Query 032655
Match_columns 136
No_of_seqs 100 out of 345
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 06:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gyz_A Chaperone protein IPGC; 99.6 3E-15 1E-19 104.3 7.5 124 6-135 8-133 (151)
2 3vtx_A MAMA; tetratricopeptide 99.6 5.8E-14 2E-18 97.7 13.3 127 9-135 8-170 (184)
3 2pl2_A Hypothetical conserved 99.6 3E-14 1E-18 103.2 12.0 126 9-134 8-146 (217)
4 3vtx_A MAMA; tetratricopeptide 99.6 5.6E-14 1.9E-18 97.9 12.3 98 38-135 4-136 (184)
5 4gco_A Protein STI-1; structur 99.5 1.7E-14 5.8E-19 96.9 7.5 105 31-135 4-110 (126)
6 4i17_A Hypothetical protein; T 99.5 2.3E-13 7.7E-18 97.9 13.0 129 7-135 8-146 (228)
7 4ga2_A E3 SUMO-protein ligase 99.5 1.8E-14 6.2E-19 99.1 5.2 118 18-135 9-129 (150)
8 2pl2_A Hypothetical conserved 99.5 2.2E-13 7.6E-18 98.5 10.8 124 11-135 44-180 (217)
9 3urz_A Uncharacterized protein 99.5 2.3E-13 7.8E-18 97.9 10.8 129 7-135 5-186 (208)
10 1hh8_A P67PHOX, NCF-2, neutrop 99.5 8E-13 2.7E-17 93.6 12.9 128 6-135 6-150 (213)
11 4gyw_A UDP-N-acetylglucosamine 99.5 4.1E-13 1.4E-17 113.9 13.3 128 8-135 11-140 (723)
12 2fo7_A Synthetic consensus TPR 99.5 8.9E-13 3.1E-17 85.2 11.8 127 9-135 4-132 (136)
13 3u4t_A TPR repeat-containing p 99.5 4.9E-13 1.7E-17 97.5 11.3 127 9-135 6-137 (272)
14 3as5_A MAMA; tetratricopeptide 99.5 1.3E-12 4.5E-17 89.1 12.7 126 9-134 11-172 (186)
15 2vgx_A Chaperone SYCD; alterna 99.5 1.5E-13 5.2E-18 94.5 7.7 108 28-135 9-118 (148)
16 3as5_A MAMA; tetratricopeptide 99.4 1.3E-12 4.4E-17 89.1 11.2 95 40-134 9-138 (186)
17 2q7f_A YRRB protein; TPR, prot 99.4 1.9E-12 6.6E-17 92.5 12.3 124 12-135 63-222 (243)
18 3uq3_A Heat shock protein STI1 99.4 1.9E-12 6.4E-17 93.0 12.1 130 6-135 79-236 (258)
19 2vq2_A PILW, putative fimbrial 99.4 4.1E-12 1.4E-16 89.4 13.7 127 8-134 10-141 (225)
20 3qky_A Outer membrane assembly 99.4 2.8E-12 9.5E-17 94.2 13.0 129 7-135 16-177 (261)
21 2xpi_A Anaphase-promoting comp 99.4 3.3E-12 1.1E-16 102.8 14.4 131 5-135 83-229 (597)
22 2ho1_A Type 4 fimbrial biogene 99.4 4.7E-12 1.6E-16 91.4 13.8 129 6-134 37-169 (252)
23 2xcb_A PCRH, regulatory protei 99.4 3.3E-13 1.1E-17 91.3 6.4 105 30-134 8-114 (142)
24 3hym_B Cell division cycle pro 99.4 3.9E-12 1.3E-16 94.4 12.7 120 16-135 169-299 (330)
25 2e2e_A Formate-dependent nitri 99.4 7.8E-13 2.7E-17 91.7 8.3 119 17-135 21-144 (177)
26 1a17_A Serine/threonine protei 99.4 4.4E-12 1.5E-16 85.8 11.8 131 4-134 11-145 (166)
27 4i17_A Hypothetical protein; T 99.4 2.6E-12 8.8E-17 92.3 11.2 124 12-135 48-209 (228)
28 2h6f_A Protein farnesyltransfe 99.4 2.2E-12 7.6E-17 101.9 11.5 120 15-134 106-228 (382)
29 3uq3_A Heat shock protein STI1 99.4 1.2E-11 4.2E-16 88.7 13.7 130 5-134 4-167 (258)
30 3ffl_A Anaphase-promoting comp 99.4 1.6E-12 5.3E-17 92.2 8.1 105 9-117 23-166 (167)
31 2q7f_A YRRB protein; TPR, prot 99.4 1E-11 3.4E-16 88.7 12.5 86 9-94 26-113 (243)
32 3hym_B Cell division cycle pro 99.4 1.2E-11 4.3E-16 91.6 13.2 121 14-134 64-221 (330)
33 3upv_A Heat shock protein STI1 99.4 2.2E-12 7.6E-17 84.9 8.1 113 7-119 5-125 (126)
34 2pzi_A Probable serine/threoni 99.4 3.6E-12 1.2E-16 106.9 11.1 125 10-135 437-563 (681)
35 2vq2_A PILW, putative fimbrial 99.3 2.3E-11 7.9E-16 85.5 12.9 126 9-134 45-175 (225)
36 3ieg_A DNAJ homolog subfamily 99.3 2.2E-11 7.7E-16 90.9 13.5 130 6-135 3-149 (359)
37 1xnf_A Lipoprotein NLPI; TPR, 99.3 4.1E-11 1.4E-15 87.0 14.3 130 6-135 43-244 (275)
38 2ho1_A Type 4 fimbrial biogene 99.3 3.9E-11 1.3E-15 86.5 13.9 124 10-133 75-202 (252)
39 1w3b_A UDP-N-acetylglucosamine 99.3 1.9E-11 6.6E-16 93.8 12.8 120 16-135 247-368 (388)
40 4gco_A Protein STI-1; structur 99.3 1.2E-11 4E-16 82.8 9.9 111 5-115 12-124 (126)
41 3cv0_A Peroxisome targeting si 99.3 1.4E-11 4.7E-16 91.3 11.3 127 9-135 175-315 (327)
42 3qou_A Protein YBBN; thioredox 99.3 4.5E-11 1.5E-15 90.0 14.1 126 9-134 120-283 (287)
43 4eqf_A PEX5-related protein; a 99.3 4.2E-12 1.4E-16 96.7 8.5 124 12-135 183-310 (365)
44 2lni_A Stress-induced-phosphop 99.3 3.7E-11 1.3E-15 78.2 11.9 116 6-121 16-133 (133)
45 4abn_A Tetratricopeptide repea 99.3 1.1E-11 3.9E-16 99.6 11.1 123 13-135 144-287 (474)
46 4gyw_A UDP-N-acetylglucosamine 99.3 1E-11 3.5E-16 105.4 11.3 123 13-135 50-174 (723)
47 4gcn_A Protein STI-1; structur 99.3 1.1E-11 3.9E-16 82.8 8.9 95 41-135 10-112 (127)
48 1fch_A Peroxisomal targeting s 99.3 1.7E-11 6E-16 92.7 10.9 126 9-134 220-358 (368)
49 3q49_B STIP1 homology and U bo 99.3 1.3E-11 4.4E-16 81.6 8.8 97 38-134 8-105 (137)
50 2yhc_A BAMD, UPF0169 lipoprote 99.3 4.3E-11 1.5E-15 86.6 12.3 128 8-135 6-176 (225)
51 2vyi_A SGTA protein; chaperone 99.3 5.2E-11 1.8E-15 76.8 11.4 118 5-122 11-130 (131)
52 4eqf_A PEX5-related protein; a 99.3 3.3E-11 1.1E-15 91.7 12.0 127 9-135 68-242 (365)
53 4ga2_A E3 SUMO-protein ligase 99.3 2.1E-11 7E-16 83.6 9.8 110 12-121 37-149 (150)
54 3cv0_A Peroxisome targeting si 99.3 1.9E-11 6.5E-16 90.5 10.3 120 16-135 148-269 (327)
55 2vsy_A XCC0866; transferase, g 99.3 3.8E-11 1.3E-15 97.6 12.9 127 9-135 26-157 (568)
56 2h6f_A Protein farnesyltransfe 99.3 1.6E-11 5.6E-16 96.9 10.2 120 16-135 141-269 (382)
57 3qky_A Outer membrane assembly 99.3 2.6E-11 8.8E-16 89.0 10.5 127 9-135 55-224 (261)
58 3edt_B KLC 2, kinesin light ch 99.3 3.4E-11 1.2E-15 87.1 11.1 131 5-135 42-198 (283)
59 3u3w_A Transcriptional activat 99.3 4.1E-11 1.4E-15 89.8 11.8 124 12-135 121-266 (293)
60 1w3b_A UDP-N-acetylglucosamine 99.3 5.2E-11 1.8E-15 91.4 12.5 78 16-93 179-258 (388)
61 1xnf_A Lipoprotein NLPI; TPR, 99.3 8.9E-12 3E-16 90.6 7.7 118 18-135 17-140 (275)
62 3sz7_A HSC70 cochaperone (SGT) 99.3 1.7E-11 5.7E-16 84.3 8.5 90 7-96 12-103 (164)
63 1fch_A Peroxisomal targeting s 99.3 2.1E-11 7.1E-16 92.2 9.7 121 15-135 190-314 (368)
64 3ieg_A DNAJ homolog subfamily 99.3 8.5E-11 2.9E-15 87.7 12.9 125 10-134 41-216 (359)
65 3upv_A Heat shock protein STI1 99.3 1.2E-10 4.1E-15 76.4 11.9 98 38-135 3-101 (126)
66 3ro3_A PINS homolog, G-protein 99.3 6E-11 2E-15 78.8 10.5 131 5-135 8-158 (164)
67 2r5s_A Uncharacterized protein 99.3 4.9E-11 1.7E-15 83.1 10.2 127 8-134 8-172 (176)
68 3u3w_A Transcriptional activat 99.3 2.8E-10 9.7E-15 85.2 15.0 132 4-135 73-225 (293)
69 2xpi_A Anaphase-promoting comp 99.3 7.8E-11 2.7E-15 94.7 12.7 124 12-135 447-579 (597)
70 4abn_A Tetratricopeptide repea 99.2 1.5E-11 5.3E-16 98.8 8.3 122 13-135 109-250 (474)
71 3edt_B KLC 2, kinesin light ch 99.2 1.2E-10 4E-15 84.2 12.2 130 6-135 85-281 (283)
72 2vsy_A XCC0866; transferase, g 99.2 2E-11 6.9E-16 99.3 8.8 117 19-135 2-120 (568)
73 1p5q_A FKBP52, FK506-binding p 99.2 7.7E-11 2.6E-15 90.8 11.6 129 6-134 147-293 (336)
74 2hr2_A Hypothetical protein; a 99.2 2.9E-11 1E-15 85.3 8.4 63 73-135 58-131 (159)
75 3fp2_A TPR repeat-containing p 99.2 6.7E-11 2.3E-15 93.6 11.3 127 8-134 245-406 (537)
76 3fp2_A TPR repeat-containing p 99.2 1.4E-10 4.7E-15 91.8 12.9 93 40-133 244-337 (537)
77 3u4t_A TPR repeat-containing p 99.2 1.5E-10 5E-15 84.2 12.0 85 11-95 42-131 (272)
78 2fbn_A 70 kDa peptidylprolyl i 99.2 7.6E-11 2.6E-15 83.3 9.9 127 5-131 37-182 (198)
79 2kck_A TPR repeat; tetratricop 99.2 3.3E-11 1.1E-15 76.0 7.3 100 36-135 2-106 (112)
80 2xev_A YBGF; tetratricopeptide 99.2 4.7E-11 1.6E-15 78.0 8.2 83 14-96 10-100 (129)
81 3nf1_A KLC 1, kinesin light ch 99.2 1.1E-10 3.9E-15 85.7 10.9 130 6-135 111-307 (311)
82 2qfc_A PLCR protein; TPR, HTH, 99.2 2.8E-10 9.5E-15 85.2 13.2 123 13-135 122-266 (293)
83 2xcb_A PCRH, regulatory protei 99.2 1.4E-10 4.6E-15 78.3 10.3 93 5-97 17-111 (142)
84 2y4t_A DNAJ homolog subfamily 99.2 3.2E-10 1.1E-14 88.0 13.7 130 6-135 26-172 (450)
85 3mkr_A Coatomer subunit epsilo 99.2 4E-10 1.4E-14 85.2 13.8 126 6-135 65-229 (291)
86 1hxi_A PEX5, peroxisome target 99.2 2.3E-11 7.9E-16 80.7 6.0 96 40-135 18-114 (121)
87 2y4t_A DNAJ homolog subfamily 99.2 2.6E-10 8.9E-15 88.5 12.7 127 9-135 180-358 (450)
88 2gw1_A Mitochondrial precursor 99.2 1.1E-10 3.9E-15 91.5 10.6 125 11-135 309-478 (514)
89 3ulq_A Response regulator aspa 99.2 2.5E-10 8.6E-15 88.0 12.2 78 16-93 113-205 (383)
90 1elw_A TPR1-domain of HOP; HOP 99.2 3.3E-10 1.1E-14 71.8 10.8 112 6-117 4-117 (118)
91 3rkv_A Putative peptidylprolyl 99.2 5.8E-11 2E-15 81.4 7.6 116 5-120 10-146 (162)
92 3nf1_A KLC 1, kinesin light ch 99.2 1.6E-10 5.5E-15 84.9 10.5 132 4-135 25-182 (311)
93 2gw1_A Mitochondrial precursor 99.2 3E-10 1E-14 89.1 12.4 91 3-93 3-94 (514)
94 3ulq_A Response regulator aspa 99.2 2.9E-10 1E-14 87.6 12.1 129 7-135 144-293 (383)
95 2yhc_A BAMD, UPF0169 lipoprote 99.2 5.1E-10 1.7E-14 80.9 12.5 124 11-134 46-212 (225)
96 2lni_A Stress-induced-phosphop 99.2 8.9E-11 3.1E-15 76.3 7.7 98 38-135 15-113 (133)
97 1elw_A TPR1-domain of HOP; HOP 99.2 1.8E-10 6.2E-15 73.0 8.8 97 39-135 4-101 (118)
98 2qfc_A PLCR protein; TPR, HTH, 99.2 1.4E-09 4.7E-14 81.4 14.8 131 5-135 74-225 (293)
99 3gyz_A Chaperone protein IPGC; 99.2 2.4E-10 8.2E-15 79.3 9.8 94 5-98 35-130 (151)
100 1na0_A Designed protein CTPR3; 99.2 6.9E-10 2.3E-14 70.8 11.2 114 7-120 10-125 (125)
101 1p5q_A FKBP52, FK506-binding p 99.2 9.8E-12 3.3E-16 95.9 2.6 116 20-135 127-259 (336)
102 1elr_A TPR2A-domain of HOP; HO 99.1 1.4E-10 4.7E-15 74.9 7.6 95 40-134 5-107 (131)
103 2vgx_A Chaperone SYCD; alterna 99.1 4.1E-10 1.4E-14 77.1 9.7 93 5-97 20-114 (148)
104 2dba_A Smooth muscle cell asso 99.1 3E-10 1E-14 75.2 8.8 98 38-135 27-128 (148)
105 3sz7_A HSC70 cochaperone (SGT) 99.1 6.6E-10 2.3E-14 76.2 10.5 98 38-135 10-108 (164)
106 4a1s_A PINS, partner of inscut 99.1 4.6E-10 1.6E-14 86.3 10.7 132 4-135 46-212 (411)
107 3ro2_A PINS homolog, G-protein 99.1 6E-10 2.1E-14 81.9 10.7 128 8-135 185-332 (338)
108 1wao_1 Serine/threonine protei 99.1 4.3E-11 1.5E-15 96.6 4.8 116 15-130 15-134 (477)
109 3sf4_A G-protein-signaling mod 99.1 6.6E-10 2.2E-14 84.5 11.1 128 8-135 189-336 (406)
110 2pzi_A Probable serine/threoni 99.1 8.3E-11 2.8E-15 98.5 6.6 118 17-135 402-529 (681)
111 3urz_A Uncharacterized protein 99.1 2.1E-10 7.2E-15 82.2 7.7 98 38-135 3-117 (208)
112 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 7.7E-10 2.6E-14 88.7 11.4 128 5-132 267-412 (457)
113 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 3.3E-11 1.1E-15 96.6 3.3 116 20-135 248-380 (457)
114 4a1s_A PINS, partner of inscut 99.1 9.4E-10 3.2E-14 84.5 11.4 128 8-135 225-372 (411)
115 1qqe_A Vesicular transport pro 99.1 1.5E-09 5.1E-14 81.5 12.1 125 11-135 82-228 (292)
116 2vyi_A SGTA protein; chaperone 99.1 5.5E-10 1.9E-14 71.8 8.5 98 38-135 11-109 (131)
117 3q49_B STIP1 homology and U bo 99.1 9E-10 3.1E-14 72.5 9.6 115 6-120 9-130 (137)
118 1a17_A Serine/threonine protei 99.1 5E-10 1.7E-14 75.5 8.5 97 39-135 13-110 (166)
119 3q15_A PSP28, response regulat 99.1 2.3E-09 8E-14 82.6 13.4 123 13-135 148-290 (378)
120 3gw4_A Uncharacterized protein 99.1 1.2E-09 4.3E-14 76.0 10.8 129 7-135 27-176 (203)
121 1ouv_A Conserved hypothetical 99.1 3.6E-09 1.2E-13 77.6 13.6 120 10-134 10-142 (273)
122 2c2l_A CHIP, carboxy terminus 99.1 5.6E-10 1.9E-14 83.8 9.2 85 10-94 8-94 (281)
123 1qqe_A Vesicular transport pro 99.1 1.8E-09 6.2E-14 81.0 12.0 133 3-135 34-187 (292)
124 2r5s_A Uncharacterized protein 99.1 9.2E-10 3.2E-14 76.5 9.6 77 20-96 88-168 (176)
125 3rkv_A Putative peptidylprolyl 99.1 6.2E-10 2.1E-14 76.2 8.2 96 40-135 12-126 (162)
126 1na0_A Designed protein CTPR3; 99.1 1E-09 3.5E-14 70.0 8.7 97 39-135 9-106 (125)
127 1elr_A TPR2A-domain of HOP; HO 99.1 1.5E-09 5.1E-14 69.9 9.5 115 6-121 4-127 (131)
128 2fbn_A 70 kDa peptidylprolyl i 99.1 8E-10 2.7E-14 78.0 8.8 97 39-135 38-151 (198)
129 3q15_A PSP28, response regulat 99.0 1.2E-09 4E-14 84.3 10.3 120 15-134 110-250 (378)
130 3rjv_A Putative SEL1 repeat pr 99.0 5.5E-09 1.9E-13 75.1 13.1 120 12-134 24-157 (212)
131 2xev_A YBGF; tetratricopeptide 99.0 3.9E-09 1.3E-13 68.7 10.8 97 39-135 2-105 (129)
132 3ro2_A PINS homolog, G-protein 99.0 3.1E-09 1E-13 78.0 10.8 129 7-135 6-172 (338)
133 1ihg_A Cyclophilin 40; ppiase 99.0 1.7E-09 5.9E-14 84.7 10.0 123 5-127 222-362 (370)
134 2dba_A Smooth muscle cell asso 99.0 3.4E-09 1.2E-13 70.0 9.9 112 6-117 28-144 (148)
135 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.7E-09 9.2E-14 75.2 9.8 93 41-135 8-100 (213)
136 1ouv_A Conserved hypothetical 99.0 5.8E-09 2E-13 76.5 11.9 73 19-93 91-171 (273)
137 2if4_A ATFKBP42; FKBP-like, al 99.0 9E-10 3.1E-14 85.0 7.1 131 5-135 178-328 (338)
138 1hxi_A PEX5, peroxisome target 99.0 2.7E-09 9.2E-14 70.6 8.1 88 10-97 21-110 (121)
139 2c2l_A CHIP, carboxy terminus 99.0 3.4E-09 1.2E-13 79.5 9.5 98 38-135 3-101 (281)
140 3mkr_A Coatomer subunit epsilo 99.0 1.1E-08 3.7E-13 77.2 12.2 127 9-135 133-264 (291)
141 3sf4_A G-protein-signaling mod 98.9 5.2E-09 1.8E-13 79.5 10.0 81 7-87 48-142 (406)
142 1ihg_A Cyclophilin 40; ppiase 98.9 2.7E-09 9.1E-14 83.6 8.3 96 40-135 224-336 (370)
143 3k9i_A BH0479 protein; putativ 98.9 7.7E-10 2.6E-14 72.2 4.1 80 18-97 2-86 (117)
144 4f3v_A ESX-1 secretion system 98.9 9.6E-09 3.3E-13 78.5 10.8 122 12-134 108-236 (282)
145 2l6j_A TPR repeat-containing p 98.9 3.7E-10 1.3E-14 71.7 1.8 84 9-92 7-98 (111)
146 2ifu_A Gamma-SNAP; membrane fu 98.9 1.8E-08 6.3E-13 76.0 11.4 25 109-133 198-222 (307)
147 3gw4_A Uncharacterized protein 98.9 1.1E-08 3.9E-13 71.0 9.2 118 17-135 3-136 (203)
148 3k9i_A BH0479 protein; putativ 98.9 1.2E-09 4.3E-14 71.1 3.9 85 51-135 2-90 (117)
149 2ifu_A Gamma-SNAP; membrane fu 98.9 3.4E-08 1.2E-12 74.5 12.4 132 3-135 33-184 (307)
150 2fo7_A Synthetic consensus TPR 98.9 1.1E-08 3.8E-13 65.5 7.8 96 40-135 2-98 (136)
151 1zu2_A Mitochondrial import re 98.9 1.7E-09 5.9E-14 76.2 4.1 95 18-135 14-120 (158)
152 4gcn_A Protein STI-1; structur 98.9 2.5E-08 8.5E-13 66.3 9.6 90 8-97 10-108 (127)
153 2l6j_A TPR repeat-containing p 98.8 1.1E-08 3.9E-13 64.6 7.5 94 38-131 3-103 (111)
154 2if4_A ATFKBP42; FKBP-like, al 98.8 6.2E-09 2.1E-13 80.3 7.1 97 39-135 179-293 (338)
155 2ond_A Cleavage stimulation fa 98.8 5.5E-08 1.9E-12 73.2 12.0 118 17-134 110-231 (308)
156 2kck_A TPR repeat; tetratricop 98.8 1.1E-08 3.6E-13 64.2 6.7 87 11-97 11-102 (112)
157 2ond_A Cleavage stimulation fa 98.8 8.5E-08 2.9E-12 72.1 12.5 112 23-134 33-162 (308)
158 3kae_A CDC27, possible protein 98.8 9.6E-08 3.3E-12 68.4 11.8 121 8-134 4-142 (242)
159 4f3v_A ESX-1 secretion system 98.8 1.9E-07 6.6E-12 71.3 14.1 89 45-134 108-199 (282)
160 4g1t_A Interferon-induced prot 98.8 1.5E-08 5.2E-13 79.2 8.0 44 20-63 227-271 (472)
161 4g1t_A Interferon-induced prot 98.8 2.2E-08 7.6E-13 78.3 8.8 123 13-135 145-276 (472)
162 3rjv_A Putative SEL1 repeat pr 98.8 1.2E-07 4E-12 68.1 11.4 112 21-134 68-196 (212)
163 3ma5_A Tetratricopeptide repea 98.7 2.1E-08 7.2E-13 63.9 6.1 61 36-96 3-65 (100)
164 1wao_1 Serine/threonine protei 98.7 4.3E-09 1.5E-13 84.9 3.0 96 40-135 7-103 (477)
165 2e2e_A Formate-dependent nitri 98.7 2.1E-07 7.2E-12 63.9 10.4 89 9-97 47-140 (177)
166 3ro3_A PINS homolog, G-protein 98.7 9.3E-08 3.2E-12 63.0 8.1 96 40-135 10-118 (164)
167 1hz4_A MALT regulatory protein 98.7 5.1E-07 1.8E-11 68.7 13.0 122 14-135 22-164 (373)
168 1klx_A Cysteine rich protein B 98.7 2.6E-07 9E-12 62.4 9.8 110 20-135 9-126 (138)
169 1hz4_A MALT regulatory protein 98.6 2.9E-07 9.9E-12 70.1 10.4 125 11-135 58-203 (373)
170 1na3_A Designed protein CTPR2; 98.6 8.8E-08 3E-12 58.4 6.2 79 41-119 11-90 (91)
171 2hr2_A Hypothetical protein; a 98.6 1.1E-07 3.9E-12 66.9 7.0 89 8-96 13-126 (159)
172 1dce_A Protein (RAB geranylger 98.6 4.7E-07 1.6E-11 74.8 11.8 114 22-135 89-221 (567)
173 1na3_A Designed protein CTPR2; 98.6 4E-07 1.4E-11 55.3 8.6 80 7-86 10-91 (91)
174 3qou_A Protein YBBN; thioredox 98.6 3E-07 1E-11 68.9 9.2 100 36-135 113-248 (287)
175 2xm6_A Protein corresponding t 98.6 1.2E-06 4E-11 69.8 12.6 111 20-134 310-431 (490)
176 2kat_A Uncharacterized protein 98.5 1.2E-07 4.2E-12 61.0 5.6 75 23-97 2-78 (115)
177 4b4t_Q 26S proteasome regulato 98.5 1.1E-06 3.6E-11 67.9 11.8 62 74-135 137-204 (434)
178 2kat_A Uncharacterized protein 98.5 2.1E-07 7.2E-12 59.8 6.5 68 68-135 15-82 (115)
179 2xm6_A Protein corresponding t 98.5 2.5E-06 8.5E-11 67.9 13.8 73 19-93 56-136 (490)
180 3e4b_A ALGK; tetratricopeptide 98.5 2.5E-06 8.5E-11 67.9 12.3 71 21-93 194-272 (452)
181 3n71_A Histone lysine methyltr 98.4 3.6E-06 1.2E-10 68.5 12.3 121 14-134 317-463 (490)
182 3dra_A Protein farnesyltransfe 98.4 2.4E-06 8.3E-11 65.6 10.3 75 19-93 45-131 (306)
183 3dra_A Protein farnesyltransfe 98.4 8.2E-06 2.8E-10 62.7 12.8 127 8-134 71-214 (306)
184 3e4b_A ALGK; tetratricopeptide 98.4 3.1E-06 1.1E-10 67.4 10.6 107 20-133 231-349 (452)
185 2ooe_A Cleavage stimulation fa 98.4 2E-06 6.9E-11 69.1 9.3 112 23-134 255-384 (530)
186 1dce_A Protein (RAB geranylger 98.3 5.3E-06 1.8E-10 68.4 11.7 119 17-135 39-173 (567)
187 1b89_A Protein (clathrin heavy 98.3 3.1E-06 1.1E-10 68.3 9.7 109 12-135 128-236 (449)
188 3ma5_A Tetratricopeptide repea 98.3 1.3E-06 4.5E-11 55.3 6.0 66 69-134 4-69 (100)
189 3dss_A Geranylgeranyl transfer 98.3 6E-06 2E-10 64.2 10.7 129 7-135 67-222 (331)
190 3n71_A Histone lysine methyltr 98.3 4.1E-06 1.4E-10 68.2 9.6 91 45-135 315-422 (490)
191 2ooe_A Cleavage stimulation fa 98.3 6.6E-06 2.3E-10 66.0 10.7 121 15-135 330-454 (530)
192 2kc7_A BFR218_protein; tetratr 98.2 2.5E-06 8.4E-11 53.0 5.8 84 42-133 3-88 (99)
193 3qww_A SET and MYND domain-con 98.2 7.1E-06 2.4E-10 65.8 9.7 86 50-135 309-411 (433)
194 3q7a_A Farnesyltransferase alp 98.2 1.7E-05 5.7E-10 62.2 11.1 113 22-134 105-236 (349)
195 3dss_A Geranylgeranyl transfer 98.2 2.3E-05 7.7E-10 61.0 11.7 126 10-135 33-174 (331)
196 3qwp_A SET and MYND domain-con 98.1 1.2E-05 4.1E-10 64.3 9.3 90 46-135 294-400 (429)
197 2kc7_A BFR218_protein; tetratr 98.1 2E-05 7E-10 48.7 7.4 64 12-75 6-72 (99)
198 1b89_A Protein (clathrin heavy 98.1 2.1E-06 7.1E-11 69.4 3.4 103 18-133 73-175 (449)
199 4b4t_Q 26S proteasome regulato 98.0 1.7E-05 6E-10 61.0 8.2 115 20-134 109-244 (434)
200 3q7a_A Farnesyltransferase alp 98.0 5.4E-05 1.9E-09 59.3 10.9 115 20-134 68-195 (349)
201 1xi4_A Clathrin heavy chain; a 98.0 8.4E-05 2.9E-09 67.3 12.6 119 12-134 1111-1249(1630)
202 3mv2_B Coatomer subunit epsilo 98.0 6.1E-05 2.1E-09 58.1 10.4 68 25-92 85-156 (310)
203 3ly7_A Transcriptional activat 98.0 4.8E-05 1.7E-09 60.0 9.7 115 20-135 213-339 (372)
204 1xi4_A Clathrin heavy chain; a 97.9 0.00014 4.9E-09 65.8 12.3 93 36-135 1192-1309(1630)
205 3mv2_B Coatomer subunit epsilo 97.8 9E-05 3.1E-09 57.1 8.5 118 14-134 108-239 (310)
206 2v5f_A Prolyl 4-hydroxylase su 97.8 4.8E-05 1.6E-09 48.7 5.8 58 38-95 4-69 (104)
207 3bee_A Putative YFRE protein; 97.6 0.00019 6.5E-09 45.4 6.9 60 38-97 5-68 (93)
208 3qwp_A SET and MYND domain-con 97.5 0.0012 4.2E-08 52.6 11.7 112 8-119 289-426 (429)
209 2v5f_A Prolyl 4-hydroxylase su 97.5 0.0002 6.8E-09 45.7 5.4 71 9-79 8-87 (104)
210 1pc2_A Mitochondria fission pr 97.4 0.00075 2.6E-08 46.9 7.3 60 37-96 30-95 (152)
211 3bee_A Putative YFRE protein; 97.3 0.00091 3.1E-08 42.2 6.6 67 69-135 3-72 (93)
212 1nzn_A CGI-135 protein, fissio 97.3 0.0031 1.1E-07 42.4 9.4 60 37-96 33-98 (126)
213 3qww_A SET and MYND domain-con 97.2 0.002 6.8E-08 51.6 9.3 78 18-95 310-405 (433)
214 1klx_A Cysteine rich protein B 97.0 0.0027 9.3E-08 42.2 6.9 77 19-97 38-122 (138)
215 4gns_B Protein CSD3, chitin bi 96.9 0.003 1E-07 54.0 8.0 58 8-65 339-397 (754)
216 1zu2_A Mitochondrial import re 96.5 0.002 7E-08 44.9 3.7 51 21-71 61-124 (158)
217 3o48_A Mitochondria fission 1 96.5 0.01 3.6E-07 40.2 6.8 60 37-96 38-102 (134)
218 1pc2_A Mitochondria fission pr 96.5 0.0061 2.1E-07 42.2 5.8 67 69-135 29-100 (152)
219 1y8m_A FIS1; mitochondria, unk 96.3 0.028 9.7E-07 38.5 8.4 61 36-96 36-101 (144)
220 4g26_A Pentatricopeptide repea 95.8 0.15 5.1E-06 41.2 11.6 86 8-93 28-126 (501)
221 4e6h_A MRNA 3'-END-processing 95.5 0.15 5E-06 43.0 11.0 113 23-135 326-463 (679)
222 2ff4_A Probable regulatory pro 95.5 0.065 2.2E-06 41.9 8.3 61 4-64 169-230 (388)
223 4g26_A Pentatricopeptide repea 95.4 0.12 4E-06 41.8 9.7 111 22-132 86-201 (501)
224 3ly7_A Transcriptional activat 95.3 0.05 1.7E-06 42.8 6.9 63 34-96 271-334 (372)
225 3ffl_A Anaphase-promoting comp 93.9 0.46 1.6E-05 33.3 8.4 75 8-82 65-165 (167)
226 3mkq_A Coatomer beta'-subunit; 93.8 1.4 4.9E-05 36.1 12.7 109 10-132 633-762 (814)
227 4e6h_A MRNA 3'-END-processing 93.2 0.69 2.4E-05 38.9 9.9 76 16-91 353-453 (679)
228 3u64_A Protein TP_0956; tetrat 93.0 0.12 4.2E-06 39.5 4.7 76 22-97 179-265 (301)
229 4gq2_M Nucleoporin NUP120; bet 93.0 1.2 4.1E-05 38.8 11.4 94 38-135 809-926 (950)
230 1nzn_A CGI-135 protein, fissio 92.5 0.2 6.9E-06 33.4 4.7 53 25-77 57-113 (126)
231 3mkq_B Coatomer subunit alpha; 92.4 2 6.8E-05 30.2 11.0 52 11-66 10-61 (177)
232 3mkq_A Coatomer beta'-subunit; 92.2 1.8 6.3E-05 35.5 11.1 49 13-65 659-707 (814)
233 4b4t_S RPN3, 26S proteasome re 91.8 0.51 1.8E-05 38.7 7.2 120 15-134 145-298 (523)
234 4b4t_P 26S proteasome regulato 91.7 0.81 2.8E-05 36.4 8.2 93 42-134 140-246 (445)
235 1y8m_A FIS1; mitochondria, unk 90.6 0.39 1.3E-05 32.8 4.6 54 23-76 59-115 (144)
236 1wy6_A Hypothetical protein ST 90.6 2.6 8.8E-05 29.1 8.6 117 15-133 16-152 (172)
237 2pm7_A Protein WEB1, protein t 90.2 2.9 9.8E-05 33.0 9.9 109 9-132 159-274 (399)
238 3o48_A Mitochondria fission 1 89.9 0.32 1.1E-05 32.9 3.6 56 22-77 59-117 (134)
239 3txn_A 26S proteasome regulato 89.5 1.2 4E-05 35.2 7.2 91 44-134 104-209 (394)
240 4fhn_B Nucleoporin NUP120; pro 88.8 2.4 8.2E-05 37.5 9.4 92 41-135 814-928 (1139)
241 3u64_A Protein TP_0956; tetrat 88.3 0.75 2.6E-05 35.1 5.1 48 20-67 218-268 (301)
242 2uwj_G Type III export protein 86.0 5.2 0.00018 25.9 9.7 88 3-95 3-91 (115)
243 2p58_C Putative type III secre 85.8 5.4 0.00018 25.8 9.5 87 4-95 5-92 (116)
244 4fhn_B Nucleoporin NUP120; pro 85.8 11 0.00036 33.4 11.7 115 11-129 817-961 (1139)
245 3kae_A CDC27, possible protein 85.5 4.4 0.00015 29.0 7.4 71 19-93 46-135 (242)
246 4b4t_R RPN7, 26S proteasome re 85.5 1.5 5E-05 34.6 5.6 94 41-134 133-236 (429)
247 2ff4_A Probable regulatory pro 84.9 5 0.00017 31.0 8.4 60 73-132 172-231 (388)
248 4gns_B Protein CSD3, chitin bi 84.3 7.6 0.00026 33.2 9.7 110 22-131 265-396 (754)
249 2w2u_A Hypothetical P60 katani 82.4 1.9 6.4E-05 26.4 4.0 27 109-135 22-48 (83)
250 1zbp_A Hypothetical protein VP 82.0 12 0.00043 28.0 9.1 121 13-134 4-128 (273)
251 4a5x_A MITD1, MIT domain-conta 80.7 2.2 7.4E-05 26.3 3.9 27 109-135 19-45 (86)
252 2v6y_A AAA family ATPase, P60 79.7 2.6 9E-05 25.7 4.0 27 109-135 14-40 (83)
253 2cfu_A SDSA1; SDS-hydrolase, l 79.0 1.7 5.9E-05 36.3 3.9 63 30-92 440-503 (658)
254 4gq2_M Nucleoporin NUP120; bet 77.0 5.9 0.0002 34.5 6.8 51 12-66 816-867 (950)
255 1qsa_A Protein (soluble lytic 73.2 15 0.00051 30.5 8.0 78 15-92 261-339 (618)
256 2v6x_A Vacuolar protein sortin 72.7 5.3 0.00018 24.2 4.0 27 109-135 16-42 (85)
257 1wfd_A Hypothetical protein 15 72.6 5.2 0.00018 24.9 4.0 27 109-135 18-44 (93)
258 3spa_A Mtrpol, DNA-directed RN 72.4 17 0.00058 32.5 8.4 87 5-91 126-220 (1134)
259 2wpv_A GET4, UPF0363 protein Y 72.3 29 0.001 26.3 11.9 24 107-130 135-158 (312)
260 3mv2_A Coatomer subunit alpha; 69.5 5.5 0.00019 30.6 4.3 35 6-40 207-241 (325)
261 2crb_A Nuclear receptor bindin 68.6 3.3 0.00011 26.1 2.3 25 111-135 20-44 (97)
262 2yhe_A SEC-alkyl sulfatase; hy 69.8 1.2 4.2E-05 37.5 0.0 60 32-91 454-514 (668)
263 3eab_A Spastin; spastin, MIT, 65.6 5 0.00017 25.0 2.8 30 105-134 15-47 (89)
264 3txn_A 26S proteasome regulato 65.3 17 0.00057 28.5 6.4 58 77-134 104-167 (394)
265 3mkr_B Coatomer subunit alpha; 65.2 6.9 0.00024 30.0 4.0 35 6-40 198-232 (320)
266 2dl1_A Spartin; SPG20, MIT, st 64.9 8.9 0.00031 25.1 4.0 30 105-134 21-50 (116)
267 2ynq_A ESSB; membrane protein, 64.8 31 0.0011 23.7 8.6 86 40-127 9-94 (161)
268 2cpt_A SKD1 protein, vacuolar 64.2 8.1 0.00028 25.1 3.7 26 110-135 22-47 (117)
269 3ph0_C ASCG; type III secretio 62.3 20 0.00067 20.5 6.8 55 5-59 5-60 (61)
270 1qsa_A Protein (soluble lytic 59.9 73 0.0025 26.4 11.8 113 21-134 229-347 (618)
271 3spa_A Mtrpol, DNA-directed RN 59.9 26 0.0009 31.4 7.1 90 42-132 130-227 (1134)
272 3t5v_B Nuclear mRNA export pro 58.9 24 0.00084 28.2 6.4 58 78-135 182-249 (455)
273 2uy1_A Cleavage stimulation fa 58.3 63 0.0022 25.5 8.8 53 24-76 197-250 (493)
274 4b4t_S RPN3, 26S proteasome re 57.7 18 0.00061 29.6 5.4 54 9-64 234-295 (523)
275 2rpa_A Katanin P60 ATPase-cont 57.1 11 0.00038 22.8 3.2 25 110-134 16-40 (78)
276 2uy1_A Cleavage stimulation fa 56.8 71 0.0024 25.2 10.7 22 15-37 222-243 (493)
277 3mkq_B Coatomer subunit alpha; 56.7 47 0.0016 23.1 9.1 54 34-94 3-56 (177)
278 3lpz_A GET4 (YOR164C homolog); 56.5 65 0.0022 24.7 11.6 24 107-130 137-160 (336)
279 4h7y_A Dual specificity protei 52.8 53 0.0018 22.6 8.0 98 35-134 8-122 (161)
280 1w53_A Phosphoserine phosphata 52.1 33 0.0011 21.0 4.8 44 1-45 3-50 (84)
281 3s6n_M SurviVal motor neuron p 50.3 9 0.00031 19.6 1.6 14 122-135 18-31 (37)
282 3ax2_A Mitochondrial import re 46.9 21 0.00073 21.2 3.2 25 111-135 22-46 (73)
283 2do5_A Splicing factor 3B subu 44.4 18 0.00062 20.1 2.4 13 2-14 31-43 (58)
284 1e52_A Excinuclease ABC subuni 44.1 36 0.0012 19.6 3.9 33 3-35 23-55 (63)
285 4b4t_R RPN7, 26S proteasome re 42.1 1.2E+02 0.004 23.5 8.3 84 10-93 135-229 (429)
286 1ya0_A SMG-7 transcript varian 39.7 76 0.0026 25.5 6.5 62 73-134 146-214 (497)
287 4b4t_O 26S proteasome regulato 38.8 1.3E+02 0.0045 23.1 8.7 89 45-133 82-196 (393)
288 3esl_A Checkpoint serine/threo 36.7 1.1E+02 0.0038 21.7 7.0 34 101-134 109-143 (202)
289 2cfu_A SDSA1; SDS-hydrolase, l 35.6 60 0.002 27.0 5.4 48 7-54 450-498 (658)
290 2wpv_A GET4, UPF0363 protein Y 34.5 1.5E+02 0.005 22.4 15.3 63 70-132 132-214 (312)
291 2ymb_A MITD1, MIT domain-conta 34.4 8.4 0.00029 28.6 0.0 27 109-135 26-52 (257)
292 3mzk_B Protein transport prote 29.3 2.1E+02 0.0073 22.6 9.9 27 106-132 278-304 (441)
293 3lpz_A GET4 (YOR164C homolog); 29.3 1.9E+02 0.0065 22.1 14.9 62 70-131 134-212 (336)
294 1om2_A Protein (mitochondrial 28.0 51 0.0017 20.6 2.9 24 111-134 25-48 (95)
295 1a1w_A FADD protein; apoptosis 27.6 64 0.0022 19.7 3.3 60 4-63 18-81 (91)
296 2nsz_A Programmed cell death p 25.4 93 0.0032 20.0 4.0 32 2-33 3-34 (129)
297 2j6y_A Phosphoserine phosphata 25.1 98 0.0034 19.9 3.9 44 1-45 3-50 (111)
298 2uwj_G Type III export protein 23.0 1.6E+02 0.0053 18.9 7.8 52 26-93 7-60 (115)
299 4a1g_A Mitotic checkpoint seri 22.0 1.1E+02 0.0038 20.6 3.9 34 101-134 95-129 (152)
300 1wgl_A TOLL-interacting protei 21.9 1E+02 0.0035 17.2 3.2 35 30-64 14-48 (59)
301 3esl_A Checkpoint serine/threo 21.8 2.2E+02 0.0074 20.1 6.7 86 7-93 34-136 (202)
302 1otr_A Protein CUE2; protein-p 21.7 1.1E+02 0.0037 16.6 3.6 33 30-62 9-41 (49)
303 1wy6_A Hypothetical protein ST 20.9 76 0.0026 21.7 2.8 29 37-65 123-151 (172)
304 2ion_A PDCD4, programmed cell 20.7 1.3E+02 0.0043 20.1 4.0 32 2-33 5-36 (152)
305 2dhy_A CUE domain-containing p 20.3 1.2E+02 0.0042 17.5 3.3 33 30-62 23-55 (67)
No 1
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.59 E-value=3e-15 Score=104.33 Aligned_cols=124 Identities=10% Similarity=0.017 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~ 83 (136)
++.+...+.+.+..+.. .++++.++| +++.++.+|.+++..|+|.+|+..+++. .++|.++..++.+|.|+.
T Consensus 8 ~~~~~~~l~~~~~~~~~------l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~ 81 (151)
T 3gyz_A 8 NESISTAVIDAINSGAT------LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ 81 (151)
T ss_dssp -CHHHHHHHHHHHTSCC------TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCC------HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34555666666666643 567788888 7889999999999999999999999765 447789999999999999
Q ss_pred HccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+|+|++|++.....+.-.|....+++.+|.+|..+|++++|+.+|++|+++
T Consensus 82 ~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 82 IKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999998776554444556678899999999999999999999999875
No 2
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.58 E-value=5.8e-14 Score=97.75 Aligned_cols=127 Identities=11% Similarity=-0.052 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHcc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~ 86 (136)
.-.+=..+..+|+|+.|+-+.++++.++| +++.++.+|.++...|++++|+..+++.. ..+.++......|.++...+
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMID 87 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcC
Confidence 33445566778999999999999999999 78888999999999999999988776542 24456666677777777777
Q ss_pred Chhhhhh----------------------------------hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 87 SGTSVCR----------------------------------CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 87 ~~~ea~~----------------------------------~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
+++++.+ .....+...|..+.+++.+|.+|..+|++++|+.+|++|
T Consensus 88 ~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 88 EKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7766642 211112234566778889999999999999999999999
Q ss_pred hcc
Q 032655 133 DEF 135 (136)
Q Consensus 133 L~~ 135 (136)
|++
T Consensus 168 l~~ 170 (184)
T 3vtx_A 168 LEK 170 (184)
T ss_dssp HHT
T ss_pred HhC
Confidence 875
No 3
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=3e-14 Score=103.16 Aligned_cols=126 Identities=13% Similarity=0.019 Sum_probs=91.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHc-
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEEL- 85 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l- 85 (136)
+..+-..+...+++++|+-..++++..+| +++.++.+|.++...|++.+|+..+++. .+.|.++..++.+|.++..+
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 87 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALY 87 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Confidence 34455566778889999999999998888 7888888899999999999998888664 34667788888889999888
Q ss_pred ----------cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 86 ----------RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 86 ----------~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
|++++|++.....+...|..+.+++.+|.+|..+|++++|+.+|++|++
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 88 RQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 8888887654433322333444555666666666666666666666654
No 4
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=5.6e-14 Score=97.86 Aligned_cols=98 Identities=7% Similarity=-0.010 Sum_probs=79.2
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhh------------------h-
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSV------------------M- 97 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~------------------~- 97 (136)
++.-.+.+|.+++..|+|++|+..+++. .++|.++.+++.+|.|+.++|++++|++... .
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 4555778999999999999999988664 4578899999999999999999999864210 0
Q ss_pred -----------hh----cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 98 -----------LR----LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 98 -----------~~----~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.. ...|....++..+|.+|..+|++++|+++|++++++
T Consensus 84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence 00 123455667889999999999999999999999874
No 5
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.54 E-value=1.7e-14 Score=96.87 Aligned_cols=105 Identities=11% Similarity=-0.000 Sum_probs=85.3
Q ss_pred HHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHH
Q 032655 31 EVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAI 108 (136)
Q Consensus 31 kl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i 108 (136)
|+..++| ..+....+|.+++..|+|++|+..+++. .+.+.++..++.+|.|+.++|++++|++.....+.-.|..+.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 4556777 5667888999999999999999988664 4577888999999999999999999988665544333455667
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++.+|.+|..+|++++|+++|++||++
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 889999999999999999999999875
No 6
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.52 E-value=2.3e-13 Score=97.89 Aligned_cols=129 Identities=12% Similarity=0.079 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~ 83 (136)
+.+...-..+...++|+.|+-+.++++.+.| ++..++.+|.|++..|+|.+|+..+++. ...+.++.+++.+|.++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 3455566678889999999999999999996 6778899999999999999999988664 446678889999999999
Q ss_pred HccChhhhhhhhhhhhc--ccc-----hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 84 ELRSGTSVCRCSVMLRL--LKM-----ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 84 ~l~~~~ea~~~~~~~~~--~~~-----~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+|++++|++.....+. +.. ..+.+++.+|.++..+|++++|+++|++|+++
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 99999999876543322 211 13366889999999999999999999999975
No 7
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.50 E-value=1.8e-14 Score=99.10 Aligned_cols=118 Identities=8% Similarity=0.006 Sum_probs=95.8
Q ss_pred HcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhh
Q 032655 18 SKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCS 95 (136)
Q Consensus 18 ~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~ 95 (136)
.+++++.|+-...+++...| ++...+.+|.+|+..|+|++|+..+++. .+.+.++.+++.+|.|+.++|++++|+...
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 35678889988899888888 6777889999999999999999988664 457788899999999999999999998876
Q ss_pred hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHH-HHhhcc
Q 032655 96 VMLRLLKMISSAICFLRGKAYEALGNCAQARLWL-VSCDEF 135 (136)
Q Consensus 96 ~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y-~~AL~~ 135 (136)
...+...|....+++.+|.+|..+|++++|++.| ++|+++
T Consensus 89 ~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 89 RRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 6544444556677888999999999988877664 788864
No 8
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=2.2e-13 Score=98.50 Aligned_cols=124 Identities=13% Similarity=0.020 Sum_probs=103.0
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhcc-----------CChHHHHHHHhcC-cccccCcchHHH
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLG-----------RHYRRPFHLLNSS-KIVLRDLRFRYL 77 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~-----------g~~~~A~~~l~~~-~l~~~~~~~~~l 77 (136)
.+-.-+...++++.|+-..++++.++| +++.++.+|.++... |++.+|+..+++. .+.+.++..++.
T Consensus 44 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 123 (217)
T 2pl2_A 44 WLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQ 123 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 344556778999999999999999999 788899999999999 9999999988665 446788899999
Q ss_pred HHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 78 AAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 78 ~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+|.++..+|++++|++.....+... ....+++.+|.+|..+|++++|+.+|+++|++
T Consensus 124 lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 124 RGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999987654432211 35667788999999999999999999998863
No 9
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.49 E-value=2.3e-13 Score=97.85 Aligned_cols=129 Identities=12% Similarity=0.002 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHH----------------HHHHHhccCChHHHHHHHhcC-ccc
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYM----------------QAQALFLGRHYRRPFHLLNSS-KIV 68 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~----------------la~~l~~~g~~~~A~~~l~~~-~l~ 68 (136)
+.+-......+..++|+.|+-+.++++..+| +++.+++ +|.++...|+|++|+..+++. .+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 3444455566789999999999999999999 7788888 999999999999999988665 446
Q ss_pred ccCcchHHHHHHHHHHccChhhhhhhhhhh--------------------------------hc---ccchHhHHHHHHH
Q 032655 69 LRDLRFRYLAAKCLEELRSGTSVCRCSVML--------------------------------RL---LKMISSAICFLRG 113 (136)
Q Consensus 69 ~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~--------------------------------~~---~~~~~a~i~~l~G 113 (136)
|.++..++.+|.++..+|++++|+...... .. ..+.....++.+|
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g 164 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG 164 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 788999999999999999999996421100 00 1122334567889
Q ss_pred HHHHHcCChHHHHHHHHHhhcc
Q 032655 114 KAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 114 ~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.++..+|++++|+.+|++|+++
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999975
No 10
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.48 E-value=8e-13 Score=93.60 Aligned_cols=128 Identities=7% Similarity=-0.076 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEE 84 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~ 84 (136)
...+..+-..+...++|+.|+...++++ .|++..++.+|.+++..|+|.+|+..+++. .+.+.++.+++.+|.++..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3345566777888999999999999985 668889999999999999999999988664 3456788899999999999
Q ss_pred ccChhhhhhhhhhhhc----------------ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 85 LRSGTSVCRCSVMLRL----------------LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 85 l~~~~ea~~~~~~~~~----------------~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+|+|++|++.....+. ..|....+++.+|.+|..+|++++|+.+|++++++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999875433221 12345678899999999999999999999999875
No 11
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=4.1e-13 Score=113.94 Aligned_cols=128 Identities=10% Similarity=-0.035 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHc
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l 85 (136)
-+..+=.-+..+|++++|+-..++++.++| +++.++.+|.+|...|++++|+..+++. .+.+.+..+++.+|.++.++
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~ 90 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 90 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344555667789999999999999999999 7888999999999999999999988664 45678889999999999999
Q ss_pred cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|++++|++.....+.-.|..+.+++.+|.+|..+|++++|+++|++||++
T Consensus 91 g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 91 QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999988766544444556677888999999999999999999998874
No 12
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.48 E-value=8.9e-13 Score=85.25 Aligned_cols=127 Identities=14% Similarity=0.099 Sum_probs=105.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHcc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~ 86 (136)
...+...+...++++.|+.+.++++...| ++..++.+|.++...|++++|..++++.. ..+.++...+.+|.++...|
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 34566777889999999999999999998 77788999999999999999999886643 34566778899999999999
Q ss_pred ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++++|.+.........|....+++.+|.++..+|+.++|..+|+++++.
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999987655433323344567788999999999999999999999864
No 13
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.47 E-value=4.9e-13 Score=97.51 Aligned_cols=127 Identities=11% Similarity=-0.076 Sum_probs=102.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcc----hHHHHHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLR----FRYLAAKCLE 83 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~----~~~l~a~c~~ 83 (136)
+-.....+...++++.|+-..++++..+| +++.++.+|.+++..|+|++|+..+++..-.+.++. +++.+|.++.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 34455677889999999999999999999 777899999999999999999998866432233333 3899999999
Q ss_pred HccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+|++++|++.....+...|....++..+|.+|..+|++++|+.+|++++++
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 9999999988665544333445567788899999999999999999988864
No 14
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.47 E-value=1.3e-12 Score=89.08 Aligned_cols=126 Identities=13% Similarity=0.052 Sum_probs=68.1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~ 86 (136)
+..+...+...++++.|+.+.++++...| ++..++.+|.++...|++++|+..+++. ...+.++.+.+.+|.++...|
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 90 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQ 90 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc
Confidence 33444444555555555555555555555 4444555555555555555555544332 112334445555555555555
Q ss_pred Chhhh----------------------------------hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 87 SGTSV----------------------------------CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 87 ~~~ea----------------------------------~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
++++| .+.....+...|....+++.+|.++..+|++++|..+|+++
T Consensus 91 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 91 KYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555 33222212122334556677788888888888888888877
Q ss_pred hc
Q 032655 133 DE 134 (136)
Q Consensus 133 L~ 134 (136)
++
T Consensus 171 ~~ 172 (186)
T 3as5_A 171 NE 172 (186)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 15
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.46 E-value=1.5e-13 Score=94.47 Aligned_cols=108 Identities=12% Similarity=0.124 Sum_probs=86.6
Q ss_pred HHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchH
Q 032655 28 FANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMIS 105 (136)
Q Consensus 28 ~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~ 105 (136)
..++++.++| +++.++.+|.+++..|+|.+|+..+++. .+.+.++..++.+|.|+..+|+|++|++.....+...|..
T Consensus 9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 4567788888 6778888999999999999999888664 3366788888999999999999999987665544333455
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 106 SAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 106 a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...++.+|.+|..+|++++|+.+|++++++
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667788899999999999999999998863
No 16
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=1.3e-12 Score=89.14 Aligned_cols=95 Identities=12% Similarity=-0.062 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhhhhh-------------------
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR------------------- 99 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~------------------- 99 (136)
..++.+|.+++..|++.+|+..+++.. ..+.++.+.+.+|.++...|++++|.+......
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 457778999999999999999997753 355778899999999999999999964321110
Q ss_pred ---------------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 100 ---------------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 100 ---------------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
...|....+++.+|.++..+|++++|+.+|+++++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 01233445566777777777777777777777664
No 17
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=1.9e-12 Score=92.50 Aligned_cols=124 Identities=11% Similarity=0.096 Sum_probs=69.5
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChh
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
+..-+...++++.|+...++++...| ++..++.+|.++...|++++|+..+++. ...+.++...+.+|.++...|+++
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPK 142 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHH
Confidence 33444445555555555555555555 4444555555555555555555544332 122334445555555555555555
Q ss_pred hh----------------------------------hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 90 SV----------------------------------CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 90 ea----------------------------------~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+| ++.....+...|....+++.+|.+|..+|++++|..+|++++++
T Consensus 143 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 143 LALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 54 33322222222444567778899999999999999999988764
No 18
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.9e-12 Score=92.98 Aligned_cols=130 Identities=11% Similarity=-0.037 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhc--------------------------cCC-ChHHHHHHHHHHhccCChHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAA--------------------------LTN-DPADVYMQAQALFLGRHYRRP 58 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~--------------------------~~~-~~~~~~~la~~l~~~g~~~~A 58 (136)
..-+..+..-+...+++++|+-+.++++. ..| ++..++.+|.+++..|+|.+|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 34455666777788999999999999888 455 456688999999999999999
Q ss_pred HHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 59 FHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 59 ~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+..+++. ...+.++.+++.+|.++..+|++++|+......+...|.....++.+|.+|..+|++++|+.+|++++++
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9988765 3356788899999999999999999988665544334555677889999999999999999999999864
No 19
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=4.1e-12 Score=89.42 Aligned_cols=127 Identities=8% Similarity=-0.078 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHc
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l 85 (136)
-+..+...+...++++.|+-+.++++...| ++..++.+|.++...|++++|+..+++.. ..+.+....+.+|.++...
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 345556666777777777777777777777 56667777777777777777777665532 2445666777777777777
Q ss_pred -cChhhhhhhhhhhhc--ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 86 -RSGTSVCRCSVMLRL--LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 86 -~~~~ea~~~~~~~~~--~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
|++++|++.....+. ..|....+++.+|.++..+|++++|+.+|+++++
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777654332221 2233344455556666666666666665555553
No 20
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.43 E-value=2.8e-12 Score=94.18 Aligned_cols=129 Identities=12% Similarity=0.058 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-C---hHHHHHHHHHHhccCChHHHHHHHhcCc-ccc---cCcchHHHH
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-D---PADVYMQAQALFLGRHYRRPFHLLNSSK-IVL---RDLRFRYLA 78 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~---~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~---~~~~~~~l~ 78 (136)
+.+-..-..++..++|+.|+-..++++...| + ++.++.+|.|++..|+|.+|+..+++.- +.+ ..+..++.+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 4456667778889999999999999999999 5 6789999999999999999999887643 223 335678999
Q ss_pred HHHHHH--------ccChhhhhhhhhhhhc--c-cch--------------HhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 79 AKCLEE--------LRSGTSVCRCSVMLRL--L-KMI--------------SSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 79 a~c~~~--------l~~~~ea~~~~~~~~~--~-~~~--------------~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
|.|+++ +|++++|+......+. + .+. .+..++.+|.+|..+|++++|+..|++++
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999 9999999875543221 1 111 12223889999999999999999999998
Q ss_pred cc
Q 032655 134 EF 135 (136)
Q Consensus 134 ~~ 135 (136)
+.
T Consensus 176 ~~ 177 (261)
T 3qky_A 176 DA 177 (261)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 21
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.43 E-value=3.3e-12 Score=102.76 Aligned_cols=131 Identities=25% Similarity=0.331 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE 84 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~ 84 (136)
.+..+..+++.+..++++++|+.+.++++...|++.+++.+|.+++..|++.+|++++++....+.++.+++.+|.++.+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVK 162 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 34568899999999999999999999999999988999999999999999999999998875557888999999999999
Q ss_pred ccChhhhhhhhhhhh----------------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 85 LRSGTSVCRCSVMLR----------------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 85 l~~~~ea~~~~~~~~----------------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.|++++|........ .+.+.....++.+|.+|.+.|++++|+..|+++++.
T Consensus 163 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp TTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999986543110 023456788899999999999999999999999863
No 22
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.43 E-value=4.7e-12 Score=91.43 Aligned_cols=129 Identities=10% Similarity=-0.097 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~ 83 (136)
.+-+..+...+...++++.|+-+.++++...| ++..++.+|.++...|++.+|+..+++. ...+.+....+.+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 44556666777788888888888888888888 6777888888888888888888877654 234556777888888888
Q ss_pred HccChhhhhhhhhhhhc--ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 84 ELRSGTSVCRCSVMLRL--LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 84 ~l~~~~ea~~~~~~~~~--~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
..|++++|.+.....+. ..|....+++.+|.+|..+|++++|+.+|+++++
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888888754433222 2233444555556666666666666666665554
No 23
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.41 E-value=3.3e-13 Score=91.35 Aligned_cols=105 Identities=11% Similarity=0.109 Sum_probs=64.0
Q ss_pred HHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhH
Q 032655 30 NEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSA 107 (136)
Q Consensus 30 ekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~ 107 (136)
++++.++| +++.++.+|.+++..|+|.+|+..+++. ...+.++..++.+|.|+..+|+|++|+......+...|....
T Consensus 8 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 87 (142)
T 2xcb_A 8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87 (142)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence 44455555 4555666677777777777776666543 224556666667777777777777766654433322233445
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 108 ICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 108 i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+++.+|.+|..+|++++|+.+|+++++
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 88 FPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556667777777777777777776664
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.41 E-value=3.9e-12 Score=94.38 Aligned_cols=120 Identities=9% Similarity=-0.022 Sum_probs=55.4
Q ss_pred HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-c---------ccCcchHHHHHHHHHH
Q 032655 16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-V---------LRDLRFRYLAAKCLEE 84 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~---------~~~~~~~~l~a~c~~~ 84 (136)
+...++++.|+-+.++++...| ++..++.+|.++...|++++|+..+++..- . +..+...+.+|.++..
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 3334444444444444444444 333444444444444444444444332211 0 1223344444444444
Q ss_pred ccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 85 LRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 85 l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+|++++|.+.....+...|....+++.+|.+|..+|++++|+++|++++++
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 444444443332222222334455566666666666666666666666653
No 25
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.41 E-value=7.8e-13 Score=91.73 Aligned_cols=119 Identities=8% Similarity=-0.045 Sum_probs=98.6
Q ss_pred HHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHH-HHHccCh--hhh
Q 032655 17 VSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKC-LEELRSG--TSV 91 (136)
Q Consensus 17 l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c-~~~l~~~--~ea 91 (136)
...++++.|+-..++++...| +++.++.+|.+++..|+|.+|+..+++. .+.+.++...+.+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 457899999999999999999 7889999999999999999999988765 3456788899999999 8899999 999
Q ss_pred hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+......+...|....+++.+|.+|..+|++++|+.+|++++++
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 87665444334455677889999999999999999999999875
No 26
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.41 E-value=4.4e-12 Score=85.78 Aligned_cols=131 Identities=11% Similarity=-0.007 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHH
Q 032655 4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKC 81 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c 81 (136)
+..+.+..+...+...++|+.|+.+.++++...| ++..++.+|.++...|+|.+|+..+++. .+.+.++..++.+|.+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3455677778888899999999999999999999 7888999999999999999999988664 3456788899999999
Q ss_pred HHHccChhhhhhhhhhhhc--ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 82 LEELRSGTSVCRCSVMLRL--LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 82 ~~~l~~~~ea~~~~~~~~~--~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+..+|++++|.......+. +........+.+|..+.++|++++|+..|.++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999876654332 2222333334556669999999999999998754
No 27
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.41 E-value=2.6e-12 Score=92.31 Aligned_cols=124 Identities=8% Similarity=-0.076 Sum_probs=105.8
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCc-------chHHHHHHHH
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDL-------RFRYLAAKCL 82 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~-------~~~~l~a~c~ 82 (136)
+-.-+...++++.|+-+.++++..+| ++..++.+|.++...|+|++|+..+++. .+.+.++ .+++..|.++
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~ 127 (228)
T 4i17_A 48 CGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKF 127 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHH
Confidence 44556778999999999999999999 6778999999999999999999988764 3355666 6689999999
Q ss_pred HHccChhhhhhhhhhhhcccch--HhHHHHHHHHHHHHcCCh---------------------------HHHHHHHHHhh
Q 032655 83 EELRSGTSVCRCSVMLRLLKMI--SSAICFLRGKAYEALGNC---------------------------AQARLWLVSCD 133 (136)
Q Consensus 83 ~~l~~~~ea~~~~~~~~~~~~~--~a~i~~l~G~~~~~~~~~---------------------------~~A~~~y~~AL 133 (136)
..+|++++|++.....+...|. .+.+++.+|.+|..+|+. ++|+.+|++|+
T Consensus 128 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 128 QQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999877665544566 678888999999999988 99999999998
Q ss_pred cc
Q 032655 134 EF 135 (136)
Q Consensus 134 ~~ 135 (136)
++
T Consensus 208 ~l 209 (228)
T 4i17_A 208 TL 209 (228)
T ss_dssp HH
T ss_pred hc
Confidence 74
No 28
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=2.2e-12 Score=101.90 Aligned_cols=120 Identities=6% Similarity=-0.091 Sum_probs=86.6
Q ss_pred HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC-hHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhh
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRH-YRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~-~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
-+...++++.|+-..++++.++| ++..++.+|.++...|+ +++|+..+++. .+.+.+..+++.+|.++..+|++++|
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eA 185 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE 185 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHH
Confidence 34567888888888888888888 67788888888888886 88888887654 34667888888888888888888888
Q ss_pred hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+......+...|....+++.+|.++..+|++++|+.+|.+||+
T Consensus 186 l~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 186 LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7655443333334445556666666666666666666666654
No 29
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.2e-11 Score=88.66 Aligned_cols=130 Identities=13% Similarity=0.007 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccC-------cchHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD-------LRFRY 76 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~-------~~~~~ 76 (136)
..+.+..+-..+...++|++|+-+.++++...+++..++.+|.+++..|+|++|+..+++.. +.+.+ +.+.+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 34567777788888899999999999988877777788888999999999999988886643 23333 57888
Q ss_pred HHHHHHHHccChhhhhhhhhhh--------------------------hcccchHhHHHHHHHHHHHHcCChHHHHHHHH
Q 032655 77 LAAKCLEELRSGTSVCRCSVML--------------------------RLLKMISSAICFLRGKAYEALGNCAQARLWLV 130 (136)
Q Consensus 77 l~a~c~~~l~~~~ea~~~~~~~--------------------------~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~ 130 (136)
.+|.++..+|++++|++..... ....|..+.+++.+|.++..+|++++|+.+|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 163 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYT 163 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8999999999998886422110 00224455556666777777777777777776
Q ss_pred Hhhc
Q 032655 131 SCDE 134 (136)
Q Consensus 131 ~AL~ 134 (136)
++++
T Consensus 164 ~a~~ 167 (258)
T 3uq3_A 164 EMIK 167 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6664
No 30
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=99.38 E-value=1.6e-12 Score=92.22 Aligned_cols=105 Identities=20% Similarity=0.282 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChH---------HHHHHHHHHhccCChHHHHHHHhc----CcccccCc--
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPA---------DVYMQAQALFLGRHYRRPFHLLNS----SKIVLRDL-- 72 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~---------~~~~la~~l~~~g~~~~A~~~l~~----~~l~~~~~-- 72 (136)
|+++|+..++.++|++|++.++.++++.+ +++ ..+++|.++|..|+|.+|...+++ .+..++++
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 67888888899999999999999999985 333 579999999999999999998876 22211111
Q ss_pred --------------------chHHHHHHHHHHccChhhhhhhhhhhhcccch---HhHHHHHHHHHHH
Q 032655 73 --------------------RFRYLAAKCLEELRSGTSVCRCSVMLRLLKMI---SSAICFLRGKAYE 117 (136)
Q Consensus 73 --------------------~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~---~a~i~~l~G~~~~ 117 (136)
+++|.+|.|+.++|++++|+...+ ++|. ...|..++|++|+
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le----~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD----GIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH----TSCGGGCCHHHHHHHHHHCC
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh----cCCchhcCHHHHHHHHHHhc
Confidence 699999999999999999988665 3332 4457889999885
No 31
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.37 E-value=1e-11 Score=88.72 Aligned_cols=86 Identities=9% Similarity=-0.096 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~ 86 (136)
+..+...+...++++.|+.+.++++...| ++..++.+|.+++..|++.+|+..+++. ...+.+..+.+.+|.++..+|
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc
Confidence 44556667889999999999999999999 7888999999999999999999988764 335567889999999999999
Q ss_pred Chhhhhhh
Q 032655 87 SGTSVCRC 94 (136)
Q Consensus 87 ~~~ea~~~ 94 (136)
++++|.+.
T Consensus 106 ~~~~A~~~ 113 (243)
T 2q7f_A 106 MYKEAKDM 113 (243)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 99999754
No 32
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.37 E-value=1.2e-11 Score=91.64 Aligned_cols=121 Identities=7% Similarity=0.021 Sum_probs=69.8
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccC-ChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhh
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGR-HYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTS 90 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g-~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~e 90 (136)
.-+...+++++|+.++++++...| ++..++.+|.++...| ++.+|+..+++. .+.+.++.+++.+|.++...|++++
T Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 143 (330)
T 3hym_B 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQ 143 (330)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHH
Confidence 344555666666666666666666 5566666666666666 666666665443 2344555666666666666666666
Q ss_pred hhhhhhh----------------------------------hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 91 VCRCSVM----------------------------------LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 91 a~~~~~~----------------------------------~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
|++.... .+...|....+++.+|.+|..+|++++|+.+|+++++
T Consensus 144 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 221 (330)
T 3hym_B 144 AMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE 221 (330)
T ss_dssp HHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 6432111 0112233445555666666666666666666666654
No 33
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.37 E-value=2.2e-12 Score=84.88 Aligned_cols=113 Identities=16% Similarity=-0.025 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEE 84 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~ 84 (136)
+.+...-..+...++|+.|+-+.++++.++| ++..++.+|.|++..|+|.+|+..+++. .+.+.++..++.+|.|+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3455555666667777777777777777777 5666777777777777777777766443 3345566667777777777
Q ss_pred ccChhhhhhhhhhhhc------ccchHhHHHHHHHHHHHHc
Q 032655 85 LRSGTSVCRCSVMLRL------LKMISSAICFLRGKAYEAL 119 (136)
Q Consensus 85 l~~~~ea~~~~~~~~~------~~~~~a~i~~l~G~~~~~~ 119 (136)
+|++++|++.....+. ..|....+...++.+.+++
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 7777777654433222 1255555555666665543
No 34
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.36 E-value=3.6e-12 Score=106.85 Aligned_cols=125 Identities=14% Similarity=-0.027 Sum_probs=108.8
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~ 87 (136)
..+..-++..++++.|+-..++++.++| +++.++.+|.+++..|+|++|+..+++. .+.+.++..++.+|.++.++|+
T Consensus 437 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~ 516 (681)
T 2pzi_A 437 LMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGN 516 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 3444567788999999999999999999 7889999999999999999999988765 4577899999999999999999
Q ss_pred hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|++ ++.....+...|....+++.+|.+|.++|++++|+.+|++|+++
T Consensus 517 ~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 517 TDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp CCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred hHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 999 87666544444556678899999999999999999999999874
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.35 E-value=2.3e-11 Score=85.52 Aligned_cols=126 Identities=4% Similarity=-0.181 Sum_probs=100.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhcc-CChHHHHHHHhcCcc---cccCcchHHHHHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLG-RHYRRPFHLLNSSKI---VLRDLRFRYLAAKCLE 83 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~-g~~~~A~~~l~~~~l---~~~~~~~~~l~a~c~~ 83 (136)
+..+..-+...++++.|+.+.++++...| ++..++.+|.++... |++++|+..+++..- .+.....++..|.++.
T Consensus 45 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 124 (225)
T 2vq2_A 45 WLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSA 124 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHH
Confidence 34455667788999999999999999999 778899999999999 999999998866432 2334578899999999
Q ss_pred HccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
..|++++|++.....+...|....+++.+|.++..+|++++|...|+++++
T Consensus 125 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 125 KQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQS 175 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998765443332334456677888888888999999888888875
No 36
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.35 E-value=2.2e-11 Score=90.88 Aligned_cols=130 Identities=9% Similarity=-0.086 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~ 83 (136)
++.+..+...+...++|++|+-..++++...| +++.++.+|.+++..|++.+|+..+++. .+.+.++.+++.+|.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34566777888899999999999999999999 7889999999999999999999988664 335678899999999999
Q ss_pred HccChhhhhhhhhhhhcccc---hHhHHHHH------------HHHHHHHcCChHHHHHHHHHhhcc
Q 032655 84 ELRSGTSVCRCSVMLRLLKM---ISSAICFL------------RGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 84 ~l~~~~ea~~~~~~~~~~~~---~~a~i~~l------------~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..|++++|.......+...| .....+.. +|.++...|++++|+.+|.++++.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999876554333223 33333333 389999999999999999998863
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.34 E-value=4.1e-11 Score=86.97 Aligned_cols=130 Identities=13% Similarity=-0.087 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~ 83 (136)
..-+..+..-+...++++.|+-+.++++..+| ++..++.+|.++...|+|++|+..+++.. +.+.++..++.+|.++.
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~ 122 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 122 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence 34456667778889999999999999999999 78889999999999999999999886653 35678899999999999
Q ss_pred HccChhhhhhhhh---------------------------------h--h------------------------h-----
Q 032655 84 ELRSGTSVCRCSV---------------------------------M--L------------------------R----- 99 (136)
Q Consensus 84 ~l~~~~ea~~~~~---------------------------------~--~------------------------~----- 99 (136)
.+|++++|.+... . . .
T Consensus 123 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 202 (275)
T 1xnf_A 123 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKA 202 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999853100 0 0 0
Q ss_pred --cccc----hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 100 --LLKM----ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 100 --~~~~----~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...| ..+.+++.+|.+|..+|++++|+.+|++++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 203 DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 0001 12567789999999999999999999999875
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.34 E-value=3.9e-11 Score=86.53 Aligned_cols=124 Identities=8% Similarity=-0.068 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc---ccccCcchHHHHHHHHHHc
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK---IVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~---l~~~~~~~~~l~a~c~~~l 85 (136)
..+..-+...++++.|+-+.++++...| ++..++.+|.+++..|++++|+.++++.. ..+.+....+.+|.++...
T Consensus 75 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 154 (252)
T 2ho1_A 75 AALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQM 154 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHc
Confidence 3455566777888888888888888888 66777888888888888888888775542 2344566778888888888
Q ss_pred cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 86 RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 86 ~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
|++++|.+.....+...|....+++.+|.+|..+|++++|..+|++++
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888654332211112223333444444444444444444444444
No 39
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.33 E-value=1.9e-11 Score=93.81 Aligned_cols=120 Identities=13% Similarity=-0.077 Sum_probs=67.8
Q ss_pred HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655 16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
+...++++.|+-+.++++...| +++.++.+|.++...|++++|+..+++. .+.+.++..++.+|.++.+.|++++|.+
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444555555555555555554 3444444555555555555555544332 1233444444555555555555555544
Q ss_pred hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.....+...|....+++.+|.+|.++|++++|+.+|++++++
T Consensus 327 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 333222233555667888899999999999999999998864
No 40
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.33 E-value=1.2e-11 Score=82.85 Aligned_cols=111 Identities=12% Similarity=0.011 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL 82 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~ 82 (136)
..+..+..=..+..+|+|+.|+...++++.++| ++..++.+|.|++..|++++|+..+++. .+++.++.+++.+|.|+
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 345566666778899999999999999999999 8889999999999999999999988664 45778899999999999
Q ss_pred HHccChhhhhhhhhhhhcccchHhHHHHHHHHH
Q 032655 83 EELRSGTSVCRCSVMLRLLKMISSAICFLRGKA 115 (136)
Q Consensus 83 ~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~ 115 (136)
..+|+|++|++.....+.-.|....+...+|.+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999987655443334444455555655
No 41
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.33 E-value=1.4e-11 Score=91.28 Aligned_cols=127 Identities=13% Similarity=-0.013 Sum_probs=99.6
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~ 86 (136)
+..+..-+...++++.|+.+.++++...| ++..++.+|.++...|++++|+..+++. ...+.++.+++.+|.++..+|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 44455667788999999999999999988 6778888999999999999999888664 335567788899999999999
Q ss_pred Chhhhhhhhhhhhcccch------------HhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 87 SGTSVCRCSVMLRLLKMI------------SSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 87 ~~~ea~~~~~~~~~~~~~------------~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++++|.......+...|. ...++..+|.++..+|+.++|...|+++++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 999987654432211111 5667788999999999999999999888753
No 42
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.33 E-value=4.5e-11 Score=90.02 Aligned_cols=126 Identities=11% Similarity=-0.023 Sum_probs=101.4
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc--------------------
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-------------------- 67 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-------------------- 67 (136)
+..+-..++..|+++.|+-..++++..+| +++..+.+|.++...|++++|+..+++..-
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~ 199 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQA 199 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhc
Confidence 44556677889999999999999999999 888999999999999999999998877521
Q ss_pred ---------------cccCcchHHHHHHHHHHccChhhhhhhhhhhhc--ccchHhHHHHHHHHHHHHcCChHHHHHHHH
Q 032655 68 ---------------VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL--LKMISSAICFLRGKAYEALGNCAQARLWLV 130 (136)
Q Consensus 68 ---------------~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~--~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~ 130 (136)
.+.++..++.+|.++...|++++|++.....+. +......+...+|.++..+|+.++|+..|+
T Consensus 200 ~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 200 ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 234567788888888888888888776543332 222346778888999999999999999999
Q ss_pred Hhhc
Q 032655 131 SCDE 134 (136)
Q Consensus 131 ~AL~ 134 (136)
++|.
T Consensus 280 ~al~ 283 (287)
T 3qou_A 280 RQLY 283 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9885
No 43
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.33 E-value=4.2e-12 Score=96.67 Aligned_cols=124 Identities=11% Similarity=0.045 Sum_probs=103.0
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCCC---hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTND---PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~~---~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~ 87 (136)
+..-+...++++.|+-+.++++...|+ +..++.+|.++...|++.+|+..+++. ...+.++..++.+|.++.++|+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 345667789999999999999999984 678999999999999999999988764 3456788899999999999999
Q ss_pred hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+++|+......+...|....+++.+|.+|..+|++++|+.+|++|+++
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999998766544334555778889999999999999999999999864
No 44
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.32 E-value=3.7e-11 Score=78.20 Aligned_cols=116 Identities=12% Similarity=-0.028 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~ 83 (136)
...+..+...+...++|+.|+...++++...| ++..++.+|.+++..|++++|+..+++. ...+.++.+++.+|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 45567777888889999999999999999998 7788999999999999999999988664 335677888999999999
Q ss_pred HccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCC
Q 032655 84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGN 121 (136)
Q Consensus 84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~ 121 (136)
.+|++++|.......+...|....++..+|.++..+||
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999876654433334456677888999988775
No 45
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=1.1e-11 Score=99.55 Aligned_cols=123 Identities=10% Similarity=-0.026 Sum_probs=80.1
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhcc---------CChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLG---------RHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL 82 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~---------g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~ 82 (136)
-.-+...++++.|+-+.++++.++|++..++.+|.++... |++++|+..+++. .+.+.+...++.+|.++
T Consensus 144 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 223 (474)
T 4abn_A 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAY 223 (474)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3344555666666666666666666655566666666666 6666666655443 23445556666666666
Q ss_pred HHc--------cChhhhhhhhhhhhcccc---hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 83 EEL--------RSGTSVCRCSVMLRLLKM---ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 83 ~~l--------~~~~ea~~~~~~~~~~~~---~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..+ |++++|++.....+...| ..+.+++.+|.+|..+|++++|+++|++|+++
T Consensus 224 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 224 LSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666 666666654433222234 56778889999999999999999999999864
No 46
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=1e-11 Score=105.37 Aligned_cols=123 Identities=6% Similarity=-0.125 Sum_probs=108.4
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhh
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTS 90 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~e 90 (136)
-.-+..+|++++|+-..++++.++| +++.++.+|.++...|++++|+..+++. .+.+.+...++.+|.++.++|++++
T Consensus 50 g~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~e 129 (723)
T 4gyw_A 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE 129 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445678999999999999999999 7889999999999999999999988665 4577889999999999999999999
Q ss_pred hhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 91 VCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 91 a~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|++.....+.-.|..+.+++.+|.+|..+|+.++|.+.|++++++
T Consensus 130 Ai~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l 174 (723)
T 4gyw_A 130 AIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence 998776555444566778899999999999999999999999864
No 47
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.31 E-value=1.1e-11 Score=82.81 Aligned_cols=95 Identities=8% Similarity=0.019 Sum_probs=75.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhh--hc-----ccchHhHHHHHH
Q 032655 41 DVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVML--RL-----LKMISSAICFLR 112 (136)
Q Consensus 41 ~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~--~~-----~~~~~a~i~~l~ 112 (136)
....+|.+++..|+|++|+..++++ .++|.++.+++.+|.|++++|+|++|++..... ++ ..+..+.+++.+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3556899999999999999988654 456788888999999999999999998754322 11 123356678899
Q ss_pred HHHHHHcCChHHHHHHHHHhhcc
Q 032655 113 GKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 113 G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|.+|..+|++++|+++|++||+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999863
No 48
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.30 E-value=1.7e-11 Score=92.66 Aligned_cols=126 Identities=13% Similarity=-0.060 Sum_probs=90.6
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~ 86 (136)
+..+..-+...++++.|+-+.++++...| ++..++.+|.++...|++.+|+..+++. .+.+.++.+++.+|.++.++|
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 34455666677888888888888888887 6677788888888888888888877654 334566777888888888888
Q ss_pred Chhhhhhhhhhhhc--c---------cchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 87 SGTSVCRCSVMLRL--L---------KMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 87 ~~~ea~~~~~~~~~--~---------~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
++++|.+.....+. + .+....++..+|.+|..+|+.++|..+++++|+
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 88888764432211 0 112256777888888888888888888887775
No 49
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.30 E-value=1.3e-11 Score=81.57 Aligned_cols=97 Identities=14% Similarity=0.078 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY 116 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~ 116 (136)
+++.++.+|.+++..|+|.+|+..+++. ...+.++.+++.+|.|+..+|+|++|+......+...|....+++.+|.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4556666666677777776666666443 224455666666677777777776666544333222233445566667777
Q ss_pred HHcCChHHHHHHHHHhhc
Q 032655 117 EALGNCAQARLWLVSCDE 134 (136)
Q Consensus 117 ~~~~~~~~A~~~y~~AL~ 134 (136)
..+|++++|+.+|+++++
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777766664
No 50
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.30 E-value=4.3e-11 Score=86.57 Aligned_cols=128 Identities=6% Similarity=-0.092 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-Ch---HHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcc---hHHHHH
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DP---ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLR---FRYLAA 79 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~---~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~---~~~l~a 79 (136)
.+-.....++..++|+.|+-..++++...| ++ +.++.+|.+++..|+|.+|+..+++.- ..+.++. +++..|
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344556678889999999999999999998 43 579999999999999999999887642 3445554 789999
Q ss_pred HHHHH------------------ccChhhhhhhhhhhhcccc-----------------hHhHHHHHHHHHHHHcCChHH
Q 032655 80 KCLEE------------------LRSGTSVCRCSVMLRLLKM-----------------ISSAICFLRGKAYEALGNCAQ 124 (136)
Q Consensus 80 ~c~~~------------------l~~~~ea~~~~~~~~~~~~-----------------~~a~i~~l~G~~~~~~~~~~~ 124 (136)
.|+++ .|++++|+......+...| ..+...+.+|.+|.+.|++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 99987 5688888765433221111 111223678999999999999
Q ss_pred HHHHHHHhhcc
Q 032655 125 ARLWLVSCDEF 135 (136)
Q Consensus 125 A~~~y~~AL~~ 135 (136)
|+..|+++++.
T Consensus 166 A~~~~~~~l~~ 176 (225)
T 2yhc_A 166 VVNRVEGMLRD 176 (225)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998863
No 51
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.30 E-value=5.2e-11 Score=76.80 Aligned_cols=118 Identities=13% Similarity=-0.029 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL 82 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~ 82 (136)
....+..+...+...++++.|+.+.++++...| ++..++.+|.++...|++.+|+..+++. ...+.++.+++.+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 345566777888889999999999999999999 7888999999999999999999988664 33567788999999999
Q ss_pred HHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCCh
Q 032655 83 EELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNC 122 (136)
Q Consensus 83 ~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~ 122 (136)
..+|++++|.......+...|....++..+|.++..+|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 9999999998765543333344556778999999998875
No 52
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.30 E-value=3.3e-11 Score=91.66 Aligned_cols=127 Identities=8% Similarity=-0.050 Sum_probs=101.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~ 86 (136)
+-.+...+...++++.|+-+.++++...| ++..++.+|.++...|+|.+|+..+++. .+.+.++.+++.+|.++..+|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 34456677788999999999999999999 7888999999999999999999988765 345677889999999999999
Q ss_pred Chhhhhhhhhhh--------------------------------------------hcccch--HhHHHHHHHHHHHHcC
Q 032655 87 SGTSVCRCSVML--------------------------------------------RLLKMI--SSAICFLRGKAYEALG 120 (136)
Q Consensus 87 ~~~ea~~~~~~~--------------------------------------------~~~~~~--~a~i~~l~G~~~~~~~ 120 (136)
++++|++..... +...|. .+.+++.+|.+|..+|
T Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 999986421100 001122 4667788899999999
Q ss_pred ChHHHHHHHHHhhcc
Q 032655 121 NCAQARLWLVSCDEF 135 (136)
Q Consensus 121 ~~~~A~~~y~~AL~~ 135 (136)
++++|+.+|+++++.
T Consensus 228 ~~~~A~~~~~~al~~ 242 (365)
T 4eqf_A 228 EFNRAIDAFNAALTV 242 (365)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998864
No 53
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.29 E-value=2.1e-11 Score=83.64 Aligned_cols=110 Identities=12% Similarity=0.026 Sum_probs=92.6
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChh
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
+-.-+...++|+.|+-+.++++.++| +++.++.+|.|+...|++++|+..+++. .+.+.++..++.+|.++.++|+++
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Confidence 44557788999999999999999999 8899999999999999999999988664 457789999999999999999999
Q ss_pred hhhhhh-hhhhcccchHhHHHHHHHHHHHHcCC
Q 032655 90 SVCRCS-VMLRLLKMISSAICFLRGKAYEALGN 121 (136)
Q Consensus 90 ea~~~~-~~~~~~~~~~a~i~~l~G~~~~~~~~ 121 (136)
+|.... ...+.-.|..+.++.++++++...|.
T Consensus 117 ~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 117 GRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp SHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 987643 33333335566778899999998885
No 54
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.29 E-value=1.9e-11 Score=90.52 Aligned_cols=120 Identities=9% Similarity=-0.010 Sum_probs=102.7
Q ss_pred HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655 16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
+...++++.|+-+.++++...| ++..++.+|.++...|++++|+..+++. ...+.++.+++.+|.++...|++++|.+
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 5667889999999999999999 7888999999999999999999988764 3356778899999999999999999987
Q ss_pred hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 94 CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 94 ~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.....+...|....+++.+|.+|..+|++++|+.+|+++++.
T Consensus 228 ~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 228 AYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 665433333445667889999999999999999999999863
No 55
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.29 E-value=3.8e-11 Score=97.63 Aligned_cols=127 Identities=9% Similarity=-0.064 Sum_probs=107.6
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~ 86 (136)
+..+-.-+...+++++|+-..++++.+.| +++.++.+|.++...|++++|+..+++. .+.+.+...++.+|.++.++|
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 105 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG 105 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 44556667788999999999999999999 7888999999999999999999988664 346678889999999999999
Q ss_pred ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc---CChHHHHHHHHHhhcc
Q 032655 87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL---GNCAQARLWLVSCDEF 135 (136)
Q Consensus 87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~---~~~~~A~~~y~~AL~~ 135 (136)
++++|.+.....+...|....+++.+|.++..+ |+.++|.+.|+++++.
T Consensus 106 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 106 QAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999998866554433344567788999999999 9999999999999864
No 56
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.29 E-value=1.6e-11 Score=96.93 Aligned_cols=120 Identities=6% Similarity=-0.064 Sum_probs=103.9
Q ss_pred HHHcCC-hhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhh
Q 032655 16 CVSKHL-YSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 16 ~l~~~~-~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
+...++ ++.|+-+.++++.++| ++..++.+|.++...|+|.+|+..+++. .+++.+..+++.+|.++..+|++++|+
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence 445686 9999999999999999 8889999999999999999999988665 457889999999999999999999999
Q ss_pred hhhhhhhcccchHhHHHHHHHHHHHH-cCChHHH-----HHHHHHhhcc
Q 032655 93 RCSVMLRLLKMISSAICFLRGKAYEA-LGNCAQA-----RLWLVSCDEF 135 (136)
Q Consensus 93 ~~~~~~~~~~~~~a~i~~l~G~~~~~-~~~~~~A-----~~~y~~AL~~ 135 (136)
+.....+...|....+++.+|.++.. .|..++| +.+|++||++
T Consensus 221 ~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l 269 (382)
T 2h6f_A 221 QYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL 269 (382)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 87766555456677889999999999 5554888 5999999864
No 57
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=2.6e-11 Score=88.96 Aligned_cols=127 Identities=13% Similarity=-0.021 Sum_probs=102.0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-C---hHHHHHHHHHHhc--------cCChHHHHHHHhcCc-ccccCcchH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-D---PADVYMQAQALFL--------GRHYRRPFHLLNSSK-IVLRDLRFR 75 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~---~~~~~~la~~l~~--------~g~~~~A~~~l~~~~-l~~~~~~~~ 75 (136)
+-.+-.-+...++|+.|+-+.++++...| + ++.++.+|.|++. .|++.+|+..+++.. ..+.++...
T Consensus 55 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 55 QFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence 33445567788999999999999999988 3 4468999999999 999999999887643 244555555
Q ss_pred -----------------HHHHHHHHHccChhhhhhhhhhhhc---ccchHhHHHHHHHHHHHHc----------CChHHH
Q 032655 76 -----------------YLAAKCLEELRSGTSVCRCSVMLRL---LKMISSAICFLRGKAYEAL----------GNCAQA 125 (136)
Q Consensus 76 -----------------~l~a~c~~~l~~~~ea~~~~~~~~~---~~~~~a~i~~l~G~~~~~~----------~~~~~A 125 (136)
+.+|.++++.|+|++|+......+. ..+....+++.+|.+|..+ |++++|
T Consensus 135 ~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A 214 (261)
T 3qky_A 135 DATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA 214 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence 8889999999999999986654333 2233667888999999988 899999
Q ss_pred HHHHHHhhcc
Q 032655 126 RLWLVSCDEF 135 (136)
Q Consensus 126 ~~~y~~AL~~ 135 (136)
+..|+++++.
T Consensus 215 ~~~~~~~~~~ 224 (261)
T 3qky_A 215 VELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999863
No 58
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=3.4e-11 Score=87.05 Aligned_cols=131 Identities=11% Similarity=-0.104 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccC-----C----ChHHHHHHHHHHhccCChHHHHHHHhcCcc--------
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALT-----N----DPADVYMQAQALFLGRHYRRPFHLLNSSKI-------- 67 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~-----~----~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-------- 67 (136)
...-+..+..-+...++++.|+-+.++++.+. + .+..+..+|.++...|++++|+.++++..-
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 34445667777888999999999999999884 2 344688899999999999999998866432
Q ss_pred -cccCcchHHHHHHHHHHccChhhhhhhhhhhh--------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 68 -VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR--------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 68 -~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~--------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+....+.+.+|.++..+|++++|++.....+ ...|..+.++..+|.+|..+|++++|+.+|++++++
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 14456788999999999999999987543221 124556777889999999999999999999999864
No 59
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.28 E-value=4.1e-11 Score=89.78 Aligned_cols=124 Identities=13% Similarity=-0.027 Sum_probs=70.7
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCCC-h------HHHHHHHHHHhccCChHHHHHHHhcCc-------c-cccCcchHH
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTND-P------ADVYMQAQALFLGRHYRRPFHLLNSSK-------I-VLRDLRFRY 76 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~~-~------~~~~~la~~l~~~g~~~~A~~~l~~~~-------l-~~~~~~~~~ 76 (136)
+...+...++++.|+...++++.+.+. + .....+|.+|+..|+|++|+.++++.. . .+....+.+
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 333444455666666666666665431 1 124556666666666666666554432 0 112223556
Q ss_pred HHHHHHHHccChhhhhhhhhhh------hcccchHhHHHHHHHHHHHHcCC-hHHHHHHHHHhhcc
Q 032655 77 LAAKCLEELRSGTSVCRCSVML------RLLKMISSAICFLRGKAYEALGN-CAQARLWLVSCDEF 135 (136)
Q Consensus 77 l~a~c~~~l~~~~ea~~~~~~~------~~~~~~~a~i~~l~G~~~~~~~~-~~~A~~~y~~AL~~ 135 (136)
.+|.++.++|+|++|++..... ....+..+.+++.+|.+|.++|+ +++|+++|++|+.+
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 6666666666666665433211 11223446677788888888885 58888888888764
No 60
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.28 E-value=5.2e-11 Score=91.39 Aligned_cols=78 Identities=10% Similarity=-0.118 Sum_probs=45.6
Q ss_pred HHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhh
Q 032655 16 CVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
+...++++.|+-+.++++.++| +++.++.+|.++...|++++|+..+++. .+.+.++..++.+|.++.+.|++++|++
T Consensus 179 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455666666666666666666 4555566666666666666666655433 2244455566666666666666666643
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.28 E-value=8.9e-12 Score=90.55 Aligned_cols=118 Identities=9% Similarity=-0.143 Sum_probs=99.4
Q ss_pred HcCChhhHHHHHHHHhccCC-----ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhh
Q 032655 18 SKHLYSSAIFFANEVAALTN-----DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 18 ~~~~~~~Alf~aekl~~~~~-----~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
..++++.|+-..++++...| ++..++.+|.+++..|++.+|+..+++. .+.+.++.+++.+|.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 35789999999999999853 3456899999999999999999988664 34567889999999999999999999
Q ss_pred hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++.....+...|....+++.+|.+|..+|++++|+.+|++++++
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 98665544334445678889999999999999999999999864
No 62
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.27 E-value=1.7e-11 Score=84.34 Aligned_cols=90 Identities=10% Similarity=0.018 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEE 84 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~ 84 (136)
+.+..+-..+...++|+.|+-+.++++.++| ++..++.+|.|++..|+|.+|+..+++. .+.+.+...++.+|.|+..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444555555556666666666666666666 5555566666666666666666655443 2244555556666666666
Q ss_pred ccChhhhhhhhh
Q 032655 85 LRSGTSVCRCSV 96 (136)
Q Consensus 85 l~~~~ea~~~~~ 96 (136)
+|++++|++...
T Consensus 92 ~g~~~~A~~~~~ 103 (164)
T 3sz7_A 92 MADYKGAKEAYE 103 (164)
T ss_dssp TTCHHHHHHHHH
T ss_pred ccCHHHHHHHHH
Confidence 666666655443
No 63
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.27 E-value=2.1e-11 Score=92.23 Aligned_cols=121 Identities=11% Similarity=0.016 Sum_probs=103.0
Q ss_pred HHHHcCChhhHHHHHHHHhccCCC---hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhh
Q 032655 15 DCVSKHLYSSAIFFANEVAALTND---PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTS 90 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~~---~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~e 90 (136)
.....++++.|+-+.++++...|+ +..++.+|.++...|++++|+..+++. .+.+.++.+++.+|.++..+|++++
T Consensus 190 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 344789999999999999999995 567889999999999999999988764 3356778899999999999999999
Q ss_pred hhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 91 VCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 91 a~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|++.....+...|....+++.+|.+|.++|++++|+.+|++++++
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 988665443333455677889999999999999999999999864
No 64
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.27 E-value=8.5e-11 Score=87.70 Aligned_cols=125 Identities=12% Similarity=-0.053 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccc---cCcchHHHH------
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVL---RDLRFRYLA------ 78 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~---~~~~~~~l~------ 78 (136)
..+..-+...++++.|+.+.++++...| ++..++.+|.++...|++++|+..+++. ...+ .++...+.+
T Consensus 41 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 120 (359)
T 3ieg_A 41 YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM 120 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH
Confidence 3444556677888888888888888888 6777888888888888888888877654 2234 445555444
Q ss_pred ------HHHHHHccChhhhhhhhhhh----------------------------------hcccchHhHHHHHHHHHHHH
Q 032655 79 ------AKCLEELRSGTSVCRCSVML----------------------------------RLLKMISSAICFLRGKAYEA 118 (136)
Q Consensus 79 ------a~c~~~l~~~~ea~~~~~~~----------------------------------~~~~~~~a~i~~l~G~~~~~ 118 (136)
|.++...|++++|++..... +...|....+++.+|.+|..
T Consensus 121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 67777788877775432111 11223445556666777777
Q ss_pred cCChHHHHHHHHHhhc
Q 032655 119 LGNCAQARLWLVSCDE 134 (136)
Q Consensus 119 ~~~~~~A~~~y~~AL~ 134 (136)
+|++++|+..|+++++
T Consensus 201 ~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 201 LGDHELSLSEVRECLK 216 (359)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 7777777777776664
No 65
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.26 E-value=1.2e-10 Score=76.43 Aligned_cols=98 Identities=13% Similarity=-0.033 Sum_probs=83.7
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY 116 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~ 116 (136)
+++.++.+|.+++..|+|.+|+..+++. .+.+.++.+++.+|.|+.++|+|++|++.....+...|.....++.+|.+|
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3567889999999999999999988664 446788899999999999999999999876654443455567889999999
Q ss_pred HHcCChHHHHHHHHHhhcc
Q 032655 117 EALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 117 ~~~~~~~~A~~~y~~AL~~ 135 (136)
..+|++++|+.+|++++++
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 66
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.26 E-value=6e-11 Score=78.80 Aligned_cols=131 Identities=13% Similarity=0.101 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC---Ch----HHHHHHHHHHhccCChHHHHHHHhcCc-cccc------
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN---DP----ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR------ 70 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~---~~----~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~------ 70 (136)
...-+..+-..+...+++++|+.+.++++.+.| ++ ...+.+|.+++..|+|.+|+..+++.. +.+.
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 87 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence 344456677778889999999999999999876 22 257789999999999999999886642 2122
Q ss_pred CcchHHHHHHHHHHccChhhhhhhhhhhh------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 71 DLRFRYLAAKCLEELRSGTSVCRCSVMLR------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 71 ~~~~~~l~a~c~~~l~~~~ea~~~~~~~~------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...+.+.+|.++..+|++++|.+.....+ ...+..+.++..+|.+|..+|++++|..+|++++++
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 24678899999999999999987543211 122345667779999999999999999999999874
No 67
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.26 E-value=4.9e-11 Score=83.12 Aligned_cols=127 Identities=9% Similarity=-0.022 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-c-----------------
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-V----------------- 68 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~----------------- 68 (136)
.+-.....++..++++.|+-..++++..+| +++.++.+|.++...|++++|+..+++..- .
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 344566777889999999999999999999 788899999999999999999988866421 1
Q ss_pred -----------------ccCcchHHHHHHHHHHccChhhhhhhhhhhhccc--chHhHHHHHHHHHHHHcCChHHHHHHH
Q 032655 69 -----------------LRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLK--MISSAICFLRGKAYEALGNCAQARLWL 129 (136)
Q Consensus 69 -----------------~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~--~~~a~i~~l~G~~~~~~~~~~~A~~~y 129 (136)
+.++..++.+|.++...|++++|.+.....+... +....++..+|.++..+|+.++|+.+|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2244566667777777777777766544333222 223557778888888888888888888
Q ss_pred HHhhc
Q 032655 130 VSCDE 134 (136)
Q Consensus 130 ~~AL~ 134 (136)
+++|.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
No 68
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.25 E-value=2.8e-10 Score=85.18 Aligned_cols=132 Identities=11% Similarity=-0.070 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHH-----HH-HHHHHHhccCChHHHHHHHhcCcc-cccC----
Q 032655 4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPAD-----VY-MQAQALFLGRHYRRPFHLLNSSKI-VLRD---- 71 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~-----~~-~la~~l~~~g~~~~A~~~l~~~~l-~~~~---- 71 (136)
+....+...+...+.+++|+.|+-..++++...| .++. ++ .+|.++...|+|.+|+..++++.- ....
T Consensus 73 ~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 4456677778899999999999999999999877 4442 33 379999999999999998866431 1111
Q ss_pred --cchHHHHHHHHHHccChhhhhhhhhhhh-------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 72 --LRFRYLAAKCLEELRSGTSVCRCSVMLR-------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 72 --~~~~~l~a~c~~~l~~~~ea~~~~~~~~-------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..+.+.+|.++..+|+|++|++.....+ ...+..+.+++.+|.+|..+|++++|+++|.+||++
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2378999999999999999987544322 223456778899999999999999999999999864
No 69
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.25 E-value=7.8e-11 Score=94.70 Aligned_cols=124 Identities=10% Similarity=-0.070 Sum_probs=71.0
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-------cccC-cchHHHHHHHH
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-------VLRD-LRFRYLAAKCL 82 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-------~~~~-~~~~~l~a~c~ 82 (136)
+..-+...|+++.|+.+.++++...| ++..+..+|.++...|++++|+.++++..- .+.. ...++.+|.++
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 33444555666666666666665555 455555666666666666666665544311 1111 34555666666
Q ss_pred HHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 83 EELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 83 ~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+.|++++|.+.....+...|....++..+|.+|..+|+.++|.++|++++++
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 66666666655443322222345566677777777788888888777777653
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=1.5e-11 Score=98.79 Aligned_cols=122 Identities=11% Similarity=0.033 Sum_probs=103.4
Q ss_pred HHHHHHcCCh-hhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHc----
Q 032655 13 VRDCVSKHLY-SSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEEL---- 85 (136)
Q Consensus 13 i~~~l~~~~~-~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l---- 85 (136)
-.-+...++| +.|+-+.++++.++| +++.++.+|.+++..|+|.+|+..+++.- +.+. ...++.+|.++..+
T Consensus 109 g~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~ 187 (474)
T 4abn_A 109 GKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDS 187 (474)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSC
T ss_pred HHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCC
Confidence 3445567899 999999999999999 78899999999999999999999887653 3334 68899999999999
Q ss_pred -----cChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc--------CChHHHHHHHHHhhcc
Q 032655 86 -----RSGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL--------GNCAQARLWLVSCDEF 135 (136)
Q Consensus 86 -----~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~--------~~~~~A~~~y~~AL~~ 135 (136)
|++++|++.....+...|....+++.+|.+|..+ |++++|+.+|++|+++
T Consensus 188 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 188 GDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 9999998876654443455677889999999999 9999999999999874
No 71
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.25 E-value=1.2e-10 Score=84.22 Aligned_cols=130 Identities=9% Similarity=-0.081 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccC--------C-ChHHHHHHHHHHhccCChHHHHHHHhcCc-c--------
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALT--------N-DPADVYMQAQALFLGRHYRRPFHLLNSSK-I-------- 67 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~--------~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l-------- 67 (136)
..-+..+..-+...++++.|+-+.++++.+. | .+..++.+|.+++..|++++|+.++++.. +
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 4445666777888999999999999999883 3 34468889999999999999999886642 2
Q ss_pred cccCcchHHHHHHHHHHccChhhhhhhhhhh---------------------------------------------h---
Q 032655 68 VLRDLRFRYLAAKCLEELRSGTSVCRCSVML---------------------------------------------R--- 99 (136)
Q Consensus 68 ~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~---------------------------------------------~--- 99 (136)
.+....+.+.+|.++..+|++++|.+..... .
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 2345578899999999999999996421100 0
Q ss_pred -cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 100 -LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 100 -~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...|....++..+|.+|..+|++++|..+|++|+++
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 012455667779999999999999999999999975
No 72
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.24 E-value=2e-11 Score=99.28 Aligned_cols=117 Identities=9% Similarity=-0.096 Sum_probs=84.7
Q ss_pred cCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655 19 KHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
.++++.|+-+.++++..+| +++.++.+|.++...|+|++|+..+++. .+.+.+...++.+|.++..+|++++|.+...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4789999999999999999 7888999999999999999999988664 4467788999999999999999999988665
Q ss_pred hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 97 MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 97 ~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..+...|.....++.+|.+|..+|++++|+++|++++++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 544334555678889999999999999999999999874
No 73
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.24 E-value=7.7e-11 Score=90.83 Aligned_cols=129 Identities=6% Similarity=-0.101 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-C---------------hHHHHHHHHHHhccCChHHHHHHHhcC-ccc
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-D---------------PADVYMQAQALFLGRHYRRPFHLLNSS-KIV 68 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~---------------~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~ 68 (136)
...+..+-..+...++|+.|+-..++++.+.| + ...++.+|.|++..|+|.+|+..+++. .+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44566667778889999999999999999999 4 367899999999999999999988665 446
Q ss_pred ccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHH-HHHHHHhhc
Q 032655 69 LRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQA-RLWLVSCDE 134 (136)
Q Consensus 69 ~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A-~~~y~~AL~ 134 (136)
+.++..++.+|.++..+|+|++|+......+...|....++..+|.++..+|+.++| ...|++.+.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999876654433444566788999999999999999 667777664
No 74
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.24 E-value=2.9e-11 Score=85.34 Aligned_cols=63 Identities=19% Similarity=0.067 Sum_probs=54.3
Q ss_pred chHHHHHHHHHHccChhhhhhhhhhhhcc-------cchHhHHH----HHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 73 RFRYLAAKCLEELRSGTSVCRCSVMLRLL-------KMISSAIC----FLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 73 ~~~~l~a~c~~~l~~~~ea~~~~~~~~~~-------~~~~a~i~----~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+++..|.|+.++|+|+||++.....+.- .|..+..+ +.+|.++..+|++++|+.+|++||++
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 49999999999999999998765543332 56777888 99999999999999999999999975
No 75
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.24 E-value=6.7e-11 Score=93.62 Aligned_cols=127 Identities=11% Similarity=-0.065 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~ 86 (136)
-+..+-..+...++++.|+-+.++++...|++..++.+|.++...|++.+|+..+++. ...+.++.+++.+|.++..+|
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Confidence 3445555666777777777777777777777667777777777777777777776553 234566677777777777777
Q ss_pred Chhhhhhhhh----------------------------------hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 87 SGTSVCRCSV----------------------------------MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 87 ~~~ea~~~~~----------------------------------~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
++++|++... ..+...|....+++.+|.++..+|++++|+.+|+++
T Consensus 325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7777753211 111122444556677788888888888888888877
Q ss_pred hc
Q 032655 133 DE 134 (136)
Q Consensus 133 L~ 134 (136)
++
T Consensus 405 ~~ 406 (537)
T 3fp2_A 405 KR 406 (537)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 76
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.23 E-value=1.4e-10 Score=91.81 Aligned_cols=93 Identities=14% Similarity=0.032 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA 118 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~ 118 (136)
..++.+|.++...|++.+|+..+++..- .+. +..++.+|.++...|++++|++.....+...|....+++.+|.+|..
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 4578899999999999999998876533 334 78899999999999999999764432222122233334444555555
Q ss_pred cCChHHHHHHHHHhh
Q 032655 119 LGNCAQARLWLVSCD 133 (136)
Q Consensus 119 ~~~~~~A~~~y~~AL 133 (136)
+|++++|+..|++++
T Consensus 323 ~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQ 337 (537)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 555555555555444
No 77
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.23 E-value=1.5e-10 Score=84.25 Aligned_cols=85 Identities=7% Similarity=-0.132 Sum_probs=57.2
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCCChH----HHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHc
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTNDPA----DVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~~~~----~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l 85 (136)
.+..-+...+++++|+.+.++++...++++ .++.+|.++...|++++|+..+++. ...+.++..++.+|.++..+
T Consensus 42 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 121 (272)
T 3u4t_A 42 RRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNK 121 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence 344456667777777777777777332333 3677777777777777777777553 33456667777777777777
Q ss_pred cChhhhhhhh
Q 032655 86 RSGTSVCRCS 95 (136)
Q Consensus 86 ~~~~ea~~~~ 95 (136)
|++++|++..
T Consensus 122 ~~~~~A~~~~ 131 (272)
T 3u4t_A 122 GNFPLAIQYM 131 (272)
T ss_dssp TCHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 7777776543
No 78
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.22 E-value=7.6e-11 Score=83.34 Aligned_cols=127 Identities=10% Similarity=-0.058 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-Ch----------------HHHHHHHHHHhccCChHHHHHHHhcC-c
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DP----------------ADVYMQAQALFLGRHYRRPFHLLNSS-K 66 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~----------------~~~~~la~~l~~~g~~~~A~~~l~~~-~ 66 (136)
..+.+..+-..+...++|+.|+-+.++++.+.| ++ ..++.+|.|++..|+|.+|+..+++. .
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 455677777888899999999999999999998 55 67888999999999999999988664 3
Q ss_pred ccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHH-HHHHH
Q 032655 67 IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQAR-LWLVS 131 (136)
Q Consensus 67 l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~-~~y~~ 131 (136)
+.+.+..+++.+|.++..+|+|++|.+.....+...|....+...+|.++..+++.+++. ..|+.
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 182 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGG 182 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--------
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788999999999999999999988665444333445667788899999998888877 44443
No 79
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.22 E-value=3.3e-11 Score=76.00 Aligned_cols=100 Identities=11% Similarity=0.204 Sum_probs=81.4
Q ss_pred CC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccch--HhHHHHH
Q 032655 36 TN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMI--SSAICFL 111 (136)
Q Consensus 36 ~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~--~a~i~~l 111 (136)
+| +++.++.+|.+++..|++.+|+..+++. ...+.+...++.+|.++..+|++++|+......+...|. ...+++.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 46 5677888999999999999999988664 335567788899999999999999998766544433344 5678889
Q ss_pred HHHHHHHc-CChHHHHHHHHHhhcc
Q 032655 112 RGKAYEAL-GNCAQARLWLVSCDEF 135 (136)
Q Consensus 112 ~G~~~~~~-~~~~~A~~~y~~AL~~ 135 (136)
+|.++..+ |++++|+++|+++++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 99999999 9999999999998864
No 80
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.22 E-value=4.7e-11 Score=78.03 Aligned_cols=83 Identities=8% Similarity=-0.043 Sum_probs=42.0
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-Ch---HHHHHHHHHHhccCChHHHHHHHhcCc-ccccC---cchHHHHHHHHHHc
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-DP---ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD---LRFRYLAAKCLEEL 85 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-~~---~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~---~~~~~l~a~c~~~l 85 (136)
..+...++|+.|+...++++...| ++ +.++.+|.+++..|+|.+|+..+++.. ..+.+ +...+.+|.|+.++
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 344455555555555555555555 33 345555555555555555555544321 12333 34455555555555
Q ss_pred cChhhhhhhhh
Q 032655 86 RSGTSVCRCSV 96 (136)
Q Consensus 86 ~~~~ea~~~~~ 96 (136)
|++++|.+...
T Consensus 90 g~~~~A~~~~~ 100 (129)
T 2xev_A 90 GKNTEAQQTLQ 100 (129)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55555554433
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.22 E-value=1.1e-10 Score=85.70 Aligned_cols=130 Identities=10% Similarity=-0.058 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccC-----C----ChHHHHHHHHHHhccCChHHHHHHHhcCc-c--------
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALT-----N----DPADVYMQAQALFLGRHYRRPFHLLNSSK-I-------- 67 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~-----~----~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l-------- 67 (136)
..-+..+..-+...++++.|+-+.++++.+. + ....++.+|.++...|++++|+.++++.. +
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 3445566677888999999999999999885 2 23457889999999999999999886642 1
Q ss_pred cccCcchHHHHHHHHHHccChhhhhhhhhhhh------------------------------------------------
Q 032655 68 VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR------------------------------------------------ 99 (136)
Q Consensus 68 ~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~------------------------------------------------ 99 (136)
.+....+.+.+|.++..+|++++|.+.....+
T Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 270 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC 270 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc
Confidence 23455688999999999999999964221000
Q ss_pred -cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 100 -LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 100 -~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...|..+.+++.+|.+|..+|++++|..+|++|+++
T Consensus 271 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 271 KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 012556677889999999999999999999999874
No 82
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.21 E-value=2.8e-10 Score=85.22 Aligned_cols=123 Identities=13% Similarity=-0.003 Sum_probs=90.4
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCC---C----hHHHHHHHHHHhccCChHHHHHHHhcCc-c---ccc----CcchHHH
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTN---D----PADVYMQAQALFLGRHYRRPFHLLNSSK-I---VLR----DLRFRYL 77 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~---~----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l---~~~----~~~~~~l 77 (136)
...+...++++.|+...++++...+ + ....+.+|.+|+..|+|++|+.+++++. + .+. ...+.+.
T Consensus 122 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 122 AAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence 3445667799999999999887664 1 2356788999999999999988886642 1 111 1258889
Q ss_pred HHHHHHHccChhhhhhhhhhhh------cccchHhHHHHHHHHHHHHcCChHHH-HHHHHHhhcc
Q 032655 78 AAKCLEELRSGTSVCRCSVMLR------LLKMISSAICFLRGKAYEALGNCAQA-RLWLVSCDEF 135 (136)
Q Consensus 78 ~a~c~~~l~~~~ea~~~~~~~~------~~~~~~a~i~~l~G~~~~~~~~~~~A-~~~y~~AL~~ 135 (136)
.|.++.++|+|++|++.....+ +.....+.+++.+|.+|.++|++++| ..+|++|+.+
T Consensus 202 lg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 202 HAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 9999999999999986543221 11233567788999999999999999 7889998864
No 83
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.21 E-value=1.4e-10 Score=78.27 Aligned_cols=93 Identities=14% Similarity=0.088 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL 82 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~ 82 (136)
-.+.+..+...+...++|+.|+-+.++++...| ++..++.+|.|+...|+|++|+..+++. .+.+.++..++.+|.|+
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 345566677788899999999999999999999 8889999999999999999999988664 44678999999999999
Q ss_pred HHccChhhhhhhhhh
Q 032655 83 EELRSGTSVCRCSVM 97 (136)
Q Consensus 83 ~~l~~~~ea~~~~~~ 97 (136)
..+|++++|......
T Consensus 97 ~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 97 LQLGDLDGAESGFYS 111 (142)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 999999999876543
No 84
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.21 E-value=3.2e-10 Score=87.98 Aligned_cols=130 Identities=10% Similarity=-0.056 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~ 83 (136)
.+.+..+...+...++++.|+-+.++++...| ++..++.+|.+++..|++.+|+..+++. ...+.+..+++.+|.++.
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 44566778888999999999999999999999 7889999999999999999999988764 335677889999999999
Q ss_pred HccChhhhhhhhhhhhcccchHh---H------------HHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 84 ELRSGTSVCRCSVMLRLLKMISS---A------------ICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 84 ~l~~~~ea~~~~~~~~~~~~~~a---~------------i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+|++++|.......+...|... . ..+.+|.++...|++++|+.+|.++++.
T Consensus 106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 172 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999875543322112111 1 2446688899999999999999998863
No 85
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.21 E-value=4e-10 Score=85.17 Aligned_cols=126 Identities=10% Similarity=-0.043 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhcc--CC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAAL--TN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCL 82 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~--~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~ 82 (136)
..-++.+...+...++++.|+-..+++++. +| ++..++.+|.++...|++++|+..+++ +.++.+++..|.++
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~ 140 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQIL 140 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 456778888888999999999999999876 48 777899999999999999999999987 57889999999999
Q ss_pred HHccChhhhhhhhh-----------------h-h------------------hcccchHhHHHHHHHHHHHHcCChHHHH
Q 032655 83 EELRSGTSVCRCSV-----------------M-L------------------RLLKMISSAICFLRGKAYEALGNCAQAR 126 (136)
Q Consensus 83 ~~l~~~~ea~~~~~-----------------~-~------------------~~~~~~~a~i~~l~G~~~~~~~~~~~A~ 126 (136)
.++|++++|..... + . +...|....+++.+|.++..+|++++|.
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999853110 0 0 0123556677889999999999999999
Q ss_pred HHHHHhhcc
Q 032655 127 LWLVSCDEF 135 (136)
Q Consensus 127 ~~y~~AL~~ 135 (136)
..|++||+.
T Consensus 221 ~~l~~al~~ 229 (291)
T 3mkr_A 221 GVLQEALDK 229 (291)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999864
No 86
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.20 E-value=2.3e-11 Score=80.73 Aligned_cols=96 Identities=7% Similarity=-0.154 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA 118 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~ 118 (136)
..++.+|.+++..|++.+|+..+++. ...+.+...++.+|.++..+|++++|+......+...|....+++.+|.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46888999999999999999988665 34677888999999999999999999876655443344556678899999999
Q ss_pred cCChHHHHHHHHHhhcc
Q 032655 119 LGNCAQARLWLVSCDEF 135 (136)
Q Consensus 119 ~~~~~~A~~~y~~AL~~ 135 (136)
+|++++|+.+|++++++
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999999864
No 87
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.20 E-value=2.6e-10 Score=88.49 Aligned_cols=127 Identities=12% Similarity=-0.067 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHH--------
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLA-------- 78 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~-------- 78 (136)
+..+..-+...++++.|+-+.++++..+| ++..++.+|.++...|++.+|+..+++. .+.+.+..+...+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 33445555666666666666666666666 5566666666666666666666666443 2233444444444
Q ss_pred ----HHHHHHccChhhhhh--------------------------------------hhhhhhcccchHhHHHHHHHHHH
Q 032655 79 ----AKCLEELRSGTSVCR--------------------------------------CSVMLRLLKMISSAICFLRGKAY 116 (136)
Q Consensus 79 ----a~c~~~l~~~~ea~~--------------------------------------~~~~~~~~~~~~a~i~~l~G~~~ 116 (136)
|.++...|++++|.+ .....+...|....+++.+|.+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 666666666666542 22111112244556777888888
Q ss_pred HHcCChHHHHHHHHHhhcc
Q 032655 117 EALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 117 ~~~~~~~~A~~~y~~AL~~ 135 (136)
..+|++++|+.+|++++++
T Consensus 340 ~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 8888888888888888764
No 88
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.1e-10 Score=91.51 Aligned_cols=125 Identities=8% Similarity=-0.099 Sum_probs=68.7
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccCh
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSG 88 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~ 88 (136)
.+..-+...++++.|+.+.++++...| ++..++.+|.++...|++.+|+..+++. ...+.++..++.+|.++...|++
T Consensus 309 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 309 HRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCH
Confidence 334444555566666666666655555 4555555555666666665555555442 12334455555555555555555
Q ss_pred hhhh-------------------------------------------hhhhhhhcccchHhHHHHHHHHHHHHcCChHHH
Q 032655 89 TSVC-------------------------------------------RCSVMLRLLKMISSAICFLRGKAYEALGNCAQA 125 (136)
Q Consensus 89 ~ea~-------------------------------------------~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A 125 (136)
++|. ......+...|....+++.+|.+|..+|++++|
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHH
Confidence 5554 322221111233445566777777777777777
Q ss_pred HHHHHHhhcc
Q 032655 126 RLWLVSCDEF 135 (136)
Q Consensus 126 ~~~y~~AL~~ 135 (136)
+.+|++++++
T Consensus 469 ~~~~~~a~~~ 478 (514)
T 2gw1_A 469 ITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777653
No 89
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.19 E-value=2.5e-10 Score=87.96 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=39.0
Q ss_pred HHHcCChhhHHHHHHHHhccC---CC----hHHHHHHHHHHhccCChHHHHHHHhcCc-cccc-------CcchHHHHHH
Q 032655 16 CVSKHLYSSAIFFANEVAALT---ND----PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR-------DLRFRYLAAK 80 (136)
Q Consensus 16 ~l~~~~~~~Alf~aekl~~~~---~~----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~-------~~~~~~l~a~ 80 (136)
+...++|+.|+.+.++++.+. |+ +...+.+|.+++..|++.+|+..++++. +.+. ...+.+.+|.
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 192 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFAT 192 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 344556666666666655542 21 2235555666666666655555543321 1111 1235555555
Q ss_pred HHHHccChhhhhh
Q 032655 81 CLEELRSGTSVCR 93 (136)
Q Consensus 81 c~~~l~~~~ea~~ 93 (136)
++..+|+|++|++
T Consensus 193 ~~~~~g~~~~A~~ 205 (383)
T 3ulq_A 193 NFLDLKQYEDAIS 205 (383)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHhcCHHHHHH
Confidence 6666666655543
No 90
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.19 E-value=3.3e-10 Score=71.78 Aligned_cols=112 Identities=11% Similarity=-0.096 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~ 83 (136)
.+.+..+...+...+++++|+-+.++++...| ++..++.+|.+++..|+|.+|+..+++. ...+.++.+.+.+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 34566677777888888888888888888888 7777888888888888888888877654 334567778888888888
Q ss_pred HccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655 84 ELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE 117 (136)
Q Consensus 84 ~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~ 117 (136)
.+|++++|.+.....+...|....++..+|.+.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 8888888877655433333444455566666543
No 91
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.19 E-value=5.8e-11 Score=81.44 Aligned_cols=116 Identities=10% Similarity=-0.090 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhcc------------------CC-ChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAAL------------------TN-DPADVYMQAQALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~------------------~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~ 65 (136)
..+.++..-..+...++|+.|+-..++++.+ .| .+..++.+|.|++..|+|.+|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3455666667777788888888888888877 22 2234666777777777777777766443
Q ss_pred -cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHh-HHHHHHHHHHHHcC
Q 032655 66 -KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISS-AICFLRGKAYEALG 120 (136)
Q Consensus 66 -~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a-~i~~l~G~~~~~~~ 120 (136)
.+++.++.+++.+|.|+..+|+|++|.......+...|... .+...++.+.+.++
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~ 146 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRA 146 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 33566677777777777777777777765543332222222 44445555555443
No 92
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=1.6e-10 Score=84.89 Aligned_cols=132 Identities=11% Similarity=-0.053 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHhcc--------CC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-------
Q 032655 4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAAL--------TN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI------- 67 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~--------~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l------- 67 (136)
+..+-+..+...+...++++.|+.+.++++.+ .| .+..++.+|.++...|++++|+..+++..-
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34556778888899999999999999999986 23 455688899999999999999998866431
Q ss_pred --cccCcchHHHHHHHHHHccChhhhhhhhhhhh--------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 68 --VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR--------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 68 --~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~--------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+....+.+.+|.++..+|++++|.+.....+ ...+..+.++..+|.+|..+|++++|+++|++++++
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 13456788999999999999999987543211 123556777889999999999999999999999874
No 93
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.18 E-value=3e-10 Score=89.13 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHH
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKC 81 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c 81 (136)
.+..+.+...-..+...++|+.|+-..++++...|++..++.+|.|++..|+|++|+..+++. .+.+.++.+++.+|.+
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 456677888888999999999999999999999999999999999999999999999988764 3467788899999999
Q ss_pred HHHccChhhhhh
Q 032655 82 LEELRSGTSVCR 93 (136)
Q Consensus 82 ~~~l~~~~ea~~ 93 (136)
+..+|++++|..
T Consensus 83 ~~~~g~~~~A~~ 94 (514)
T 2gw1_A 83 NEGLGKFADAMF 94 (514)
T ss_dssp HHHTTCHHHHHH
T ss_pred HHHHhhHHHHHH
Confidence 999999999964
No 94
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.18 E-value=2.9e-10 Score=87.60 Aligned_cols=129 Identities=9% Similarity=-0.008 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-C-------hHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCc-----
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-D-------PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDL----- 72 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~-------~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~----- 72 (136)
.-+..+-.-+...++++.|+.+.++++.+.+ . ......+|.++...|+|++|+..++++. +.+...
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 4455566677788999999999999999875 2 1247789999999999999999886643 222222
Q ss_pred -chHHHHHHHHHHccChhhhhhhhhhhhc-----cc-chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 73 -RFRYLAAKCLEELRSGTSVCRCSVMLRL-----LK-MISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 73 -~~~~l~a~c~~~l~~~~ea~~~~~~~~~-----~~-~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+++.+|.|+..+|++++|++.....+. .. |..+.+++.+|.+|..+|++++|..+|++|+++
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4889999999999999999998777666 44 777778889999999999999999999999874
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.17 E-value=5.1e-10 Score=80.86 Aligned_cols=124 Identities=15% Similarity=0.011 Sum_probs=97.3
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-Ch---HHHHHHHHHHhc------------------cCChHHHHHHHhcCc-c
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DP---ADVYMQAQALFL------------------GRHYRRPFHLLNSSK-I 67 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~---~~~~~la~~l~~------------------~g~~~~A~~~l~~~~-l 67 (136)
.+..-+...++|+.|+-..++++..+| ++ ..++.+|.+++. .|++.+|+..+++.- .
T Consensus 46 ~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 46 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 344566778999999999999999999 44 368899999986 678999999886642 2
Q ss_pred cccCcchH-----------------HHHHHHHHHccChhhhhhhhhhhhc---ccchHhHHHHHHHHHHHHcCChHHHHH
Q 032655 68 VLRDLRFR-----------------YLAAKCLEELRSGTSVCRCSVMLRL---LKMISSAICFLRGKAYEALGNCAQARL 127 (136)
Q Consensus 68 ~~~~~~~~-----------------~l~a~c~~~l~~~~ea~~~~~~~~~---~~~~~a~i~~l~G~~~~~~~~~~~A~~ 127 (136)
.|.++... +..|.++++.|+|++|+......+. +.+....+++.+|.+|.++|+.++|+.
T Consensus 126 ~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 126 YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 34444333 6789999999999999886654333 233455678899999999999999999
Q ss_pred HHHHhhc
Q 032655 128 WLVSCDE 134 (136)
Q Consensus 128 ~y~~AL~ 134 (136)
.|+.++.
T Consensus 206 ~~~~l~~ 212 (225)
T 2yhc_A 206 VAKIIAA 212 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998764
No 96
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.17 E-value=8.9e-11 Score=76.32 Aligned_cols=98 Identities=13% Similarity=0.014 Sum_probs=82.7
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY 116 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~ 116 (136)
++..++.+|.+++..|+|.+|+..+++. ...+.+..+++.+|.++..+|++++|+......+...|....+++.+|.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4567999999999999999999988664 345678899999999999999999998866544433345667888999999
Q ss_pred HHcCChHHHHHHHHHhhcc
Q 032655 117 EALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 117 ~~~~~~~~A~~~y~~AL~~ 135 (136)
..+|++++|+.+|+++++.
T Consensus 95 ~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 97
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.17 E-value=1.8e-10 Score=73.02 Aligned_cols=97 Identities=7% Similarity=-0.099 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE 117 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~ 117 (136)
++.++.+|.+++..|+|.+|+..+++. ...+.++..++..|.|+..+|++++|.+.....+...|....+++.+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 567889999999999999999988765 3356788899999999999999999987665443333445677889999999
Q ss_pred HcCChHHHHHHHHHhhcc
Q 032655 118 ALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 118 ~~~~~~~A~~~y~~AL~~ 135 (136)
.+|++++|..+|+++++.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999999875
No 98
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.17 E-value=1.4e-09 Score=81.40 Aligned_cols=131 Identities=11% Similarity=-0.042 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChH------HHHHHHHHHhccCChHHHHHHHhcCc-cccc------
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPA------DVYMQAQALFLGRHYRRPFHLLNSSK-IVLR------ 70 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~------~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~------ 70 (136)
.++.+...+..++.+++|+.|+-..++.+...| .++ ..+.+|.++...|+|++|+..++++- ....
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345666778889999999999999999998877 332 25668899999999999999876532 1111
Q ss_pred CcchHHHHHHHHHHccChhhhhhhhhhhh---c--c-cc-hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 71 DLRFRYLAAKCLEELRSGTSVCRCSVMLR---L--L-KM-ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 71 ~~~~~~l~a~c~~~l~~~~ea~~~~~~~~---~--~-~~-~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...+.+.+|.++..+|+|++|++.....+ . + .+ ....+++.+|.+|..+|++++|+.+|++|+++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 13478899999999999999987544322 1 1 11 23367889999999999999999999999864
No 99
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.16 E-value=2.4e-10 Score=79.31 Aligned_cols=94 Identities=11% Similarity=0.132 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL 82 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~ 82 (136)
-.+.+..+-..+...|+|++|+-+.++++.++| +++.++.+|.|+...|+|++|+..+++. .+.|.++..++.+|.|+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 344566667778889999999999999999999 8999999999999999999999988665 55788999999999999
Q ss_pred HHccChhhhhhhhhhh
Q 032655 83 EELRSGTSVCRCSVML 98 (136)
Q Consensus 83 ~~l~~~~ea~~~~~~~ 98 (136)
.++|++++|+......
T Consensus 115 ~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 115 LRLKAPLKAKECFELV 130 (151)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999998866543
No 100
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.16 E-value=6.9e-10 Score=70.83 Aligned_cols=114 Identities=12% Similarity=0.053 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHH
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEE 84 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~ 84 (136)
.-+..+...+...++++.|+-+.++++...| ++..++.+|.+++..|++++|+..+++.. ..+.++...+.+|.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 3455566677788888888888888888888 66778888888888888888888776542 244566777888888888
Q ss_pred ccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC
Q 032655 85 LRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG 120 (136)
Q Consensus 85 l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~ 120 (136)
+|++++|.......+...|....+...+|.++..+|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888877554433333445556677788776654
No 101
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.15 E-value=9.8e-12 Score=95.89 Aligned_cols=116 Identities=13% Similarity=0.009 Sum_probs=94.4
Q ss_pred CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccC---------------cchHHHHHHHH
Q 032655 20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRD---------------LRFRYLAAKCL 82 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~---------------~~~~~l~a~c~ 82 (136)
..++.|+-..++.....| .+..++.+|.+++..|+|.+|+..+++. .+.+.+ ..+++.+|.|+
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666677 6678999999999999999999988665 334555 48999999999
Q ss_pred HHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 83 EELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 83 ~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.++|+|++|++.....+...|....+++.+|.+|..+|++++|+.+|++||++
T Consensus 207 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999998766544434556678899999999999999999999999875
No 102
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.15 E-value=1.4e-10 Score=74.93 Aligned_cols=95 Identities=5% Similarity=-0.064 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcc-------cchHhHHHHH
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLL-------KMISSAICFL 111 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~-------~~~~a~i~~l 111 (136)
+.++.+|.+++..|+|.+|+..+++. ...+.++.+.+.+|.++...|++++|++.....+.. .+....+++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44556666666666666666655443 223445556666666666666666665433221110 0112556667
Q ss_pred HHHHHHHcCChHHHHHHHHHhhc
Q 032655 112 RGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 112 ~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+|.+|..+|++++|+.+|+++++
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 77777777777777777777765
No 103
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.13 E-value=4.1e-10 Score=77.07 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCL 82 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~ 82 (136)
..+.+..+...+...++|+.|+-..++++...| ++..++.+|.|+...|+|++|+..+++. .+.+.++..++.+|.|+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 344556677788899999999999999999999 8889999999999999999999988665 44678999999999999
Q ss_pred HHccChhhhhhhhhh
Q 032655 83 EELRSGTSVCRCSVM 97 (136)
Q Consensus 83 ~~l~~~~ea~~~~~~ 97 (136)
..+|++++|++....
T Consensus 100 ~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 100 LQXGELAEAESGLFL 114 (148)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 999999999876543
No 104
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3e-10 Score=75.18 Aligned_cols=98 Identities=16% Similarity=0.099 Sum_probs=62.5
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccC---cchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD---LRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRG 113 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~---~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G 113 (136)
+.+.++.+|.+++..|+|.+|+..+++.. ..+.+ ..+++.+|.|+..+|+|++|++.....+...|....+++.+|
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 34556777777777777777777665532 22333 566677777777777777776654433222233455666777
Q ss_pred HHHHHcCChHHHHHHHHHhhcc
Q 032655 114 KAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 114 ~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+|..+|++++|+.+|++++++
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 7777777777777777777653
No 105
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.12 E-value=6.6e-10 Score=76.21 Aligned_cols=98 Identities=10% Similarity=0.024 Sum_probs=84.1
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY 116 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~ 116 (136)
+++.++.+|.+++..|+|.+|+..+++. .+.+.++.+++.+|.|++.+|+|++|++.....+...|....+++.+|.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567899999999999999999988664 346678899999999999999999999876654443455677889999999
Q ss_pred HHcCChHHHHHHHHHhhcc
Q 032655 117 EALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 117 ~~~~~~~~A~~~y~~AL~~ 135 (136)
..+|++++|+.+|++++++
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 106
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.12 E-value=4.6e-10 Score=86.30 Aligned_cols=132 Identities=11% Similarity=0.033 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-Ch----HHHHHHHHHHhccCChHHHHHHHhcCc-c------cccC
Q 032655 4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DP----ADVYMQAQALFLGRHYRRPFHLLNSSK-I------VLRD 71 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~----~~~~~la~~l~~~g~~~~A~~~l~~~~-l------~~~~ 71 (136)
.....+..+-..+...++|++|+-+.++++.+.| ++ ..++.+|.+++..|+|.+|+..+++.. + .+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3444566677788899999999999999999998 55 357889999999999999999876542 1 2455
Q ss_pred cchHHHHHHHHHHccChhhhhhhhhhh------hcccchHhHHHHHHHHHHHHcCC-----------------hHHHHHH
Q 032655 72 LRFRYLAAKCLEELRSGTSVCRCSVML------RLLKMISSAICFLRGKAYEALGN-----------------CAQARLW 128 (136)
Q Consensus 72 ~~~~~l~a~c~~~l~~~~ea~~~~~~~------~~~~~~~a~i~~l~G~~~~~~~~-----------------~~~A~~~ 128 (136)
..+++.+|.++..+|++++|.+..... ..+.+..+.++..+|.+|..+|+ +++|+++
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 678999999999999999998754322 11234566778899999999999 9999999
Q ss_pred HHHhhcc
Q 032655 129 LVSCDEF 135 (136)
Q Consensus 129 y~~AL~~ 135 (136)
|++++++
T Consensus 206 ~~~al~~ 212 (411)
T 4a1s_A 206 YQENLKL 212 (411)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
No 107
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.11 E-value=6e-10 Score=81.88 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC---Ch----HHHHHHHHHHhccCChHHHHHHHhcCc-ccccC------cc
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN---DP----ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD------LR 73 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~---~~----~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~------~~ 73 (136)
-+..+..-+...++++.|+-+.++++.+.| ++ ..++.+|.++...|++.+|+..+++.. +.+.. ..
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 264 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence 344556667788999999999999998875 22 258889999999999999999886642 22222 56
Q ss_pred hHHHHHHHHHHccChhhhhhhhhhh------hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 74 FRYLAAKCLEELRSGTSVCRCSVML------RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 74 ~~~l~a~c~~~l~~~~ea~~~~~~~------~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.+.+|.++..+|++++|....... ....+..+.++..+|.+|..+|++++|..+|++|+++
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7889999999999999998754321 1123445667789999999999999999999999975
No 108
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.11 E-value=4.3e-11 Score=96.63 Aligned_cols=116 Identities=12% Similarity=-0.030 Sum_probs=93.8
Q ss_pred HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhh
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
.+..+++|++|+-..++++.+.| ++..++.+|.+++..|+|++|+..+++. .+.+.++..++.+|.++.++|++++|+
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34568999999999999999999 7889999999999999999999988664 446788899999999999999999998
Q ss_pred hhhhhhhcccchHhHHHHHHHHH--HHHcCChHHHHHHHH
Q 032655 93 RCSVMLRLLKMISSAICFLRGKA--YEALGNCAQARLWLV 130 (136)
Q Consensus 93 ~~~~~~~~~~~~~a~i~~l~G~~--~~~~~~~~~A~~~y~ 130 (136)
+.....+...|....++..+|.+ +.++|++++|++.|+
T Consensus 95 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 86654433334445566778888 899999999999999
No 109
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.11 E-value=6.6e-10 Score=84.50 Aligned_cols=128 Identities=13% Similarity=0.064 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChH------HHHHHHHHHhccCChHHHHHHHhcCc-ccccC------cc
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPA------DVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD------LR 73 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~------~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~------~~ 73 (136)
-+..+..-+...++++.|+-+.++++.+.| .++ .++.+|.++...|++++|+..+++.. +.+.. ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 345556677788999999999999998876 222 57889999999999999999886642 22222 56
Q ss_pred hHHHHHHHHHHccChhhhhhhhhhh------hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 74 FRYLAAKCLEELRSGTSVCRCSVML------RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 74 ~~~l~a~c~~~l~~~~ea~~~~~~~------~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.+.+|.++...|++++|....... ....+..+.++..+|.+|..+|++++|+.+|++|+++
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7889999999999999998754321 1123445667789999999999999999999999874
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.11 E-value=8.3e-11 Score=98.55 Aligned_cols=118 Identities=10% Similarity=-0.123 Sum_probs=103.4
Q ss_pred HHcCChhhHHHHHHHHh--------ccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc
Q 032655 17 VSKHLYSSAIFFANEVA--------ALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR 86 (136)
Q Consensus 17 l~~~~~~~Alf~aekl~--------~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~ 86 (136)
+..++++.|+-..++++ ..+| +++.++.+|.+++..|+|++|+..+++. .+.+.+...++.+|.++..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 67899999999999999 8888 7888999999999999999999988665 346788899999999999999
Q ss_pred ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 87 SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 87 ~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+|++|++.....+...|.....++.+|.+|..+|++++ +++|++||++
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST 529 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence 99999987766554445667788999999999999999 9999999864
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.11 E-value=2.1e-10 Score=82.20 Aligned_cols=98 Identities=7% Similarity=-0.053 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHH----------------HHHHHHHccChhhhhhhhhhhhc
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYL----------------AAKCLEELRSGTSVCRCSVMLRL 100 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l----------------~a~c~~~l~~~~ea~~~~~~~~~ 100 (136)
+++.++..|..++..|+|.+|+..+++. .+.+.++..++. +|.++.++|++++|+......+.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5678899999999999999999988765 346678888888 99999999999999987665544
Q ss_pred ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 101 LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 101 ~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..|....+++.+|.+|..+|++++|+.+|+++|++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44566778899999999999999999999999874
No 112
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.10 E-value=7.7e-10 Score=88.65 Aligned_cols=128 Identities=7% Similarity=-0.052 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-C---------------hHHHHHHHHHHhccCChHHHHHHHhcC-cc
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-D---------------PADVYMQAQALFLGRHYRRPFHLLNSS-KI 67 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~---------------~~~~~~la~~l~~~g~~~~A~~~l~~~-~l 67 (136)
....++.+-..+...++|+.|+-..++++.+.| + ...++.+|.|++..|+|++|+..+++. .+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 344566677778889999999999999999998 4 367888999999999999999988664 44
Q ss_pred cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHH-HHHHh
Q 032655 68 VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARL-WLVSC 132 (136)
Q Consensus 68 ~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~-~y~~A 132 (136)
.+.+...++.+|.|+..+|+|++|+......+...|....++..+|.++..+++.++|.. .|++.
T Consensus 347 ~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999887665554445566788899999999999988764 45444
No 113
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.09 E-value=3.3e-11 Score=96.64 Aligned_cols=116 Identities=16% Similarity=0.049 Sum_probs=93.1
Q ss_pred CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccC---------------cchHHHHHHHH
Q 032655 20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD---------------LRFRYLAAKCL 82 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~---------------~~~~~l~a~c~ 82 (136)
.+++.|+-..++.....| ....++.+|.+++..|+|.+|+..++++- +.+.+ ..+++.+|.|+
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666 56678899999999999999999886653 34455 48899999999
Q ss_pred HHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 83 EELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 83 ~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.++|+|++|+......+...|....+++.+|.+|..+|++++|+.+|++||++
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999998766544333455677899999999999999999999999975
No 114
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.09 E-value=9.4e-10 Score=84.53 Aligned_cols=128 Identities=9% Similarity=0.032 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCCC-h------HHHHHHHHHHhccCChHHHHHHHhcCc-cccc------Ccc
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTND-P------ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR------DLR 73 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~-~------~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~------~~~ 73 (136)
-+..+..-+...++++.|+.+.++++.+.|. . ..++.+|.++...|++++|+..+++.. +.+. ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445566678889999999999999998862 1 257889999999999999999886643 2222 256
Q ss_pred hHHHHHHHHHHccChhhhhhhhhhhh------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 74 FRYLAAKCLEELRSGTSVCRCSVMLR------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 74 ~~~l~a~c~~~l~~~~ea~~~~~~~~------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.+.+|.++..+|++++|.......+ ...+..+.+++.+|.+|..+|++++|..+|++|+++
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 78999999999999999987543221 123445667889999999999999999999999875
No 115
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=1.5e-09 Score=81.50 Aligned_cols=125 Identities=9% Similarity=-0.090 Sum_probs=75.5
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC---C----hHHHHHHHHHHhcc-CChHHHHHHHhcCc-ccccC------cchH
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN---D----PADVYMQAQALFLG-RHYRRPFHLLNSSK-IVLRD------LRFR 75 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~---~----~~~~~~la~~l~~~-g~~~~A~~~l~~~~-l~~~~------~~~~ 75 (136)
.+-.-+...|+|+.|+.+.++++.+.| + ...+..+|.++... |+|++|+..++++. +.+.. ..++
T Consensus 82 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~ 161 (292)
T 1qqe_A 82 EAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCF 161 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 344445556677777777777776664 2 12455667777764 77777776665432 22211 3456
Q ss_pred HHHHHHHHHccChhhhhhhhhhhhc--c-cc----hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 76 YLAAKCLEELRSGTSVCRCSVMLRL--L-KM----ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 76 ~l~a~c~~~l~~~~ea~~~~~~~~~--~-~~----~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.+|.++.++|+|++|++.....+. + .+ .....++.+|.++..+|++++|+.+|++++++
T Consensus 162 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6667777777777777654432211 1 11 12235567788888888888888888888764
No 116
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.09 E-value=5.5e-10 Score=71.83 Aligned_cols=98 Identities=9% Similarity=0.037 Sum_probs=81.9
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY 116 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~ 116 (136)
++..++.+|.+++..|+|.+|+..+++.. ..+.++...+.+|.++...|++++|++.....+...|....+++.+|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45568899999999999999999887643 35567889999999999999999998866544433344567788999999
Q ss_pred HHcCChHHHHHHHHHhhcc
Q 032655 117 EALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 117 ~~~~~~~~A~~~y~~AL~~ 135 (136)
..+|++++|+.+|+++++.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999864
No 117
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.09 E-value=9e-10 Score=72.52 Aligned_cols=115 Identities=8% Similarity=-0.062 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~ 83 (136)
.+.+..+...+...++|+.|+...++++..+| ++..++.+|.|++..|+|.+|+..+++. .+.+.++..++.+|.|+.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 34566777888899999999999999999999 7888999999999999999999988664 346778899999999999
Q ss_pred HccChhhhhhhhhhhhc-----ccchHhHHHHHHHHHHHHcC
Q 032655 84 ELRSGTSVCRCSVMLRL-----LKMISSAICFLRGKAYEALG 120 (136)
Q Consensus 84 ~l~~~~ea~~~~~~~~~-----~~~~~a~i~~l~G~~~~~~~ 120 (136)
.+|++++|++.....+. ..+....+.-.++.+..+..
T Consensus 89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999875443221 11224455555555555443
No 118
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.09 E-value=5e-10 Score=75.51 Aligned_cols=97 Identities=10% Similarity=0.007 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE 117 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~ 117 (136)
++.++.+|.+++..|+|.+|+..+++. ...+.++.+++.+|.|+..+|+|++|++.....+...|....+++.+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456889999999999999999988664 3356778899999999999999999988665444333455677889999999
Q ss_pred HcCChHHHHHHHHHhhcc
Q 032655 118 ALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 118 ~~~~~~~A~~~y~~AL~~ 135 (136)
.+|++++|+.+|++++++
T Consensus 93 ~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh
Confidence 999999999999999864
No 119
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.09 E-value=2.3e-09 Score=82.59 Aligned_cols=123 Identities=7% Similarity=-0.025 Sum_probs=63.3
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCC---C-----hHHHHHHHHHHhccCChHHHHHHHhcCc-ccc------cCcchHHH
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTN---D-----PADVYMQAQALFLGRHYRRPFHLLNSSK-IVL------RDLRFRYL 77 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~---~-----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~------~~~~~~~l 77 (136)
-.-+...++++.|+.+.++++.+.+ + ......+|.++...|+|++|+..++++- +.+ ....+.+.
T Consensus 148 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 227 (378)
T 3q15_A 148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLN 227 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344445555555555555555443 1 1123445555555555555555443321 100 11234455
Q ss_pred HHHHHHHccChhhhhhhhhhhhc-----ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 78 AAKCLEELRSGTSVCRCSVMLRL-----LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 78 ~a~c~~~l~~~~ea~~~~~~~~~-----~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+|.|+..+|++++|++.....+. ..|..+.+++.+|.+|.++|++++|..+|++|+++
T Consensus 228 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 228 IANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55555555555555543322111 33444556667777777777777777777777654
No 120
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.09 E-value=1.2e-09 Score=75.96 Aligned_cols=129 Identities=5% Similarity=-0.118 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-------ChHHHHHHHHHHhccCChHHHHHHHhcCc-cc------c-cC
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-------DPADVYMQAQALFLGRHYRRPFHLLNSSK-IV------L-RD 71 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-------~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~------~-~~ 71 (136)
.-+..+-.-+...++++.|+.+.++++.+.. ....++.+|.++...|++++|+..+++.. +. + ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3455666777889999999999999998642 23457889999999999999999886632 21 1 22
Q ss_pred cchHHHHHHHHHHccChhhhhhhhhhhh------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 72 LRFRYLAAKCLEELRSGTSVCRCSVMLR------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 72 ~~~~~l~a~c~~~l~~~~ea~~~~~~~~------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..+.+.+|.++..+|++++|.......+ ......+.++..+|.++..+|++++|..+|++|+++
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3568899999999999999986543211 122334556679999999999999999999999874
No 121
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.08 E-value=3.6e-09 Score=77.61 Aligned_cols=120 Identities=8% Similarity=0.037 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhc----cCChHHHHHHHhcCcccccCcchHHHHHHHHHH
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE 84 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~ 84 (136)
..+-..+...++++.|+.+.++++. | +++.++.+|.++.. .|++.+|+..+++..- ..++.+.+.+|.++..
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD-LNYSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHhC
Confidence 3444556667888888888888777 4 56678888888888 8888888887765431 2467777888888888
Q ss_pred ----ccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH----cCChHHHHHHHHHhhc
Q 032655 85 ----LRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA----LGNCAQARLWLVSCDE 134 (136)
Q Consensus 85 ----l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~----~~~~~~A~~~y~~AL~ 134 (136)
.+++++|++......+. ..+..++.+|.+|.. .+++++|+++|++|++
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 88888876543221111 022334444555555 5555555555555443
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.08 E-value=5.6e-10 Score=83.83 Aligned_cols=85 Identities=7% Similarity=0.004 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~ 87 (136)
..+-..+...++|+.|+-..++++...| ++..++.+|.|++..|+|++|+..+++. .+.+.+...++.+|.++..+|+
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 87 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES 87 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3344444455555555555555555555 4444555555555555555555544332 2334444555555555555555
Q ss_pred hhhhhhh
Q 032655 88 GTSVCRC 94 (136)
Q Consensus 88 ~~ea~~~ 94 (136)
+++|+..
T Consensus 88 ~~~A~~~ 94 (281)
T 2c2l_A 88 YDEAIAN 94 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 123
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=1.8e-09 Score=81.04 Aligned_cols=133 Identities=11% Similarity=-0.027 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC---C----hHHHHHHHHHHhccCChHHHHHHHhcCc-cccc----
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN---D----PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLR---- 70 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~---~----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~---- 70 (136)
++.++-+.....-+...++|+.|+-..++++.+.+ + ...+..+|.++...|+|++|+..++++. +.+.
T Consensus 34 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~ 113 (292)
T 1qqe_A 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF 113 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 45666777777788889999999999999999864 3 3357789999999999999999886643 2221
Q ss_pred --CcchHHHHHHHHHHc-cChhhhhhhhhhhhc-----cc-chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 71 --DLRFRYLAAKCLEEL-RSGTSVCRCSVMLRL-----LK-MISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 71 --~~~~~~l~a~c~~~l-~~~~ea~~~~~~~~~-----~~-~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...+...+|.++... |++++|+......+. +. +..+.++..+|.+|..+|++++|+.+|++++++
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 135788999999995 999999875443221 11 223456778899999999999999999999874
No 124
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.07 E-value=9.2e-10 Score=76.53 Aligned_cols=77 Identities=13% Similarity=-0.036 Sum_probs=63.4
Q ss_pred CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccC--cchHHHHHHHHHHccChhhhhhhh
Q 032655 20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRD--LRFRYLAAKCLEELRSGTSVCRCS 95 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~--~~~~~l~a~c~~~l~~~~ea~~~~ 95 (136)
+....|+-..++++..+| +++.++.+|.++...|++++|+..+++. ...+.+ ...++.+|.++..+|++++|....
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 344568889999999999 7889999999999999999999988664 233333 558999999999999999987654
Q ss_pred h
Q 032655 96 V 96 (136)
Q Consensus 96 ~ 96 (136)
.
T Consensus 168 ~ 168 (176)
T 2r5s_A 168 R 168 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 125
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.06 E-value=6.2e-10 Score=76.21 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhcC-cc------------------cccCcchHHHHHHHHHHccChhhhhhhhhhhhc
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNSS-KI------------------VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL 100 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~~-~l------------------~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~ 100 (136)
+.+...|..++..|+|..|+..+++. .+ .+.+..+++.+|.|++++|+|++|+......+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45778899999999999999988664 22 334557899999999999999999986655443
Q ss_pred ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 101 LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 101 ~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..|..+.+++.+|.+|..+|++++|+.+|++||++
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 34556678899999999999999999999999874
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.06 E-value=1e-09 Score=69.99 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE 117 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~ 117 (136)
+..++.+|.++...|++.+|+..+++.. ..+.++...+.+|.++...|++++|+..........|.....++.+|.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678899999999999999999886643 345677888999999999999999987655433323344567789999999
Q ss_pred HcCChHHHHHHHHHhhcc
Q 032655 118 ALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 118 ~~~~~~~A~~~y~~AL~~ 135 (136)
.+|++++|..+|+++++.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999999864
No 127
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.06 E-value=1.5e-09 Score=69.93 Aligned_cols=115 Identities=11% Similarity=-0.005 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccC-------cchHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD-------LRFRY 76 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~-------~~~~~ 76 (136)
.+.+..+...+...++++.|+.+.++++...| ++..++.+|.+++..|+|.+|+..+++.. ..+.+ ..+.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 44566777888999999999999999999999 77889999999999999999999886643 23444 77899
Q ss_pred HHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCC
Q 032655 77 LAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGN 121 (136)
Q Consensus 77 l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~ 121 (136)
.+|.++..+|++++|.+.....+...| ...+...++.+.+.++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 999999999999999886654333223 35556677777766543
No 128
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.06 E-value=8e-10 Score=78.01 Aligned_cols=97 Identities=9% Similarity=0.070 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCc----------------chHHHHHHHHHHccChhhhhhhhhhhhcc
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDL----------------RFRYLAAKCLEELRSGTSVCRCSVMLRLL 101 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~----------------~~~~l~a~c~~~l~~~~ea~~~~~~~~~~ 101 (136)
.+.+..+|.+++..|+|.+|+..+++.. +.+.++ .+++.+|.|+.++|+|++|+......+..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4458889999999999999999886643 344555 78999999999999999998866544433
Q ss_pred cchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 102 KMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 102 ~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.|....+++.+|.+|..+|++++|+.+|++|+++
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3456677899999999999999999999999864
No 129
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.05 E-value=1.2e-09 Score=84.27 Aligned_cols=120 Identities=11% Similarity=0.041 Sum_probs=95.3
Q ss_pred HHHHcCChhhHHHHHHHHhccCC---C----hHHHHHHHHHHhccCChHHHHHHHhcCc-ccc-------cCcchHHHHH
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN---D----PADVYMQAQALFLGRHYRRPFHLLNSSK-IVL-------RDLRFRYLAA 79 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~---~----~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~-------~~~~~~~l~a 79 (136)
.+...++|+.|+-+.++++.+.+ + .+..+.+|.+++..|++..|+..++++. +.+ ....+.+.+|
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 35678999999999999998763 2 2358889999999999999998876532 111 2356888999
Q ss_pred HHHHHccChhhhhhhhhhhh------cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 80 KCLEELRSGTSVCRCSVMLR------LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 80 ~c~~~l~~~~ea~~~~~~~~------~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.++..+|+|++|++.....+ ...+..+.+++.+|.+|..+|++++|+.+|++|++
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999987543321 12234666788999999999999999999999987
No 130
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=5.5e-09 Score=75.11 Aligned_cols=120 Identities=16% Similarity=0.101 Sum_probs=86.4
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccC----ChHHHHHHHhcCcccccCcchHHHHHHHHHH---
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGR----HYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE--- 84 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g----~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~--- 84 (136)
+-..+...++++.|+.|.+++... ++++..+.+|.+|.. | ++.+|+.++++. ....++.+.+.+|.++..
T Consensus 24 lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A-~~~g~~~a~~~Lg~~y~~g~g 100 (212)
T 3rjv_A 24 LADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAEKA-VEAGSKSGEIVLARVLVNRQA 100 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHTCGGG
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHcCCC
Confidence 334455578999999999998754 478889999999888 6 899999988765 245678888899999888
Q ss_pred -ccChhhhhhhhhhhhcccc--hHhHHHHHHHHHHHH----cCChHHHHHHHHHhhc
Q 032655 85 -LRSGTSVCRCSVMLRLLKM--ISSAICFLRGKAYEA----LGNCAQARLWLVSCDE 134 (136)
Q Consensus 85 -l~~~~ea~~~~~~~~~~~~--~~a~i~~l~G~~~~~----~~~~~~A~~~y~~AL~ 134 (136)
.+++++|++......+.-+ ..+..++.+|.+|.. .++.++|+.+|++|++
T Consensus 101 ~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 157 (212)
T 3rjv_A 101 GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS 157 (212)
T ss_dssp SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 8888888765444332111 234556677777777 6677777777777664
No 131
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.03 E-value=3.9e-09 Score=68.70 Aligned_cols=97 Identities=12% Similarity=-0.050 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCc---chHHHHHHHHHHccChhhhhhhhhhhhcccc---hHhHHHHH
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDL---RFRYLAAKCLEELRSGTSVCRCSVMLRLLKM---ISSAICFL 111 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~---~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~---~~a~i~~l 111 (136)
++.++.+|.+++..|+|.+|+..+++.. ..+.++ ...+.+|.|++++|+|++|++.....+...| ....+++.
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 3467899999999999999999887643 245566 6899999999999999999886654433222 23677889
Q ss_pred HHHHHHHcCChHHHHHHHHHhhcc
Q 032655 112 RGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 112 ~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+|.+|..+|++++|+.+|+++++.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999863
No 132
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.01 E-value=3.1e-09 Score=78.05 Aligned_cols=129 Identities=13% Similarity=0.031 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-Ch----HHHHHHHHHHhccCChHHHHHHHhcCc-c------cccCcch
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DP----ADVYMQAQALFLGRHYRRPFHLLNSSK-I------VLRDLRF 74 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~----~~~~~la~~l~~~g~~~~A~~~l~~~~-l------~~~~~~~ 74 (136)
..+...-..+...+++++|+.+.++++...| ++ ..++.+|.+++..|+|.+|+..+++.. + .+....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3455566778889999999999999999998 53 457789999999999999999876532 1 2234568
Q ss_pred HHHHHHHHHHccChhhhhhhhhhh------hcccchHhHHHHHHHHHHHHcCC--------------------hHHHHHH
Q 032655 75 RYLAAKCLEELRSGTSVCRCSVML------RLLKMISSAICFLRGKAYEALGN--------------------CAQARLW 128 (136)
Q Consensus 75 ~~l~a~c~~~l~~~~ea~~~~~~~------~~~~~~~a~i~~l~G~~~~~~~~--------------------~~~A~~~ 128 (136)
.+.+|.++..+|++++|++..... ....+..+.++..+|.+|..+|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 899999999999999998754321 11223456677899999999999 9999999
Q ss_pred HHHhhcc
Q 032655 129 LVSCDEF 135 (136)
Q Consensus 129 y~~AL~~ 135 (136)
|++++++
T Consensus 166 ~~~a~~~ 172 (338)
T 3ro2_A 166 YEENLSL 172 (338)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988753
No 133
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.01 E-value=1.7e-09 Score=84.70 Aligned_cols=123 Identities=11% Similarity=-0.032 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhc----------------cCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-c
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAA----------------LTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-K 66 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~----------------~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~ 66 (136)
..+.+..+-..+...++|+.|+...++++. ..| ++..++.+|.|++..|+|++|+..+++. .
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 445577777888899999999999999998 555 5667889999999999999999988664 4
Q ss_pred ccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHH
Q 032655 67 IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARL 127 (136)
Q Consensus 67 l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~ 127 (136)
+.+.+..+++.+|.|+..+|+|++|++.....+...|....+...++.++..+++.++|..
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999887655443334456677889999999998888754
No 134
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=3.4e-09 Score=70.00 Aligned_cols=112 Identities=13% Similarity=-0.018 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCCC----hHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTND----PADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAK 80 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~----~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~ 80 (136)
.+.+..+...+...++|+.|+-+.++++...|+ +..++.+|.+++..|+|.+|+..+++. ...+.++..++.+|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 456677888899999999999999999999996 567899999999999999999988664 335677889999999
Q ss_pred HHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHH
Q 032655 81 CLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYE 117 (136)
Q Consensus 81 c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~ 117 (136)
++..+|++++|.......+...|....+...++.+.+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999999999987655433322334444555565544
No 135
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.00 E-value=2.7e-09 Score=75.19 Aligned_cols=93 Identities=10% Similarity=-0.028 Sum_probs=79.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC
Q 032655 41 DVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG 120 (136)
Q Consensus 41 ~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~ 120 (136)
..+.+|.+++..|+|.+|+..+++.. +.++.+++.+|.++..+|+|++|++.....+...|....+++.+|.+|..+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 57889999999999999999998873 4577899999999999999999988665444333456678889999999999
Q ss_pred ChHHHHHHHHHhhcc
Q 032655 121 NCAQARLWLVSCDEF 135 (136)
Q Consensus 121 ~~~~A~~~y~~AL~~ 135 (136)
++++|+.+|+++++.
T Consensus 86 ~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQ 100 (213)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999999874
No 136
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.00 E-value=5.8e-09 Score=76.52 Aligned_cols=73 Identities=7% Similarity=0.014 Sum_probs=39.1
Q ss_pred cCChhhHHHHHHHHhccCCChHHHHHHHHHHhc----cCChHHHHHHHhcCcccccCcchHHHHHHHHHH----ccChhh
Q 032655 19 KHLYSSAIFFANEVAALTNDPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE----LRSGTS 90 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~----l~~~~e 90 (136)
.++++.|+.+.++++.. ++++..+.+|.++.. .|++++|+..+++..- ..++.+.+.+|.++.. .+++++
T Consensus 91 ~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~~~~~~~~~~~ 168 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LNDGDGCTILGSLYDAGRGTPKDLKK 168 (273)
T ss_dssp CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cCcHHHHHHHHHHHHcCCCCCCCHHH
Confidence 55666666666655554 245555555665555 5566666555544321 1244455555555555 555555
Q ss_pred hhh
Q 032655 91 VCR 93 (136)
Q Consensus 91 a~~ 93 (136)
|.+
T Consensus 169 A~~ 171 (273)
T 1ouv_A 169 ALA 171 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 137
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.98 E-value=9e-10 Score=84.96 Aligned_cols=131 Identities=10% Similarity=-0.115 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCC-h-----------------HHHHHHHHHHhccCChHHHHHHHhcC-
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTND-P-----------------ADVYMQAQALFLGRHYRRPFHLLNSS- 65 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~-~-----------------~~~~~la~~l~~~g~~~~A~~~l~~~- 65 (136)
..+.++.+-..+...++|+.|+...++++.+.|+ + ..++.+|.|++..|+|.+|+..+++.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455666667777889999999999999999983 3 26788999999999999999988664
Q ss_pred cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHH-HHHcCChHHHHHHHHHhhcc
Q 032655 66 KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKA-YEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 66 ~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~-~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+.+.+..+++.+|.++..+|+|++|.......+...|....+...++.+ ....+..++|...|+++|..
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 34567888999999999999999999877665443334455666777877 45567788888888888753
No 138
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.97 E-value=2.7e-09 Score=70.58 Aligned_cols=88 Identities=7% Similarity=-0.116 Sum_probs=77.7
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~ 87 (136)
-.+...++..++++.|+-..++++...| +++.++.+|.++...|++.+|+..+++. .+.+.++..++.+|.++..+|+
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3445667889999999999999999999 8899999999999999999999998665 4467888999999999999999
Q ss_pred hhhhhhhhhh
Q 032655 88 GTSVCRCSVM 97 (136)
Q Consensus 88 ~~ea~~~~~~ 97 (136)
+++|++....
T Consensus 101 ~~~A~~~~~~ 110 (121)
T 1hxi_A 101 ANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999875543
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.96 E-value=3.4e-09 Score=79.49 Aligned_cols=98 Identities=14% Similarity=0.084 Sum_probs=83.6
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAY 116 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~ 116 (136)
+++.++.+|..++..|+|.+|+..+++. ...+.++..++.+|.|+.++|+|++|+......+...|....+++.+|.+|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5677899999999999999999988765 336678899999999999999999998876655444455667888999999
Q ss_pred HHcCChHHHHHHHHHhhcc
Q 032655 117 EALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 117 ~~~~~~~~A~~~y~~AL~~ 135 (136)
..+|++++|+..|++|+++
T Consensus 83 ~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 140
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.96 E-value=1.1e-08 Score=77.24 Aligned_cols=127 Identities=9% Similarity=-0.071 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCCChH-HHHHHH--HHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTNDPA-DVYMQA--QALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEE 84 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~-~~~~la--~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~ 84 (136)
...+++-++..|+++.|+-..++++...|+.. .....+ ..+...|++.+|+.++++.. ..+.++..++.+|.|+.+
T Consensus 133 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 133 MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34456677888999999999999999988432 222222 33345588999999886643 256778889999999999
Q ss_pred ccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHH-HHHHHHhhcc
Q 032655 85 LRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQA-RLWLVSCDEF 135 (136)
Q Consensus 85 l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A-~~~y~~AL~~ 135 (136)
+|++++|+......+...|..+.+++.+|.++..+|+..++ ..++++++++
T Consensus 213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999876654444456677789999999999999875 5788888753
No 141
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.94 E-value=5.2e-09 Score=79.47 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-------ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccC------c
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-------DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD------L 72 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-------~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~------~ 72 (136)
.-+..+..-+...+++++|+.+.++++.+.+ .+..++.+|.++...|++++|+..+++.. +.+.. .
T Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 127 (406)
T 3sf4_A 48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 127 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchH
Confidence 3455666777788999999999999887742 23357778999999999999988776542 22222 3
Q ss_pred chHHHHHHHHHHccC
Q 032655 73 RFRYLAAKCLEELRS 87 (136)
Q Consensus 73 ~~~~l~a~c~~~l~~ 87 (136)
.+.+.+|.++...|+
T Consensus 128 ~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 128 RALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC
Confidence 478888999999999
No 142
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.93 E-value=2.7e-09 Score=83.64 Aligned_cols=96 Identities=10% Similarity=0.107 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhcCc-----------------ccccCcchHHHHHHHHHHccChhhhhhhhhhhhccc
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNSSK-----------------IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLK 102 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~~~-----------------l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~ 102 (136)
+.+..+|.+++..|+|++|+..++++. +.+.+..+++.+|.|++++|+|++|++.....+...
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 347889999999999999999886643 344567899999999999999999998766555444
Q ss_pred chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 103 MISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 103 ~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|..+.+++.+|.+|..+|++++|+.+|++|+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 556778899999999999999999999999875
No 143
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.92 E-value=7.7e-10 Score=72.16 Aligned_cols=80 Identities=14% Similarity=0.008 Sum_probs=65.9
Q ss_pred HcCChhhHHHHHHHHhccC---C-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhh
Q 032655 18 SKHLYSSAIFFANEVAALT---N-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 18 ~~~~~~~Alf~aekl~~~~---~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
..|+++.|+-+.++++.+. | ++..++.+|.+++..|+|.+|+..+++. .+.+.++..++.+|.|+..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3688999999999999994 6 5667999999999999999999988765 346788999999999999999999998
Q ss_pred hhhhh
Q 032655 93 RCSVM 97 (136)
Q Consensus 93 ~~~~~ 97 (136)
+....
T Consensus 82 ~~~~~ 86 (117)
T 3k9i_A 82 ELLLK 86 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76544
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.92 E-value=9.6e-09 Score=78.48 Aligned_cols=122 Identities=12% Similarity=-0.027 Sum_probs=99.9
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccc-c--CcchHHHHHHHHHHccC
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVL-R--DLRFRYLAAKCLEELRS 87 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~-~--~~~~~~l~a~c~~~l~~ 87 (136)
.....+..++|+.|.-..+.+....| ++ ..|.+|..++..|+|..|+..++...-.+ . .....+.+|.++..+|+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence 34556678999999999999998888 45 88999999999999999999998653211 1 12478999999999999
Q ss_pred hhhhhhhhhhhhcc-c-ch-HhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 88 GTSVCRCSVMLRLL-K-MI-SSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 88 ~~ea~~~~~~~~~~-~-~~-~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+++|++.......+ . |. .+.+.+.+|.++.++|+.++|...|++++.
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999877654432 2 43 556889999999999999999999999875
No 145
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.90 E-value=3.7e-10 Score=71.67 Aligned_cols=84 Identities=12% Similarity=0.140 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccC------cchHHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRD------LRFRYLAAK 80 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~------~~~~~l~a~ 80 (136)
+..+-..+...++|+.|+-+.++++.+.| ++..++.+|.|++..|+|.+|+..+++. .+.+.+ ..+.+..|.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 86 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLEL 86 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence 34444555556666666666666666666 5555666666666666666666655443 223333 445555566
Q ss_pred HHHHccChhhhh
Q 032655 81 CLEELRSGTSVC 92 (136)
Q Consensus 81 c~~~l~~~~ea~ 92 (136)
++..+|++++|+
T Consensus 87 ~~~~~~~~~~a~ 98 (111)
T 2l6j_A 87 AQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHCCCCCS
T ss_pred HHHHHHhHhhhH
Confidence 666666555544
No 146
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.89 E-value=1.8e-08 Score=76.00 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
++.+|.++..+|++++|+.+|++++
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3344555555555555555555554
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.88 E-value=1.1e-08 Score=70.99 Aligned_cols=118 Identities=14% Similarity=0.035 Sum_probs=88.4
Q ss_pred HHcCChhhHHHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHHhcCc-------ccccCcchHHHHHHHHHHccC
Q 032655 17 VSKHLYSSAIFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLLNSSK-------IVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 17 l~~~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~~-------l~~~~~~~~~l~a~c~~~l~~ 87 (136)
+..|+|+.|.-.++.+.. .| .+...+.+|.++...|+|++|+..+++.. ..+....+.+.+|.++..+|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 567899999986666544 44 45678899999999999999998886632 122455788999999999999
Q ss_pred hhhhhhhhhhhh-----cc-cc-hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 88 GTSVCRCSVMLR-----LL-KM-ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 88 ~~ea~~~~~~~~-----~~-~~-~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+++|.+.....+ .+ .+ ..+.+++.+|.++..+|++++|..+|++++++
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999987543211 12 22 45667789999999999999999999999863
No 148
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.88 E-value=1.2e-09 Score=71.14 Aligned_cols=85 Identities=7% Similarity=-0.181 Sum_probs=67.1
Q ss_pred ccCChHHHHHHHhcC-cc---cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHH
Q 032655 51 LGRHYRRPFHLLNSS-KI---VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQAR 126 (136)
Q Consensus 51 ~~g~~~~A~~~l~~~-~l---~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~ 126 (136)
..|+|.+|+..+++. .+ ++.++.+++.+|.++..+|+|++|++.....+...|....+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 368899999988664 33 36778899999999999999999998776554444556778899999999999999999
Q ss_pred HHHHHhhcc
Q 032655 127 LWLVSCDEF 135 (136)
Q Consensus 127 ~~y~~AL~~ 135 (136)
.+|+++++.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999864
No 149
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.88 E-value=3.4e-08 Score=74.52 Aligned_cols=132 Identities=6% Similarity=-0.106 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-------ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccc-----
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-------DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVL----- 69 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-------~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~----- 69 (136)
++.++-+.....-+...++|+.|+-..++++.+.+ .......+|.++...|+|.+|+..++++. +..
T Consensus 33 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~ 112 (307)
T 2ifu_A 33 DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP 112 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 56677788888889999999999999999998874 14567889999999999999999886642 111
Q ss_pred -cCcchHHHHHHHHHHccChhhhhhhhhhhhc-----cc-chHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 70 -RDLRFRYLAAKCLEELRSGTSVCRCSVMLRL-----LK-MISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 70 -~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~-----~~-~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
....++..+|.++.. |++++|++.....++ +. +..+.++..+|.+|..+|++++|+.+|++|+++
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 124577889999999 999999875443221 12 234566778999999999999999999999864
No 150
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.86 E-value=1.1e-08 Score=65.53 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA 118 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~ 118 (136)
+.++.+|.+++..|++.+|+.++++.. ..+.+....+.+|.++...|++++|.+.........|.....++.+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 457889999999999999999886642 2456778889999999999999999876554332233445677889999999
Q ss_pred cCChHHHHHHHHHhhcc
Q 032655 119 LGNCAQARLWLVSCDEF 135 (136)
Q Consensus 119 ~~~~~~A~~~y~~AL~~ 135 (136)
+|++++|+.+|.++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL 98 (136)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 99999999999998763
No 151
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.85 E-value=1.7e-09 Score=76.16 Aligned_cols=95 Identities=11% Similarity=-0.005 Sum_probs=71.8
Q ss_pred HcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655 18 SKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 18 ~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
..++|+.|+-.+++++.++| +++.++.+|.++...|+++.+...++ .+++|+....
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~-----------------------~~~eAi~~le 70 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ-----------------------MIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH-----------------------HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh-----------------------HHHHHHHHHH
Confidence 35679999999999999999 78888889999999999875555332 3666665554
Q ss_pred hhhcccchHhHHHHHHHHHHHHc-----------CChHHHHHHHHHhhcc
Q 032655 97 MLRLLKMISSAICFLRGKAYEAL-----------GNCAQARLWLVSCDEF 135 (136)
Q Consensus 97 ~~~~~~~~~a~i~~l~G~~~~~~-----------~~~~~A~~~y~~AL~~ 135 (136)
..+.-.|..+.+++.+|.+|..+ |++++|+++|++||++
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 43333345566677777777766 5899999999999975
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.85 E-value=2.5e-08 Score=66.30 Aligned_cols=90 Identities=7% Similarity=0.015 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCc-------chHHHH
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDL-------RFRYLA 78 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~-------~~~~l~ 78 (136)
-.+.+=..+..+++|+.|+.+.++++.++| ++..++.+|.|++..|+|++|+..+++. .+.+.+. .+++.+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 445555677889999999999999999999 7888999999999999999999988664 3334433 367788
Q ss_pred HHHHHHccChhhhhhhhhh
Q 032655 79 AKCLEELRSGTSVCRCSVM 97 (136)
Q Consensus 79 a~c~~~l~~~~ea~~~~~~ 97 (136)
|.++..+|+|++|++....
T Consensus 90 g~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 9999999999999876544
No 153
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.1e-08 Score=64.63 Aligned_cols=94 Identities=15% Similarity=0.000 Sum_probs=76.0
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccch------HhHHHH
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMI------SSAICF 110 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~------~a~i~~ 110 (136)
+++.++.+|.+++..|+|.+|+..+++. .+.+.++..++.+|.|+..+|+|++|++.....+...|. ...+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4567889999999999999999988664 346678899999999999999999998865543322222 266778
Q ss_pred HHHHHHHHcCChHHHHHHHHH
Q 032655 111 LRGKAYEALGNCAQARLWLVS 131 (136)
Q Consensus 111 l~G~~~~~~~~~~~A~~~y~~ 131 (136)
.+|.++..+|+.++|+..|++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999999988877654
No 154
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.84 E-value=6.2e-09 Score=80.26 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCc-----------------chHHHHHHHHHHccChhhhhhhhhhhhc
Q 032655 39 PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDL-----------------RFRYLAAKCLEELRSGTSVCRCSVMLRL 100 (136)
Q Consensus 39 ~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~-----------------~~~~l~a~c~~~l~~~~ea~~~~~~~~~ 100 (136)
.+.++.+|.+++..|+|.+|+..+++.. +.+.+. .+++.+|.|+.++|+|++|++.....+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3458889999999999999999887642 233333 3889999999999999999986655443
Q ss_pred ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 101 LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 101 ~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..|....+++.+|.+|..+|++++|+.+|++|+++
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33455677899999999999999999999999875
No 155
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.83 E-value=5.5e-08 Score=73.19 Aligned_cols=118 Identities=8% Similarity=-0.077 Sum_probs=67.9
Q ss_pred HHcCChhhHHHHHHHHhccCC-ChH-HHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHH-ccChhhhh
Q 032655 17 VSKHLYSSAIFFANEVAALTN-DPA-DVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEE-LRSGTSVC 92 (136)
Q Consensus 17 l~~~~~~~Alf~aekl~~~~~-~~~-~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~-l~~~~ea~ 92 (136)
...++++.|.-..++++.+.| +++ .+..+|.++...|++++|..++++.. +.+.+...+.-.|..... +|++++|.
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 345666666666666666666 454 56666666666666666666665432 122333333222222221 56666665
Q ss_pred hhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 93 RCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 93 ~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
......+...|....++...|.++..+|+.++|...|++|++
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 433322222344556667778888888888888888888776
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.82 E-value=1.1e-08 Score=64.19 Aligned_cols=87 Identities=11% Similarity=0.031 Sum_probs=75.1
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-ccccc--CcchHHHHHHHHHHc-
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLR--DLRFRYLAAKCLEEL- 85 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~--~~~~~~l~a~c~~~l- 85 (136)
.+...+...++++.|+-+.++++...| ++..++.+|.+++..|+|++|+..+++. ...+. +..+++.+|.|+..+
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence 345567788999999999999999999 7788999999999999999999988664 33556 788999999999999
Q ss_pred cChhhhhhhhhh
Q 032655 86 RSGTSVCRCSVM 97 (136)
Q Consensus 86 ~~~~ea~~~~~~ 97 (136)
|++++|.+....
T Consensus 91 ~~~~~A~~~~~~ 102 (112)
T 2kck_A 91 GKEVEAEIAEAR 102 (112)
T ss_dssp SCSHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999999875543
No 157
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.81 E-value=8.5e-08 Score=72.14 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=63.6
Q ss_pred hhHHHHHHHHhccCC-ChHHHHHHHHHHhc-------cCCh-------HHHHHHHhcCc--ccccCcchHHHHHHHHHHc
Q 032655 23 SSAIFFANEVAALTN-DPADVYMQAQALFL-------GRHY-------RRPFHLLNSSK--IVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 23 ~~Alf~aekl~~~~~-~~~~~~~la~~l~~-------~g~~-------~~A~~~l~~~~--l~~~~~~~~~l~a~c~~~l 85 (136)
+.|+...++++..+| +++.|+.+|..+.. .|++ ++|..+++++- +.+.+...++.+|..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 456666666666666 56666666666553 3554 56666664432 2345555666666666666
Q ss_pred cChhhhhhhhhhhhcccchHhH-HHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 86 RSGTSVCRCSVMLRLLKMISSA-ICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 86 ~~~~ea~~~~~~~~~~~~~~a~-i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
|++++|.+.....+...|.... ++...|.++.++|+.++|...|++|++
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 162 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 162 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 6666665544333222222222 555566666666666666666666654
No 158
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=98.81 E-value=9.6e-08 Score=68.44 Aligned_cols=121 Identities=16% Similarity=0.119 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccC
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~ 87 (136)
.+..-|..++.--+|++|+|.+.-+++-.| +--.+++..+|.+|+|.||+-+|.+.+ .....|-.+.|+.++++
T Consensus 4 ~~~~kI~Ks~kY~dYdt~~fLsa~L~~~~~--eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~LCy~klKd 77 (242)
T 3kae_A 4 KLIGKICKSIRYRDYETAIFLAACLLPCKP--EYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYESLCYKKKKD 77 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHC------CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHccCCh--HHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHHHHHHHHHH
Confidence 345567778889999999999987766444 777889999999999999999998753 34567889999999999
Q ss_pred hhhhhhhhhh----------hhc----c---cch-HhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 88 GTSVCRCSVM----------LRL----L---KMI-SSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 88 ~~ea~~~~~~----------~~~----~---~~~-~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
|+.|+..... .+| . .|. ..-.+.++|.++..+|++++|+.+|++...
T Consensus 78 YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 78 YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 9999643221 011 0 132 333344789999999999999999998754
No 159
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.80 E-value=1.9e-07 Score=71.26 Aligned_cols=89 Identities=15% Similarity=0.090 Sum_probs=64.1
Q ss_pred HHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhhhcc-cc-hHhHHHHHHHHHHHHcCC
Q 032655 45 QAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLL-KM-ISSAICFLRGKAYEALGN 121 (136)
Q Consensus 45 la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~-~~-~~a~i~~l~G~~~~~~~~ 121 (136)
+|.+|...|+|.+|..++..... .+.+. ..|..|..+++.|+|++|+......... .| ....+++.+|.++..+|+
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence 45667777788888877766543 33444 7788888888888888877654432211 12 246789999999999999
Q ss_pred hHHHHHHHHHhhc
Q 032655 122 CAQARLWLVSCDE 134 (136)
Q Consensus 122 ~~~A~~~y~~AL~ 134 (136)
+++|..+|.+++.
T Consensus 187 ~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 187 FTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999863
No 160
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.79 E-value=1.5e-08 Score=79.18 Aligned_cols=44 Identities=9% Similarity=-0.069 Sum_probs=20.8
Q ss_pred CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHh
Q 032655 20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLN 63 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~ 63 (136)
+.++.|+-..++++...| .+..+..+|.++...|++.+|+..++
T Consensus 227 ~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 344455555555555555 34444555555555555555555443
No 161
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.78 E-value=2.2e-08 Score=78.26 Aligned_cols=123 Identities=12% Similarity=-0.032 Sum_probs=92.6
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhc---cCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccC
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFL---GRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~---~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~ 87 (136)
....+..++|+.|+-+.++++.+.| +|+..+.+|.+++. .|++.+|+..+++. .+.+.++.....+|.++..+++
T Consensus 145 ~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~ 224 (472)
T 4g1t_A 145 TRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224 (472)
T ss_dssp HHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-
T ss_pred HHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHh
Confidence 3334455689999999999999999 78888888888655 46778888877654 4466777888888888887765
Q ss_pred h----hhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 88 G----TSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 88 ~----~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
. ++|.......+...|....++..+|.+|..+|++++|+..|++|++.
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 4 45554433333334556677889999999999999999999999864
No 162
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=1.2e-07 Score=68.07 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=89.7
Q ss_pred ChhhHHHHHHHHhccCCChHHHHHHHHHHhc----cCChHHHHHHHhcCccccc---CcchHHHHHHHHHH----ccChh
Q 032655 21 LYSSAIFFANEVAALTNDPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLR---DLRFRYLAAKCLEE----LRSGT 89 (136)
Q Consensus 21 ~~~~Alf~aekl~~~~~~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~---~~~~~~l~a~c~~~----l~~~~ 89 (136)
+++.|+.|.+++.. .++++..+.+|.+|.. .+++.+|+..+++..-... ++.+.+.+|.++.. .++++
T Consensus 68 ~~~~A~~~~~~A~~-~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 68 DYPQARQLAEKAVE-AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 89999999999943 2488999999999998 8999999999876542112 37899999999999 88999
Q ss_pred hhhhhhhhhhcccchHhHHHHHHHHHHHHc-C-----ChHHHHHHHHHhhc
Q 032655 90 SVCRCSVMLRLLKMISSAICFLRGKAYEAL-G-----NCAQARLWLVSCDE 134 (136)
Q Consensus 90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~-~-----~~~~A~~~y~~AL~ 134 (136)
+|........+. +..+..++.+|.+|... | +.++|+.+|++|.+
T Consensus 147 ~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 147 KASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 998766544332 12334678999999875 3 89999999999975
No 163
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.74 E-value=2.1e-08 Score=63.87 Aligned_cols=61 Identities=18% Similarity=0.129 Sum_probs=41.9
Q ss_pred CC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655 36 TN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 36 ~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
+| ++..++.+|.+++..|+|.+|+..+++. .+.+.++..++.+|.|+.++|++++|++...
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 65 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45 5667777788888888888887777554 3355666777777777777777777776544
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.72 E-value=4.3e-09 Score=84.93 Aligned_cols=96 Identities=10% Similarity=0.006 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHH
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEA 118 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~ 118 (136)
+.++.+|.+++..|+|++|+..++++ .+.+.+...++.+|.|+.++|+|++|++.....+...|..+..++.+|.+|..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34566788999999999999988665 34667889999999999999999999987665544445567788899999999
Q ss_pred cCChHHHHHHHHHhhcc
Q 032655 119 LGNCAQARLWLVSCDEF 135 (136)
Q Consensus 119 ~~~~~~A~~~y~~AL~~ 135 (136)
+|++++|+++|++|+++
T Consensus 87 ~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV 103 (477)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999999874
No 165
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=2.1e-07 Score=63.94 Aligned_cols=89 Identities=8% Similarity=-0.030 Sum_probs=76.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHH-HhccCCh--HHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQA-LFLGRHY--RRPFHLLNSS-KIVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~-l~~~g~~--~~A~~~l~~~-~l~~~~~~~~~l~a~c~~ 83 (136)
+..+..-+...++++.|+.+.++++.+.| ++..++.+|.+ ++..|++ .+|+..+++. ...+.++..++.+|.+++
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 126 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAF 126 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 44556677889999999999999999999 78889999999 7899999 9999988664 335678899999999999
Q ss_pred HccChhhhhhhhhh
Q 032655 84 ELRSGTSVCRCSVM 97 (136)
Q Consensus 84 ~l~~~~ea~~~~~~ 97 (136)
.+|++++|......
T Consensus 127 ~~g~~~~A~~~~~~ 140 (177)
T 2e2e_A 127 MQANYAQAIELWQK 140 (177)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcccHHHHHHHHHH
Confidence 99999999876543
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.68 E-value=9.3e-08 Score=63.02 Aligned_cols=96 Identities=9% Similarity=-0.019 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhcCc-ccccCc------chHHHHHHHHHHccChhhhhhhhhhh------hcccchHh
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDL------RFRYLAAKCLEELRSGTSVCRCSVML------RLLKMISS 106 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~------~~~~l~a~c~~~l~~~~ea~~~~~~~------~~~~~~~a 106 (136)
...+.+|.+++..|+|.+|+..+++.. +.+... .+.+.+|.++...|++++|.+..... ..+.+..+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 357889999999999999999886643 222222 47899999999999999998754321 11223456
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 107 AICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 107 ~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+++.+|.++..+|++++|+.+|++++++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 67789999999999999999999999864
No 167
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.66 E-value=5.1e-07 Score=68.71 Aligned_cols=122 Identities=11% Similarity=-0.047 Sum_probs=87.2
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC-C-hH----HHHHHHHHHhccCChHHHHHHHhcCc-ccccC------cchHHHHHH
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN-D-PA----DVYMQAQALFLGRHYRRPFHLLNSSK-IVLRD------LRFRYLAAK 80 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~-~-~~----~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~------~~~~~l~a~ 80 (136)
.-++..++++.|+-++++++...| + +. ....+|.++...|++.+|...+++.. +.+.. ..+.+..|.
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 445678999999999999998887 2 22 35678999999999999998886642 11211 234678899
Q ss_pred HHHHccChhhhhhhhhhhh------cc--cchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 81 CLEELRSGTSVCRCSVMLR------LL--KMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 81 c~~~l~~~~ea~~~~~~~~------~~--~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++...|++++|++.....+ .+ .|..+..+..+|.++..+|++++|..+|.+++++
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999976433211 11 1344555667888888888888888888888753
No 168
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.65 E-value=2.6e-07 Score=62.39 Aligned_cols=110 Identities=13% Similarity=-0.002 Sum_probs=89.0
Q ss_pred CChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHH----ccChhhhhhhh
Q 032655 20 HLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE----LRSGTSVCRCS 95 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~----l~~~~ea~~~~ 95 (136)
.+++.|+.|.+++.... +++.. +|.+|...+.+.+|+..++++- ...++.+.+.+|.++.. .+++++|....
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~--lg~~y~~g~~~~~A~~~~~~Aa-~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC--LSLVSNSQINKQKLFQYLSKAC-ELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH--HHHHTCTTSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh--HHHHHHcCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 46889999999998775 33334 9999999999999999887653 24688899999999999 89999998765
Q ss_pred hhhhcccchHhHHHHHHHHHHHH----cCChHHHHHHHHHhhcc
Q 032655 96 VMLRLLKMISSAICFLRGKAYEA----LGNCAQARLWLVSCDEF 135 (136)
Q Consensus 96 ~~~~~~~~~~a~i~~l~G~~~~~----~~~~~~A~~~y~~AL~~ 135 (136)
....+. ..+..++.+|.+|.. .++.++|+++|++|.+.
T Consensus 85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 543321 234567899999999 99999999999999753
No 169
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.62 E-value=2.9e-07 Score=70.12 Aligned_cols=125 Identities=10% Similarity=-0.047 Sum_probs=93.8
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC---ChH----HHHHHHHHHhccCChHHHHHHHhcCc-cc--------ccCcch
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN---DPA----DVYMQAQALFLGRHYRRPFHLLNSSK-IV--------LRDLRF 74 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~---~~~----~~~~la~~l~~~g~~~~A~~~l~~~~-l~--------~~~~~~ 74 (136)
.+-.-+...|+++.|+-+.++++.+.| ++. ....+|.++...|+|.+|...+++.. +. +....+
T Consensus 58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 137 (373)
T 1hz4_A 58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHH
Confidence 344556778999999999999999876 222 25778999999999999999886532 11 112345
Q ss_pred HHHHHHHHHHccChhhhhhhhhhhhc-----ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 75 RYLAAKCLEELRSGTSVCRCSVMLRL-----LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 75 ~~l~a~c~~~l~~~~ea~~~~~~~~~-----~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...+|.++...|++++|.......+. +.+.....+..+|.++...|++++|..++.+++.+
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67799999999999999875432211 12223456678999999999999999999998753
No 170
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.62 E-value=8.8e-08 Score=58.40 Aligned_cols=79 Identities=9% Similarity=-0.008 Sum_probs=35.1
Q ss_pred HHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc
Q 032655 41 DVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL 119 (136)
Q Consensus 41 ~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~ 119 (136)
.++.+|.+++..|+|.+|+..+++. ...+.++...+.+|.++..+|++++|.......+...|....++..+|.++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 3444555555555555555544332 122334444555555555555555554433322221222333444555555443
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.60 E-value=1.1e-07 Score=66.87 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCCC-h------------HHHHHHHHHHhccCChHHHHHHHhcC-cc------
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTND-P------------ADVYMQAQALFLGRHYRRPFHLLNSS-KI------ 67 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~-~------------~~~~~la~~l~~~g~~~~A~~~l~~~-~l------ 67 (136)
.+-..-......++|++|+...++++.+.|+ | ..++.+|.|+...|+|++|+...++. .+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444445566789999999999999999995 1 16888999999999999999988654 34
Q ss_pred -cccCcchH----HHHHHHHHHccChhhhhhhhh
Q 032655 68 -VLRDLRFR----YLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 68 -~~~~~~~~----~l~a~c~~~l~~~~ea~~~~~ 96 (136)
.+.+...+ |..|.++..+|+|+||+....
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~ 126 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHH
Confidence 56777888 999999999999999987554
No 172
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.60 E-value=4.7e-07 Score=74.78 Aligned_cols=114 Identities=7% Similarity=-0.094 Sum_probs=98.6
Q ss_pred hhhHHHHHHHHhccCC-ChHHHHHHHHHHhccC--ChHHHHHHHhcC-cccccCcchHHHHHHHHHHcc-Chhhhhhhhh
Q 032655 22 YSSAIFFANEVAALTN-DPADVYMQAQALFLGR--HYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELR-SGTSVCRCSV 96 (136)
Q Consensus 22 ~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g--~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~-~~~ea~~~~~ 96 (136)
+++|+-+.++++..+| +...|++.++++...| +|.+++..+++. ..++++..+++-.+.++..+| .++++++...
T Consensus 89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 9999999999999999 8999999999999999 669999988664 457789999999999999999 8988887666
Q ss_pred hhhcccchHhHHHHHHHHHHHHc--------------CChHHHHHHHHHhhcc
Q 032655 97 MLRLLKMISSAICFLRGKAYEAL--------------GNCAQARLWLVSCDEF 135 (136)
Q Consensus 97 ~~~~~~~~~a~i~~l~G~~~~~~--------------~~~~~A~~~y~~AL~~ 135 (136)
..+...|...++++.+|.++.++ +.+++|+++|.+|+++
T Consensus 169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~ 221 (567)
T 1dce_A 169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 221 (567)
T ss_dssp TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh
Confidence 55545566778889999999886 5679999999999864
No 173
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.59 E-value=4e-07 Score=55.35 Aligned_cols=80 Identities=11% Similarity=0.124 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHH
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEE 84 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~ 84 (136)
+-+..+-..+...++++.|+-+.++++...| ++..++.+|.+++..|++++|+..+++. .+.+.++...+.+|.++..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 89 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 3455666778889999999999999999999 7888999999999999999999988664 3456788899999999887
Q ss_pred cc
Q 032655 85 LR 86 (136)
Q Consensus 85 l~ 86 (136)
+|
T Consensus 90 ~g 91 (91)
T 1na3_A 90 QG 91 (91)
T ss_dssp HC
T ss_pred cC
Confidence 65
No 174
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.58 E-value=3e-07 Score=68.93 Aligned_cols=100 Identities=14% Similarity=0.073 Sum_probs=82.0
Q ss_pred CC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhh-----------------
Q 032655 36 TN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSV----------------- 96 (136)
Q Consensus 36 ~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~----------------- 96 (136)
.| +++..+.+|..+...|++.+|+..+++. ...+.++..++.+|.++.++|++++|+....
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 37 5667899999999999999999999765 3467889999999999999999999963210
Q ss_pred h-----------------hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 97 M-----------------LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 97 ~-----------------~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
. .+...|....+++.+|.++..+|++++|+..|.++|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 0 01124667778899999999999999999999999864
No 175
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.56 E-value=1.2e-06 Score=69.80 Aligned_cols=111 Identities=12% Similarity=0.039 Sum_probs=65.5
Q ss_pred CChhhHHHHHHHHhccCCChHHHHHHHHHHhccC---ChHHHHHHHhcCcccccCcchHHHHHHHHHH----ccChhhhh
Q 032655 20 HLYSSAIFFANEVAALTNDPADVYMQAQALFLGR---HYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE----LRSGTSVC 92 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g---~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~----l~~~~ea~ 92 (136)
++++.|+.|.+++... ++++..+.+|.+++..| ++++|+..+++.. ...++.+.+.+|.++.. .+++++|.
T Consensus 310 ~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 310 KNREQAISWYTKSAEQ-GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAA-AKGEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 4555555555555443 24445555565555544 4555555554432 12345556666666666 56666665
Q ss_pred hhhhhhhcccchHhHHHHHHHHHHHH----cCChHHHHHHHHHhhc
Q 032655 93 RCSVMLRLLKMISSAICFLRGKAYEA----LGNCAQARLWLVSCDE 134 (136)
Q Consensus 93 ~~~~~~~~~~~~~a~i~~l~G~~~~~----~~~~~~A~~~y~~AL~ 134 (136)
+......+. ..+..++.+|.+|.. .+++++|..+|++|++
T Consensus 388 ~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 388 IWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 543332221 134566788999988 8899999999998875
No 176
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.54 E-value=1.2e-07 Score=60.95 Aligned_cols=75 Identities=5% Similarity=-0.100 Sum_probs=64.5
Q ss_pred hhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655 23 SSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM 97 (136)
Q Consensus 23 ~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~ 97 (136)
++|+-..++++...| ++..++.+|.+++..|+|.+|+..+++. .+.+.+...++.+|.|+..+|++++|......
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 468889999999999 7888999999999999999999988664 34567788899999999999999999876554
No 177
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=1.1e-06 Score=67.95 Aligned_cols=62 Identities=15% Similarity=-0.018 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHccChhhhhhhhhh------hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 74 FRYLAAKCLEELRSGTSVCRCSVM------LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 74 ~~~l~a~c~~~l~~~~ea~~~~~~------~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+...+|..+.+.|+|++|.+.... ..++.+....++.+.|.+|..+|++++|...|++|+.+
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 455677777777888777653321 12244567777889999999999999999999999864
No 178
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.54 E-value=2.1e-07 Score=59.83 Aligned_cols=68 Identities=16% Similarity=-0.013 Sum_probs=51.6
Q ss_pred cccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 68 VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 68 ~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+.++..++.+|.++...|++++|+......+...|.....++.+|.+|..+|++++|+.+|++++++
T Consensus 15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677888888888888888888887655443333445567788888888888888888888888753
No 179
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.52 E-value=2.5e-06 Score=67.87 Aligned_cols=73 Identities=7% Similarity=-0.010 Sum_probs=57.6
Q ss_pred cCChhhHHHHHHHHhccCCChHHHHHHHHHHhc----cCChHHHHHHHhcCcccccCcchHHHHHHHHHH----ccChhh
Q 032655 19 KHLYSSAIFFANEVAALTNDPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE----LRSGTS 90 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~----l~~~~e 90 (136)
.++++.|+.|.+++... ++++..+.+|.+|.. .+++.+|+..+++.. ...++.+.+.+|.++.. .+++++
T Consensus 56 ~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKGLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 67888888888888765 577888888888888 888888888886643 23577788888888888 788888
Q ss_pred hhh
Q 032655 91 VCR 93 (136)
Q Consensus 91 a~~ 93 (136)
|+.
T Consensus 134 A~~ 136 (490)
T 2xm6_A 134 SVK 136 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 180
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.46 E-value=2.5e-06 Score=67.94 Aligned_cols=71 Identities=11% Similarity=-0.090 Sum_probs=50.0
Q ss_pred ChhhHHHHHHHHhccCC-ChHHHHHHHHHHhcc----CChHHHHHHHhcCcccccCcchHHHHHHH-H--HHccChhhhh
Q 032655 21 LYSSAIFFANEVAALTN-DPADVYMQAQALFLG----RHYRRPFHLLNSSKIVLRDLRFRYLAAKC-L--EELRSGTSVC 92 (136)
Q Consensus 21 ~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~----g~~~~A~~~l~~~~l~~~~~~~~~l~a~c-~--~~l~~~~ea~ 92 (136)
+++.|+.|.+++....| +...++.+|.+|... +++.+|+..+++.. +.++.+.+.+|.+ + ...+++++|.
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~ 271 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMM 271 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 77778888887777776 455557777777665 67777777776654 6777777777777 3 4566777765
Q ss_pred h
Q 032655 93 R 93 (136)
Q Consensus 93 ~ 93 (136)
+
T Consensus 272 ~ 272 (452)
T 3e4b_A 272 K 272 (452)
T ss_dssp H
T ss_pred H
Confidence 4
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.41 E-value=3.6e-06 Score=68.51 Aligned_cols=121 Identities=11% Similarity=-0.033 Sum_probs=93.8
Q ss_pred HHHHHcCChhhHHHHHHHHhccC-----C-ChH---HHHHHHHHHhccCChHHHHHHHhcCc------ccccCc---chH
Q 032655 14 RDCVSKHLYSSAIFFANEVAALT-----N-DPA---DVYMQAQALFLGRHYRRPFHLLNSSK------IVLRDL---RFR 75 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~-----~-~~~---~~~~la~~l~~~g~~~~A~~~l~~~~------l~~~~~---~~~ 75 (136)
.....+|+|++|+-..++++++. | +|. ....+|.+|...|+|++|..+.++.. +-+.|| ...
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34557899999999999999875 2 333 57889999999999999999876632 112343 568
Q ss_pred HHHHHHHHHccChhhhhhhhhh-------hh-cccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 76 YLAAKCLEELRSGTSVCRCSVM-------LR-LLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 76 ~l~a~c~~~l~~~~ea~~~~~~-------~~-~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+.+|..+..+|+|+||+.-... .+ .+.|.-+.+.-+++.++..++.+++|..-|++|.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999764322 12 14466777777999999999999999999998864
No 182
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.40 E-value=2.4e-06 Score=65.64 Aligned_cols=75 Identities=5% Similarity=-0.159 Sum_probs=43.5
Q ss_pred cCCh-hhHHHHHHHHhccCC-ChHHHHHHHHHHhccC--ChHHHHHHHhcCc-ccccCcchHHHHHHHH----HHc---c
Q 032655 19 KHLY-SSAIFFANEVAALTN-DPADVYMQAQALFLGR--HYRRPFHLLNSSK-IVLRDLRFRYLAAKCL----EEL---R 86 (136)
Q Consensus 19 ~~~~-~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g--~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~----~~l---~ 86 (136)
.+.+ +.|+-..++++.++| ....|+..+.++...| .+++++.+++..- ..+++..+++..+.++ ..+ +
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 4444 356666666666666 4555666666666666 6666666554432 2456666666666666 555 4
Q ss_pred Chhhhhh
Q 032655 87 SGTSVCR 93 (136)
Q Consensus 87 ~~~ea~~ 93 (136)
+++++++
T Consensus 125 ~~~~EL~ 131 (306)
T 3dra_A 125 DPYREFD 131 (306)
T ss_dssp CTHHHHH
T ss_pred CHHHHHH
Confidence 5555543
No 183
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.37 E-value=8.2e-06 Score=62.66 Aligned_cols=127 Identities=7% Similarity=-0.096 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHH----hcc---CChHHHHHHHhcC-cccccCcchHHHH
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQAL----FLG---RHYRRPFHLLNSS-KIVLRDLRFRYLA 78 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l----~~~---g~~~~A~~~l~~~-~l~~~~~~~~~l~ 78 (136)
..|..+-..+....+++|+-+.++++..+| +...|++.+.++ ... +++.+++.++++. ..++++..+++-.
T Consensus 71 n~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R 150 (306)
T 3dra_A 71 IYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYR 150 (306)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344444433322389999999999999999 899999999999 766 7899999988665 3478999999999
Q ss_pred HHHHHHccChh--hhhhhhhhhhcccchHhHHHHHHHHHHHHcCChH------HHHHHHHHhhc
Q 032655 79 AKCLEELRSGT--SVCRCSVMLRLLKMISSAICFLRGKAYEALGNCA------QARLWLVSCDE 134 (136)
Q Consensus 79 a~c~~~l~~~~--ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~------~A~~~y~~AL~ 134 (136)
+.++..+|.++ ++++.....++..|..-+++..+|.+...+++.. ++++++.++++
T Consensus 151 ~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~ 214 (306)
T 3dra_A 151 KWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV 214 (306)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence 99999999998 7776555444444556678899999999987532 35666666654
No 184
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.36 E-value=3.1e-06 Score=67.35 Aligned_cols=107 Identities=14% Similarity=-0.012 Sum_probs=67.5
Q ss_pred CChhhHHHHHHHHhccCCChHHHHHHHHH-H--hccCChHHHHHHHhcCcccccCcchHHHHHHHHHHcc-----Chhhh
Q 032655 20 HLYSSAIFFANEVAALTNDPADVYMQAQA-L--FLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELR-----SGTSV 91 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~~~~~~~~la~~-l--~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~-----~~~ea 91 (136)
.+++.|+.|.+++. .++++..+.+|.+ + ...|++.+|+..+++.. ...++.+.+.+|.++. .| ++++|
T Consensus 231 ~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa-~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 231 PDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR-AADQPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp CCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred CCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 47778888888876 2377788888887 4 46778888888776643 2356777788888777 44 77777
Q ss_pred hhhhhhhhcccchHhHHHHHHHHHHHH----cCChHHHHHHHHHhh
Q 032655 92 CRCSVMLRLLKMISSAICFLRGKAYEA----LGNCAQARLWLVSCD 133 (136)
Q Consensus 92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~----~~~~~~A~~~y~~AL 133 (136)
........ +..+...+.+|.+|.. ..++++|+.+|++|.
T Consensus 307 ~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 349 (452)
T 3e4b_A 307 EAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAA 349 (452)
T ss_dssp HHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 65433222 2233444555655555 225556666665554
No 185
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.35 E-value=2e-06 Score=69.06 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=77.2
Q ss_pred hhHHHHHHHHhccCC-ChHHHHHHHHHHhc-------cCChH-------HHHHHHhcCc--ccccCcchHHHHHHHHHHc
Q 032655 23 SSAIFFANEVAALTN-DPADVYMQAQALFL-------GRHYR-------RPFHLLNSSK--IVLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 23 ~~Alf~aekl~~~~~-~~~~~~~la~~l~~-------~g~~~-------~A~~~l~~~~--l~~~~~~~~~l~a~c~~~l 85 (136)
+.|+...++++..+| +++-|+.+|..+.. .|++. +|..+++++- +.+.+...++.+|..+.+.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 367788888888888 77788888888775 68876 7888776653 3566777888888888888
Q ss_pred cChhhhhhhhhhhhcccchH-hHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 86 RSGTSVCRCSVMLRLLKMIS-SAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 86 ~~~~ea~~~~~~~~~~~~~~-a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
|++++|.+.....+...|.. +.++...|.++.++|+.++|...|.+|++
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 88888876544332222221 23555666666666666666666666654
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.34 E-value=5.3e-06 Score=68.45 Aligned_cols=119 Identities=8% Similarity=-0.127 Sum_probs=99.4
Q ss_pred HHcCC-hhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC----------hHHHHHHHhcC-cccccCcchHHHHHHHHH
Q 032655 17 VSKHL-YSSAIFFANEVAALTN-DPADVYMQAQALFLGRH----------YRRPFHLLNSS-KIVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 17 l~~~~-~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~----------~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~ 83 (136)
...+. .++|+-+.++++.++| +...|++.+.++...|+ +++++..+++. ..++++..+++..+-++.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444 4677999999999999 78899999999999999 99999988665 347789999999999999
Q ss_pred Hcc--ChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcC-ChHHHHHHHHHhhcc
Q 032655 84 ELR--SGTSVCRCSVMLRLLKMISSAICFLRGKAYEALG-NCAQARLWLVSCDEF 135 (136)
Q Consensus 84 ~l~--~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~-~~~~A~~~y~~AL~~ 135 (136)
+++ +|+++++.....++..|....+|..+|-+...+| ..++|++++.++++.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 999 6699887665544433446677899999999999 999999999999864
No 187
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.32 E-value=3.1e-06 Score=68.35 Aligned_cols=109 Identities=12% Similarity=0.050 Sum_probs=60.7
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhh
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
+-..|.+.|+|++|..+.+++ +++..+|.|+++.|+|..|++..++. .++..+--...+|.+.|+|+.|
T Consensus 128 IGd~~~~~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 128 VGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp ---------CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHH
Confidence 334455556666666655544 35566666666666666666655554 2445555555666666666666
Q ss_pred hhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 92 CRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 92 ~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..... .+...|.. ..-+..+|++.|++++|+..++++|.+
T Consensus 197 ~~~~l-~L~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 197 QMCGL-HIVVHADE---LEELINYYQDRGYFEELITMLEAALGL 236 (449)
T ss_dssp HHTTT-TTTTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHH-HHHhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 43222 11111211 123568899999999999999999864
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.32 E-value=1.3e-06 Score=55.34 Aligned_cols=66 Identities=18% Similarity=-0.012 Sum_probs=42.1
Q ss_pred ccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 69 LRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 69 ~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
+.++..++.+|.+++++|+|++|+......+...|....+++.+|.+|..+|++++|+.+|++|++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666777777777777777776655443332333445666777777777777777777777765
No 189
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.30 E-value=6e-06 Score=64.23 Aligned_cols=129 Identities=9% Similarity=-0.082 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcC--------ChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC--hHHHHHHHhcC-cccccCcch
Q 032655 7 EKLRGLVRDCVSKH--------LYSSAIFFANEVAALTN-DPADVYMQAQALFLGRH--YRRPFHLLNSS-KIVLRDLRF 74 (136)
Q Consensus 7 ~~lr~~i~~~l~~~--------~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~--~~~A~~~l~~~-~l~~~~~~~ 74 (136)
...|..+-..+... .+++++-+.++++..+| ++..|++.+.++...|. +.+++.++.+. ..++++..+
T Consensus 67 Wn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~A 146 (331)
T 3dss_A 67 WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHC 146 (331)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHH
Confidence 34455555544432 37899999999999999 99999999999999995 89999988664 447899999
Q ss_pred HHHHHHHHHHccC-hhhhhhhhhhhhcccchHhHHHHHHHHHHHHc--------------CChHHHHHHHHHhhcc
Q 032655 75 RYLAAKCLEELRS-GTSVCRCSVMLRLLKMISSAICFLRGKAYEAL--------------GNCAQARLWLVSCDEF 135 (136)
Q Consensus 75 ~~l~a~c~~~l~~-~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~--------------~~~~~A~~~y~~AL~~ 135 (136)
++-.+.++..+|. ++++++.....+...|...+++..+|.+...+ +.++++++++.+|+..
T Consensus 147 W~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 147 WDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999 57877765544444455677788888888887 5578999999999853
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.28 E-value=4.1e-06 Score=68.20 Aligned_cols=91 Identities=11% Similarity=0.024 Sum_probs=70.4
Q ss_pred HHHHHhccCChHHHHHHHhcCc------ccccCc---chHHHHHHHHHHccChhhhhhhhhh-------hhc-ccchHhH
Q 032655 45 QAQALFLGRHYRRPFHLLNSSK------IVLRDL---RFRYLAAKCLEELRSGTSVCRCSVM-------LRL-LKMISSA 107 (136)
Q Consensus 45 la~~l~~~g~~~~A~~~l~~~~------l~~~~~---~~~~l~a~c~~~l~~~~ea~~~~~~-------~~~-~~~~~a~ 107 (136)
.+..+...|+|++|..++++.. +-+.|+ ...+.+|..|..+|+|++|+.-... .+. ..|.-+.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3455778999999988775521 222343 6789999999999999999764322 122 4577788
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 108 ICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 108 i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+..+|.+|..+|++++|...|++||++
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i 422 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAI 422 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999999975
No 191
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.28 E-value=6.6e-06 Score=66.03 Aligned_cols=121 Identities=8% Similarity=-0.094 Sum_probs=81.3
Q ss_pred HHHHcCChhhHHHHHHHHhccCC-Ch-HHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHH-HHHccChhh
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN-DP-ADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKC-LEELRSGTS 90 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~-~~-~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c-~~~l~~~~e 90 (136)
.....|+++.|.-..++++...| ++ ..+..+|..+.+.|++++|..+++++.- .+.+.....-.|.. +...|++++
T Consensus 330 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 330 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhH
Confidence 34456788888888888888877 44 3677778888888888888887766432 22223332322322 335788888
Q ss_pred hhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 91 VCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 91 a~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|.......+...|....++...|.++.++|+.++|...|++|+..
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 766544333333445667778888888899999999999988753
No 192
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.23 E-value=2.5e-06 Score=53.04 Aligned_cols=84 Identities=10% Similarity=-0.104 Sum_probs=57.0
Q ss_pred HHHHHHHHhccCChHHHHHHHhcCc-ccccCcc-hHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLR-FRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL 119 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~-~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~ 119 (136)
.+..|.+++..|+|++|+..+++.. ..+.++. .++.+|.|+..+|++++|++.....+...|....+++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 3567889999999999998886643 3556777 88899999999999999987665443322322332211
Q ss_pred CChHHHHHHHHHhh
Q 032655 120 GNCAQARLWLVSCD 133 (136)
Q Consensus 120 ~~~~~A~~~y~~AL 133 (136)
++..+|..+|++++
T Consensus 75 ~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 KMVMDILNFYNKDM 88 (99)
T ss_dssp HHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHh
Confidence 45556666666554
No 193
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.22 E-value=7.1e-06 Score=65.83 Aligned_cols=86 Identities=10% Similarity=0.004 Sum_probs=63.2
Q ss_pred hccCChHHHHHHHhcC------cccccCc---chHHHHHHHHHHccChhhhhhhhhh-------hhc-ccchHhHHHHHH
Q 032655 50 FLGRHYRRPFHLLNSS------KIVLRDL---RFRYLAAKCLEELRSGTSVCRCSVM-------LRL-LKMISSAICFLR 112 (136)
Q Consensus 50 ~~~g~~~~A~~~l~~~------~l~~~~~---~~~~l~a~c~~~l~~~~ea~~~~~~-------~~~-~~~~~a~i~~l~ 112 (136)
...|+|++|..++++. .+-+.|+ ...+.+|..|..+|+|++|+.-... .+. ..|.-+..+..+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3457778877766542 1222343 5677889999999999998764322 121 356777788899
Q ss_pred HHHHHHcCChHHHHHHHHHhhcc
Q 032655 113 GKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 113 G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
|.+|..+|++++|...|++||++
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999999976
No 194
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.20 E-value=1.7e-05 Score=62.18 Aligned_cols=113 Identities=6% Similarity=-0.148 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHhccCC-ChHHHHHHHHHHhcc-C-ChHHHHHHHhcC-cccccCcchHHHHHHHHHHccChh--------
Q 032655 22 YSSAIFFANEVAALTN-DPADVYMQAQALFLG-R-HYRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGT-------- 89 (136)
Q Consensus 22 ~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~-g-~~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~-------- 89 (136)
+++++-+.++++..+| +...|++.+.++... | ++.+++.++++. ..++++..+++-.+-++..+|.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~ 184 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWG 184 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHH
Confidence 5555555555555555 555555555555554 4 555555555332 234455555555555555555555
Q ss_pred hhhhhhhhhhcccchHhHHHHHHHHHHHHcCC-------hHHHHHHHHHhhc
Q 032655 90 SVCRCSVMLRLLKMISSAICFLRGKAYEALGN-------CAQARLWLVSCDE 134 (136)
Q Consensus 90 ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~-------~~~A~~~y~~AL~ 134 (136)
++++.....+...|..-+++..+|.+..++++ .++++++++++++
T Consensus 185 eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~ 236 (349)
T 3q7a_A 185 SELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH 236 (349)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 33322222222334566778888999988887 6888888888875
No 195
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.19 E-value=2.3e-05 Score=60.97 Aligned_cols=126 Identities=8% Similarity=-0.142 Sum_probs=100.5
Q ss_pred HHHHHHHHHcCChh-hHHHHHHHHhccCC-ChHHHHHHHHHHhccCC----------hHHHHHHHhcCc-ccccCcchHH
Q 032655 10 RGLVRDCVSKHLYS-SAIFFANEVAALTN-DPADVYMQAQALFLGRH----------YRRPFHLLNSSK-IVLRDLRFRY 76 (136)
Q Consensus 10 r~~i~~~l~~~~~~-~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~----------~~~A~~~l~~~~-l~~~~~~~~~ 76 (136)
+..|......+.++ .|+-+.++++.++| +...|++-+.++...|. +.+++.++...- .++++..+++
T Consensus 33 ~~~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~ 112 (331)
T 3dss_A 33 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWH 112 (331)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34444455677777 79999999999999 77889999999988776 688888886643 3679999999
Q ss_pred HHHHHHHHccC--hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCC-hHHHHHHHHHhhcc
Q 032655 77 LAAKCLEELRS--GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGN-CAQARLWLVSCDEF 135 (136)
Q Consensus 77 l~a~c~~~l~~--~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~-~~~A~~~y~~AL~~ 135 (136)
..+.++..+++ ++++++.....++..|-.-.++..+|-+...+|. .+++++++.++++.
T Consensus 113 hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 113 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 99999999995 7888775554443334456678999999999999 59999999998863
No 196
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.13 E-value=1.2e-05 Score=64.28 Aligned_cols=90 Identities=11% Similarity=-0.057 Sum_probs=64.1
Q ss_pred HHHHhccCChHHHHHHHhcCc------ccccC---cchHHHHHHHHHHccChhhhhhhhhh-------hhc-ccchHhHH
Q 032655 46 AQALFLGRHYRRPFHLLNSSK------IVLRD---LRFRYLAAKCLEELRSGTSVCRCSVM-------LRL-LKMISSAI 108 (136)
Q Consensus 46 a~~l~~~g~~~~A~~~l~~~~------l~~~~---~~~~~l~a~c~~~l~~~~ea~~~~~~-------~~~-~~~~~a~i 108 (136)
..-+...|+|++|+.+.++.. +.+.| ......+|..|..+|+|++|+..... .+. ..|.-+..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556677777776654321 12233 35677888888888999988764322 121 34677777
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++.+|.+|..+|++++|...|++||++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999999975
No 197
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.05 E-value=2e-05 Score=48.73 Aligned_cols=64 Identities=8% Similarity=0.106 Sum_probs=53.8
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC-ChH-HHHHHHHHHhccCChHHHHHHHhcC-cccccCcchH
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN-DPA-DVYMQAQALFLGRHYRRPFHLLNSS-KIVLRDLRFR 75 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~-~~~~la~~l~~~g~~~~A~~~l~~~-~l~~~~~~~~ 75 (136)
....++..++|+.|+-..++++...| ++. .++.+|.+++..|++.+|+..+++. .+.+.++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 44566778999999999999999999 778 8999999999999999999988765 3355666554
No 198
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.05 E-value=2.1e-06 Score=69.39 Aligned_cols=103 Identities=6% Similarity=-0.135 Sum_probs=33.2
Q ss_pred HcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655 18 SKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM 97 (136)
Q Consensus 18 ~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~ 97 (136)
..|+|++|+-+-++.....|++.--.-++.||.+.|++.++..+++.. +...++..|.+|++.|+|++|.....
T Consensus 73 ~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~p-----n~~a~~~IGd~~~~~g~yeeA~~~Y~- 146 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP-----NNAHIQQVGDRCYDEKMYDAAKLLYN- 146 (449)
T ss_dssp ------------------------------------CHHHHTTTTTCC---------------------CTTTHHHHHH-
T ss_pred hCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCC-----cHHHHHHHHHHHHHcCCHHHHHHHHH-
Confidence 344444444444444433223222333444555555555554444431 12344555555555555555543322
Q ss_pred hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 98 LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 98 ~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
.++-+..+|.++-++|++++|+++|++|-
T Consensus 147 -------~a~n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 147 -------NVSNFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp -------HTTCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred -------HhhhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 22345578999999999999999999884
No 199
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=1.7e-05 Score=61.02 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=85.7
Q ss_pred CChhhHHHHHHHHhccCC----C---hHHHHHHHHHHhccCChHHHHHHHhcCcc-------cccCcchHHHHHHHHHHc
Q 032655 20 HLYSSAIFFANEVAALTN----D---PADVYMQAQALFLGRHYRRPFHLLNSSKI-------VLRDLRFRYLAAKCLEEL 85 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~----~---~~~~~~la~~l~~~g~~~~A~~~l~~~~l-------~~~~~~~~~l~a~c~~~l 85 (136)
++++.|+.+.++++...+ . ......+|.++...|+|.+|+.++++... .+....+....|++|..+
T Consensus 109 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (434)
T 4b4t_Q 109 DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL 188 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence 667777777777766553 1 23467799999999999999998865321 112346889999999999
Q ss_pred cChhhhhhhhhhh------hc-ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 86 RSGTSVCRCSVML------RL-LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 86 ~~~~ea~~~~~~~------~~-~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
|+|++|....... .. +....+.++...|.++...+++++|..+|.++++
T Consensus 189 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 189 RNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999997654321 11 1234566777889999999999999999999875
No 200
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.02 E-value=5.4e-05 Score=59.26 Aligned_cols=115 Identities=9% Similarity=-0.057 Sum_probs=96.9
Q ss_pred CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccC-ChHHHHHHHhcCc-ccccCcchHHHHHHHHHHc-c-Chhhhhhh
Q 032655 20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGR-HYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEEL-R-SGTSVCRC 94 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g-~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l-~-~~~ea~~~ 94 (136)
...+.|+-+.++++.++| +...|+..+.++...| .+++++.+++..- ..+++..+++..+.++..+ + +++++++.
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 445789999999999999 7888999999999999 4999999886653 3678999999999999999 7 88887765
Q ss_pred hhhhhcccchHhHHHHHHHHHHHHcCChH--------HHHHHHHHhhc
Q 032655 95 SVMLRLLKMISSAICFLRGKAYEALGNCA--------QARLWLVSCDE 134 (136)
Q Consensus 95 ~~~~~~~~~~~a~i~~l~G~~~~~~~~~~--------~A~~~y~~AL~ 134 (136)
....+...|..-.++..+|-+...+|..+ ++++++.++++
T Consensus 148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR 195 (349)
T ss_dssp HHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence 55444444556778899999999999888 99999998875
No 201
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.99 E-value=8.4e-05 Score=67.34 Aligned_cols=119 Identities=12% Similarity=-0.029 Sum_probs=73.8
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhh
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
+-......|++++|+-..+|+ .++++++..|.++...|+|++|+.++..+.-..+.+..-.-.|.||.+++++++.
T Consensus 1111 LAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleel 1186 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAEL 1186 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHH
Confidence 334566678888888887774 5777788888888888888888887744321112222222366666776666654
Q ss_pred hhhhh------h-----h-hc-cc-------chHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 92 CRCSV------M-----L-RL-LK-------MISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 92 ~~~~~------~-----~-~~-~~-------~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.+... . . .+ +. -..++-+..+|.+|.++|++++|+++|++|..
T Consensus 1187 e~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1187 EEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 32100 0 0 00 00 01234555779999999999999999988753
No 202
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.99 E-value=6.1e-05 Score=58.11 Aligned_cols=68 Identities=12% Similarity=0.020 Sum_probs=44.0
Q ss_pred HHHHHHHHhccC-CChHHHHHHHHHHhccCChHHHHHHHhcC-cccc--cCcchHHHHHHHHHHccChhhhh
Q 032655 25 AIFFANEVAALT-NDPADVYMQAQALFLGRHYRRPFHLLNSS-KIVL--RDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 25 Alf~aekl~~~~-~~~~~~~~la~~l~~~g~~~~A~~~l~~~-~l~~--~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
|+-..+++++.. +++..++.+|+++...|++++|+..+.+. ...+ .+++++.+.++++.++|+.+.|.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 666666666654 35555667777777777777777776554 2222 46677777777777777777763
No 203
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.97 E-value=4.8e-05 Score=60.05 Aligned_cols=115 Identities=12% Similarity=-0.073 Sum_probs=83.0
Q ss_pred CChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCCh-----------HHHHHHHhcCcccccCcchHHHHHHHHHHccC
Q 032655 20 HLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHY-----------RRPFHLLNSSKIVLRDLRFRYLAAKCLEELRS 87 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~-----------~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~ 87 (136)
.....|+-+.+++++++| .+..+-.++.|+.....+ .+++.......+.+..+.++-.+|..++-.|+
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd 292 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK 292 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC
Confidence 345789999999999999 566777777777532111 12333222334456777888888888888899
Q ss_pred hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 88 GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 88 ~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+++|.......+.-.| ....+.++|+++.-.|+.++|++.|.+|+.+
T Consensus 293 ~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999886654333223 3455678899999999999999999999864
No 204
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.89 E-value=0.00014 Score=65.85 Aligned_cols=93 Identities=11% Similarity=-0.049 Sum_probs=68.4
Q ss_pred CCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhc---------------
Q 032655 36 TNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRL--------------- 100 (136)
Q Consensus 36 ~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~--------------- 100 (136)
.|+..+++..|.+++..|+|..|..+.++. .-+.-+|.|+.++|+|++|++...+..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Confidence 346778888888888888888888888774 3667788888888888888764321100
Q ss_pred ----------ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 101 ----------LKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 101 ----------~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.+...+.-+.-++..|++.|.+++|+..|+.+|.+
T Consensus 1265 Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1265 EFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 11123333446789999999999999999999864
No 205
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.81 E-value=9e-05 Score=57.14 Aligned_cols=118 Identities=9% Similarity=-0.087 Sum_probs=82.2
Q ss_pred HHHHHcCChhhHHHHHHHHhccCC---ChHHHHHHHHHHhccCChHHHHHHHhcCccccc-----CcchHHHHHHH--HH
Q 032655 14 RDCVSKHLYSSAIFFANEVAALTN---DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLR-----DLRFRYLAAKC--LE 83 (136)
Q Consensus 14 ~~~l~~~~~~~Alf~aekl~~~~~---~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~-----~~~~~~l~a~c--~~ 83 (136)
.-+...|++++|+.|..+.+...| +.+.+...++++...|+++.|.+.+++..-... .-..+..++.+ .+
T Consensus 108 ~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l 187 (310)
T 3mv2_B 108 TAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKF 187 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHH
Confidence 334456999999999999988875 566788999999999999999999977532111 11334444444 55
Q ss_pred Hcc--ChhhhhhhhhhhhcccchHh--HHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 84 ELR--SGTSVCRCSVMLRLLKMISS--AICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 84 ~l~--~~~ea~~~~~~~~~~~~~~a--~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
..| ++++|......-.+ .... +...+.+ ++..+|++++|...++..++
T Consensus 188 ~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 188 ATNKETATSNFYYYEELSQ--TFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHS
T ss_pred HhCCccHHHHHHHHHHHHH--hCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHH
Confidence 556 78887654443222 3321 3455666 99999999999999986654
No 206
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.80 E-value=4.8e-05 Score=48.70 Aligned_cols=58 Identities=3% Similarity=0.011 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcCcc-c-------ccCcchHHHHHHHHHHccChhhhhhhh
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSSKI-V-------LRDLRFRYLAAKCLEELRSGTSVCRCS 95 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~-------~~~~~~~~l~a~c~~~l~~~~ea~~~~ 95 (136)
+++|.+.+|..++..|+|.+|+.-++.+.- . .....+.+.+|.|++++|++++|....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~ 69 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 455666666666666666666554433211 0 123345556666666666666665543
No 207
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.65 E-value=0.00019 Score=45.44 Aligned_cols=60 Identities=12% Similarity=-0.058 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHhccCC---hHHHHHHHhcC-cccccCcchHHHHHHHHHHccChhhhhhhhhh
Q 032655 38 DPADVYMQAQALFLGRH---YRRPFHLLNSS-KIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM 97 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~---~~~A~~~l~~~-~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~ 97 (136)
+|+.++.+|++++..++ ..+|..++++. .+++.++..++++|..+++.|+|++|++....
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~ 68 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVL 68 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 78889999999976665 68888888665 45788899999999999999999999875544
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.54 E-value=0.0012 Score=52.60 Aligned_cols=112 Identities=3% Similarity=-0.113 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccC-----C-ChH---HHHHHHHHHhccCChHHHHHHHhcCc------ccccCc
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALT-----N-DPA---DVYMQAQALFLGRHYRRPFHLLNSSK------IVLRDL 72 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~-----~-~~~---~~~~la~~l~~~g~~~~A~~~l~~~~------l~~~~~ 72 (136)
.+-..+..+-.++.|++|+-..+++++.. | +|. ....+|.+|...|+|++|+.+.++.. +-+.||
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 33444566778899999999999999875 2 332 47779999999999999999886532 112344
Q ss_pred ---chHHHHHHHHHHccChhhhhhhhhhh-------hc-ccchHhHHHHHHHHHHHHc
Q 032655 73 ---RFRYLAAKCLEELRSGTSVCRCSVML-------RL-LKMISSAICFLRGKAYEAL 119 (136)
Q Consensus 73 ---~~~~l~a~c~~~l~~~~ea~~~~~~~-------~~-~~~~~a~i~~l~G~~~~~~ 119 (136)
...+.+|..+..+|+|+||+...... +. +.|.-+.+.-+++.+...+
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 56889999999999999998643321 11 3455666666777776544
No 209
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.49 E-value=0.0002 Score=45.72 Aligned_cols=71 Identities=7% Similarity=-0.027 Sum_probs=54.7
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC--------ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN--------DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAA 79 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~--------~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a 79 (136)
+-.+-..+..+++|..|+.|.++++...+ .++-...+|.|++..|++.+|+.++++.. +.|.+.......+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 34566788899999999999999997641 23346789999999999999999887653 4666666655444
No 210
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.35 E-value=0.00075 Score=46.89 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=49.2
Q ss_pred CChHHHHHHHHHHhccC---ChHHHHHHHhcCc-cc-c-cCcchHHHHHHHHHHccChhhhhhhhh
Q 032655 37 NDPADVYMQAQALFLGR---HYRRPFHLLNSSK-IV-L-RDLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 37 ~~~~~~~~la~~l~~~g---~~~~A~~~l~~~~-l~-~-~~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
++++..|.+|+||..++ +.++++.+|+..- .. + .+.+|.|.+|..++++|+|++|.....
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 38899999999999999 5669998886532 22 3 567999999999999999999987544
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.29 E-value=0.00091 Score=42.22 Aligned_cols=67 Identities=13% Similarity=-0.204 Sum_probs=52.0
Q ss_pred ccCcchHHHHHHHHHHccC---hhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 69 LRDLRFRYLAAKCLEELRS---GTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 69 ~~~~~~~~l~a~c~~~l~~---~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.++..++.+|.+++-.+. .++|.......+...|......+++|.++...|++++|+..|+++|+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5778899999999987666 567766554433333445566688999999999999999999999864
No 212
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.26 E-value=0.0031 Score=42.42 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHhccCChHH---HHHHHhcC-ccc-c-cCcchHHHHHHHHHHccChhhhhhhhh
Q 032655 37 NDPADVYMQAQALFLGRHYRR---PFHLLNSS-KIV-L-RDLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 37 ~~~~~~~~la~~l~~~g~~~~---A~~~l~~~-~l~-~-~~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
|+++..|.+|+|+..+++... ++.+|+.. ... + ..-+|.|.+|..++++|+|++|.....
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 489999999999999999776 88888652 212 2 455899999999999999999987544
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.21 E-value=0.002 Score=51.57 Aligned_cols=78 Identities=5% Similarity=-0.051 Sum_probs=61.0
Q ss_pred HcCChhhHHHHHHHHhccC-----C-ChH---HHHHHHHHHhccCChHHHHHHHhcCcc------cccCc---chHHHHH
Q 032655 18 SKHLYSSAIFFANEVAALT-----N-DPA---DVYMQAQALFLGRHYRRPFHLLNSSKI------VLRDL---RFRYLAA 79 (136)
Q Consensus 18 ~~~~~~~Alf~aekl~~~~-----~-~~~---~~~~la~~l~~~g~~~~A~~~l~~~~l------~~~~~---~~~~l~a 79 (136)
..|+|++|+-..++++++. | +|. ....+|.+|...|+|++|..+.++..- -+.|| ...+.+|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3578999999999999864 3 333 477899999999999999998866321 12344 5688999
Q ss_pred HHHHHccChhhhhhhh
Q 032655 80 KCLEELRSGTSVCRCS 95 (136)
Q Consensus 80 ~c~~~l~~~~ea~~~~ 95 (136)
..+..+|+|+||+.-.
T Consensus 390 ~~~~~qg~~~eA~~~~ 405 (433)
T 3qww_A 390 RLYMGLENKAAGEKAL 405 (433)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHhccCHHHHHHHH
Confidence 9999999999997643
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.97 E-value=0.0027 Score=42.22 Aligned_cols=77 Identities=6% Similarity=-0.026 Sum_probs=64.5
Q ss_pred cCChhhHHHHHHHHhccCCChHHHHHHHHHHhc----cCChHHHHHHHhcCcccccCcchHHHHHHHHHH----ccChhh
Q 032655 19 KHLYSSAIFFANEVAALTNDPADVYMQAQALFL----GRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEE----LRSGTS 90 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~----~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~----l~~~~e 90 (136)
...++.|+.|.+++... ++++..+.+|.+|.. .+++.+|+..++++- ...++.+.+.+|.++.. .+++++
T Consensus 38 g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g~~~a~~~Lg~~y~~G~g~~~d~~~ 115 (138)
T 1klx_A 38 QINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GLNDQDGCLILGYKQYAGKGVVKNEKQ 115 (138)
T ss_dssp TSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH-cCCCHHHHHHHHHHHHCCCCCCcCHHH
Confidence 34567799999999876 688999999999998 899999999997753 23678899999999999 899999
Q ss_pred hhhhhhh
Q 032655 91 VCRCSVM 97 (136)
Q Consensus 91 a~~~~~~ 97 (136)
|......
T Consensus 116 A~~~~~~ 122 (138)
T 1klx_A 116 AVKTFEK 122 (138)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9765443
No 215
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.003 Score=53.96 Aligned_cols=58 Identities=17% Similarity=0.125 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~ 65 (136)
-|...++.++.+++|+-|+-.|.+++...| +-..|+.|+.||...|+|+.|+-.|.+.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 467778899999999999999999999999 7899999999999999999999988775
No 216
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.53 E-value=0.002 Score=44.92 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=42.5
Q ss_pred ChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccC-----------ChHHHHHHHhcCc-ccccC
Q 032655 21 LYSSAIFFANEVAALTN-DPADVYMQAQALFLGR-----------HYRRPFHLLNSSK-IVLRD 71 (136)
Q Consensus 21 ~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g-----------~~~~A~~~l~~~~-l~~~~ 71 (136)
.+++|+-..++++.++| .++.++.+|.+|+..| +|++|+..++++- +.+.+
T Consensus 61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 37799999999999999 7889999999999875 8999999887653 34443
No 217
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.48 E-value=0.01 Score=40.23 Aligned_cols=60 Identities=12% Similarity=-0.045 Sum_probs=47.5
Q ss_pred CChHHHHHHHHHHhccCChH---HHHHHHhcCc-ccc-cCcchHHHHHHHHHHccChhhhhhhhh
Q 032655 37 NDPADVYMQAQALFLGRHYR---RPFHLLNSSK-IVL-RDLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 37 ~~~~~~~~la~~l~~~g~~~---~A~~~l~~~~-l~~-~~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
|+++..|.+|+|+..+.+.. +++.+|+..- ..+ ..-+|.|.+|..++++|+|++|....+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d 102 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 102 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 58999999999999998863 6788775532 122 346899999999999999999976544
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.47 E-value=0.0061 Score=42.25 Aligned_cols=67 Identities=10% Similarity=-0.093 Sum_probs=52.0
Q ss_pred ccCcchHHHHHHHHHHcc---Chhhhhhhhhhhhccc-c-hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 69 LRDLRFRYLAAKCLEELR---SGTSVCRCSVMLRLLK-M-ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 69 ~~~~~~~~l~a~c~~~l~---~~~ea~~~~~~~~~~~-~-~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+.+..+.+-+|.|+.+.+ +.++++.-....+... | .....+|++|..|-++|++++|..++.++|++
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 367899999999999998 5557765443322222 3 35667889999999999999999999999874
No 219
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.34 E-value=0.028 Score=38.53 Aligned_cols=61 Identities=13% Similarity=-0.027 Sum_probs=48.2
Q ss_pred CCChHHHHHHHHHHhccCChH---HHHHHHhcCcc-cc-cCcchHHHHHHHHHHccChhhhhhhhh
Q 032655 36 TNDPADVYMQAQALFLGRHYR---RPFHLLNSSKI-VL-RDLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 36 ~~~~~~~~~la~~l~~~g~~~---~A~~~l~~~~l-~~-~~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
.|+++..|.+|+|+..+.+.. +++.+|+..-- .+ ..-+|.|.+|..++++|+|++|....+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 479999999999999999865 67777765321 11 345899999999999999999976443
No 220
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.76 E-value=0.15 Score=41.18 Aligned_cols=86 Identities=12% Similarity=0.005 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccC--CChHHHHHHHHHHhccC---------ChHHHHHHHhcCcc--cccCcch
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALT--NDPADVYMQAQALFLGR---------HYRRPFHLLNSSKI--VLRDLRF 74 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~--~~~~~~~~la~~l~~~g---------~~~~A~~~l~~~~l--~~~~~~~ 74 (136)
.++..|..|-..|+++.|+-+.+...... |+.-..-.+-.++...| ...+|..+++.-.. ...+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 46778888888999999999998877543 45444333333443333 35667766644211 2235556
Q ss_pred HHHHHHHHHHccChhhhhh
Q 032655 75 RYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 75 ~~l~a~c~~~l~~~~ea~~ 93 (136)
+..+-.+|.+.|++++|.+
T Consensus 108 yn~lI~~~~~~g~~~~A~~ 126 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFD 126 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHH
Confidence 6677777777888887753
No 221
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.52 E-value=0.15 Score=43.03 Aligned_cols=113 Identities=7% Similarity=-0.043 Sum_probs=84.0
Q ss_pred hhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHH-HHHhcCcc-cccCcchHHHHHHHHHHccChhhhhhhhhhhh
Q 032655 23 SSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPF-HLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVCRCSVMLR 99 (136)
Q Consensus 23 ~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~-~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~ 99 (136)
+-..+..++++..+| .++-|+.+|+-+-..|+..+|. .+++++-. .+.+...+..++......|++++|-+.....+
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345788999999999 8888999999999999998997 88866532 44555667779999999999998865332211
Q ss_pred c-----------ccc-----------hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 100 L-----------LKM-----------ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 100 ~-----------~~~-----------~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+ +.| ..+.++........+.|+.+.|...|.+|++.
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 112 13346667778888888999999999988753
No 222
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.48 E-value=0.065 Score=41.90 Aligned_cols=61 Identities=7% Similarity=-0.067 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655 4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
..+.-+..++...+..+.++.|+-+++++++..| +.+-+..+..+|+..|+..+|+...+.
T Consensus 169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444556677888899999999999999999999 666788899999999999999987765
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.40 E-value=0.12 Score=41.83 Aligned_cols=111 Identities=11% Similarity=-0.065 Sum_probs=77.3
Q ss_pred hhhHHHHHHHHhcc--CCChHHHHHHHHHHhccCChHHHHHHHhcCcc--cccCcchHHHHHHHHHHccChhhhhhhhh-
Q 032655 22 YSSAIFFANEVAAL--TNDPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLRDLRFRYLAAKCLEELRSGTSVCRCSV- 96 (136)
Q Consensus 22 ~~~Alf~aekl~~~--~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~~~~~~~l~a~c~~~l~~~~ea~~~~~- 96 (136)
.+.|.-..+..... .|+....-.+..++...|++++|..+++.-.. ...+...+..+-.+|.+.|+.++|.+...
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 46677677766543 35666777788889999999999998865321 23455667777788889999999987543
Q ss_pred hhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 97 MLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 97 ~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
+...++.+....+..+=..|.+.|+.++|.+.|.+-
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 222344334445555556778899999999888763
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.25 E-value=0.05 Score=42.82 Aligned_cols=63 Identities=10% Similarity=-0.019 Sum_probs=42.0
Q ss_pred ccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhh
Q 032655 34 ALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSV 96 (136)
Q Consensus 34 ~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~ 96 (136)
...| ++....-+|..+...|++++|+..++++-....+...+.+.|.++.-.|++++|++...
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344 44555556667777788888888886654323344555678888888888888876543
No 225
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.86 E-value=0.46 Score=33.25 Aligned_cols=75 Identities=12% Similarity=0.036 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHhccC------CC--------------------hHHHHHHHHHHhccCChHHHHHH
Q 032655 8 KLRGLVRDCVSKHLYSSAIFFANEVAALT------ND--------------------PADVYMQAQALFLGRHYRRPFHL 61 (136)
Q Consensus 8 ~lr~~i~~~l~~~~~~~Alf~aekl~~~~------~~--------------------~~~~~~la~~l~~~g~~~~A~~~ 61 (136)
-+--+.+-...+++|..|.-..++++.+. |+ .|--|..|.|+...|+++.|+..
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~ 144 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAI 144 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHH
Confidence 34445556677889999998888865442 11 14579999999999999999999
Q ss_pred HhcCcccccCcchHHHHHHHH
Q 032655 62 LNSSKIVLRDLRFRYLAAKCL 82 (136)
Q Consensus 62 l~~~~l~~~~~~~~~l~a~c~ 82 (136)
|+......+.+....++|+-|
T Consensus 145 Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 145 LDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHTSCGGGCCHHHHHHHHHHC
T ss_pred HhcCCchhcCHHHHHHHHHHh
Confidence 999876668888888888754
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.75 E-value=1.4 Score=36.14 Aligned_cols=109 Identities=12% Similarity=-0.013 Sum_probs=65.9
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChh
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGT 89 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ 89 (136)
...++.....+.++.|+-++ .++..-+.++ ...|+++.|+++.+.. .++..+-.+|+.+.+.++++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~-------~~~~~~f~~~---l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNIS-------PDQDQKFELA---LKVGQLTLARDLLTDE----SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHC-------CCHHHHHHHH---HHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecC-------CCcchheehh---hhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcCCHH
Confidence 44555555556666655433 2444444444 4569999999988764 45678889999999999999
Q ss_pred hhhhhhhhh--------h---cccc----------hHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 90 SVCRCSVML--------R---LLKM----------ISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 90 ea~~~~~~~--------~---~~~~----------~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
.|+...... + .+.+ .....+..-..+|..+|++++|++.|++.
T Consensus 699 ~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 987543210 0 0000 01111122355677788888888888765
No 227
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=93.16 E-value=0.69 Score=38.91 Aligned_cols=76 Identities=7% Similarity=-0.095 Sum_probs=54.0
Q ss_pred HHHcCChhhHH-HHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCccc------------c-----------c
Q 032655 16 CVSKHLYSSAI-FFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIV------------L-----------R 70 (136)
Q Consensus 16 ~l~~~~~~~Al-f~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~------------~-----------~ 70 (136)
...++..++|. -..++++..+| ++.-++.++...-..|++++|-.++++.-.. + .
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 44567778887 88899998888 5445677899999999999998887664311 1 0
Q ss_pred CcchHHHHHHHHHHccChhhh
Q 032655 71 DLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 71 ~~~~~~l~a~c~~~l~~~~ea 91 (136)
....+..+++.....|..+.|
T Consensus 433 ~~~vWi~y~~~erR~~~l~~A 453 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAAS 453 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHH
Confidence 123466677777777777665
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.02 E-value=0.12 Score=39.47 Aligned_cols=76 Identities=8% Similarity=-0.064 Sum_probs=60.7
Q ss_pred hhhHHHHHHHHhccCCCh---HHHHHHHHHHhcc-----CChHHHHHHHhcCc-cccc-CcchHHHHHHHHHHc-cChhh
Q 032655 22 YSSAIFFANEVAALTNDP---ADVYMQAQALFLG-----RHYRRPFHLLNSSK-IVLR-DLRFRYLAAKCLEEL-RSGTS 90 (136)
Q Consensus 22 ~~~Alf~aekl~~~~~~~---~~~~~la~~l~~~-----g~~~~A~~~l~~~~-l~~~-~~~~~~l~a~c~~~l-~~~~e 90 (136)
.+.|.-..+|+++++|+. .....+|..|+.. |+.++|..+++++. +.+. ++...+.+|.-+... |++++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 457788889999999963 3577889888884 99999999997764 4554 499999999999884 99999
Q ss_pred hhhhhhh
Q 032655 91 VCRCSVM 97 (136)
Q Consensus 91 a~~~~~~ 97 (136)
+......
T Consensus 259 a~~~L~k 265 (301)
T 3u64_A 259 FDEALDR 265 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8765543
No 229
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=92.96 E-value=1.2 Score=38.84 Aligned_cols=94 Identities=18% Similarity=0.115 Sum_probs=65.7
Q ss_pred ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhh----------------h---
Q 032655 38 DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVM----------------L--- 98 (136)
Q Consensus 38 ~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~----------------~--- 98 (136)
.+.....+...+...|+++-|.+++.=. +.++...|++|+|++++|++++|.+...+ .
T Consensus 809 ~~~~~~~l~~~L~~~~~~~~a~eL~~~~---~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ 885 (950)
T 4gq2_M 809 ENDLVTELVEKLFLFKQYNACMQLIGWL---NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQE 885 (950)
T ss_dssp SCCHHHHHHHHHHHTTCHHHHHHHGGGC---CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHH
T ss_pred CCccHHHHHHHHHHhcHHHHHHHHHhhc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhh
Confidence 3444445666667788888877766543 46677789999999999999999753211 0
Q ss_pred -hc--c-cchHhHHHHH-HHHHHHHcCChHHHHHHHHHhhcc
Q 032655 99 -RL--L-KMISSAICFL-RGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 99 -~~--~-~~~~a~i~~l-~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
++ + ....+. ||+ .-.+++..+-++-++++-+.||..
T Consensus 886 ll~~~e~~~~~~~-YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 886 IAEKYHHQNLLSC-YYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HHHHTTTCSHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccCcccccchhHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 11 1 112222 554 499999999999999999999864
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.52 E-value=0.2 Score=33.44 Aligned_cols=53 Identities=11% Similarity=0.140 Sum_probs=37.0
Q ss_pred HHHHHHHHhccC-C--ChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHH
Q 032655 25 AIFFANEVAALT-N--DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYL 77 (136)
Q Consensus 25 Alf~aekl~~~~-~--~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l 77 (136)
++..-+.++... | ..+-+|++|..+|+.|+|.+|..+++...- .|.+..+.-|
T Consensus 57 GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 57 GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 666666666655 4 334599999999999999999998877431 3344444433
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.42 E-value=2 Score=30.19 Aligned_cols=52 Identities=10% Similarity=-0.086 Sum_probs=39.0
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCc
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSK 66 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~ 66 (136)
....-+++.|+++.|.-.|+.+ .++.-|-.+|..-...|+++-|..++++.+
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3456677889999998888776 456678888888888888887777776643
No 232
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.15 E-value=1.8 Score=35.47 Aligned_cols=49 Identities=4% Similarity=-0.038 Sum_probs=38.9
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~ 65 (136)
...++..++++.|.-.+..+ +++..|-.+|......|+++.|..++.+.
T Consensus 659 f~~~l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eehhhhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45567889999998876432 46778889999999999999998888764
No 233
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.81 E-value=0.51 Score=38.70 Aligned_cols=120 Identities=8% Similarity=-0.042 Sum_probs=51.9
Q ss_pred HHHHcCChhhHHHHHHHHhc---cC--------C-ChHHHHHHHHHHhccCChHHH--------------HHHHhcCcc-
Q 032655 15 DCVSKHLYSSAIFFANEVAA---LT--------N-DPADVYMQAQALFLGRHYRRP--------------FHLLNSSKI- 67 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~---~~--------~-~~~~~~~la~~l~~~g~~~~A--------------~~~l~~~~l- 67 (136)
+-+++.+|+.|..+++.+.. +. + +..-||+++.++-+.|..... +..++.+.+
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 45678899999999987762 11 1 233477777777777765431 123344433
Q ss_pred --cccCcchHHHHHHHHHHccChhhhhhhhhhh-hc----ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 68 --VLRDLRFRYLAAKCLEELRSGTSVCRCSVML-RL----LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 68 --~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~-~~----~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
...-....+++-+.|...+.|++|..-..+. +. .++.-..-+|..|+++.-++++.+|.+++..|++
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1123357889999999999999997643321 11 1223344566889999999999999999999986
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.68 E-value=0.81 Score=36.36 Aligned_cols=93 Identities=6% Similarity=-0.152 Sum_probs=69.2
Q ss_pred HHHHHHHHhccCChHHHHHHHhcCcc-----cc--cCcchHHHHHHHHHHccChhhhhhhhhh----hhc--ccc-hHhH
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSSKI-----VL--RDLRFRYLAAKCLEELRSGTSVCRCSVM----LRL--LKM-ISSA 107 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~~l-----~~--~~~~~~~l~a~c~~~l~~~~ea~~~~~~----~~~--~~~-~~a~ 107 (136)
...||..+...|+|.+|..++..... .. .-.++.....+.|.+.++|..|...+.. .++ ..| ....
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 46789999999999999998876322 11 1236788899999999999998643322 222 222 3445
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 108 ICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 108 i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.+...|+++..-+++.+|..+|.++++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 556889999999999999999998864
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.63 E-value=0.39 Score=32.83 Aligned_cols=54 Identities=4% Similarity=-0.029 Sum_probs=38.6
Q ss_pred hhHHHHHHHHhccCC-C-hHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHH
Q 032655 23 SSAIFFANEVAALTN-D-PADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRY 76 (136)
Q Consensus 23 ~~Alf~aekl~~~~~-~-~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~ 76 (136)
..++...+.++..+| . .+-+|++|..+|+.|+|.+|..+++...- .|.+..+.-
T Consensus 59 ~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 59 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 356667777777667 3 44699999999999999999998877431 334444433
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.60 E-value=2.6 Score=29.08 Aligned_cols=117 Identities=12% Similarity=0.068 Sum_probs=66.5
Q ss_pred HHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHH--HHHHHHHccChhhh
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYL--AAKCLEELRSGTSV 91 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l--~a~c~~~l~~~~ea 91 (136)
..+..|..+..+-.-++...-+| +.-+|+.=- ....-+.+-..+.|++.+-...-..|-++ .-.|+.+.+.+.|-
T Consensus 16 ~~ildG~v~qGveii~k~~~ssni~E~NW~ICN--iiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~ 93 (172)
T 1wy6_A 16 KFLLDGYIDEGVKIVLEITKSSTKSEYNWFICN--LLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEH 93 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHH--HHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHH
T ss_pred HHHHhhhHHHHHHHHHHHcCCCCccccceeeee--cchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHH
Confidence 34555888999888888887777 433444321 12222333334444443221111122222 23466666666663
Q ss_pred ----hhhhh------------hh-hcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 92 ----CRCSV------------ML-RLLKMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 92 ----~~~~~------------~~-~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
++... .. +...++.+++.+-+|.+|.+.|+..+|-+-.++|=
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 22211 01 11334567888888999999999999999988874
No 237
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=90.16 E-value=2.9 Score=33.02 Aligned_cols=109 Identities=10% Similarity=0.110 Sum_probs=59.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCCChHHH-HHHHHHHhcc----CChHHHHHHHhcCcccccCcchHHHHHHHHH
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTNDPADV-YMQAQALFLG----RHYRRPFHLLNSSKIVLRDLRFRYLAAKCLE 83 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~-~~la~~l~~~----g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~ 83 (136)
+...|+.|++.++|.+|+..| ..++++-+ -.--+.|+.. ..+-+.+..+-...+ .++. +..
T Consensus 159 ~e~AV~~cl~~~r~adAllLA-----~~gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~----~d~V-----~~~ 224 (399)
T 2pm7_A 159 IKSAVKNSLENDLMMEAMVIA-----LDSNNERLKESVKNAYFAKYGSKSSLSRILYSISKREV----DDLV-----ENL 224 (399)
T ss_dssp HHHHHHHHHTTTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCC----HHHH-----HHB
T ss_pred HHHHHHHHHHCCChHHHHHHH-----HhcCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCH----HHHH-----hcC
Confidence 455667777777777776554 45565555 3333334422 234455554433222 0110 112
Q ss_pred HccChhhhhhhhhhhhcccc--hHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 84 ELRSGTSVCRCSVMLRLLKM--ISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 84 ~l~~~~ea~~~~~~~~~~~~--~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
.+++|+|++...--+- ..+ ....+|-.+|.-++..|+++.|.-||.-|
T Consensus 225 ~l~~WkE~La~i~t~a-~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~A 274 (399)
T 2pm7_A 225 DVSQWKFISKAIQNLY-PNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAA 274 (399)
T ss_dssp CGGGHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhcC-CccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhh
Confidence 5667777654222111 122 45667778888888888999998888765
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.89 E-value=0.32 Score=32.89 Aligned_cols=56 Identities=5% Similarity=-0.017 Sum_probs=40.0
Q ss_pred hhhHHHHHHHHhccCC-C-hHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHH
Q 032655 22 YSSAIFFANEVAALTN-D-PADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYL 77 (136)
Q Consensus 22 ~~~Alf~aekl~~~~~-~-~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l 77 (136)
...++..-+.++..+| . .+-+|++|..+|+.|+|.+|..+++... ..|.+..+.-|
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3467777777777777 3 4469999999999999999999887643 13344444333
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.49 E-value=1.2 Score=35.17 Aligned_cols=91 Identities=11% Similarity=-0.043 Sum_probs=64.9
Q ss_pred HHHHHHhccCChHHHHHHHhcCcc-----c--ccCcchHHHHHHHHHHccChhhhhhhhhh---hhc----ccchHhHHH
Q 032655 44 MQAQALFLGRHYRRPFHLLNSSKI-----V--LRDLRFRYLAAKCLEELRSGTSVCRCSVM---LRL----LKMISSAIC 109 (136)
Q Consensus 44 ~la~~l~~~g~~~~A~~~l~~~~l-----~--~~~~~~~~l~a~c~~~l~~~~ea~~~~~~---~~~----~~~~~a~i~ 109 (136)
.+|..|+..|+|.+|+.++++..- + ..-.++..+-.+.+..+|++..+-..... ..+ +....+.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 478999999999999888765321 1 12335677778888899998887542211 111 222466666
Q ss_pred HHHHHHHH-HcCChHHHHHHHHHhhc
Q 032655 110 FLRGKAYE-ALGNCAQARLWLVSCDE 134 (136)
Q Consensus 110 ~l~G~~~~-~~~~~~~A~~~y~~AL~ 134 (136)
..-|..+. ..++++.|...|-+|++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 67799999 89999999999988863
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.84 E-value=2.4 Score=37.53 Aligned_cols=92 Identities=17% Similarity=0.104 Sum_probs=60.6
Q ss_pred HHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhhh-------------------hc-
Q 032655 41 DVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVML-------------------RL- 100 (136)
Q Consensus 41 ~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~-------------------~~- 100 (136)
-...+...+...|++.-+..++.= .+.++...|+.|+|++..|++++|.+..... +.
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~---~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGW---LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHH---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhh---ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 345667778888888877776543 2456777899999999999999986532110 00
Q ss_pred --ccchHhHHHHHH-HHHHHHcCChHHHHHHHHHhhcc
Q 032655 101 --LKMISSAICFLR-GKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 101 --~~~~~a~i~~l~-G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
.....-+-+|+. -.++++.+.++-++++-+.|++.
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~ 928 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 928 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 001112234544 67888889999998888888753
No 241
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=88.33 E-value=0.75 Score=35.11 Aligned_cols=48 Identities=15% Similarity=0.016 Sum_probs=42.9
Q ss_pred CChhhHHHHHHHHhccCC--ChHHHHHHHHHHhcc-CChHHHHHHHhcCcc
Q 032655 20 HLYSSAIFFANEVAALTN--DPADVYMQAQALFLG-RHYRRPFHLLNSSKI 67 (136)
Q Consensus 20 ~~~~~Alf~aekl~~~~~--~~~~~~~la~~l~~~-g~~~~A~~~l~~~~l 67 (136)
|+.+.|....+|+++++| +++..+.+|.-+... |++..|..+|++..-
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 899999999999999999 388999999999885 999999999977543
No 242
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.00 E-value=5.2 Score=25.85 Aligned_cols=88 Identities=16% Similarity=0.125 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHH-HHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHH
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVY-MQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKC 81 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~-~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c 81 (136)
.++...|-++.--.--+|..++|.-.||=+-.... .+-|- .-...+...|+|.+|+.+.+..- .|+.--++|.|
T Consensus 3 ~~l~~lLAE~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc 77 (115)
T 2uwj_G 3 TSLIRELAELALAGSGQHCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC 77 (115)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH
Confidence 34555666666666678999999999997766544 44333 33678999999999999887743 67777789999
Q ss_pred HHHccChhhhhhhh
Q 032655 82 LEELRSGTSVCRCS 95 (136)
Q Consensus 82 ~~~l~~~~ea~~~~ 95 (136)
-.++|-..+++...
T Consensus 78 e~rlGl~s~le~rL 91 (115)
T 2uwj_G 78 EWHLGLGAALDRRL 91 (115)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHhcccHHHHHHHH
Confidence 99999999987654
No 243
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.79 E-value=5.4 Score=25.82 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHHH-HHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHH
Q 032655 4 EEIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADVY-MQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCL 82 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~~-~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~ 82 (136)
++...|-++.--.--+|..++|.-.||=+-.... .+-|- .-...+...|+|.+|+.+.+..- .|+.--++|.|-
T Consensus 5 ~l~~lLAE~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce 79 (116)
T 2p58_C 5 KLNVLLAEIALIGTGNHYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE 79 (116)
T ss_dssp CHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH
Confidence 3444555555556678999999999997766544 44333 33678999999999999998753 677777899999
Q ss_pred HHccChhhhhhhh
Q 032655 83 EELRSGTSVCRCS 95 (136)
Q Consensus 83 ~~l~~~~ea~~~~ 95 (136)
.++|-..+++...
T Consensus 80 ~rlGl~s~le~rL 92 (116)
T 2p58_C 80 YRLGLGSALESRL 92 (116)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HhcccHHHHHHHH
Confidence 9999999987654
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.79 E-value=11 Score=33.45 Aligned_cols=115 Identities=19% Similarity=0.179 Sum_probs=71.1
Q ss_pred HHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcc-ccc------------------
Q 032655 11 GLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLR------------------ 70 (136)
Q Consensus 11 ~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~------------------ 70 (136)
.++..++..++++-|. .+....| +|-..|.+|.|+...|++++|..+++++.. ...
T Consensus 817 ~l~~~l~~~~~~~~~~----~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHH----HHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHH----HHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 4556667777776543 3555666 777889999999999999999999977532 100
Q ss_pred ----CcchHHHHHHHHH-HccChhhhhhhhhhhh--c--c-cchHhHHHHHHHHHHHHcCChHHHHHHH
Q 032655 71 ----DLRFRYLAAKCLE-ELRSGTSVCRCSVMLR--L--L-KMISSAICFLRGKAYEALGNCAQARLWL 129 (136)
Q Consensus 71 ----~~~~~~l~a~c~~-~l~~~~ea~~~~~~~~--~--~-~~~~a~i~~l~G~~~~~~~~~~~A~~~y 129 (136)
....+|+..-.++ +.|-++.+++-....+ . + .+....++..+=+.+-.+|++++|-...
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 0112444444444 4455555554222111 1 1 1223446666677788899999987665
No 245
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=85.52 E-value=4.4 Score=29.02 Aligned_cols=71 Identities=18% Similarity=0.173 Sum_probs=52.7
Q ss_pred cCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc--ccc----------------Cc-chHHHHH
Q 032655 19 KHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLR----------------DL-RFRYLAA 79 (136)
Q Consensus 19 ~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~----------------~~-~~~~l~a 79 (136)
+|-|..|+|.--++ ....++|+.+.||....+|+.|+..+++.-- ... +. -+..++|
T Consensus 46 ngEY~R~Lf~L~~l----NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a 121 (242)
T 3kae_A 46 NGEYTRALFHLHKL----NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG 121 (242)
T ss_dssp TTCHHHHHHHHHTC----CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH
T ss_pred cchHhHHHHHHHhc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH
Confidence 47777787753322 2456899999999999999999998876321 111 11 2567899
Q ss_pred HHHHHccChhhhhh
Q 032655 80 KCLEELRSGTSVCR 93 (136)
Q Consensus 80 ~c~~~l~~~~ea~~ 93 (136)
..|..+|.-+||+.
T Consensus 122 ~lltq~g~r~EaI~ 135 (242)
T 3kae_A 122 DLCTLSGYREEGIG 135 (242)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHhcCHHHhhh
Confidence 99999999999974
No 246
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.51 E-value=1.5 Score=34.59 Aligned_cols=94 Identities=11% Similarity=-0.179 Sum_probs=66.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHhcCcc----cccCcchHHHHHHHHHHccChhhhhhhhhhh---hc--ccc-hHhHHHH
Q 032655 41 DVYMQAQALFLGRHYRRPFHLLNSSKI----VLRDLRFRYLAAKCLEELRSGTSVCRCSVML---RL--LKM-ISSAICF 110 (136)
Q Consensus 41 ~~~~la~~l~~~g~~~~A~~~l~~~~l----~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~---~~--~~~-~~a~i~~ 110 (136)
....+|.-++..|++..|.+.+.+..- ...-..+.....++++..++|..+....... .+ +.+ ....+-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 466799999999999999998866331 1234467788888999999999986543221 11 122 2333444
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhc
Q 032655 111 LRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 111 l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
..|.++...+++..|...|.+++.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 669999999999999999988753
No 247
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.94 E-value=5 Score=31.04 Aligned_cols=60 Identities=10% Similarity=-0.153 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 73 RFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 73 ~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
.+..-.+..+..+|++.+++......+...|....++..+=.++.+.|++.+|...|.++
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555666677777777765443322223333445555556667777777777777664
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.26 E-value=7.6 Score=33.19 Aligned_cols=110 Identities=11% Similarity=-0.058 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHhccCCChHHHHHHHHH--Hh-ccCChHHHHHHHhcCc---------c----------cccCcchHHHHH
Q 032655 22 YSSAIFFANEVAALTNDPADVYMQAQA--LF-LGRHYRRPFHLLNSSK---------I----------VLRDLRFRYLAA 79 (136)
Q Consensus 22 ~~~Alf~aekl~~~~~~~~~~~~la~~--l~-~~g~~~~A~~~l~~~~---------l----------~~~~~~~~~l~a 79 (136)
++-|+-..+++....|.....+..+.. +. ...+=-+|+.++...- + .+.......+.+
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 577888889988887744433322222 11 2222234555543221 0 001123456667
Q ss_pred HHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHH
Q 032655 80 KCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVS 131 (136)
Q Consensus 80 ~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~ 131 (136)
+=|...|+|+-|+..+...+.-.|.+=.-|+.+.++|-.+|+++.|.-..-.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 7778889999988776655544555666788999999999999999876543
No 249
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=82.45 E-value=1.9 Score=26.45 Aligned_cols=27 Identities=15% Similarity=0.033 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...+|.-..+.|++++|+.+|++|++.
T Consensus 22 lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 22 YAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 346699999999999999999999864
No 250
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.05 E-value=12 Score=27.96 Aligned_cols=121 Identities=11% Similarity=-0.034 Sum_probs=76.1
Q ss_pred HHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc-ccccCcchHHHHHHHHHHccChhh
Q 032655 13 VRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK-IVLRDLRFRYLAAKCLEELRSGTS 90 (136)
Q Consensus 13 i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~-l~~~~~~~~~l~a~c~~~l~~~~e 90 (136)
+...+..++.++|+-....-+--+| +.+--..+.+.|...|+|+||..=|+... +++......-++ +-+.....+.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y-r~lI~aE~~R~ 82 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL-RHLVKAAQARK 82 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH-HHHHHHHHHHH
Confidence 3456778999999999999999999 88888999999999999999998776543 222221111111 22222222222
Q ss_pred hhhhh--hhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 91 VCRCS--VMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 91 a~~~~--~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
..=.. ...+-+-|..-...++........|+.++|.+.=.+|++
T Consensus 83 ~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 83 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 11000 000112233334445668888899999999988877765
No 251
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=80.68 E-value=2.2 Score=26.32 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=22.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...++.-....|++++|..+|+.|++.
T Consensus 19 lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 19 VLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 335588889999999999999999864
No 252
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=79.72 E-value=2.6 Score=25.66 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+..++.-..+.|++++|+.+|++|++.
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 335688899999999999999999864
No 253
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=79.01 E-value=1.7 Score=36.33 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=50.3
Q ss_pred HHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhhh
Q 032655 30 NEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 30 ekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
.|.+++-+..+.+...|+-.+..|+|.-|.++++..-. ++.+...+.+.|.++.++|.-.|..
T Consensus 440 ~~~v~~~gg~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~~ 503 (658)
T 2cfu_A 440 GRYVEYMGGAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAENA 503 (658)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSSH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccCh
Confidence 33344444456688899999999999999999987544 6688899999999999999888753
No 254
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.03 E-value=5.9 Score=34.48 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=40.8
Q ss_pred HHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCc
Q 032655 12 LVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSK 66 (136)
Q Consensus 12 ~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~ 66 (136)
++..++..+.++ ++..+....| +|-..|.+|.|+...|++++|..+++++.
T Consensus 816 l~~~L~~~~~~~----~a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYN----ACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHH----HHHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHH----HHHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 556666677765 3556777777 77789999999999999999999997754
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=73.18 E-value=15 Score=30.52 Aligned_cols=78 Identities=9% Similarity=0.028 Sum_probs=47.8
Q ss_pred HHHHcCChhhHHHHHHHHhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccc-cCcchHHHHHHHHHHccChhhhh
Q 032655 15 DCVSKHLYSSAIFFANEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVL-RDLRFRYLAAKCLEELRSGTSVC 92 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~-~~~~~~~l~a~c~~~l~~~~ea~ 92 (136)
..+..+.-.+|..|.++.....++.+..-+.+-.-.+.|++..|...++...-.. ......|=.|+.+.++|+-++|.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~ 339 (618)
T 1qsa_A 261 RLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK 339 (618)
T ss_dssp TSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHH
Confidence 3334443556777777755444444433333333345688888888887654322 34556788888888888888874
No 256
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=72.69 E-value=5.3 Score=24.19 Aligned_cols=27 Identities=4% Similarity=-0.022 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...++.-....|++++|+.+|+.|+++
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345688889999999999999999864
No 257
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=72.63 E-value=5.2 Score=24.86 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=23.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...++.-....|++++|+.+|+.|++.
T Consensus 18 lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 18 VLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 446689999999999999999999864
No 258
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=72.41 E-value=17 Score=32.55 Aligned_cols=87 Identities=10% Similarity=0.020 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhc-----cCCChHHHHHHHHHHhccCChHHHHHHHhcCcc--cccCcchHHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAA-----LTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI--VLRDLRFRYL 77 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~-----~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l--~~~~~~~~~l 77 (136)
....+..+|.-+-..|+.+.|.-+.+..-. ..|+.-..-.+...|.+.|+.++|..+++.-.. ...+.-.+..
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 344678899999999999999999876543 346777777888889999999999999866422 2345556666
Q ss_pred HHHHHHHccCh-hhh
Q 032655 78 AAKCLEELRSG-TSV 91 (136)
Q Consensus 78 ~a~c~~~l~~~-~ea 91 (136)
+=.|+.+.|+. ++|
T Consensus 206 LI~glcK~G~~~e~A 220 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTI 220 (1134)
T ss_dssp HHHHHHHHTCCHHHH
T ss_pred HHHHHHhCCCcHHHH
Confidence 77788888885 455
No 259
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.33 E-value=29 Score=26.27 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 032655 107 AICFLRGKAYEALGNCAQARLWLV 130 (136)
Q Consensus 107 ~i~~l~G~~~~~~~~~~~A~~~y~ 130 (136)
.++.++|..|.+-|++.+|..+|.
T Consensus 135 ~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 135 YLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHH
Confidence 456688999999999999988875
No 260
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=69.48 E-value=5.5 Score=30.64 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPA 40 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~ 40 (136)
+--||..+-.+....+|.+|..+|+|++.+.|+++
T Consensus 207 ~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 241 (325)
T 3mv2_A 207 TNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP 241 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 34588999999999999999999999999999644
No 261
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=68.61 E-value=3.3 Score=26.15 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=20.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 111 LRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 111 l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
-+...+-+.|++++|++|.++|..+
T Consensus 20 RrAe~ll~~gkydeAIech~kAa~y 44 (97)
T 2crb_A 20 RRADRLLAAGKYEEAISCHRKATTY 44 (97)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6688889999999999998887643
No 262
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=69.75 E-value=1.2 Score=37.46 Aligned_cols=60 Identities=22% Similarity=0.127 Sum_probs=48.9
Q ss_pred HhccCCChHHHHHHHHHHhccCChHHHHHHHhcCcc-cccCcchHHHHHHHHHHccChhhh
Q 032655 32 VAALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKI-VLRDLRFRYLAAKCLEELRSGTSV 91 (136)
Q Consensus 32 l~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l-~~~~~~~~~l~a~c~~~l~~~~ea 91 (136)
.+++-+..+.+.-.|+-.+..|+|.-|.++++..-. ++.+...+.+.|.++.++|.-.|.
T Consensus 454 ~v~~~Gg~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 454 YVEAMGGADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 333333456688889999999999999999987544 678899999999999999988885
No 263
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=65.58 E-value=5 Score=25.01 Aligned_cols=30 Identities=17% Similarity=0.039 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHHHHc---CChHHHHHHHHHhhc
Q 032655 105 SSAICFLRGKAYEAL---GNCAQARLWLVSCDE 134 (136)
Q Consensus 105 ~a~i~~l~G~~~~~~---~~~~~A~~~y~~AL~ 134 (136)
.+-.+..+|...... |+.++|+++|++.+.
T Consensus 15 ~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~ 47 (89)
T 3eab_A 15 QAFEYISIALRIDEDEKAGQKEQAVEWYKKGIE 47 (89)
T ss_dssp HHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHH
Confidence 445566889999888 999999999998764
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=65.29 E-value=17 Score=28.54 Aligned_cols=58 Identities=21% Similarity=0.060 Sum_probs=44.2
Q ss_pred HHHHHHHHccChhhhhhhhh---h---hhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 77 LAAKCLEELRSGTSVCRCSV---M---LRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 77 l~a~c~~~l~~~~ea~~~~~---~---~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
-+|.-+++.|+|.+|..... . ..|+....-.++.+--++|-.++|..++...|.+|..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 46888999999999965322 1 2333344555677889999999999999999999865
No 265
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=65.21 E-value=6.9 Score=30.03 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChH
Q 032655 6 IEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPA 40 (136)
Q Consensus 6 ~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~ 40 (136)
+--||..+-.+....+|.+|..+|.|++.+.|+++
T Consensus 198 ~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~ 232 (320)
T 3mkr_B 198 ILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE 232 (320)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence 34588899999999999999999999999988755
No 266
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.86 E-value=8.9 Score=25.05 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 105 SSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 105 ~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.|-.+..+|.-....|+.+.|+++|++.+.
T Consensus 21 ~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 21 KAFLFVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 455566889999999999999999998764
No 267
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=64.81 E-value=31 Score=23.73 Aligned_cols=86 Identities=17% Similarity=0.096 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhhhhhhhcccchHhHHHHHHHHHHHHc
Q 032655 40 ADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRCSVMLRLLKMISSAICFLRGKAYEAL 119 (136)
Q Consensus 40 ~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~~~~~~~~~~a~i~~l~G~~~~~~ 119 (136)
...+.-|.-.|...+|..++.-|++.....-.....|.+|.++.+.....+--....+ ..+...+.=.+++=-||-..
T Consensus 9 q~a~i~a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIl--n~itlkSde~yL~YWIyiGR 86 (161)
T 2ynq_A 9 QEAYIQSTELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQRQTVS--NNITLKTDEQYMLYWIYIGR 86 (161)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHH--HTCCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHHHHHH--hhCCccCCHHHHHHHHHHcC
Confidence 4677788899999999999999999876555667899999999999877643222211 11112222224444445555
Q ss_pred CChHHHHH
Q 032655 120 GNCAQARL 127 (136)
Q Consensus 120 ~~~~~A~~ 127 (136)
|++++|+.
T Consensus 87 g~~~eAlD 94 (161)
T 2ynq_A 87 SQSEEALE 94 (161)
T ss_dssp TCHHHHHH
T ss_pred CchHHHHH
Confidence 66666654
No 268
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=64.16 E-value=8.1 Score=25.09 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=21.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 110 FLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 110 ~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
..++.-....|++++|+.+|+.|+++
T Consensus 22 v~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 22 ASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35588888999999999999999864
No 269
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=62.25 E-value=20 Score=20.50 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhccCCChHHH-HHHHHHHhccCChHHHH
Q 032655 5 EIEKLRGLVRDCVSKHLYSSAIFFANEVAALTNDPADV-YMQAQALFLGRHYRRPF 59 (136)
Q Consensus 5 ~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~~~~~~-~~la~~l~~~g~~~~A~ 59 (136)
+-..|-.+.--.--+|..++|.-.||=+-......+-| .....++...|.|++|+
T Consensus 5 l~~lLAe~AL~~TG~HcH~EA~tIA~~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 5 LKKQLAELALAGTGHHCHQEAASIADWLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 33334444444444555666666655544433333322 22344555555555553
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=59.94 E-value=73 Score=26.35 Aligned_cols=113 Identities=8% Similarity=-0.067 Sum_probs=63.0
Q ss_pred ChhhHHHHHHHHhccCC-ChHH----HHHHHHHHhccCChHHHHHHHhcCcccccCc-chHHHHHHHHHHccChhhhhhh
Q 032655 21 LYSSAIFFANEVAALTN-DPAD----VYMQAQALFLGRHYRRPFHLLNSSKIVLRDL-RFRYLAAKCLEELRSGTSVCRC 94 (136)
Q Consensus 21 ~~~~Alf~aekl~~~~~-~~~~----~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~-~~~~l~a~c~~~l~~~~ea~~~ 94 (136)
+.+.|.-...+...-.+ +++. .-.+|.-++..+.-.++...+.+......+. ..-...+. .+..|+++++...
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~-Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRM-ALGTGDRRGLNTW 307 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHHTCHHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHH-HHHCCCHHHHHHH
Confidence 66777666655543222 3332 2234555666662233333333321111111 12233344 4567999998764
Q ss_pred hhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 95 SVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 95 ~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
....-+.....+...|=+|+.++++|+.++|...|+++..
T Consensus 308 ~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 308 LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4321112223455678999999999999999999998754
No 271
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=59.94 E-value=26 Score=31.37 Aligned_cols=90 Identities=8% Similarity=-0.124 Sum_probs=60.4
Q ss_pred HHHHHHHHhccCChHHHHHHHhcCc-----ccccCcchHHHHHHHHHHccChhhhhhhhh-hhhcccchHhHHHH-HHHH
Q 032655 42 VYMQAQALFLGRHYRRPFHLLNSSK-----IVLRDLRFRYLAAKCLEELRSGTSVCRCSV-MLRLLKMISSAICF-LRGK 114 (136)
Q Consensus 42 ~~~la~~l~~~g~~~~A~~~l~~~~-----l~~~~~~~~~l~a~c~~~l~~~~ea~~~~~-~~~~~~~~~a~i~~-l~G~ 114 (136)
.--+-.+|.+.|+.++|..+++... ....+...++.+-..+.+.|+.++|.+-.. +...+..+..-.|. ++.
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~- 208 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ- 208 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH-
Confidence 4456778999999999999985421 123566788999999999999999987544 33334322222222 333
Q ss_pred HHHHcCCh-HHHHHHHHHh
Q 032655 115 AYEALGNC-AQARLWLVSC 132 (136)
Q Consensus 115 ~~~~~~~~-~~A~~~y~~A 132 (136)
++.+.|+. ++|.+.|.+-
T Consensus 209 glcK~G~~~e~A~~Ll~EM 227 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQM 227 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHH
Confidence 45566774 6787887764
No 272
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=58.90 E-value=24 Score=28.17 Aligned_cols=58 Identities=10% Similarity=-0.085 Sum_probs=42.1
Q ss_pred HHHHHHHccChhhhhhhh------hh--hhcccc--hHhHHHHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 78 AAKCLEELRSGTSVCRCS------VM--LRLLKM--ISSAICFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 78 ~a~c~~~l~~~~ea~~~~------~~--~~~~~~--~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
+=++|+++++..-|-... .. .++..| ....-.|.+|+++.-.+++.+|-+++..|++.
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 348899999998885421 11 222222 34455779999999999999999999999863
No 273
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=58.34 E-value=63 Score=25.49 Aligned_cols=53 Identities=6% Similarity=-0.014 Sum_probs=40.1
Q ss_pred hHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHH
Q 032655 24 SAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRY 76 (136)
Q Consensus 24 ~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~ 76 (136)
...+..++++...| .++-|+.++.-+...|+.++|..+++++--.|.+...++
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~ 250 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL 250 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH
Confidence 35678899998889 777899999999999999999998866532233333333
No 274
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.74 E-value=18 Score=29.65 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHhccCC-C----h---HHHHHHHHHHhccCChHHHHHHHhc
Q 032655 9 LRGLVRDCVSKHLYSSAIFFANEVAALTN-D----P---ADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 9 lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~----~---~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
+-.+++.|+..+.|+.|.-+-.|.- +| + . .-.|++|.++...++|.+|.+.+..
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4468899999999999999999874 44 1 1 1378889999999999999887754
No 275
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=57.08 E-value=11 Score=22.76 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 110 FLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 110 ~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
..+|+=|--+||++.|+.+|..++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 3569999999999999999999875
No 276
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=56.84 E-value=71 Score=25.20 Aligned_cols=22 Identities=5% Similarity=-0.142 Sum_probs=17.2
Q ss_pred HHHHcCChhhHHHHHHHHhccCC
Q 032655 15 DCVSKHLYSSAIFFANEVAALTN 37 (136)
Q Consensus 15 ~~l~~~~~~~Alf~aekl~~~~~ 37 (136)
....+++.+.|.-..++++.. |
T Consensus 222 ~~~~~~~~~~ar~i~erAi~~-P 243 (493)
T 2uy1_A 222 YLIGIGQKEKAKKVVERGIEM-S 243 (493)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-C
T ss_pred HHHHcCCHHHHHHHHHHHHhC-C
Confidence 345567888888888888888 7
No 277
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=56.66 E-value=47 Score=23.07 Aligned_cols=54 Identities=7% Similarity=-0.143 Sum_probs=40.8
Q ss_pred ccCCChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhhh
Q 032655 34 ALTNDPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCRC 94 (136)
Q Consensus 34 ~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~~ 94 (136)
.++.+|+.-|-+|. ..|+++.|+++.+.. .+..++--+|......|+++=|+.+
T Consensus 3 ~~~~D~~~rF~LAL---~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~c 56 (177)
T 3mkq_B 3 QFVQDPHIRFDLAL---EYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMI 56 (177)
T ss_dssp TTSSCHHHHHHHHH---HTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccCChHHHHHHHH---hcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHH
Confidence 44557777787774 569999999988753 4567888888888888888877643
No 278
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=56.53 E-value=65 Score=24.70 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q 032655 107 AICFLRGKAYEALGNCAQARLWLV 130 (136)
Q Consensus 107 ~i~~l~G~~~~~~~~~~~A~~~y~ 130 (136)
.++.++|..|.+-+++.+|..+|.
T Consensus 137 ~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 137 ELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCHHHHHHHHH
Confidence 456678888888888888887763
No 279
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=52.77 E-value=53 Score=22.57 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=57.4
Q ss_pred cCC-ChHHHHHHHHHHhccCCh------HHHHHHHhcCcc-cc---cCc-----chHHHHHHHHHHccChhhhhhhhhhh
Q 032655 35 LTN-DPADVYMQAQALFLGRHY------RRPFHLLNSSKI-VL---RDL-----RFRYLAAKCLEELRSGTSVCRCSVML 98 (136)
Q Consensus 35 ~~~-~~~~~~~la~~l~~~g~~------~~A~~~l~~~~l-~~---~~~-----~~~~l~a~c~~~l~~~~ea~~~~~~~ 98 (136)
++| +|++|+.+..-+=.+|++ ++.....+++-. .+ ... ..+.-+| .+..+++.++|-+....-
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA-~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFA-ELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHH-HHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHH-HHHHhcCHHHHHHHHHHH
Confidence 567 888888888888877888 665555543211 11 111 1111122 224445555554432211
Q ss_pred hc-ccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 99 RL-LKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 99 ~~-~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
++ .-.+ +-++..-++---++||..+|..-+.+|+.
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 11 2233 77888889988999999999999888874
No 280
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=52.07 E-value=33 Score=20.98 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHhccC---C-ChHHHHHH
Q 032655 1 MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAALT---N-DPADVYMQ 45 (136)
Q Consensus 1 ~~~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~~---~-~~~~~~~l 45 (136)
||+++-++.+.++..++..+.= .++.-|++.-..- . +||++..+
T Consensus 3 ~m~~~~~~Y~~iL~~yl~~~~E-~~Ly~~q~fs~~~iek~i~PEeiV~i 50 (84)
T 1w53_A 3 FREVIEQRYHQLLSRYIAELTE-TSLYQAQKFSRKTIEHQIPPEEIISI 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccH-HHHHHHHHhhHHHHHcCCCHHHHHHH
Confidence 4688889999999999996655 9999998866443 3 78876544
No 281
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=50.34 E-value=9 Score=19.64 Aligned_cols=14 Identities=7% Similarity=-0.204 Sum_probs=11.9
Q ss_pred hHHHHHHHHHhhcc
Q 032655 122 CAQARLWLVSCDEF 135 (136)
Q Consensus 122 ~~~A~~~y~~AL~~ 135 (136)
+++|+..|+.||+.
T Consensus 18 yDKAVaSfk~alk~ 31 (37)
T 3s6n_M 18 YDKAVASFKHALKN 31 (37)
T ss_pred HHHHHHHHHHHHhc
Confidence 67899999999874
No 282
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=46.94 E-value=21 Score=21.21 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=22.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 111 LRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 111 l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
-+|..+-..|+.++|+.+|-.||+.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~V 46 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAV 46 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5699999999999999999999864
No 283
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.40 E-value=18 Score=20.06 Aligned_cols=13 Identities=46% Similarity=0.746 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHH
Q 032655 2 REEEIEKLRGLVR 14 (136)
Q Consensus 2 ~~~~~~~lr~~i~ 14 (136)
||++++||++...
T Consensus 31 REElvdRLk~Y~~ 43 (58)
T 2do5_A 31 REELVERLQSYTR 43 (58)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 8999999998754
No 284
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=44.14 E-value=36 Score=19.57 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHhcc
Q 032655 3 EEEIEKLRGLVRDCVSKHLYSSAIFFANEVAAL 35 (136)
Q Consensus 3 ~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~~ 35 (136)
+++|..|+.....+....+|+.|..+=|++-++
T Consensus 23 ~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L 55 (63)
T 1e52_A 23 QQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQL 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 568899999999999999999999998888765
No 285
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.05 E-value=1.2e+02 Score=23.48 Aligned_cols=84 Identities=10% Similarity=-0.102 Sum_probs=62.1
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHhccCCC----hHHHHHHHHHHhccCChHHHHHHHhcCccc---ccCc----chHHHH
Q 032655 10 RGLVRDCVSKHLYSSAIFFANEVAALTND----PADVYMQAQALFLGRHYRRPFHLLNSSKIV---LRDL----RFRYLA 78 (136)
Q Consensus 10 r~~i~~~l~~~~~~~Alf~aekl~~~~~~----~~~~~~la~~l~~~g~~~~A~~~l~~~~l~---~~~~----~~~~l~ 78 (136)
..+-+++.+.|+++.|+-...++...+.+ .+-++....+....|+|..+...+++.... ..++ ....-.
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 46778889999999999999999877642 344666778888899999999888775421 1122 344556
Q ss_pred HHHHHHccChhhhhh
Q 032655 79 AKCLEELRSGTSVCR 93 (136)
Q Consensus 79 a~c~~~l~~~~ea~~ 93 (136)
|..+...++|.+|..
T Consensus 215 gl~~l~~r~f~~Aa~ 229 (429)
T 4b4t_R 215 GIHCLAVRNFKEAAK 229 (429)
T ss_dssp HHGGGGTSCHHHHHH
T ss_pred HHHHHHhChHHHHHH
Confidence 777788899999854
No 286
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=39.69 E-value=76 Score=25.51 Aligned_cols=62 Identities=10% Similarity=0.017 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHccCh---hhhhh----hhhhhhcccchHhHHHHHHHHHHHHcCChHHHHHHHHHhhc
Q 032655 73 RFRYLAAKCLEELRSG---TSVCR----CSVMLRLLKMISSAICFLRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 73 ~~~~l~a~c~~~l~~~---~ea~~----~~~~~~~~~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
.|.+..-+|+.-+|+. .+..+ ......+-.|.....+.-+|.+....|+.-.|+.+|.++|-
T Consensus 146 ~~~~~~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 146 SCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 3566667777666654 33332 22233334555555677889999999999999999999985
No 287
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.80 E-value=1.3e+02 Score=23.06 Aligned_cols=89 Identities=7% Similarity=-0.136 Sum_probs=57.5
Q ss_pred HHHHHhccCChHHHHHHHhcCc--c----------------cccCcchHHHHHHHHHHccChhhhhhhhh---hhh---c
Q 032655 45 QAQALFLGRHYRRPFHLLNSSK--I----------------VLRDLRFRYLAAKCLEELRSGTSVCRCSV---MLR---L 100 (136)
Q Consensus 45 la~~l~~~g~~~~A~~~l~~~~--l----------------~~~~~~~~~l~a~c~~~l~~~~ea~~~~~---~~~---~ 100 (136)
+..+.-...++.+|++.|++.. . ......+....++.+++.|+.++|..... ..+ +
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Confidence 3455666778888888875421 0 01122455668899999999999864322 112 1
Q ss_pred c--cchHhHHHHHHHHHHHHcCChHHHHHHHHHhh
Q 032655 101 L--KMISSAICFLRGKAYEALGNCAQARLWLVSCD 133 (136)
Q Consensus 101 ~--~~~~a~i~~l~G~~~~~~~~~~~A~~~y~~AL 133 (136)
+ ....+..+...|..|+..+++..+....-..|
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l 196 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYL 196 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2 23566677788999999999988766655544
No 288
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=36.68 E-value=1.1e+02 Score=21.65 Aligned_cols=34 Identities=15% Similarity=-0.025 Sum_probs=23.3
Q ss_pred ccchHhHHHHH-HHHHHHHcCChHHHHHHHHHhhc
Q 032655 101 LKMISSAICFL-RGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 101 ~~~~~a~i~~l-~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
++-..-+.+|. -+..++..|++++|.+.|+..++
T Consensus 109 ~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 109 GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE 143 (202)
T ss_dssp TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444555553 38888888888888888877654
No 289
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=35.63 E-value=60 Score=26.98 Aligned_cols=48 Identities=21% Similarity=0.106 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhccCC-ChHHHHHHHHHHhccCC
Q 032655 7 EKLRGLVRDCVSKHLYSSAIFFANEVAALTN-DPADVYMQAQALFLGRH 54 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~ 54 (136)
+.+....+.+.+.|.|.=|.-.+++++...| +.+...++|.+|-+.|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3455666777889999999999999999999 77788888887766653
No 290
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=34.52 E-value=1.5e+02 Score=22.35 Aligned_cols=63 Identities=19% Similarity=-0.043 Sum_probs=47.2
Q ss_pred cCcchHHHHHHHHHHccChhhhhhh-------hh---------hhhc---ccchHhHHHHHHHH-HHHHcCChHHHHHHH
Q 032655 70 RDLRFRYLAAKCLEELRSGTSVCRC-------SV---------MLRL---LKMISSAICFLRGK-AYEALGNCAQARLWL 129 (136)
Q Consensus 70 ~~~~~~~l~a~c~~~l~~~~ea~~~-------~~---------~~~~---~~~~~a~i~~l~G~-~~~~~~~~~~A~~~y 129 (136)
-+|..+.++|..+++-|++.+|... +. +... +.|.+..++..++. .|.-+||...|...|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~ 211 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESK 211 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4788999999999999999998531 11 1112 44667778888875 568999999999987
Q ss_pred HHh
Q 032655 130 VSC 132 (136)
Q Consensus 130 ~~A 132 (136)
..-
T Consensus 212 ~~f 214 (312)
T 2wpv_A 212 DIF 214 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 291
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=34.40 E-value=8.4 Score=28.64 Aligned_cols=27 Identities=11% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHhhcc
Q 032655 109 CFLRGKAYEALGNCAQARLWLVSCDEF 135 (136)
Q Consensus 109 ~~l~G~~~~~~~~~~~A~~~y~~AL~~ 135 (136)
...++.-+++.|++++|..+|++|+++
T Consensus 26 lv~~AVe~D~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 26 VLKRAVELDSESRYPQALVCYQEGIDL 52 (257)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345588899999999999999999875
No 292
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=29.34 E-value=2.1e+02 Score=22.63 Aligned_cols=27 Identities=15% Similarity=-0.012 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHh
Q 032655 106 SAICFLRGKAYEALGNCAQARLWLVSC 132 (136)
Q Consensus 106 a~i~~l~G~~~~~~~~~~~A~~~y~~A 132 (136)
...+.-+|......|+.+.|--||--|
T Consensus 278 ~~~l~~LGd~L~~~g~~~aAhiCYL~a 304 (441)
T 3mzk_B 278 LEFLIEFGIFLTKKGLTAAASTLFIIG 304 (441)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcchhHHhHhcc
Confidence 355668899999999999999999765
No 293
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=29.29 E-value=1.9e+02 Score=22.07 Aligned_cols=62 Identities=11% Similarity=-0.007 Sum_probs=45.6
Q ss_pred cCcchHHHHHHHHHHccChhhhhhh-------h-h--------hhhcccchHhHHHHHHHHH-HHHcCChHHHHHHHHH
Q 032655 70 RDLRFRYLAAKCLEELRSGTSVCRC-------S-V--------MLRLLKMISSAICFLRGKA-YEALGNCAQARLWLVS 131 (136)
Q Consensus 70 ~~~~~~~l~a~c~~~l~~~~ea~~~-------~-~--------~~~~~~~~~a~i~~l~G~~-~~~~~~~~~A~~~y~~ 131 (136)
-++....++|..+++-++|.+|... + . +....-|.+..++..++.+ |.-++|..-|..+|..
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVRAANTAYRI 212 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4778899999999999999999531 1 1 1111236677888888765 5899999999886644
No 294
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=27.97 E-value=51 Score=20.57 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=21.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHhhc
Q 032655 111 LRGKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 111 l~G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
-+|-.+-..|+.+.|+.+|-.||+
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~ 48 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIA 48 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 569999999999999998888875
No 295
>1a1w_A FADD protein; apoptosis, death effector domain; NMR {Homo sapiens} SCOP: a.77.1.4 PDB: 1a1z_A
Probab=27.59 E-value=64 Score=19.74 Aligned_cols=60 Identities=15% Similarity=0.100 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHcCCh---hhHHHHHHHHhccCC-ChHHHHHHHHHHhccCChHHHHHHHh
Q 032655 4 EEIEKLRGLVRDCVSKHLY---SSAIFFANEVAALTN-DPADVYMQAQALFLGRHYRRPFHLLN 63 (136)
Q Consensus 4 ~~~~~lr~~i~~~l~~~~~---~~Alf~aekl~~~~~-~~~~~~~la~~l~~~g~~~~A~~~l~ 63 (136)
+=++.|+=+-.+.+..+.. ++|+-++..+..... +++++..++.+++..|+++=.-.+.+
T Consensus 18 eel~~LKFLc~d~i~~~kle~i~s~~dlf~~Le~~~~l~~~nl~~L~elL~~I~R~DLl~~v~~ 81 (91)
T 1a1w_A 18 SELTELKYLCLGRVGKRKLERVQSGLDLFSMLLEQNDLEPGHTELLRELLASLRRHDLLRRVDD 81 (91)
T ss_dssp HHHHHHHHHHHHHTCSHHHHHCSSSHHHHHHHHHTTSCBTTBCHHHHHHHHHHTCSHHHHHHHH
T ss_pred HHHHHHHHHhHhhccchhhhccCCHHHHHHHHHHcCCCCcchHHHHHHHHHHCCHHHHHHHHHH
Confidence 3445566666666665544 455899999988886 88999999999999999876655443
No 296
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.38 E-value=93 Score=20.01 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Q 032655 2 REEEIEKLRGLVRDCVSKHLYSSAIFFANEVA 33 (136)
Q Consensus 2 ~~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~ 33 (136)
++++..++..++.+|+..++.++|+-.-+-+-
T Consensus 3 ~eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 3 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 36788999999999999999999988877764
No 297
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=25.10 E-value=98 Score=19.87 Aligned_cols=44 Identities=11% Similarity=0.233 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----cCCChHHHHHH
Q 032655 1 MREEEIEKLRGLVRDCVSKHLYSSAIFFANEVAA----LTNDPADVYMQ 45 (136)
Q Consensus 1 ~~~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~~----~~~~~~~~~~l 45 (136)
|++++-++.+.++..++...+ +.++.-|++.-- ..=+|+++..+
T Consensus 3 ~~~~~~~~Y~~iL~~yl~~~~-E~~Ly~aq~fsr~liek~I~PEeiV~i 50 (111)
T 2j6y_A 3 FREVIEQRYHQLLSRYIAELT-KTSLYQAQKFSRKTIEHQIPPEEIISI 50 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 468888999999999999777 688887777542 22278875544
No 298
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=23.03 E-value=1.6e+02 Score=18.91 Aligned_cols=52 Identities=13% Similarity=-0.077 Sum_probs=40.1
Q ss_pred HHHHHHHhccCC--ChHHHHHHHHHHhccCChHHHHHHHhcCcccccCcchHHHHHHHHHHccChhhhhh
Q 032655 26 IFFANEVAALTN--DPADVYMQAQALFLGRHYRRPFHLLNSSKIVLRDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 26 lf~aekl~~~~~--~~~~~~~la~~l~~~g~~~~A~~~l~~~~l~~~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
...||-++.-++ -.+..-..|.|+-..|+ .+++.+++.. ++.+.|+|++|..
T Consensus 7 ~lLAE~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~lIR~s---------------SLmNrG~Yq~Al~ 60 (115)
T 2uwj_G 7 RELAELALAGSGQHCHEEALCIAEWLERLGQ-DEAARLIRIS---------------SLANQGRYQEALA 60 (115)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHHHHHH---------------HHHHTTCHHHHHG
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHHHHHH---------------HHHcchhHHHHHH
Confidence 346777777776 46678888899999999 8888877653 3577899999975
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=22.04 E-value=1.1e+02 Score=20.60 Aligned_cols=34 Identities=18% Similarity=0.006 Sum_probs=26.2
Q ss_pred ccchHhHHHHHH-HHHHHHcCChHHHHHHHHHhhc
Q 032655 101 LKMISSAICFLR-GKAYEALGNCAQARLWLVSCDE 134 (136)
Q Consensus 101 ~~~~~a~i~~l~-G~~~~~~~~~~~A~~~y~~AL~ 134 (136)
++-...+.+|.- +..++..|++++|.+.|+..++
T Consensus 95 ~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 129 (152)
T 4a1g_A 95 GIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQ 129 (152)
T ss_dssp TTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444455566644 9999999999999999988764
No 300
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.90 E-value=1e+02 Score=17.21 Aligned_cols=35 Identities=3% Similarity=-0.054 Sum_probs=26.0
Q ss_pred HHHhccCCChHHHHHHHHHHhccCChHHHHHHHhc
Q 032655 30 NEVAALTNDPADVYMQAQALFLGRHYRRPFHLLNS 64 (136)
Q Consensus 30 ekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l~~ 64 (136)
+.+.+++|+.+.-......--.+|+.++|+..|-+
T Consensus 14 ~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 14 KAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 45678889766666666667788999999996644
No 301
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=21.77 E-value=2.2e+02 Score=20.13 Aligned_cols=86 Identities=10% Similarity=-0.039 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCh--hhHHH--HHHHHhccCC-------ChH---HHHHHHHHHhccC---ChHHHHHHHhcCcccc
Q 032655 7 EKLRGLVRDCVSKHLY--SSAIF--FANEVAALTN-------DPA---DVYMQAQALFLGR---HYRRPFHLLNSSKIVL 69 (136)
Q Consensus 7 ~~lr~~i~~~l~~~~~--~~Alf--~aekl~~~~~-------~~~---~~~~la~~l~~~g---~~~~A~~~l~~~~l~~ 69 (136)
.+.-.|+.++.-.+.. ++-+. .-||++..+. +|. -|..++..+ ..+ ++...+..+.+.++-.
T Consensus 34 ~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~ 112 (202)
T 3esl_A 34 LDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGT 112 (202)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcH
Confidence 3556677777766665 55565 6777776553 222 255556554 234 7778888887766656
Q ss_pred cCcchHHHHHHHHHHccChhhhhh
Q 032655 70 RDLRFRYLAAKCLEELRSGTSVCR 93 (136)
Q Consensus 70 ~~~~~~~l~a~c~~~l~~~~ea~~ 93 (136)
.+..++--.|..+...|+|++|.+
T Consensus 113 ~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 113 KLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHH
Confidence 778888889999999999999964
No 302
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=21.66 E-value=1.1e+02 Score=16.56 Aligned_cols=33 Identities=12% Similarity=0.036 Sum_probs=20.6
Q ss_pred HHHhccCCChHHHHHHHHHHhccCChHHHHHHH
Q 032655 30 NEVAALTNDPADVYMQAQALFLGRHYRRPFHLL 62 (136)
Q Consensus 30 ekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l 62 (136)
+.+..++|+..-.-..-..--.+|+.++|+..|
T Consensus 9 ~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~L 41 (49)
T 1otr_A 9 SILMDMFPAISKSKLQVHLLENNNDLDLTIGLL 41 (49)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 346688895443333333345678999998855
No 303
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=20.94 E-value=76 Score=21.74 Aligned_cols=29 Identities=21% Similarity=0.005 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHHhccCChHHHHHHHhcC
Q 032655 37 NDPADVYMQAQALFLGRHYRRPFHLLNSS 65 (136)
Q Consensus 37 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~ 65 (136)
|+|+-++-+|.+|-..|.-++|-++++++
T Consensus 123 ~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 123 VSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 37888999999999999999999988763
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.66 E-value=1.3e+02 Score=20.07 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Q 032655 2 REEEIEKLRGLVRDCVSKHLYSSAIFFANEVA 33 (136)
Q Consensus 2 ~~~~~~~lr~~i~~~l~~~~~~~Alf~aekl~ 33 (136)
++++..++..++.+|+..++.++|+-.-+-+-
T Consensus 5 ~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 5 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 36788999999999999999999988877663
No 305
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.30 E-value=1.2e+02 Score=17.46 Aligned_cols=33 Identities=3% Similarity=-0.068 Sum_probs=23.5
Q ss_pred HHHhccCCChHHHHHHHHHHhccCChHHHHHHH
Q 032655 30 NEVAALTNDPADVYMQAQALFLGRHYRRPFHLL 62 (136)
Q Consensus 30 ekl~~~~~~~~~~~~la~~l~~~g~~~~A~~~l 62 (136)
+.+-+++|+.+.-......-...|+.+.|++.|
T Consensus 23 ~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~L 55 (67)
T 2dhy_A 23 DDFKTMFPNMDYDIIECVLRANSGAVDATIDQL 55 (67)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 457788996665555555566788999998855
Done!