=|-+|-.+.|++.|..||..++.
T Consensus 151 L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 151 LEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred HHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 8999998875322211 1 1 1232333333 449999999999999999998874
No 321
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=65.01 E-value=21 Score=29.97 Aligned_cols=81 Identities=10% Similarity=0.033 Sum_probs=51.3
Q ss_pred cCChHHHHHHHhcCcccc--cCc---c-------hHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc
Q 032655 52 GRHYRRPFHLLNSSKIVL--RDL---R-------FRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL 119 (136)
Q Consensus 52 ~g~~~~A~~~l~~~~l~~--~~~---~-------~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~ 119 (136)
.|+|..|++++.+..... ..+ + .---+..||+.+++-+-|++.+...+.-+|.--.-++-.+-+++.+
T Consensus 196 a~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~L 275 (569)
T PF15015_consen 196 AGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRL 275 (569)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHH
Confidence 355677778775533211 111 1 1223578999999999998866543333332222334559999999
Q ss_pred CChHHHHHHHHHh
Q 032655 120 GNCAQARLWLVSC 132 (136)
Q Consensus 120 ~~~~~A~~~y~~A 132 (136)
+++.+|...+.-|
T Consensus 276 eRy~eAarSamia 288 (569)
T PF15015_consen 276 ERYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887655
No 322
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=63.91 E-value=29 Score=26.67 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
++.-+..-++.++..+|+-.++.-+-..| +..--+.+-+.|...|+|.+|.+-++-
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 44555666778999999999999998889 666678888889999999999886654
No 323
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=63.61 E-value=13 Score=29.64 Aligned_cols=54 Identities=11% Similarity=-0.025 Sum_probs=41.4
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
.....|+..+.|.+|+-...|+++++| +.+++..+-+.|...|+=..|.+...+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 345678888888888888888888888 777888888888888887666654443
No 324
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=63.33 E-value=2.4 Score=35.97 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=0.0
Q ss_pred hHHHHHHHHhccCC-ChHH-HHHHHHHHhccCChHHHHHHHhcCc---c-cccCcchHHHHHHHHHHccChhhhhhhhh-
Q 032655 24 SAIFFANEVAALTN-DPAD-VYMQAQALFLGRHYRRPFHLLNSSK---I-VLRDLRFRYLAAKCLEELRSGTSVCRCSV- 96 (136)
Q Consensus 24 ~Alf~aekl~~~~~-~~~~-~~~la~~l~~~g~~~~A~~~l~~~~---l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~- 96 (136)
+|-++-.++-.-.| .-.+ ...-+..+...|++.+|..++.+.. + .........+.|+.....|++++|.+...
T Consensus 7 aA~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~ 86 (536)
T PF04348_consen 7 AAEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNA 86 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhcc
Confidence 34444444444444 2223 4445789999999999999887755 2 22456778999999999999999987654
Q ss_pred hhhcccc--hHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 97 MLRLLKM--ISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 97 ~~~~~~~--~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
......| .....+-+++.+|+.+|+.-+|+..+...
T Consensus 87 ~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 87 QDLWQLPPEQQARYHQLRAQAYEQQGDPLAAARERIAL 124 (536)
T ss_dssp --------------------------------------
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 2222222 23333447799999999998888876543
No 325
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=63.05 E-value=63 Score=24.35 Aligned_cols=109 Identities=19% Similarity=0.181 Sum_probs=67.0
Q ss_pred ChhhHHHHHHHHhccCC-C-hHHHHHHHHHHhccC-------ChHHHHHHHhcCcccccCcchHHHHHHHHHHc----cC
Q 032655 21 LYSSAIFFANEVAALTN-D-PADVYMQAQALFLGR-------HYRRPFHLLNSSKIVLRDLRFRYLAAKCLEEL----RS 87 (136)
Q Consensus 21 ~~~~Alf~aekl~~~~~-~-~~~~~~la~~l~~~g-------~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l----~~ 87 (136)
++..|..|.+++..... + ....+.+|.++...+ ....|...+.+... ..++.+.+.+|.++..- .+
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~-~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAE-LGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHH-hcCHHHHHHHHHHHHcCCCCCcC
Confidence 78999999999987753 3 345888888887752 22367776655432 34778888888777653 23
Q ss_pred hhhhhhhhhhhhcccchHhHHHHHHHHHHHHc--------------CChHHHHHHHHHh
Q 032655 88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEAL--------------GNCAQARLWLVSC 132 (136)
Q Consensus 88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~--------------~~~~~A~~~y~~A 132 (136)
+++|.....+.-+.-+ ...+++.|..|... .+...|..+|.++
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~ 263 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKA 263 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHH
Confidence 4444433322222112 56677778444333 1667777777765
No 326
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=62.44 E-value=10 Score=27.84 Aligned_cols=35 Identities=11% Similarity=0.033 Sum_probs=27.5
Q ss_pred CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC
Q 032655 20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRH 54 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~ 54 (136)
..+++|+-=.+.++.++| ..+.++.+|.+|.-.+.
T Consensus 49 ~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 478889999999999999 56788889998876654
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.47 E-value=18 Score=20.03 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=14.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHhh
Q 032655 111 LRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 111 l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
-+.++|..+|+.+.|.+...+.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 35666666666666666666554
No 328
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=60.00 E-value=82 Score=24.64 Aligned_cols=61 Identities=15% Similarity=-0.042 Sum_probs=40.0
Q ss_pred cchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 72 LRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 72 ~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
..+..=++..+...|+++.++.....-+..-|....++..+=..|...|+...|+..|++.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3444445555555566665554333222234667778887778899999999999999864
No 329
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=59.87 E-value=73 Score=24.00 Aligned_cols=120 Identities=11% Similarity=0.080 Sum_probs=66.2
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC--ChHHHHHHHHHHh-ccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccCh
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN--DPADVYMQAQALF-LGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~-~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~ 88 (136)
+++-+-..++|++.+.+-.++....| +.+..-++..+|- ..|....++..+....-.....+--... -.+++|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~----~~i~~y 82 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQV----KLIKDY 82 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH----HHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHH----HHHHHH
Confidence 44445557999999999999999987 6777777777773 3455555555554432111111000111 111222
Q ss_pred hhhhh-h-----hh-h-hhc------ccchHhHHHH--HHHHHHHHc----------CChHHHHHHHHHhhcc
Q 032655 89 TSVCR-C-----SV-M-LRL------LKMISSAICF--LRGKAYEAL----------GNCAQARLWLVSCDEF 135 (136)
Q Consensus 89 ~ea~~-~-----~~-~-~~~------~~~~~a~i~~--l~G~~~~~~----------~~~~~A~~~y~~AL~~ 135 (136)
.+=+. + .+ . -+| ..+.++-++| ++|..|+-+ .-.++|..+|++|+++
T Consensus 83 k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 155 (236)
T PF00244_consen 83 KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEI 155 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHH
Confidence 22110 0 00 0 011 1245677877 569888643 2347899999999864
No 330
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=59.73 E-value=38 Score=22.88 Aligned_cols=57 Identities=14% Similarity=-0.002 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccC----CChHH--HHHHHHHHhccCChHHHHHHHhcC
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALT----NDPAD--VYMQAQALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~----~~~~~--~~~la~~l~~~g~~~~A~~~l~~~ 65 (136)
-|.-|.+.+..|+++.|+-|++.....- ++.+- ....-.=+.+.|+..+|+++.++.
T Consensus 4 ~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~ 66 (145)
T PF10607_consen 4 ERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKH 66 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4667788889999999999999865322 22221 111122345578899999988764
No 331
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.36 E-value=14 Score=28.56 Aligned_cols=35 Identities=23% Similarity=0.046 Sum_probs=27.0
Q ss_pred ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 101 LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 101 ~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..|.-+..|+-.|.-.++.|.+..|+..|.+.|++
T Consensus 24 lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 24 LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 34566777788888888888888888888887765
No 332
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=58.94 E-value=35 Score=25.88 Aligned_cols=28 Identities=11% Similarity=-0.058 Sum_probs=21.2
Q ss_pred HHHHHHHHH---------HHcCChHHHHHHHHHhhcc
Q 032655 108 ICFLRGKAY---------EALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 108 i~~l~G~~~---------~~~~~~~~A~~~y~~AL~~ 135 (136)
.+=..|..+ ...++.+.|..++++|+.+
T Consensus 171 l~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 171 LYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Confidence 333668888 3556888999999999875
No 333
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.89 E-value=84 Score=24.42 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=23.7
Q ss_pred cchHhHHHHHH-HHHHHHcCChHHHHHHHHHhh
Q 032655 102 KMISSAICFLR-GKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 102 ~~~~a~i~~l~-G~~~~~~~~~~~A~~~y~~AL 133 (136)
....+.-|+++ ...--.+|.+.+|+.-|.+.-
T Consensus 149 s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 149 SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678887 555567899999999998753
No 334
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.44 E-value=24 Score=31.12 Aligned_cols=77 Identities=6% Similarity=-0.003 Sum_probs=59.8
Q ss_pred HHHcCChhhHHHHHHHHhccCC--ChHHHHH-----HHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccC
Q 032655 16 CVSKHLYSSAIFFANEVAALTN--DPADVYM-----QAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~~--~~~~~~~-----la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~ 87 (136)
..+..+|.+++-|.++-+-.-| +.++.|- ++.||....|.++|.++++.+. .+++++.|....-.+-..-++
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 3445789999999999887777 3334554 4669999999999999996654 366788888888888887788
Q ss_pred hhhhh
Q 032655 88 GTSVC 92 (136)
Q Consensus 88 ~~ea~ 92 (136)
-++|+
T Consensus 444 Se~AL 448 (872)
T KOG4814|consen 444 SEEAL 448 (872)
T ss_pred hHHHH
Confidence 88875
No 335
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=58.12 E-value=12 Score=31.00 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPA 40 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~ 40 (136)
+--||..+-.+..+.+|.+|..+|.|++.+.|+++
T Consensus 300 ~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 300 ILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 34578888888889999999999999999999654
No 336
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=57.95 E-value=84 Score=28.35 Aligned_cols=84 Identities=11% Similarity=-0.004 Sum_probs=59.4
Q ss_pred HHhccCChHHHHHHHhcCcc---cccCcchHHHHHHHHHHccChhhhhhhhh--------h-------hhc-------cc
Q 032655 48 ALFLGRHYRRPFHLLNSSKI---VLRDLRFRYLAAKCLEELRSGTSVCRCSV--------M-------LRL-------LK 102 (136)
Q Consensus 48 ~l~~~g~~~~A~~~l~~~~l---~~~~~~~~~l~a~c~~~l~~~~ea~~~~~--------~-------~~~-------~~ 102 (136)
.....|+|-|.+.+++..+. +..-..+....|.-..++.+|++|.+... + .++ ..
T Consensus 769 lr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~L 848 (1189)
T KOG2041|consen 769 LRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTL 848 (1189)
T ss_pred HHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhc
Confidence 45678999999999988654 22344677888999999999999864221 0 011 23
Q ss_pred chHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655 103 MISSAICFLRGKAYEALGNCAQARLWLVS 131 (136)
Q Consensus 103 ~~~a~i~~l~G~~~~~~~~~~~A~~~y~~ 131 (136)
|..+...=.+|..+-.-|-.++|+++|-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 55666555778888888888888888854
No 337
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.88 E-value=70 Score=24.04 Aligned_cols=60 Identities=8% Similarity=-0.114 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHHccChhhhhhhhhhh----h-cc-cchHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655 72 LRFRYLAAKCLEELRSGTSVCRCSVML----R-LL-KMISSAICFLRGKAYEALGNCAQARLWLVS 131 (136)
Q Consensus 72 ~~~~~l~a~c~~~l~~~~ea~~~~~~~----~-~~-~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~ 131 (136)
..+....|.-++.+|+|++|.+..... . ++ ......+.-.+-.|+..+|+.+..+..--+
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345678889999999999998654321 1 12 245666777888999999998887765444
No 338
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=57.11 E-value=21 Score=31.26 Aligned_cols=75 Identities=12% Similarity=-0.090 Sum_probs=60.9
Q ss_pred cCChhhHHHHHHHHhccCCC--hHHHHHHHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHHHHHHccChhhhhh
Q 032655 19 KHLYSSAIFFANEVAALTND--PADVYMQAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~~--~~~~~~la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
.|+..-|+-.--+++-..|. .-.+..+|+.+...|-...|-.+| +...+..+-|.+.|..|+.+..+++.+.|++
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 37778888888888888883 336889999999999888888866 5555556778899999999999999999865
No 339
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.05 E-value=1.5e+02 Score=26.69 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=53.7
Q ss_pred HHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhh---------hhh----c-ccchHhHH
Q 032655 43 YMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSV---------MLR----L-LKMISSAI 108 (136)
Q Consensus 43 ~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~---------~~~----~-~~~~~a~i 108 (136)
..--.-+...||-++|.++-+.+++ .....+.+....+.+.++|+|-++-+. +.+ + ++..++.-
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fki--pdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFKI--PDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcCC--cchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhh
Confidence 3334455667888888888777775 556677888888888888888654211 000 0 11112221
Q ss_pred H------H-HHHHHHHHcCChHHHHHH
Q 032655 109 C------F-LRGKAYEALGNCAQARLW 128 (136)
Q Consensus 109 ~------~-l~G~~~~~~~~~~~A~~~ 128 (136)
| + =+++.|.+.|++.+|++.
T Consensus 766 Yiprv~~l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 766 YIPRVGGLQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhhccCChHHHHHHHHHhccHHHHHHH
Confidence 1 1 378999999999999875
No 340
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=55.58 E-value=48 Score=28.41 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHccChhhhhhhhhhh---hcc------cchHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655 74 FRYLAAKCLEELRSGTSVCRCSVML---RLL------KMISSAICFLRGKAYEALGNCAQARLWLVS 131 (136)
Q Consensus 74 ~~~l~a~c~~~l~~~~ea~~~~~~~---~~~------~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~ 131 (136)
+.+..+-|.+-.++|.++....... ... ....+-++|+.|..++..|+.+.|...|.+
T Consensus 363 ~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~ 429 (608)
T PF10345_consen 363 LLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQK 429 (608)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 4667778888888888876543311 101 124677889999999999999999999983
No 341
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=54.66 E-value=2e+02 Score=28.02 Aligned_cols=75 Identities=11% Similarity=-0.089 Sum_probs=56.8
Q ss_pred HHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cc--cCcchHHHHHHHHHHccChhhh
Q 032655 17 VSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VL--RDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 17 l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~--~~~~~~~l~a~c~~~l~~~~ea 91 (136)
....+++.|.-+-+..+.-+. .+..|..+|..+++.++-+.|-.+|+++.. .+ .|.++.--.|+--|+.|+-+-+
T Consensus 1541 ~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1541 EKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred HHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhh
Confidence 344677777777777777776 677788899999999987777777766532 34 4888888888888888888775
No 342
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.63 E-value=1e+02 Score=24.17 Aligned_cols=53 Identities=9% Similarity=0.046 Sum_probs=41.1
Q ss_pred HHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhh
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRC 94 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~ 94 (136)
+..++||+...|+|+++++..... ...+.+..++|-.|+++...=+-.||...
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D 286 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKAD 286 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHH
Confidence 566899999999999999866443 22457778999999999887777777543
No 343
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.35 E-value=54 Score=20.81 Aligned_cols=29 Identities=21% Similarity=0.071 Sum_probs=23.8
Q ss_pred cccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655 68 VLRDLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 68 ~~~~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
++.++..++-+|..+...|++++|++...
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll 46 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLL 46 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 56788999999999999999999988653
No 344
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.17 E-value=56 Score=24.43 Aligned_cols=48 Identities=15% Similarity=-0.094 Sum_probs=22.9
Q ss_pred HHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhh
Q 032655 44 MQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 44 ~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
...+++...|+++-|+.+++..+....+++...+.... ...+...||-
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf 160 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAF 160 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHH
Confidence 44555555666666666665544333333333322222 4445555553
No 345
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=54.14 E-value=23 Score=27.26 Aligned_cols=63 Identities=13% Similarity=-0.183 Sum_probs=44.8
Q ss_pred CcccccCcchHHHHHHHHHHccChhhhhhhhhh--hhcccchHhHHHHHHHHHHHHcCChHHHHHHH
Q 032655 65 SKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM--LRLLKMISSAICFLRGKAYEALGNCAQARLWL 129 (136)
Q Consensus 65 ~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~--~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y 129 (136)
..+.|..+...+.+|.-+...|+|+-|.+..+. ++| |.-.-...++|..+--.|+++.|-+-+
T Consensus 92 Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 92 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchHHHhccceeeeecCchHhhHHHH
Confidence 344567889999999999999999999886543 333 222334567777777777777776544
No 346
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.33 E-value=1e+02 Score=29.09 Aligned_cols=97 Identities=16% Similarity=0.009 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHhcCccccc-CcchHHHH------------------------------HHHHHHc
Q 032655 37 NDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLR-DLRFRYLA------------------------------AKCLEEL 85 (136)
Q Consensus 37 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~-~~~~~~l~------------------------------a~c~~~l 85 (136)
.+|+++..--+++.-.+-+.+-+++|++.-+.++ ..+-++|. |..+...
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~ 1061 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIEN 1061 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhh
Confidence 3788888888889999999999999988655331 11111211 2222222
Q ss_pred cChhhhhhhh--------hh--------hhc------ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 86 RSGTSVCRCS--------VM--------LRL------LKMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 86 ~~~~ea~~~~--------~~--------~~~------~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
+-|+||-... .+ .+| +.-....+|-.+|++-...|...+|++.|.+|=
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikad 1131 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKAD 1131 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcC
Confidence 3333331110 00 011 222467789999999999999999999999873
No 347
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=51.29 E-value=32 Score=29.34 Aligned_cols=68 Identities=15% Similarity=0.225 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHc-CChhhHHHHHHHHhccCCChHHHHHHHHHHhcc-CChHHHHHHHhcCcccccCcch
Q 032655 6 IEKLRGLVRDCVSK-HLYSSAIFFANEVAALTNDPADVYMQAQALFLG-RHYRRPFHLLNSSKIVLRDLRF 74 (136)
Q Consensus 6 ~~~lr~~i~~~l~~-~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~-g~~~~A~~~l~~~~l~~~~~~~ 74 (136)
++.|..-+..-+++ ...+.++-+|.|.-+-+|+......-|.-+|++ |+|.+|++.+..+- ....|++
T Consensus 481 v~~L~~~t~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~Ae~~F~~~~~Y~~ALe~i~~al-E~vePG~ 550 (560)
T PF06160_consen 481 VETLEEKTEELIDNATLAEQLIQYANRYRSDNPEVDEALTEAEDLFRNEYDYEKALETIATAL-EKVEPGA 550 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHH-HHhCCCH
Confidence 33333333333332 456778888998888888888999999999999 99999999775542 2345554
No 348
>PRK10941 hypothetical protein; Provisional
Probab=51.03 E-value=65 Score=24.93 Aligned_cols=55 Identities=7% Similarity=-0.147 Sum_probs=30.5
Q ss_pred HHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhhh
Q 032655 45 QAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR 99 (136)
Q Consensus 45 la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~ 99 (136)
+=.+|...+++.+|+.+.+..-. .+.++.=+==.|..+.++|-+..|.+...-++
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 44456666666666666655322 34444444445666666666666655444433
No 349
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=50.68 E-value=88 Score=25.40 Aligned_cols=74 Identities=14% Similarity=0.014 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHH-hcCcccccCcchHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLL-NSSKIVLRDLRFRYLAAK 80 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l-~~~~l~~~~~~~~~l~a~ 80 (136)
+--++..-+.. ..|+-+.|...++.++++.| +|+-+.-+|+-.-..++.-+|=.+. +..-+++.|.++.-+.++
T Consensus 117 ~~Al~~A~~~~-~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 117 ILALKAAGRSR-KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHH-hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 33444444333 45999999999999999999 8888888888777777766665544 333335556655555444
No 350
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=50.68 E-value=24 Score=16.59 Aligned_cols=21 Identities=0% Similarity=0.089 Sum_probs=15.1
Q ss_pred HHHHHHhccCChHHHHHHHhc
Q 032655 44 MQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 44 ~la~~l~~~g~~~~A~~~l~~ 64 (136)
.+-.++...|++++|..+++.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHHHccchHHHHHHHHHH
Confidence 355677788888888877754
No 351
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.23 E-value=15 Score=30.65 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=26.1
Q ss_pred HhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 105 SSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 105 ~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+-....+|.+|+.++..++|+..|+++|.+
T Consensus 21 ~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 21 GAYASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHHHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 3334458899999999999999999999865
No 352
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=50.11 E-value=1.3e+02 Score=27.72 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhh
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
..+|+|-+-..+.-.|+..+|-.+-+..+ +..+-|.+|+-|...|+..+|+.
T Consensus 937 ~A~D~fs~VrI~C~qGk~~kAa~iA~esg----d~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 937 SAKDYFSMVRIKCIQGKTDKAARIAEESG----DKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred HhhhhhhheeeEeeccCchHHHHHHHhcc----cHHHHHHHHHHhhhhHHHHHHHH
Confidence 34677777777777899999988776643 45566999999999999999863
No 353
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=49.88 E-value=63 Score=29.59 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC----ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChh
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN----DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~----~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
+-.+....|+.|+-+-.|...-+| +.|..|..| +.+|++++-.... ..++
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~--------------~~~~ 536 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLG------------ITLLEKASEQGDP--------------RDFT 536 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhh------------HHHHHHHHhcCCh--------------HHHH
Q ss_pred hhhhhhhh-hhcccchHhHHHHHH-HHHHHHcCChHHHHHHHHHhhc
Q 032655 90 SVCRCSVM-LRLLKMISSAICFLR-GKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 90 ea~~~~~~-~~~~~~~~a~i~~l~-G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+|+++.+. .-. .+|+.-||= +.+|+++|.+++=+.||.-||+
T Consensus 537 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 537 QALSEFSYLHGG---VGAPLEYLGKALVYQRLGEYNEEIKSLLLALK 580 (932)
T ss_pred HHHHHHHHhcCC---CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHH
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=49.56 E-value=1.5e+02 Score=24.61 Aligned_cols=57 Identities=9% Similarity=-0.031 Sum_probs=41.8
Q ss_pred HHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhh
Q 032655 31 EVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRC 94 (136)
Q Consensus 31 kl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~ 94 (136)
.++.+..+|+.-|.+|. ..|+.+.|+++.+... ++.++--+|....+.|+++-|++.
T Consensus 313 ~AL~~~~D~~~rFeLAl---~lg~L~~A~~~a~~~~----~~~~W~~Lg~~AL~~g~~~lAe~c 369 (443)
T PF04053_consen 313 LALQFVTDPDHRFELAL---QLGNLDIALEIAKELD----DPEKWKQLGDEALRQGNIELAEEC 369 (443)
T ss_dssp HHHHHSS-HHHHHHHHH---HCT-HHHHHHHCCCCS----THHHHHHHHHHHHHTTBHHHHHHH
T ss_pred HHHhhcCChHHHhHHHH---hcCCHHHHHHHHHhcC----cHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34455567888888874 5688898988877643 567899999999999999888753
No 355
>COG4499 Predicted membrane protein [Function unknown]
Probab=48.10 E-value=1.4e+02 Score=24.71 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhh
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
...+.-|+.=|++.+|.+.+.-+++.....-.....|.+|.++.+.......
T Consensus 249 qeai~~a~~aFL~~nY~qVittLe~ydp~klPksv~Y~LA~SYV~~e~L~~~ 300 (434)
T COG4499 249 QEAIITANTAFLKNNYDQVITTLENYDPEKLPKSVQYILAVSYVNLEDLTTT 300 (434)
T ss_pred HHHHHHHHHHHHhccHHHHhhhcccCChhhCcHHHHHHHHHHHhhccccchH
Confidence 4566778888999999999999998874333447899999999999665544
No 356
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=47.47 E-value=28 Score=16.61 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=14.7
Q ss_pred HHHHHHhccCChHHHHHHHhc
Q 032655 44 MQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 44 ~la~~l~~~g~~~~A~~~l~~ 64 (136)
.+-.++.+.|++++|..+++.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~ 25 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKE 25 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 345567777888888777754
No 357
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=46.70 E-value=57 Score=25.93 Aligned_cols=47 Identities=11% Similarity=-0.061 Sum_probs=39.2
Q ss_pred ChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc
Q 032655 21 LYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI 67 (136)
Q Consensus 21 ~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l 67 (136)
..-.|+.+.|.++..+| ++.--.++...|...|-...|.......++
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~i 245 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDI 245 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcCh
Confidence 34567888888999898 888899999999999999999888877654
No 358
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=46.42 E-value=1.9e+02 Score=24.80 Aligned_cols=73 Identities=15% Similarity=-0.037 Sum_probs=54.0
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCCCh--H-HHHHHHHHHhccCChHHHHHHHhcCcc--cccCcchHHHHHHHHHH
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTNDP--A-DVYMQAQALFLGRHYRRPFHLLNSSKI--VLRDLRFRYLAAKCLEE 84 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~~~--~-~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~~~~~~~l~a~c~~~ 84 (136)
+-.-+-..|..++|+-...-++-++|.. - --+.+..||.-.+.|.++-.+|.++.- .+++....|..|.--++
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 3444456799999999999999988832 2 356789999999999999999998863 23455555666554433
No 359
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=46.05 E-value=37 Score=16.54 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHH
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFAN 30 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~ae 30 (136)
+.|-.+|.+++...-|..+.....
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~ 24 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFA 24 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHH
Confidence 356788999998888877765543
No 360
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=45.87 E-value=1.1e+02 Score=22.00 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=34.8
Q ss_pred HHHHHHH----HHHHHHHHcCChhhHHHHHHHHhccC-CChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655 4 EEIEKLR----GLVRDCVSKHLYSSAIFFANEVAALT-NDPADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 4 ~~~~~lr----~~i~~~l~~~~~~~Alf~aekl~~~~-~~~~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
+|..||+ .+|+--+..|++-+|+.++.+.-..+ .++.-..-.|.-.-...-+......++.
T Consensus 83 DMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 83 DMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555 34455777788888888887753333 2444444445444444445555565544
No 361
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=45.58 E-value=42 Score=33.58 Aligned_cols=85 Identities=21% Similarity=0.129 Sum_probs=54.5
Q ss_pred HHHHHHhccCChHHHHHHHhcCccccc----CcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHH--HH
Q 032655 44 MQAQALFLGRHYRRPFHLLNSSKIVLR----DLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKA--YE 117 (136)
Q Consensus 44 ~la~~l~~~g~~~~A~~~l~~~~l~~~----~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~--~~ 117 (136)
.+|..-++.|.|.||+-+++++...++ .....++.-.+|..+++++.-.-.+.. -.....+.+++ ++
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-------r~a~~sl~~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-------RFADPSLYQQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-------hhcCccHHHHHHHHH
Confidence 689999999999999999988532111 122334444477777776652211110 01111244555 47
Q ss_pred HcCChHHHHHHHHHhhcc
Q 032655 118 ALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 118 ~~~~~~~A~~~y~~AL~~ 135 (136)
..||...|..||..++..
T Consensus 1461 ~~g~~~da~~Cye~~~q~ 1478 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQK 1478 (2382)
T ss_pred hhccHHHHHHHHHHhhcC
Confidence 899999999999998764
No 362
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=44.94 E-value=45 Score=28.49 Aligned_cols=53 Identities=26% Similarity=0.219 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhh
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
.+.+.-+|.--+..|+|.=+.+++++.-. ++.+...++|.|.|+.++|--.|+
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES 505 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhcc
Confidence 44578889999999999999999988655 678889999999999999987775
No 363
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=43.86 E-value=1.4e+02 Score=23.69 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=36.0
Q ss_pred HhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhh
Q 032655 49 LFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 49 l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
+...|+.++|-.+-+.+++ +...++++.-+++.+.++|++-..
T Consensus 187 li~~~~~k~A~kl~k~Fkv--~dkrfw~lki~aLa~~~~w~eL~~ 229 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKEFKV--PDKRFWWLKIKALAENKDWDELEK 229 (319)
T ss_pred HHHCCCHHHHHHHHHHcCC--cHHHHHHHHHHHHHhcCCHHHHHH
Confidence 3557889999999888875 566789999999999999999654
No 364
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=43.74 E-value=26 Score=23.46 Aligned_cols=55 Identities=9% Similarity=0.142 Sum_probs=41.9
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHHhcCc
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLLNSSK 66 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~~ 66 (136)
+|..+.+.+.++..+.|-+.+....+ ++.-.-.++.+|...+.+.+...++++..
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~ 69 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN 69 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc
Confidence 45566667888888889999987765 45556678888999888899999998643
No 365
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=43.39 E-value=38 Score=27.26 Aligned_cols=32 Identities=9% Similarity=-0.009 Sum_probs=28.7
Q ss_pred hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 104 ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 104 ~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..|-..+.+|..-++-|+.-+|+.+|+.|+++
T Consensus 17 kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI 48 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQDGSLYDAINFYRDALQI 48 (366)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcC
Confidence 46667789999999999999999999999986
No 366
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=42.82 E-value=1.2e+02 Score=21.61 Aligned_cols=91 Identities=9% Similarity=0.020 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChH----HHHHHHHHHhccCChHHHHHHHhcCcccc-------cC
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPA----DVYMQAQALFLGRHYRRPFHLLNSSKIVL-------RD 71 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~----~~~~la~~l~~~g~~~~A~~~l~~~~l~~-------~~ 71 (136)
+++-.-+..+..++.+.|+.++|+-+..++..-+.++. -++....+.+..|+|..+...+.+..... ..
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHH
Confidence 56667788999999999999999999999887765443 35566777778889998888886654311 12
Q ss_pred cchHHHHHHHHHHccChhhhhh
Q 032655 72 LRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 72 ~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
.....-.|..+...++|.+|..
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~ 134 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAE 134 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHH
Confidence 2355677888999999999965
No 367
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=42.69 E-value=33 Score=30.43 Aligned_cols=58 Identities=21% Similarity=0.325 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCCC----------hHHHHHHH-HHHhccCChHHHHHHHhcC
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTND----------PADVYMQA-QALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~----------~~~~~~la-~~l~~~g~~~~A~~~l~~~ 65 (136)
-+.++|+-+++.+.|++|.-.||+.=..-|+ ..|-|.-| +++.+.|+-++|.++|++.
T Consensus 775 D~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 775 DLKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred cHHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 4678999999999999999999997665542 12333332 3667778888888877664
No 368
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=42.55 E-value=11 Score=28.57 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.8
Q ss_pred cCChhhHHHHHHHHhccCCCh
Q 032655 19 KHLYSSAIFFANEVAALTNDP 39 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~~~ 39 (136)
.|..++|+|.|++++-++|.|
T Consensus 190 TH~ieEAlflatrLvvlsp~p 210 (259)
T COG4525 190 THDIEEALFLATRLVVLSPGP 210 (259)
T ss_pred eccHHHHHhhhheeEEecCCC
Confidence 489999999999999999843
No 369
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.00 E-value=1.5e+02 Score=22.07 Aligned_cols=113 Identities=14% Similarity=-0.024 Sum_probs=72.3
Q ss_pred CChhhHHHHHHHHhccC-CC--hHHHHHHHHHHhccCChHHHHHHHhcCcccccCcc-----hHHHHHHHHHHccChhhh
Q 032655 20 HLYSSAIFFANEVAALT-ND--PADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLR-----FRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~-~~--~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~-----~~~l~a~c~~~l~~~~ea 91 (136)
+..++|+-.+.-+-.-. ++ .-..+..|..+...|+-..|+..++...-+...|. .+.-.|-.+...|.|++.
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV 151 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV 151 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence 55555555444443322 12 23466678888888888888887766543333332 455566677888888886
Q ss_pred hhhhhh-hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 92 CRCSVM-LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 92 ~~~~~~-~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
....+. ..+++|.-.+.---+|..-.+-|++..|..+|++.
T Consensus 152 ~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 152 SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 554432 33455655555566788888999999999999875
No 370
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=40.15 E-value=1.6e+02 Score=22.67 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=17.0
Q ss_pred HHHHHHHHHHcCChhhHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFA 29 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~a 29 (136)
..+.|+.|+++++|..|+..|
T Consensus 11 ~~~Av~~al~~~~wa~ALlLA 31 (284)
T PF12931_consen 11 REEAVELALDNGLWAHALLLA 31 (284)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHH
Confidence 467788999999999999887
No 371
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=40.05 E-value=63 Score=21.72 Aligned_cols=29 Identities=7% Similarity=0.090 Sum_probs=24.7
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCCChH
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTNDPA 40 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~~~~ 40 (136)
..+.++..|++-.|+-.-+.++...++.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 35678889999999999999999998444
No 372
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=39.97 E-value=1.7e+02 Score=22.33 Aligned_cols=129 Identities=15% Similarity=0.013 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccC-----C-ChHHHHHHHHHHhccCCh--------HHHHHHHhcCccc
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALT-----N-DPADVYMQAQALFLGRHY--------RRPFHLLNSSKIV 68 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~-----~-~~~~~~~la~~l~~~g~~--------~~A~~~l~~~~l~ 68 (136)
++.++-|.+=...-++++++.+|.-.+--++..- | +.+.+-.++.++-..+.- ++|+.-.+...-.
T Consensus 7 ~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~ 86 (260)
T PF04190_consen 7 DEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYK 86 (260)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-T
T ss_pred HHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCC
Confidence 6788889999999999999999999987776542 3 555666777766655432 2444433222222
Q ss_pred ccCcchHHHHHHHHHHccChhhhhhhh-------h---------hhhcccchHhHHHHHHHHH-HHHcCChHHHHHHHHH
Q 032655 69 LRDLRFRYLAAKCLEELRSGTSVCRCS-------V---------MLRLLKMISSAICFLRGKA-YEALGNCAQARLWLVS 131 (136)
Q Consensus 69 ~~~~~~~~l~a~c~~~l~~~~ea~~~~-------~---------~~~~~~~~~a~i~~l~G~~-~~~~~~~~~A~~~y~~ 131 (136)
.-++..+.++|..+++-|++.+|.... . +...+.|.+..++..++.+ |..++|..-|...+..
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 368899999999999999999996311 1 0112456677888888755 5788999999887654
No 373
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=39.80 E-value=1.1e+02 Score=22.90 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhcCccc-------ccCcchHHHHHHHHHHccChhhhhh
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNSSKIV-------LRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~~~l~-------~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
.-.+.+|.-|+..|+|.+|+.+++..... .-...+.-.+..|...+|+.++.+.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 44456777788888888888877664211 1133456667777777777777543
No 374
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=37.88 E-value=1.8e+02 Score=22.18 Aligned_cols=79 Identities=10% Similarity=-0.065 Sum_probs=52.1
Q ss_pred HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhc-cCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhh
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFL-GRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~-~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
...+.+-.+.|-..+.++..-.+ ..+-+...|..=+. +++.+.|..+++.. +..+.+...+..+..-+..+++.+.+
T Consensus 10 ~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~a 89 (280)
T PF05843_consen 10 FMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNA 89 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHH
Confidence 33445557788888888874434 45555566777344 78888898888664 22457778888888999999988877
Q ss_pred hh
Q 032655 92 CR 93 (136)
Q Consensus 92 ~~ 93 (136)
-.
T Consensus 90 R~ 91 (280)
T PF05843_consen 90 RA 91 (280)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 375
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.10 E-value=2.8e+02 Score=24.01 Aligned_cols=117 Identities=9% Similarity=-0.111 Sum_probs=67.4
Q ss_pred HcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655 18 SKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM 97 (136)
Q Consensus 18 ~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~ 97 (136)
..|+.+-|-..++|.....|+...|..+..-=.+-.+.++|-.+.+++-+.......+.-.|+--.+-|...-+-.....
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34788888888899988888888888888777788888899888888765222222333334433334433322211111
Q ss_pred hhc--ccchHhHHHHH-HHHHHHHcCChHHHHHHHHHhhc
Q 032655 98 LRL--LKMISSAICFL-RGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 98 ~~~--~~~~~a~i~~l-~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.++ +.+..+.+.+. -+.--+++.-++.|.--|+-||.
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld 272 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALD 272 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12233333332 24444555666666666666654
No 376
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=36.99 E-value=53 Score=15.71 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=13.0
Q ss_pred HHHHHHhccCChHHHHHHHhc
Q 032655 44 MQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 44 ~la~~l~~~g~~~~A~~~l~~ 64 (136)
.+..++...|+++.|..+++.
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~ 26 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDE 26 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 345566667777777666644
No 377
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=36.98 E-value=22 Score=27.34 Aligned_cols=21 Identities=33% Similarity=0.627 Sum_probs=18.6
Q ss_pred cCChhhHHHHHHHHhccCCCh
Q 032655 19 KHLYSSAIFFANEVAALTNDP 39 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~~~ 39 (136)
.|+.++|++.+||.+-+++.|
T Consensus 188 THdi~EAv~LsdRivvl~~~P 208 (248)
T COG1116 188 THDVDEAVYLADRVVVLSNRP 208 (248)
T ss_pred eCCHHHHHhhhCEEEEecCCC
Confidence 499999999999999998754
No 378
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=36.63 E-value=1.6e+02 Score=21.15 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAA 34 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~ 34 (136)
+-..+..++..+.++.|-.+-+++-.
T Consensus 131 l~N~~~~~i~~~~~~~a~~~l~~l~~ 156 (220)
T TIGR01716 131 LLNIAVLLIEKNEFSYAQYFLEKLEK 156 (220)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444555555555555555433
No 379
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=36.55 E-value=70 Score=21.58 Aligned_cols=33 Identities=15% Similarity=-0.081 Sum_probs=24.8
Q ss_pred ccchHhHHHH-HHHHHHHHcCChHHHHHHHHHhh
Q 032655 101 LKMISSAICF-LRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 101 ~~~~~a~i~~-l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
++-...+.+| --+..++..|++++|.+-|+.++
T Consensus 93 ~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 93 GIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp TTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 4545555566 44999999999999999998875
No 380
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=36.41 E-value=1.4e+02 Score=22.91 Aligned_cols=47 Identities=11% Similarity=-0.121 Sum_probs=38.2
Q ss_pred cCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655 19 KHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~ 65 (136)
.++.+.|.-..|+++..+| +++-|..+..-+...|+...|-.++++.
T Consensus 49 ~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~ 96 (280)
T PF05843_consen 49 NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERA 96 (280)
T ss_dssp CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 3667779999999999999 7777888889999999999999988764
No 381
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=36.17 E-value=40 Score=27.42 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=24.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhccC
Q 032655 111 LRGKAYEALGNCAQARLWLVSCDEFT 136 (136)
Q Consensus 111 l~G~~~~~~~~~~~A~~~y~~AL~~~ 136 (136)
.+|..+.++|+.++|...|.+|+.++
T Consensus 370 ~RadlL~rLgr~~eAr~aydrAi~La 395 (415)
T COG4941 370 ARADLLARLGRVEEARAAYDRAIALA 395 (415)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHhc
Confidence 88999999999999999999998764
No 382
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.94 E-value=2.3e+02 Score=22.82 Aligned_cols=115 Identities=11% Similarity=0.088 Sum_probs=68.4
Q ss_pred CChhhHHHHHHHHhccCCCh-------HHHHHHHHHHhccCChHHHHHHHhc-------CcccccCcchHHHHHHHHHHc
Q 032655 20 HLYSSAIFFANEVAALTNDP-------ADVYMQAQALFLGRHYRRPFHLLNS-------SKIVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~~~-------~~~~~la~~l~~~g~~~~A~~~l~~-------~~l~~~~~~~~~l~a~c~~~l 85 (136)
..+++-+|.++++..-..-. +--..++..+|.+|+|..|+.++.. ..-.+.-.....+-.+.+.+.
T Consensus 99 dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~i 178 (421)
T COG5159 99 DSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEI 178 (421)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHH
Confidence 45566677777666544311 1123467789999999999886633 111112234555666677766
Q ss_pred cChhhhhhh--hhhh--h---cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 86 RSGTSVCRC--SVML--R---LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 86 ~~~~ea~~~--~~~~--~---~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.+...+-.. +... . -+....+.+.++-|..+..--++.-|-.+|-+|++
T Consensus 179 rnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 179 RNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 666554211 1111 1 12224566666778888888888888888888875
No 383
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.26 E-value=2.3e+02 Score=25.00 Aligned_cols=70 Identities=17% Similarity=0.142 Sum_probs=43.8
Q ss_pred HHHHHcCChhhHHHHHHHHhccCCChHHHHHHHH---HHhccCChHHHHHHH-hcCc--c---------cc-cCcchHHH
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQ---ALFLGRHYRRPFHLL-NSSK--I---------VL-RDLRFRYL 77 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~---~l~~~g~~~~A~~~l-~~~~--l---------~~-~~~~~~~l 77 (136)
-++.+.++|..-..+-+-...+-|.|++|-.+-. .|...|+..+|+... +.-+ . ++ -+..|.|+
T Consensus 213 ~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~av~~aiRl~~~~~i~e~~~a~~Dp~~kKQ~~Yi 292 (881)
T COG5110 213 LDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRAVVGAIRLQKSKEIIEYVRAIEDPDYKKQCLYI 292 (881)
T ss_pred hhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHHHhcccHHHHHHHHHhccChHHHHHHHHH
Confidence 3455566666666666666666678888776643 466778888887643 2211 0 11 24578999
Q ss_pred HHHHHH
Q 032655 78 AAKCLE 83 (136)
Q Consensus 78 ~a~c~~ 83 (136)
+|+|-.
T Consensus 293 LArq~~ 298 (881)
T COG5110 293 LARQNL 298 (881)
T ss_pred HHhccC
Confidence 998844
No 384
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=34.95 E-value=2.9e+02 Score=23.67 Aligned_cols=130 Identities=11% Similarity=-0.051 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC--ChHH-----HHHHHHHHhccCChHHHHHHHhcCcc-------c
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN--DPAD-----VYMQAQALFLGRHYRRPFHLLNSSKI-------V 68 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~--~~~~-----~~~la~~l~~~g~~~~A~~~l~~~~l-------~ 68 (136)
++..-++|=..--.-+..+++.|...-+|...++. +-.| -++++.+++..|... |...+++.-- .
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 44455555555555577889999999999887773 3333 467788888888866 8777765211 1
Q ss_pred ccCcchHHHHHHHHHHccChhhhhhhhhh--hhc---ccchHhH-HHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 69 LRDLRFRYLAAKCLEELRSGTSVCRCSVM--LRL---LKMISSA-ICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 69 ~~~~~~~~l~a~c~~~l~~~~ea~~~~~~--~~~---~~~~~a~-i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
.-...|+++...-+...+++..|.+.... ... +.+..-. ..+..|.+....+..+.+++-..++.
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 11224566645445455778777664322 111 2222222 22355888888888888887777664
No 385
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=33.74 E-value=71 Score=20.41 Aligned_cols=29 Identities=14% Similarity=0.358 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHcCChh-hHHHHHHHHhcc
Q 032655 3 EEEIEKLRGLVRDCVSKHLYS-SAIFFANEVAAL 35 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~-~Alf~aekl~~~ 35 (136)
++.++.||. .|..|.|. ++-..|++++..
T Consensus 65 ~~kV~~ik~----aI~~G~Y~vd~~~iA~~ml~~ 94 (95)
T TIGR03824 65 AEKVAEIKA----AIANGSYKVDAEKIADKLLDF 94 (95)
T ss_pred HHHHHHHHH----HHHcCCCCCCHHHHHHHHHhc
Confidence 444555554 45589999 999999998753
No 386
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=33.03 E-value=1.3e+02 Score=19.34 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=15.5
Q ss_pred HHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHc
Q 032655 48 ALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 48 ~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l 85 (136)
-|+..|++.+|.+.+...+....+.......-.|+.+-
T Consensus 11 ey~~~~D~~ea~~~l~~L~~~~~~~~vv~~~i~~~le~ 48 (113)
T smart00544 11 EYLSSGDTDEAVHCLLELKLPEQHHEVVKVLLTCALEE 48 (113)
T ss_pred HHHHcCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 34444455555444444332223333333333333333
No 387
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.97 E-value=3e+02 Score=23.12 Aligned_cols=86 Identities=7% Similarity=-0.000 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCCCh---HH-HHHHHHHHhccCChHHHHHHHhcCccc---------ccCcc
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTNDP---AD-VYMQAQALFLGRHYRRPFHLLNSSKIV---------LRDLR 73 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~---~~-~~~la~~l~~~g~~~~A~~~l~~~~l~---------~~~~~ 73 (136)
--++.+-+|+.+.|+.++|+..--|+-.-+-+. -+ +..+-.+-.-.|+|....++..++... ...+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 346778889999999999998877754444322 22 333444555568888888777554322 13556
Q ss_pred hHHHHHHHHHHccChhhhh
Q 032655 74 FRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 74 ~~~l~a~c~~~l~~~~ea~ 92 (136)
.....|.+.+.+++|++|.
T Consensus 231 l~C~agLa~L~lkkyk~aa 249 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAA 249 (466)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999985
No 388
>PF06287 DUF1039: Protein of unknown function (DUF1039); InterPro: IPR010437 This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic Escherichia coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterised as part of the apparatus or as an effector protein.
Probab=32.77 E-value=1.2e+02 Score=18.47 Aligned_cols=47 Identities=26% Similarity=0.214 Sum_probs=30.2
Q ss_pred CChhhHHHHHHHHhccCCChHH-HHHHHHHHhccCChHHHHHHHhcCc
Q 032655 20 HLYSSAIFFANEVAALTNDPAD-VYMQAQALFLGRHYRRPFHLLNSSK 66 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~~~~~-~~~la~~l~~~g~~~~A~~~l~~~~ 66 (136)
+.++.|--.-.-+=.+-||+++ ...-+.++|-.|+..+|+..|+...
T Consensus 7 gL~~ea~aIL~alP~Li~D~~~r~~c~alllfGL~~~~~Al~~L~~~~ 54 (66)
T PF06287_consen 7 GLLKEARAILNALPQLIPDEEDRAVCEALLLFGLGEQAAALQLLADSD 54 (66)
T ss_pred ccHHHHHHHHHhchhhcCCHhHHHHHHHHHHHHcCChHHHHHHHhCCC
Confidence 3444443332222233346665 6677899999999999999998743
No 389
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=32.74 E-value=47 Score=26.99 Aligned_cols=62 Identities=16% Similarity=0.037 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 73 RFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 73 ~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.++...+.|-++.+.+..|...........+..+..++-+|..+..+.+.++|.++++.|..
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~ 337 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQ 337 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhc
Confidence 34555788888888888876433221112344667789999999999999999999998864
No 390
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=32.71 E-value=2e+02 Score=21.48 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=33.6
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhc-Ccc---c-ccCcchHHHHHHHHHHccChhhh
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNS-SKI---V-LRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~-~~l---~-~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
+|+--+.+|. +|...+..+|+.++-+ ..+ . ..+++...-+|-.+.++|++++|
T Consensus 140 t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 140 TAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4455555554 4446677777775533 222 2 45677777788888888888876
No 391
>PF15469 Sec5: Exocyst complex component Sec5
Probab=32.69 E-value=1.8e+02 Score=20.56 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHcCC--hhhHHHHHHHHhccCC
Q 032655 3 EEEIEKLRGLVRDCVSKHL--YSSAIFFANEVAALTN 37 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~--~~~Alf~aekl~~~~~ 37 (136)
|++++.+|..++.-+.... .++..-..++++.+.|
T Consensus 134 e~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~L~~ 170 (182)
T PF15469_consen 134 EKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLLELNV 170 (182)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC
Confidence 7888899999998888765 7788888899999987
No 392
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=32.09 E-value=77 Score=21.47 Aligned_cols=28 Identities=4% Similarity=-0.063 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~ 65 (136)
+.+-+.-...++..+|++..|+.+++..
T Consensus 51 t~~lL~AIv~sf~~n~~i~~al~~vd~f 78 (126)
T PF12921_consen 51 TSRLLIAIVHSFGYNGDIFSALKLVDFF 78 (126)
T ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4556888899999999999999988663
No 393
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.08 E-value=83 Score=28.94 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPAD 41 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~ 41 (136)
.|--||..+--+..+.++++|-++|.+++.+.|.|+-
T Consensus 1083 ~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~ 1119 (1202)
T KOG0292|consen 1083 RILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPV 1119 (1202)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChH
Confidence 3556888999999999999999999999999996553
No 394
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=31.33 E-value=4.2e+02 Score=24.36 Aligned_cols=125 Identities=14% Similarity=0.032 Sum_probs=80.5
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHh----cc------------CC------ChHHHHHHHHHHhccCChHHHHHHHhcCcc
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVA----AL------------TN------DPADVYMQAQALFLGRHYRRPFHLLNSSKI 67 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~----~~------------~~------~~~~~~~la~~l~~~g~~~~A~~~l~~~~l 67 (136)
...|+|.+..++|+.|.-.-++.- .- =| +|.-+...|+.+....+|.+|-.++.....
T Consensus 364 ~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~ 443 (894)
T COG2909 364 SEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEH 443 (894)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 567888888888888887777761 10 02 255688899999999999999888865332
Q ss_pred cc----------cCcchHHHHHHHHHHccChhhhhhhhhhhhc---cc-chHhHH-HHHHHHHHHHcCChHHHHHHHHHh
Q 032655 68 VL----------RDLRFRYLAAKCLEELRSGTSVCRCSVMLRL---LK-MISSAI-CFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 68 ~~----------~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~---~~-~~~a~i-~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
.. ......-+.|......|+.++|++-....++ +. +..-.+ ....|.+..=.|.+.+|...-+++
T Consensus 444 ~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 444 FLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQA 523 (894)
T ss_pred HhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHH
Confidence 11 1225667888888889999998764332211 11 112222 235577777777777776666655
Q ss_pred hc
Q 032655 133 DE 134 (136)
Q Consensus 133 L~ 134 (136)
.+
T Consensus 524 ~~ 525 (894)
T COG2909 524 EQ 525 (894)
T ss_pred HH
Confidence 44
No 395
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=31.28 E-value=4.7e+02 Score=25.02 Aligned_cols=45 Identities=16% Similarity=0.009 Sum_probs=27.6
Q ss_pred HHhccCChHHHHHHHhcCcccccCcch--HHHHHHHHHHccChhhhhh
Q 032655 48 ALFLGRHYRRPFHLLNSSKIVLRDLRF--RYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 48 ~l~~~g~~~~A~~~l~~~~l~~~~~~~--~~l~a~c~~~l~~~~ea~~ 93 (136)
|+-.+|+|.+|+.+..+... .....+ ...++--+.+.+++.||.+
T Consensus 974 a~~~~~dWr~~l~~a~ql~~-~~de~~~~a~~L~s~L~e~~kh~eAa~ 1020 (1265)
T KOG1920|consen 974 AYKECGDWREALSLAAQLSE-GKDELVILAEELVSRLVEQRKHYEAAK 1020 (1265)
T ss_pred HHHHhccHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHHcccchhHHH
Confidence 56667778877776654332 122222 2566666778888888753
No 396
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=31.20 E-value=90 Score=16.61 Aligned_cols=34 Identities=6% Similarity=0.012 Sum_probs=22.6
Q ss_pred HHHHhccCCChHHHHHHHHHHhccCChHHHHHHH
Q 032655 29 ANEVAALTNDPADVYMQAQALFLGRHYRRPFHLL 62 (136)
Q Consensus 29 aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l 62 (136)
.+.+..++|+.+.-.........+|+.+.|+..|
T Consensus 6 v~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~L 39 (43)
T smart00546 6 LHDLKDMFPNLDEEVIKAVLEANNGNVEATINNL 39 (43)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567788896554444444444889999998754
No 397
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.12 E-value=60 Score=33.88 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=29.2
Q ss_pred chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 103 MISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 103 ~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+..|..+.++|....++|.+++|=..|..|+.+
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi 2841 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQI 2841 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHH
Confidence 357777779999999999999999999999865
No 398
>PRK11619 lytic murein transglycosylase; Provisional
Probab=30.51 E-value=2.3e+02 Score=24.78 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=30.8
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
++..+..++|+.+..|.+++-.... .+.-.|++|-++...|+..+|-..+++
T Consensus 319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~ 371 (644)
T PRK11619 319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQ 371 (644)
T ss_pred HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455666677666666666422222 334567777776667777777666554
No 399
>KOG2518 consensus 5'-3' exonuclease [Replication, recombination and repair]
Probab=30.05 E-value=69 Score=27.41 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhccC
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCDEFT 136 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~~ 136 (136)
.+-.|.-+.+-|+..+|.++|++|+.+|
T Consensus 99 n~~~a~~ll~~G~~~~A~~~fqr~VdIT 126 (556)
T KOG2518|consen 99 NLDAAEQLLAEGKESNARECFQRCVDIT 126 (556)
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHhccCc
Confidence 4566888889999999999999999886
No 400
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.43 E-value=78 Score=28.83 Aligned_cols=61 Identities=18% Similarity=0.297 Sum_probs=45.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCCC-hHH----HHHH-HHHHhccCChHHHHHHHhcCcccc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTND-PAD----VYMQ-AQALFLGRHYRRPFHLLNSSKIVL 69 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~~-~~~----~~~l-a~~l~~~g~~~~A~~~l~~~~l~~ 69 (136)
++..|++.+..-.|+.|+-.++-...-+|. ... -.+. |.-+|.+|+|++|+..+.+...++
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~d~ 376 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEIDP 376 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhccCh
Confidence 677788888889999999999887775551 111 2222 677999999999999987765433
No 401
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.09 E-value=3.1e+02 Score=22.16 Aligned_cols=60 Identities=7% Similarity=0.016 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhcc-CCChH--HHHHHHHH--HhccCChHHHHHHHhcCc
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAAL-TNDPA--DVYMQAQA--LFLGRHYRRPFHLLNSSK 66 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~-~~~~~--~~~~la~~--l~~~g~~~~A~~~l~~~~ 66 (136)
++-...+....+.++|..|.-+.+.+..- +++.+ -+..++.+ .-..-+|++|.+.++...
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45556677888999999999999999874 55444 23334333 445677889999988753
No 402
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=29.07 E-value=65 Score=21.21 Aligned_cols=25 Identities=12% Similarity=-0.041 Sum_probs=20.2
Q ss_pred HHHHHHHHhccCChHHHHHHHhcCc
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSSK 66 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~~ 66 (136)
..-++..|+..|++.+|++++++..
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 5667888999999999999887643
No 403
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=28.06 E-value=3e+02 Score=21.65 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655 4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
+++..++.+. .+++|.+.+-.+|+.++.+| =.+--++.++++-..| +..+...++.
T Consensus 101 d~~~~~~~~~----~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~ 157 (301)
T TIGR03362 101 DRVADYQELL----AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRD 157 (301)
T ss_pred HHHHHHHHHH----hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 4455555554 57889999999999999998 5677888899999999 5666665543
No 404
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=27.65 E-value=5.1e+02 Score=24.81 Aligned_cols=127 Identities=9% Similarity=-0.131 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCChhhHHH------HHH-HHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccc---------cC
Q 032655 9 LRGLVRDCVSKHLYSSAIF------FAN-EVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVL---------RD 71 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf------~ae-kl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~---------~~ 71 (136)
..+.-+.++..+.+.+|.- +.+ +.-.+.| ...-.-.++..+++.|++..|+..-.++-+.. ..
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3444555666667765554 443 4445556 34446678999999999999988766643311 12
Q ss_pred cchHHHHHHHHHHccChhhhhhhh-----hhhh--c-ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 72 LRFRYLAAKCLEELRSGTSVCRCS-----VMLR--L-LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 72 ~~~~~l~a~c~~~l~~~~ea~~~~-----~~~~--~-~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
....-.++.-.+..++-..|+.-. .+.+ . ..|..+.+.-.++.++..++..+.|+.+...|++.
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 233445555566666444443211 1111 1 35778888889999999999999999999999864
No 405
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=27.62 E-value=2.4e+02 Score=24.11 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=42.7
Q ss_pred ChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHH
Q 032655 21 LYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 21 ~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~ 83 (136)
..+.++-.+.|...-+|....-+.-|.-+|+.++|.+|++.+..+- ....|++.-=.-..|.
T Consensus 501 ~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF~~~~Y~~al~~~~~al-E~vePG~~~ri~~~y~ 562 (569)
T PRK04778 501 LTEQLIQYANRYRSDNEEVAEALNEAERLFREYDYKAALEIIATAL-EKVEPGVTKRIEDSYE 562 (569)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHH-HhhCCcHHHHHHHHHH
Confidence 3455666677777777888888999999999999999988774431 2356665443333333
No 406
>COG1895 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=27.38 E-value=1e+02 Score=21.20 Aligned_cols=38 Identities=11% Similarity=-0.082 Sum_probs=27.4
Q ss_pred hHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhh
Q 032655 55 YRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 55 ~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
|+.|-.+|=..++ ..+|.+....++.|..+.|..++-.
T Consensus 42 Fh~akALLL~Kg~~~kkHsGvi~mf~~~fv~~g~~~~~~ 80 (129)
T COG1895 42 FHAAKALLLTKGIDPKKHSGVIKMFNLEFVEEGDLDKEL 80 (129)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHHHHhchHHHHH
Confidence 4555444433334 3489999999999999999998864
No 407
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=26.49 E-value=2.9e+02 Score=21.00 Aligned_cols=62 Identities=16% Similarity=0.083 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-----ChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-----DPADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-----~~~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
+++.+-.-..++-+...|+++.|.....++....+ .|.-.+..+..+...|+..+|+..|+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~ 209 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE 209 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555666667777888888888877777653 345566678888888888888887765
No 408
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=26.19 E-value=3.3e+02 Score=21.45 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=31.7
Q ss_pred HHHHHHHHhccCChHHHHHHHhcC-cc---cccCcchHHHHHHHHHHccChhhhhh
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSS-KI---VLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~-~l---~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
..--|..++..|....|+..|+.. .. ......-+++.++.|.+.|+++-|..
T Consensus 216 ~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ 271 (301)
T TIGR03362 216 LREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQ 271 (301)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 334466677777777777777642 11 11233456677777777777777643
No 409
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.17 E-value=1.1e+02 Score=27.12 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=11.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHh
Q 032655 111 LRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 111 l~G~~~~~~~~~~~A~~~y~~A 132 (136)
.+..||.++...++|++.|.+|
T Consensus 399 ~l~~CYL~L~QLD~A~E~~~EA 420 (872)
T KOG4814|consen 399 ALQVCYLKLEQLDNAVEVYQEA 420 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 4444555555555555555544
No 410
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=26.15 E-value=1.6e+02 Score=17.90 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHH
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVY 43 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~ 43 (136)
++.++-|..++..++. ..-+++..+++..---.|++.|+-
T Consensus 26 ~sale~ltdi~~~yl~-~l~~~~~~~a~~agR~~~~~~Dv~ 65 (77)
T smart00576 26 ESALETLTDILQSYIQ-ELGRTAHSYAELAGRTEPNLGDVV 65 (77)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCCCHHHHH
Confidence 5677888888888887 667788888876666667887775
No 411
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=26.15 E-value=82 Score=14.54 Aligned_cols=26 Identities=8% Similarity=-0.289 Sum_probs=16.5
Q ss_pred ChhhHHHHHHHHhccCC-ChHHHHHHH
Q 032655 21 LYSSAIFFANEVAALTN-DPADVYMQA 46 (136)
Q Consensus 21 ~~~~Alf~aekl~~~~~-~~~~~~~la 46 (136)
.++.|-...++++...| +++-|..++
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 45667777788887777 444444443
No 412
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=26.15 E-value=2.2e+02 Score=25.54 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=41.3
Q ss_pred HHHHcCChhhHHHHHHHHhccCCChHHHHHHHH---HHhccCChHHHHHHH-------------hcCcccccCcchHHHH
Q 032655 15 DCVSKHLYSSAIFFANEVAALTNDPADVYMQAQ---ALFLGRHYRRPFHLL-------------NSSKIVLRDLRFRYLA 78 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~---~l~~~g~~~~A~~~l-------------~~~~l~~~~~~~~~l~ 78 (136)
++++.++|..-..+-.-...+-|.|+|+..+-. .|..-++|-+|+... ++..-......|.|++
T Consensus 212 ~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai~l~~~~~v~~vf~s~~D~~~kKQ~~ymL 291 (878)
T KOG2005|consen 212 DYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAIRLDDMKEVKEVFTSCTDPLLKKQMAYML 291 (878)
T ss_pred HHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344555555555555555566688888666533 455667777776633 1111011244678888
Q ss_pred HHHH--HHccC
Q 032655 79 AKCL--EELRS 87 (136)
Q Consensus 79 a~c~--~~l~~ 87 (136)
|+|- +++++
T Consensus 292 aR~~i~~e~~~ 302 (878)
T KOG2005|consen 292 ARHGIYFELSE 302 (878)
T ss_pred HhcCCceecCc
Confidence 8874 44443
No 413
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=25.72 E-value=1.2e+02 Score=24.90 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=38.0
Q ss_pred HHHHHHhccCChHHHHHHHhcCcccc----------cCcchHHHHHHHHHHccChhhhh
Q 032655 44 MQAQALFLGRHYRRPFHLLNSSKIVL----------RDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 44 ~la~~l~~~g~~~~A~~~l~~~~l~~----------~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
++-+.|++.|+++-+-.+++..+..+ .-..++|.+|+|++-..++.||-
T Consensus 182 lL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~ 240 (413)
T COG5600 182 LLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAF 240 (413)
T ss_pred HHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHH
Confidence 45568999999999988887765311 12257999999999999999983
No 414
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=25.33 E-value=1.5e+02 Score=17.30 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
+++++.+|.+..+++++- ..-.-|...|++++|.++++.
T Consensus 10 ~~~~~~lR~~RHD~~NhL-----------------------qvI~gllqlg~~~~a~eYi~~ 48 (62)
T PF14689_consen 10 EELIDSLRAQRHDFLNHL-----------------------QVIYGLLQLGKYEEAKEYIKE 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHH-----------------------HHHHHHHHCCCHHHHHHHHHH
Confidence 566677777776665531 222335666777777777755
No 415
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.20 E-value=3e+02 Score=23.73 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=41.8
Q ss_pred HHHHHHHHHHccChhhhhhhhhhhhc-------ccchHhHHHHHHHHHHHHcCC-hHHHHHHHHHhh
Q 032655 75 RYLAAKCLEELRSGTSVCRCSVMLRL-------LKMISSAICFLRGKAYEALGN-CAQARLWLVSCD 133 (136)
Q Consensus 75 ~~l~a~c~~~l~~~~ea~~~~~~~~~-------~~~~~a~i~~l~G~~~~~~~~-~~~A~~~y~~AL 133 (136)
.+|+|.|+-.+|+...+.....+.++ +.-.-...+|=+|..|..+|- ..+|.++..+|=
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr 518 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAR 518 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence 56889999999988887654332211 111244567888999988888 889998888873
No 416
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=25.13 E-value=1.7e+02 Score=24.35 Aligned_cols=51 Identities=10% Similarity=-0.108 Sum_probs=38.7
Q ss_pred HHHHHHHHhccCChHHHHHHHhcCcc--cccCcchHHHHHHHHHHccChhhhh
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSSKI--VLRDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~~l--~~~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
.+.+..-++..|.++.++.+|++... .-.+.-..+++-..+++.|+|+.|.
T Consensus 106 ~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~ 158 (429)
T PF10037_consen 106 HHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAA 158 (429)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHH
Confidence 45566677888889999999977432 2345556688999999999999985
No 417
>PF12976 DUF3860: Domain of Unknown Function with PDB structure (DUF3860); InterPro: IPR024619 This protein family includes hypothetical protein (JCVI_PEP_1096688149193) whose crystal structure has been solved PDB:2OD5. The hypothetical protein is from an environmental metagenome (unidentified marine microbe).
Probab=25.09 E-value=1.9e+02 Score=18.30 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHh-ccCC--ChHHH
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVA-ALTN--DPADV 42 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~-~~~~--~~~~~ 42 (136)
++||.+|+.+++.- ..+-+-..+-+. .+.| -|+++
T Consensus 4 ~~LR~~Ir~~L~ER-~~NT~EI~~~~~~~M~~~s~Pe~~ 41 (92)
T PF12976_consen 4 QNLRDLIRNYLSER-PRNTIEISAWLASQMDPNSCPEDV 41 (92)
T ss_pred hHHHHHHHHHHhcC-cccHHHHHHHHHhccCCCCCHHHH
Confidence 57999999999866 555555555543 6666 46654
No 418
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.87 E-value=1.8e+02 Score=26.53 Aligned_cols=22 Identities=14% Similarity=0.059 Sum_probs=15.2
Q ss_pred HHHHHHcCChHHHHHHHHHhhc
Q 032655 113 GKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 113 G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
|.=+-+.|++++|+.+|.+++.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcc
Confidence 5555666777777777777664
No 419
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=24.81 E-value=1e+02 Score=20.93 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=21.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 111 LRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 111 l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
-+|-.+-..|+.++|+.+|-.||..
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V 92 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKV 92 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5699999999999999999999864
No 420
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=24.53 E-value=3.7e+02 Score=21.57 Aligned_cols=121 Identities=6% Similarity=-0.141 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cc--cCc-----------
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VL--RDL----------- 72 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~--~~~----------- 72 (136)
+.......++..++++.=+ .++..+| ..+.+..++.++.+.|++..|-.+++++.. .. .|+
T Consensus 12 ~~q~~F~~~v~~~Dp~~l~----~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~ 87 (360)
T PF04910_consen 12 EAQEQFYAAVQSHDPNALI----NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTS 87 (360)
T ss_pred HHHHHHHHHHHccCHHHHH----HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 4444555555666554332 3457788 888999999999999999999998887421 00 111
Q ss_pred ----------------chHHHHHHHHHHccChhhhhhhhh--hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 73 ----------------RFRYLAAKCLEELRSGTSVCRCSV--MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 73 ----------------~~~~l~a~c~~~l~~~~ea~~~~~--~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
.+.+-..+.+.+-|-|..|.+..- ..+|+..+--++.+.+-..--+.+.++.=++.+...
T Consensus 88 g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 88 GNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred CccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 133444455555555555555332 234433233444455666666667777666666543
No 421
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=24.53 E-value=25 Score=29.88 Aligned_cols=82 Identities=15% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChhhHHHHHHHHh--ccCC--ChHHHHHHHHHHhccCChHHHHHHHhcCcc--cc--cCcchHHHHHHHH
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVA--ALTN--DPADVYMQAQALFLGRHYRRPFHLLNSSKI--VL--RDLRFRYLAAKCL 82 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~--~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~--~~~~~~~l~a~c~ 82 (136)
..++-++..++++.|....+.+- .++| ..+-..+.|.+....|++.+|+..|..... .+ ......-+.|..+
T Consensus 29 ~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~ 108 (536)
T PF04348_consen 29 LAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAY 108 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHH
Confidence 45666788899999999988877 4555 344577789999999999999999874322 11 3344556778889
Q ss_pred HHccChhhhh
Q 032655 83 EELRSGTSVC 92 (136)
Q Consensus 83 ~~l~~~~ea~ 92 (136)
...|++-+|.
T Consensus 109 ~~~~~~l~Aa 118 (536)
T PF04348_consen 109 EQQGDPLAAA 118 (536)
T ss_dssp ----------
T ss_pred HhcCCHHHHH
Confidence 9999998875
No 422
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=24.17 E-value=1.6e+02 Score=23.98 Aligned_cols=33 Identities=15% Similarity=0.048 Sum_probs=24.2
Q ss_pred chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 103 MISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 103 ~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|....+..-.|...+.-.+.-+|-+||.+||.+
T Consensus 147 P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 147 PTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 334455566688888888888888888888764
No 423
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.14 E-value=5.2e+02 Score=23.06 Aligned_cols=72 Identities=11% Similarity=0.031 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccCh
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~ 88 (136)
-|..|-++++..-+ -++++.++|+|+--|-++ .+.|+++.|..+..... ++.=+--+|..-...+++
T Consensus 616 ~rt~va~Fle~~g~------~e~AL~~s~D~d~rFela---l~lgrl~iA~~la~e~~----s~~Kw~~Lg~~al~~~~l 682 (794)
T KOG0276|consen 616 IRTKVAHFLESQGM------KEQALELSTDPDQRFELA---LKLGRLDIAFDLAVEAN----SEVKWRQLGDAALSAGEL 682 (794)
T ss_pred hhhhHHhHhhhccc------hHhhhhcCCChhhhhhhh---hhcCcHHHHHHHHHhhc----chHHHHHHHHHHhhcccc
Confidence 34455555544332 245678888888888776 45688999998776543 223334455555556666
Q ss_pred hhhhh
Q 032655 89 TSVCR 93 (136)
Q Consensus 89 ~ea~~ 93 (136)
.-|.+
T Consensus 683 ~lA~E 687 (794)
T KOG0276|consen 683 PLASE 687 (794)
T ss_pred hhHHH
Confidence 55544
No 424
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=23.23 E-value=94 Score=21.44 Aligned_cols=26 Identities=8% Similarity=-0.103 Sum_probs=20.8
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccC
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALT 36 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~ 36 (136)
.++-..++-|+|+.|+-||+.++...
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcC
Confidence 34445677799999999999999876
No 425
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=22.53 E-value=1.5e+02 Score=20.15 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=18.3
Q ss_pred HHHHHHcCChhhHHHHHHHHhcc
Q 032655 13 VRDCVSKHLYSSAIFFANEVAAL 35 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~ 35 (136)
....++.|.|+.|.|+|..++.+
T Consensus 20 A~~~le~G~y~~a~f~aqQAvel 42 (132)
T COG2250 20 AKRDLELGDYDLACFHAQQAVEL 42 (132)
T ss_pred HHHHHHCCChHHHHHHHHHHHHH
Confidence 34455889999999999988764
No 426
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=22.51 E-value=2.4e+02 Score=19.18 Aligned_cols=58 Identities=14% Similarity=-0.066 Sum_probs=32.4
Q ss_pred cccCcchHHHHHHHHHHccChhhhhhhhh-hhhcccchHhHHHH-HHHHHHHHcCChHHHHHHHHH
Q 032655 68 VLRDLRFRYLAAKCLEELRSGTSVCRCSV-MLRLLKMISSAICF-LRGKAYEALGNCAQARLWLVS 131 (136)
Q Consensus 68 ~~~~~~~~~l~a~c~~~l~~~~ea~~~~~-~~~~~~~~~a~i~~-l~G~~~~~~~~~~~A~~~y~~ 131 (136)
+++....+..++..+ .+..+... +...++-..-+.+| --+..++..|++++|.+.|+.
T Consensus 65 D~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 65 DPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 445555555566554 23333221 12224444555555 348888888888888887763
No 427
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.43 E-value=1.2e+02 Score=25.70 Aligned_cols=26 Identities=23% Similarity=0.106 Sum_probs=22.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.+|.|.+.-.+|++.+|.++++.|-.
T Consensus 270 ~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 270 ELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 44669999999999999999998753
No 428
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=22.15 E-value=1.5e+02 Score=19.28 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=26.0
Q ss_pred HHHHHHHHhccCChHHHHHHHhcCcccccCcc-hHHHHHHHHHHcc
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSSKIVLRDLR-FRYLAAKCLEELR 86 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~-~~~l~a~c~~~l~ 86 (136)
...-|..-+..|+|.+|.+.+.+..-....|. .+.+.|++-...|
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 45556677777888888777755432233333 3334566655554
No 429
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=22.12 E-value=1.3e+02 Score=22.89 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHH-----cCChhhHHHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHH
Q 032655 4 EEIEKLRGLVRDCVS-----KHLYSSAIFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLL 62 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~-----~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l 62 (136)
+.+.++-+++...-. .--.+.|+-|+ +- .-.| +|+--..+|..++..|+|..|...+
T Consensus 50 ~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~-~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 50 ESIARLIELISLFPPEEPERKKFIKAAIKWS-KF-GSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HT-SS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-cc-CCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 344555555543321 12245788888 22 2223 7788888999999999999997654
No 430
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=21.99 E-value=1.1e+02 Score=15.92 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHhccCChH---HHHHHHhc
Q 032655 39 PADVYMQAQALFLGRHYR---RPFHLLNS 64 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~---~A~~~l~~ 64 (136)
|+.-|.+|+|+-++.... +.+.+|+.
T Consensus 1 ~qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~ 29 (35)
T PF14852_consen 1 PQTQFNYAWGLVKSNNREDQQEGIALLEE 29 (35)
T ss_dssp -HHHHHHHHHHHHSSSHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 456778888888887753 45555543
No 431
>COG1476 Predicted transcriptional regulators [Transcription]
Probab=21.84 E-value=1.2e+02 Score=18.49 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=28.1
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHH
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQA 46 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la 46 (136)
...+++|.|.--+..|=++...++ ..+|+|++.
T Consensus 31 i~~iEkgky~Psl~La~kia~~f~~~iedIF~~~ 64 (68)
T COG1476 31 IIAIEKGKYNPSLELALKIARVFGKTIEDIFQLE 64 (68)
T ss_pred HHHHHcCCCCchHHHHHHHHHHhCCCHHHHHhhh
Confidence 346788999999999999998888 888999875
No 432
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.80 E-value=5.8e+02 Score=22.77 Aligned_cols=19 Identities=11% Similarity=-0.223 Sum_probs=12.5
Q ss_pred HHHHHHHHHHccChhhhhh
Q 032655 75 RYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 75 ~~l~a~c~~~l~~~~ea~~ 93 (136)
.+++=.|++.+|+++++++
T Consensus 724 ~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 724 NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred cchHHHHHHHcCCHHHHHH
Confidence 3455567777777777765
No 433
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.70 E-value=5.4e+02 Score=22.35 Aligned_cols=87 Identities=9% Similarity=-0.115 Sum_probs=42.1
Q ss_pred HhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH--HHcCChHHH
Q 032655 49 LFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY--EALGNCAQA 125 (136)
Q Consensus 49 l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~--~~~~~~~~A 125 (136)
=...++++|+-.+.++... .|.+-..+--+|---..||+.+-|-....+.+++.....+..+.+.-|= -..|-+++|
T Consensus 447 ElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka 526 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA 526 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH
Confidence 3455667777666665432 3333344445555555566665554333333332222222222222211 245666777
Q ss_pred HHHHHHhhcc
Q 032655 126 RLWLVSCDEF 135 (136)
Q Consensus 126 ~~~y~~AL~~ 135 (136)
..-|++-|..
T Consensus 527 R~LYerlL~r 536 (677)
T KOG1915|consen 527 RALYERLLDR 536 (677)
T ss_pred HHHHHHHHHh
Confidence 7777766654
No 434
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=21.70 E-value=1.7e+02 Score=24.09 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccC
Q 032655 2 REEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALT 36 (136)
Q Consensus 2 ~~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~ 36 (136)
++.++.++|.=|-+.|..|+.++|.+=+|.++-..
T Consensus 13 k~a~~kq~RrdIA~lL~sg~~~~A~~RvE~li~ee 47 (388)
T KOG2027|consen 13 KEALAKQLRRDIADLLKSGQDERARIRVEHLIREE 47 (388)
T ss_pred HHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 47889999999999999999999999999988643
No 435
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=21.54 E-value=1.4e+02 Score=21.54 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN 37 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~ 37 (136)
+.+|+..+. ++....+.|+|||+++.-|
T Consensus 57 L~aL~~~~e----~~~l~q~afLAErLlAQi~ 84 (175)
T COG3923 57 LTALKQAVE----QDRLPQVAFLAERLLAQIE 84 (175)
T ss_pred HHHHHHHHh----ccchHHHHHHHHHHHHHHH
Confidence 445555554 6666789999999998643
No 436
>PRK10316 hypothetical protein; Provisional
Probab=21.33 E-value=2.9e+02 Score=20.76 Aligned_cols=24 Identities=21% Similarity=0.094 Sum_probs=16.2
Q ss_pred HHHHHHHcCChhhHHHHHHHHhcc
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAAL 35 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~ 35 (136)
+-+..|-+|+++.|.-....+-..
T Consensus 60 ~AR~Alf~G~~~~Ak~ll~~A~~~ 83 (209)
T PRK10316 60 VARLALFHGDPEKAKELTNQASAL 83 (209)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 456677788888887766554433
No 437
>PRK15356 type III secretion system protein SsaH; Provisional
Probab=21.00 E-value=2.2e+02 Score=17.71 Aligned_cols=31 Identities=13% Similarity=-0.042 Sum_probs=24.9
Q ss_pred CChHH-HHHHHHHHhccCChHHHHHHHhcCcc
Q 032655 37 NDPAD-VYMQAQALFLGRHYRRPFHLLNSSKI 67 (136)
Q Consensus 37 ~~~~~-~~~la~~l~~~g~~~~A~~~l~~~~l 67 (136)
|++++ ....+..+|-.|+..+|+.+|.....
T Consensus 25 pD~~~r~vC~alllfGLne~~~A~~~La~~~~ 56 (75)
T PRK15356 25 PDKKLQLVCLALLLAGLNEPLKAAKILSDIDL 56 (75)
T ss_pred CCHHHHHHHHHHHHHhcCcHHHHHHHHhcCCc
Confidence 46554 67788899999999999999987653
No 438
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=20.87 E-value=2.5e+02 Score=25.25 Aligned_cols=26 Identities=4% Similarity=-0.058 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 107 AICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 107 ~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
.+++--|+-....+++++|-+.|.+|
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 34444455555566666666555544
No 439
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=20.71 E-value=1.4e+02 Score=22.00 Aligned_cols=29 Identities=7% Similarity=-0.104 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 106 SAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
...+..+|.++...|+.=.|+.+|.+||-
T Consensus 16 G~p~nQLAvl~~~~~~~l~avy~y~Rsl~ 44 (278)
T PF10373_consen 16 GNPYNQLAVLASYQGDDLDAVYYYIRSLA 44 (278)
T ss_dssp SHHHHHHHHHHHHTT-HHHHHHHHHHHHS
T ss_pred CCcccchhhhhccccchHHHHHHHHHHHh
Confidence 33456889999999999999999999874
No 440
>PRK13456 DNA protection protein DPS; Provisional
Probab=20.48 E-value=2.7e+02 Score=20.47 Aligned_cols=28 Identities=7% Similarity=-0.145 Sum_probs=22.6
Q ss_pred hhHHHHHHHHhccC--C--ChHHHHHHHHHHh
Q 032655 23 SSAIFFANEVAALT--N--DPADVYMQAQALF 50 (136)
Q Consensus 23 ~~Alf~aekl~~~~--~--~~~~~~~la~~l~ 50 (136)
.=|..+|+|+..+- | +|.+|+-+..|-+
T Consensus 67 ~HA~~lAeRI~qLGG~P~~~p~~~~~ls~~~~ 98 (186)
T PRK13456 67 NHFEALVPRIYELGGKLPRDIREFHDISACPD 98 (186)
T ss_pred HHHHHHHHHHHHhCCCCCCChHHHhhhhcCcc
Confidence 34788999999887 3 7888999888866
No 441
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=20.40 E-value=1.3e+02 Score=18.16 Aligned_cols=27 Identities=15% Similarity=-0.112 Sum_probs=22.4
Q ss_pred HHHHHhccCC--ChHHHHHHHHHHhccCC
Q 032655 28 FANEVAALTN--DPADVYMQAQALFLGRH 54 (136)
Q Consensus 28 ~aekl~~~~~--~~~~~~~la~~l~~~g~ 54 (136)
.-|+++..+| +++++..+...+-.+|=
T Consensus 17 ~ier~~~~~~~~~~e~~~~f~~~L~~~Gv 45 (69)
T TIGR03595 17 KIERWVAKTPFNNDENLRRFARKLKKLGV 45 (69)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCH
Confidence 4578888887 88899999999988884
No 442
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=20.08 E-value=2.1e+02 Score=17.29 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=11.3
Q ss_pred HHHHHHHHHHcCChhhHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFA 29 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~a 29 (136)
+.......+++|+|++|.-.|
T Consensus 9 ~~~~F~~l~~~g~y~eAA~~A 29 (66)
T PF13838_consen 9 YVQQFNELFSQGQYEEAAKVA 29 (66)
T ss_dssp HHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 334445555677777766444
Done!