Query 032657
Match_columns 136
No_of_seqs 105 out of 230
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:16:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2729 ER vesicle integral me 100.0 2.9E-58 6.2E-63 340.3 16.1 132 3-134 6-137 (137)
2 PF03311 Cornichon: Cornichon 100.0 4.8E-53 1.1E-57 311.8 15.2 126 1-126 1-128 (128)
3 PLN00174 predicted protein; Pr 100.0 3.4E-49 7.3E-54 298.2 15.2 116 16-131 24-140 (160)
4 PF04144 SCAMP: SCAMP family; 66.8 51 0.0011 25.3 8.0 77 5-91 100-177 (177)
5 TIGR00945 tatC Twin arginine t 62.6 50 0.0011 26.0 7.4 24 66-89 63-86 (215)
6 CHL00182 tatC Sec-independent 61.0 52 0.0011 26.7 7.4 47 65-122 83-129 (249)
7 TIGR01912 TatC-Arch Twin argin 60.1 57 0.0012 26.2 7.5 45 66-121 71-115 (237)
8 PF00902 TatC: Sec-independent 59.8 81 0.0018 24.5 8.4 25 65-89 66-90 (215)
9 PF07584 BatA: Aerotolerance r 58.9 45 0.00098 21.8 5.7 42 67-108 7-50 (77)
10 PRK10921 twin-arginine protein 57.1 65 0.0014 26.2 7.4 24 66-89 74-97 (258)
11 PRK07419 1,4-dihydroxy-2-napht 43.2 1.9E+02 0.0042 24.0 13.0 87 16-104 184-280 (304)
12 cd07153 Fur_like Ferric uptake 39.6 8.9 0.00019 26.5 -0.2 36 76-111 15-51 (116)
13 PF11044 TMEMspv1-c74-12: Plec 36.5 94 0.002 19.2 4.0 26 1-26 1-29 (49)
14 PF01405 PsbT: Photosystem II 33.3 80 0.0017 17.7 3.0 21 3-23 2-22 (29)
15 PF04893 Yip1: Yip1 domain; I 32.9 83 0.0018 22.3 4.1 16 92-107 2-17 (172)
16 TIGR02056 ChlG chlorophyll syn 30.9 3E+02 0.0066 22.6 7.6 19 70-88 258-276 (306)
17 PF09889 DUF2116: Uncharacteri 30.0 1.5E+02 0.0034 19.0 4.7 28 102-129 29-56 (59)
18 PRK11875 psbT photosystem II r 29.9 91 0.002 17.7 2.9 22 3-24 2-23 (31)
19 PRK12592 putative monovalent c 29.0 68 0.0015 23.7 3.0 40 69-108 82-123 (126)
20 COG0805 TatC Sec-independent p 27.5 2.5E+02 0.0055 23.0 6.4 26 67-93 78-103 (255)
21 PRK09462 fur ferric uptake reg 27.2 19 0.00042 26.3 -0.2 35 77-111 33-68 (148)
22 KOG3801 Uncharacterized conser 26.9 72 0.0016 22.6 2.6 28 79-106 24-60 (94)
23 COG0382 UbiA 4-hydroxybenzoate 26.4 3.5E+02 0.0075 21.8 8.6 77 18-97 59-145 (289)
24 PF12056 DUF3537: Protein of u 25.5 4.7E+02 0.01 23.1 8.6 97 3-121 26-128 (398)
25 PF00873 ACR_tran: AcrB/AcrD/A 24.3 3.4E+02 0.0073 26.1 7.5 73 53-125 459-543 (1021)
26 CHL00031 psbT photosystem II p 23.7 95 0.0021 17.9 2.3 21 3-23 2-22 (33)
27 PF01475 FUR: Ferric uptake re 22.8 36 0.00077 23.7 0.5 34 77-110 23-57 (120)
28 PRK13553 fumarate reductase cy 22.7 4.5E+02 0.0097 21.8 10.5 106 3-128 120-230 (258)
29 PF11119 DUF2633: Protein of u 21.7 88 0.0019 20.3 2.1 28 105-133 4-31 (59)
30 PRK06080 1,4-dihydroxy-2-napht 21.5 4.3E+02 0.0093 21.2 12.7 20 71-90 243-262 (293)
31 PRK13105 ubiA prenyltransferas 20.0 5E+02 0.011 21.4 12.2 77 24-105 178-262 (282)
No 1
>KOG2729 consensus ER vesicle integral membrane protein involved in establishing cell polarity, signaling and protein degradation [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-58 Score=340.33 Aligned_cols=132 Identities=40% Similarity=0.794 Sum_probs=128.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCHHHHHhhcCcchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 032657 3 DLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFN 82 (136)
Q Consensus 3 ~~~~wi~a~~~~~~ll~~~vy~~i~l~DLe~D~iNp~d~~~~lN~lv~pE~~~~~~l~~l~ll~g~w~~~lln~P~l~y~ 82 (136)
+.++|..+++..++++++++||+|+++|||+||+||+|+|||+|++|+||+++||++|++++++|||+++++|+|+++||
T Consensus 6 ~~~~~~~~~l~~~~li~~~iy~vI~~~DLe~DyiNPid~c~rlN~lVlPE~ilh~~KOGlfLl~g~W~~fllnlP~l~y~ 85 (137)
T KOG2729|consen 6 AAFLYTLSLLVCAALIFLQIYFVICLADLETDYINPIDLCSRLNRLVLPEFILHGLLCLLFLLTGHWFMFLLNLPLLAYN 85 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence 56677788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 032657 83 VRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWLLWTVGRD 134 (136)
Q Consensus 83 ~~~y~~~~~l~D~TeIf~~L~~~~k~~~iKl~fy~l~Ff~~ly~mi~~lv~~ 134 (136)
+++|.+|+|++|||||||++++|||||++|+|||+++||+|+||||+|++++
T Consensus 86 ~~~y~~r~~l~D~TeI~n~L~~~~k~~~~KL~fyll~FF~yly~mI~slv~~ 137 (137)
T KOG2729|consen 86 AWLYMKRPHLYDPTEIFNTLSSEKKERWIKLAFYLLSFFYYLYWMIYSLVSS 137 (137)
T ss_pred HHHHHcCCcccCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999975
No 2
>PF03311 Cornichon: Cornichon protein; InterPro: IPR003377 The drosophila cornichon protein (gene: cni) [] is required in the germline for dorsal-ventral signalling. The dorsal-ventral pattern formation involves a reorganisation of the microtubule network correlated with the movement of the oocyte nucleus, and depending on the initial correct establishment of the anterior-posterior axis via a signal from the oocyte produced by cornichon and gurken and received by torpedo protein in the follicle cells. The biochemical function of the cornichon protein is currently not known. It is a protein of 144 residues that seems to contain three transmembrane regions. ; GO: 0035556 intracellular signal transduction, 0016020 membrane
Probab=100.00 E-value=4.8e-53 Score=311.80 Aligned_cols=126 Identities=44% Similarity=0.853 Sum_probs=122.8
Q ss_pred Ch-hH-HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCHHHHHhhcCcchHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 032657 1 ME-DL-LGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPY 78 (136)
Q Consensus 1 m~-~~-~~wi~a~~~~~~ll~~~vy~~i~l~DLe~D~iNp~d~~~~lN~lv~pE~~~~~~l~~l~ll~g~w~~~lln~P~ 78 (136)
|+ +. ..|++|++++++++++++|+++++||||+||+||+|+|||+||+|+||+++|++++++++++|||+++++|+|+
T Consensus 1 m~~~~~~~~i~alll~~~ll~~~vy~ii~l~DLe~D~iNp~d~c~~lN~lv~pE~~~h~~l~~l~ll~g~w~~~llnlPl 80 (128)
T PF03311_consen 1 MAFDFIVLWILALLLTAALLFIVVYFIICLSDLECDYINPIDLCSRLNPLVLPEYIIHGFLCLLFLLTGHWFLFLLNLPL 80 (128)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 44 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032657 79 LYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFW 126 (136)
Q Consensus 79 l~y~~~~y~~~~~l~D~TeIf~~L~~~~k~~~iKl~fy~l~Ff~~ly~ 126 (136)
++||+++|.+|+|++|||||||+|++|||||++|+|||+++||+|+||
T Consensus 81 ~~y~~~~~~~~~~l~D~T~If~~L~~~kk~~~iKl~~yll~ff~yly~ 128 (128)
T PF03311_consen 81 LAYHIYRYFRRQHLYDPTEIFNQLKREKKESFIKLGFYLLLFFYYLYR 128 (128)
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999996
No 3
>PLN00174 predicted protein; Provisional
Probab=100.00 E-value=3.4e-49 Score=298.16 Aligned_cols=116 Identities=27% Similarity=0.621 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhhccccccCCHHHHHhhcCcchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCccch
Q 032657 16 SLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHLVDV 95 (136)
Q Consensus 16 ~ll~~~vy~~i~l~DLe~D~iNp~d~~~~lN~lv~pE~~~~~~l~~l~ll~g~w~~~lln~P~l~y~~~~y~~~~~l~D~ 95 (136)
....+..|....+||||+||+||+|+|+|+|++|+||+++|+++|++|+++|+|+++++|+|+++||++||.+|+|++||
T Consensus 24 ~~~~~~~~~~~~lsDLE~DYiNPiD~CnrLN~lVlPEyiiH~~l~lLfLltG~W~~fLLNlPll~Yhv~~y~~r~hL~D~ 103 (160)
T PLN00174 24 MVIICLGYTYKLLQDLSTDTVNPVEVCDKVNQLKVPEYLAHLFLSIAFVIRGWWIVGFLNFPFIFYNFAQWYEGKHQLDS 103 (160)
T ss_pred HHHHHhcchHHHHHHhhhccCCHHHHHHHhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCH
Confidence 34566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Q 032657 96 TEIYSQLTWEKHLRLYKLCYLIILLVLCIF-WLLWTV 131 (136)
Q Consensus 96 TeIf~~L~~~~k~~~iKl~fy~l~Ff~~ly-~mi~~l 131 (136)
|||||+|++|||+|++|+|||+++||+|+| |||++.
T Consensus 104 TeIfn~L~~~kKe~~iKLaFYLl~FF~~ly~~mI~~~ 140 (160)
T PLN00174 104 AQIFNVLSRELRVIKAKSAFFIIIVIYTIWEWMIWVP 140 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999 999985
No 4
>PF04144 SCAMP: SCAMP family; InterPro: IPR007273 In vertebrates, secretory carrier membrane proteins (SCAMPs) 1-3 constitute a family of putative membrane-trafficking proteins composed of cytoplasmic N-terminal sequences with NPF repeats, four central transmembrane regions (TMRs), and a cytoplasmic tail. SCAMPs probably function in endocytosis by recruiting EH-domain proteins to the N-terminal NPF repeats but may have additional functions mediated by their other sequences [].; GO: 0015031 protein transport, 0016021 integral to membrane
Probab=66.81 E-value=51 Score=25.27 Aligned_cols=77 Identities=13% Similarity=0.208 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-cccCCHHHHHhhcCcchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 032657 5 LGWFLVFIFLISLLGILSYQLMYLTDLE-GDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFNV 83 (136)
Q Consensus 5 ~~wi~a~~~~~~ll~~~vy~~i~l~DLe-~D~iNp~d~~~~lN~lv~pE~~~~~~l~~l~ll~g~w~~~lln~P~l~y~~ 83 (136)
.-+...++...+-+..++++.+-..+.- +-.++.+|.-++ |.. .....++.+.-|....+....+...+
T Consensus 100 ~~f~~ff~~~~~~i~f~i~~aIG~p~~G~~G~i~ai~~~~~-~~~---------vgi~~~I~a~~w~~~~~~~~~~l~kv 169 (177)
T PF04144_consen 100 FRFMWFFFFFFVHIIFCIIMAIGIPGWGSCGWITAIDVFSN-NKA---------VGILMLIVAILWTLEAVLSFWLLKKV 169 (177)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHcc-Cch---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777888999999888764 889999999888 754 33334455777787777788888889
Q ss_pred HHHhhcCC
Q 032657 84 RLYTRRQH 91 (136)
Q Consensus 84 ~~y~~~~~ 91 (136)
+++.|++|
T Consensus 170 ~~~yR~~G 177 (177)
T PF04144_consen 170 HRYYRGTG 177 (177)
T ss_pred HHHhcCCC
Confidence 99998875
No 5
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=62.62 E-value=50 Score=25.95 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc
Q 032657 66 TEHWFMFLLSLPYLYFNVRLYTRR 89 (136)
Q Consensus 66 ~g~w~~~lln~P~l~y~~~~y~~~ 89 (136)
.+-+....++.|...|++|++.++
T Consensus 63 ~s~~~g~~~~~P~i~yqiw~Fi~P 86 (215)
T TIGR00945 63 LSLIVGIILSSPVILYQIWAFILP 86 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345578899999999999999985
No 6
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=60.99 E-value=52 Score=26.67 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 032657 65 ITEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVL 122 (136)
Q Consensus 65 l~g~w~~~lln~P~l~y~~~~y~~~~~l~D~TeIf~~L~~~~k~~~iKl~fy~l~Ff~ 122 (136)
-.+-+....+..|...|.+|++.+. + |.++||+...|.......+|+
T Consensus 83 kls~~~g~~~a~P~i~yqiw~Fi~P-g----------Ly~~Er~~~~~~~~~s~~lF~ 129 (249)
T CHL00182 83 KISFYTGLLISSPFIIYQIILFILP-G----------LTKKERKIILPLLISSLVLFG 129 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-c----------cCHHHHHHHHHHHHHHHHHHH
Confidence 3455678899999999999999985 2 445555555555544444433
No 7
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=60.15 E-value=57 Score=26.20 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCccchhhHhhhHHHHHHHHHHHHHHHHHHHH
Q 032657 66 TEHWFMFLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLV 121 (136)
Q Consensus 66 ~g~w~~~lln~P~l~y~~~~y~~~~~l~D~TeIf~~L~~~~k~~~iKl~fy~l~Ff 121 (136)
.+-+....+..|...|.+|++.+. + |.++||+...|...-....|
T Consensus 71 ~s~~~g~~~~~P~i~yqiw~Fi~P-g----------Ly~~Er~~~~~~~~~~~~lF 115 (237)
T TIGR01912 71 SAFFIGLLLASPVLAYEAYRFIKP-A----------LKPHERRQVRLLGVIAVGLF 115 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-c----------ccHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999985 2 34445555555554443333
No 8
>PF00902 TatC: Sec-independent protein translocase protein (TatC); InterPro: IPR002033 Proteins encoded by the mttABC operon (formerly yigTUW), mediate a novel Sec-independent membrane targeting and translocation system in Escherichia coli that interacts with cofactor-containing redox proteins having a S/TRRXFLK "twin arginine" leader motif. This family contains the E. coli mttB gene (TATC) []. A functional Tat system or Delta pH-dependent pathway requires three integral membrane proteins: TatA/Tha4, TatB/Hcf106 and TatC/cpTatC. The TatC protein is essential for the function of both pathways. It might be involved in twin-arginine signal peptide recognition, protein translocation and proton translocation. Sequence analysis predicts that TatC contains six transmembrane helices (TMHs), and experimental data confirmed that N and C termini of TatC or cpTatC are exposed to the cytoplasmic or stromal face of the membrane. The cytoplasmic N terminus and the first cytoplasmic loop region of the E. coli TatC protein are essential for protein export. At least two TatC molecules co-exist within each Tat translocon [, ].
Probab=59.83 E-value=81 Score=24.54 Aligned_cols=25 Identities=16% Similarity=0.533 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhc
Q 032657 65 ITEHWFMFLLSLPYLYFNVRLYTRR 89 (136)
Q Consensus 65 l~g~w~~~lln~P~l~y~~~~y~~~ 89 (136)
-.+-|.....+.|...|+.|++.+.
T Consensus 66 k~s~~~~~~~~~P~~~yq~w~Fi~P 90 (215)
T PF00902_consen 66 KLSFFLGLIISLPYILYQIWAFIAP 90 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3556688999999999999999987
No 9
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=58.92 E-value=45 Score=21.78 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHH-HHHHHH-HHhhcCCccchhhHhhhHHHHHHH
Q 032657 67 EHWFMFLLSLPY-LYFNVR-LYTRRQHLVDVTEIYSQLTWEKHL 108 (136)
Q Consensus 67 g~w~~~lln~P~-l~y~~~-~y~~~~~l~D~TeIf~~L~~~~k~ 108 (136)
.+|+.+++-+|. ..++.. +-.+++..+-.++.+++...+.+.
T Consensus 7 P~~L~~Llllp~~i~~~~~~~~~~~~~~fs~~~~l~~~~~~~~~ 50 (77)
T PF07584_consen 7 PWYLWLLLLLPLPIIIHYFLRRRRRRVRFSSLRLLKRLPPSRRS 50 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcccCCHHHHHHhCcccch
Confidence 344555555666 444444 434444567777778755554444
No 10
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=57.13 E-value=65 Score=26.23 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc
Q 032657 66 TEHWFMFLLSLPYLYFNVRLYTRR 89 (136)
Q Consensus 66 ~g~w~~~lln~P~l~y~~~~y~~~ 89 (136)
..-+....+..|...|.+|++.++
T Consensus 74 ~sl~~g~~la~P~ilyqiw~Fi~P 97 (258)
T PRK10921 74 LTFMVSLILSAPVILYQVWAFIAP 97 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445577899999999999999985
No 11
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=43.21 E-value=1.9e+02 Score=24.01 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhccccccCC-----HHHHHhhcCcchHH-HHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHH
Q 032657 16 SLLGILSYQLMYLTDLEGDYIN-----PYDSAAQINMLVFP-EFFTQGTLCILFLITE----HWFMFLLSLPYLYFNVRL 85 (136)
Q Consensus 16 ~ll~~~vy~~i~l~DLe~D~iN-----p~d~~~~lN~lv~p-E~~~~~~l~~l~ll~g----~w~~~lln~P~l~y~~~~ 85 (136)
+++...+-++=.+.|.|.|-.| |+-..+|--+.+.. -+..--+..+.....| .....++.+|...-+.++
T Consensus 184 gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~Ll~ll~lPl~~~~~~~ 263 (304)
T PRK07419 184 GLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTTLLSLLSLPFAIKLIRL 263 (304)
T ss_pred HHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566678899999554 11111111111111 1111111222222222 235678889988888777
Q ss_pred HhhcCCccchhhHhhhHHH
Q 032657 86 YTRRQHLVDVTEIYSQLTW 104 (136)
Q Consensus 86 y~~~~~l~D~TeIf~~L~~ 104 (136)
..+.+. |+.+.-+.+++
T Consensus 264 ~~~~~~--~~~~l~~~l~~ 280 (304)
T PRK07419 264 VRENHD--QPEKVSNSKFI 280 (304)
T ss_pred HHHcCC--CHHHHHHHHHH
Confidence 655422 55554444433
No 12
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=39.59 E-value=8.9 Score=26.46 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhcCC-ccchhhHhhhHHHHHHHHHH
Q 032657 76 LPYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 111 (136)
Q Consensus 76 ~P~l~y~~~~y~~~~~-l~D~TeIf~~L~~~~k~~~i 111 (136)
-|+.+..++.-.++++ -++.++++|.|+...+.+.+
T Consensus 15 ~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 15 GHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4567788887777665 48999999999988877654
No 13
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=36.53 E-value=94 Score=19.24 Aligned_cols=26 Identities=19% Similarity=0.471 Sum_probs=19.3
Q ss_pred ChhHHHHHHHHHHHHHH---HHHHHHHHH
Q 032657 1 MEDLLGWFLVFIFLISL---LGILSYQLM 26 (136)
Q Consensus 1 m~~~~~wi~a~~~~~~l---l~~~vy~~i 26 (136)
|+.-..|+++.++..+. +++++||=+
T Consensus 1 mp~wlt~iFsvvIil~If~~iGl~IyQki 29 (49)
T PF11044_consen 1 MPTWLTTIFSVVIILGIFAWIGLSIYQKI 29 (49)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667888888776655 788888754
No 14
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=33.28 E-value=80 Score=17.68 Aligned_cols=21 Identities=14% Similarity=0.244 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 032657 3 DLLGWFLVFIFLISLLGILSY 23 (136)
Q Consensus 3 ~~~~wi~a~~~~~~ll~~~vy 23 (136)
|.+.+.+.++.+.+.+++.++
T Consensus 2 Ea~vY~~ll~~tlgilffAI~ 22 (29)
T PF01405_consen 2 EALVYTFLLIGTLGILFFAIF 22 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhhh
Confidence 677788888777777777664
No 15
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=32.91 E-value=83 Score=22.29 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=14.2
Q ss_pred ccchhhHhhhHHHHHH
Q 032657 92 LVDVTEIYSQLTWEKH 107 (136)
Q Consensus 92 l~D~TeIf~~L~~~~k 107 (136)
+.||.|.|++++++++
T Consensus 2 l~~P~~~f~~~~~~~~ 17 (172)
T PF04893_consen 2 LFSPREFFRRLRESPR 17 (172)
T ss_pred ccCHHHHHHHHHhccc
Confidence 4799999999998888
No 16
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=30.88 E-value=3e+02 Score=22.61 Aligned_cols=19 Identities=16% Similarity=0.443 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 032657 70 FMFLLSLPYLYFNVRLYTR 88 (136)
Q Consensus 70 ~~~lln~P~l~y~~~~y~~ 88 (136)
...++.+|...++.++..+
T Consensus 258 ll~ll~~p~~~~~~~~~~~ 276 (306)
T TIGR02056 258 ALVALIIPQITFQDKYFLK 276 (306)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4588889999999887776
No 17
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=30.03 E-value=1.5e+02 Score=18.98 Aligned_cols=28 Identities=14% Similarity=0.438 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032657 102 LTWEKHLRLYKLCYLIILLVLCIFWLLW 129 (136)
Q Consensus 102 L~~~~k~~~iKl~fy~l~Ff~~ly~mi~ 129 (136)
.++.+|.+..+..++++++.+.+.++..
T Consensus 29 ~k~qk~~~~~~~i~~~~~i~~l~v~~~~ 56 (59)
T PF09889_consen 29 RKRQKRMRKTQYIFFGIFILFLAVWIFM 56 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666655544443
No 18
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=29.86 E-value=91 Score=17.69 Aligned_cols=22 Identities=9% Similarity=0.153 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 032657 3 DLLGWFLVFIFLISLLGILSYQ 24 (136)
Q Consensus 3 ~~~~wi~a~~~~~~ll~~~vy~ 24 (136)
|.+++.+.+..+.+.+|+.+++
T Consensus 2 Eal~Ytfll~~tlgiiFFAIfF 23 (31)
T PRK11875 2 ESFAYILILTLALVTLFFAIAF 23 (31)
T ss_pred hhHHHHHHHHHHHHHHHHhhhc
Confidence 6677777777777777776653
No 19
>PRK12592 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=28.97 E-value=68 Score=23.66 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcc-chhhHhh-hHHHHHHH
Q 032657 69 WFMFLLSLPYLYFNVRLYTRRQHLV-DVTEIYS-QLTWEKHL 108 (136)
Q Consensus 69 w~~~lln~P~l~y~~~~y~~~~~l~-D~TeIf~-~L~~~~k~ 108 (136)
|+..++..|....-+.|--.|++.. |+.++.+ +..+++|+
T Consensus 82 ~~FlllT~Pvaah~iaRAAyr~g~~~~~~~~~~~~~~~~~~~ 123 (126)
T PRK12592 82 VLFALLTSPVTAQRVGRVSRREGLYGAKDTMSRNQAPAERKP 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCccccccccccchhhh
Confidence 4667788999999999998888876 8888888 66666665
No 20
>COG0805 TatC Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion]
Probab=27.50 E-value=2.5e+02 Score=23.03 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCcc
Q 032657 67 EHWFMFLLSLPYLYFNVRLYTRRQHLV 93 (136)
Q Consensus 67 g~w~~~lln~P~l~y~~~~y~~~~~l~ 93 (136)
+-+...++..|..+|..|++.++ |+|
T Consensus 78 a~~~gl~~a~P~i~yq~w~FiaP-GLy 103 (255)
T COG0805 78 ALFAGLLLALPVILYQLWAFIAP-GLY 103 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-ccc
Confidence 34477899999999999999987 665
No 21
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.24 E-value=19 Score=26.32 Aligned_cols=35 Identities=6% Similarity=-0.076 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCC-ccchhhHhhhHHHHHHHHHH
Q 032657 77 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 111 (136)
Q Consensus 77 P~l~y~~~~y~~~~~-l~D~TeIf~~L~~~~k~~~i 111 (136)
|+.+..++...++++ -+++++|||.|+.....+.+
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 677888887777665 48999999999988776654
No 22
>KOG3801 consensus Uncharacterized conserved protein BCN92 [RNA processing and modification]
Probab=26.90 E-value=72 Score=22.56 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcC---------CccchhhHhhhHHHHH
Q 032657 79 LYFNVRLYTRRQ---------HLVDVTEIYSQLTWEK 106 (136)
Q Consensus 79 l~y~~~~y~~~~---------~l~D~TeIf~~L~~~~ 106 (136)
.-||++.|..|+ ..=||+|+-+..+.-|
T Consensus 24 p~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eak 60 (94)
T KOG3801|consen 24 PQYNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAK 60 (94)
T ss_pred CcccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 458888887664 6789999988443333
No 23
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=26.38 E-value=3.5e+02 Score=21.83 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhccccccCCHHHHHhhcCc--chHHHHHHHHHHHHHH------HhhhH-HHHHHHH-HHHHHHHHHHHh
Q 032657 18 LGILSYQLMYLTDLEGDYINPYDSAAQINM--LVFPEFFTQGTLCILF------LITEH-WFMFLLS-LPYLYFNVRLYT 87 (136)
Q Consensus 18 l~~~vy~~i~l~DLe~D~iNp~d~~~~lN~--lv~pE~~~~~~l~~l~------ll~g~-w~~~lln-~P~l~y~~~~y~ 87 (136)
.-...|-+==+-|.|-|-.||-...|.+.. .-.+|...-++.+... .++.. +...+.. +....| .+.
T Consensus 59 ~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l~~~Y---~~~ 135 (289)
T COG0382 59 ARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAY---PFL 135 (289)
T ss_pred HHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHh
Confidence 333444445588999999999987788875 4455555444433222 22222 1122222 222233 788
Q ss_pred hcCCccchhh
Q 032657 88 RRQHLVDVTE 97 (136)
Q Consensus 88 ~~~~l~D~Te 97 (136)
||...+|..-
T Consensus 136 Kr~~~~~~~~ 145 (289)
T COG0382 136 KRFTFLPQLV 145 (289)
T ss_pred hcCCchHHHH
Confidence 8877666543
No 24
>PF12056 DUF3537: Protein of unknown function (DUF3537); InterPro: IPR021924 This family of transmembrane proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 427 to 453 amino acids in length.
Probab=25.47 E-value=4.7e+02 Score=23.08 Aligned_cols=97 Identities=18% Similarity=0.270 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCHHHHHhhcCcchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 032657 3 DLLGWFLVFIFLISLLGILSYQLMYLTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYFN 82 (136)
Q Consensus 3 ~~~~wi~a~~~~~~ll~~~vy~~i~l~DLe~D~iNp~d~~~~lN~lv~pE~~~~~~l~~l~ll~g~w~~~lln~P~l~y~ 82 (136)
.+++|..-+++..++=..+ .....-+|.+.+...|.|..=++ ||-++ ..+-|+ -+.-+
T Consensus 26 ~~~Sw~~F~ll~v~vP~~~-~~~~~c~~cd~~~~~~f~~~Vq~-----s~s~l---Aavsf~-------------cLS~~ 83 (398)
T PF12056_consen 26 AALSWSVFLLLAVAVPAAS-HFLLSCPSCDKYHIRPFEKLVQL-----SQSAL---AAVSFL-------------CLSHF 83 (398)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcCCCCchhcCCCchhHHHHH-----HHHHH---HHHHHH-------------HHHHH
Confidence 4567776555555544443 44555557777888887764332 22221 111222 23445
Q ss_pred HHHHhhcCCc-c-----chhhHhhhHHHHHHHHHHHHHHHHHHHH
Q 032657 83 VRLYTRRQHL-V-----DVTEIYSQLTWEKHLRLYKLCYLIILLV 121 (136)
Q Consensus 83 ~~~y~~~~~l-~-----D~TeIf~~L~~~~k~~~iKl~fy~l~Ff 121 (136)
++||.-|+.+ + |.+++.+.=.++-+.++.-|+..++=-|
T Consensus 84 ~rkyGlRr~LflD~l~~~s~~vr~gY~~~l~~sfrlLa~~vLPcf 128 (398)
T PF12056_consen 84 LRKYGLRRFLFLDKLRDDSEEVRRGYTRQLNRSFRLLACWVLPCF 128 (398)
T ss_pred hHhcCceeeeeecccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788877744 3 5667777777777888887877766433
No 25
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=24.33 E-value=3.4e+02 Score=26.08 Aligned_cols=73 Identities=21% Similarity=0.328 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCCc------cc-----hhhHhh-hHHHHHHHHHHHHHHHHHHH
Q 032657 53 FFTQGTLCILFLITEHWFMFLLSLPYLYFNVRLYTRRQHL------VD-----VTEIYS-QLTWEKHLRLYKLCYLIILL 120 (136)
Q Consensus 53 ~~~~~~l~~l~ll~g~w~~~lln~P~l~y~~~~y~~~~~l------~D-----~TeIf~-~L~~~~k~~~iKl~fy~l~F 120 (136)
+.-....++.+.+...|+..+.-+|.+++++.+-.+++.. .| .++.|+ -|++.-|.++.-++..++++
T Consensus 459 ~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~Y~~lL~~~L~~~~~~l~i~l~l~ 538 (1021)
T PF00873_consen 459 FFRPLALTVIIALIASLLVALTLVPALAALFLKPKKKSSKKRFFSKFDRFFDRLQRGYRRLLRWALRHPKLVLLIALLLL 538 (1021)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS----TT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccccccccccchhhhhhhhhhcccchhhhhhhhh
Confidence 3333446667788889999999999999887544443221 11 122233 45666666666666666666
Q ss_pred HHHHH
Q 032657 121 VLCIF 125 (136)
Q Consensus 121 f~~ly 125 (136)
+..++
T Consensus 539 i~s~~ 543 (1021)
T PF00873_consen 539 ILSLF 543 (1021)
T ss_dssp HHHHH
T ss_pred hhhhc
Confidence 55443
No 26
>CHL00031 psbT photosystem II protein T
Probab=23.72 E-value=95 Score=17.87 Aligned_cols=21 Identities=5% Similarity=0.249 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 032657 3 DLLGWFLVFIFLISLLGILSY 23 (136)
Q Consensus 3 ~~~~wi~a~~~~~~ll~~~vy 23 (136)
|.+++.+.++.+.+.+|+.++
T Consensus 2 EalvYtfll~~tlgilFFAI~ 22 (33)
T CHL00031 2 EALVYTFLLVSTLGIIFFAIF 22 (33)
T ss_pred chhHHHHHHHHHHHHHHHhhe
Confidence 667777777777777776654
No 27
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=22.80 E-value=36 Score=23.73 Aligned_cols=34 Identities=12% Similarity=0.124 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhcC-CccchhhHhhhHHHHHHHHH
Q 032657 77 PYLYFNVRLYTRRQ-HLVDVTEIYSQLTWEKHLRL 110 (136)
Q Consensus 77 P~l~y~~~~y~~~~-~l~D~TeIf~~L~~~~k~~~ 110 (136)
|+.+..++.-.+++ .-++.++|||.|+...+.+.
T Consensus 23 ~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGL 57 (120)
T ss_dssp SEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCe
Confidence 55666777666555 46899999999988877654
No 28
>PRK13553 fumarate reductase cytochrome b-556 subunit; Provisional
Probab=22.65 E-value=4.5e+02 Score=21.79 Aligned_cols=106 Identities=15% Similarity=0.239 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccCCHHHHHhhcCcchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 032657 3 DLLGWFLVFIFLISLLGILSYQLMY-LTDLEGDYINPYDSAAQINMLVFPEFFTQGTLCILFLITEHWFMFLLSLPYLYF 81 (136)
Q Consensus 3 ~~~~wi~a~~~~~~ll~~~vy~~i~-l~DLe~D~iNp~d~~~~lN~lv~pE~~~~~~l~~l~ll~g~w~~~lln~P~l~y 81 (136)
|...|.+=.+.-.+++++...|+-. ..|.++ ++|.....|+-. .+.|..=++.+|...+
T Consensus 120 DT~lW~~Q~iTG~ilf~~~~~Hl~~i~~~~~~--Ig~~~Sa~rv~~------------------~~~w~fYlvlL~~v~l 179 (258)
T PRK13553 120 DTSLWFIQAFTGFAMFFLASVHLYVMLTNPDK--IGPYGSSDRVVS------------------QNMWLLYIVLLFAVEL 179 (258)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHhhhcCccc--cCchhhHHHHhC------------------CcHHHHHHHHHHHHHH
Confidence 5667777666666777777777753 444443 667766665531 2356777788888888
Q ss_pred HHH----HHhhcCCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032657 82 NVR----LYTRRQHLVDVTEIYSQLTWEKHLRLYKLCYLIILLVLCIFWLL 128 (136)
Q Consensus 82 ~~~----~y~~~~~l~D~TeIf~~L~~~~k~~~iKl~fy~l~Ff~~ly~mi 128 (136)
|.. |..-+=|..+-.+..+.=++-+|-.++-.++++++-...+.+.+
T Consensus 180 H~~iGLyR~~VKWG~~~~~~~q~~R~~~~~v~~~i~v~f~~lGl~sL~af~ 230 (258)
T PRK13553 180 HGSIGLYRLAVKWGWFEGKNPKESRKKLKKVKWALSVFFLVLGLLTLAAYI 230 (258)
T ss_pred HHHHhhhheeeEEEeecCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875 33334466554444333344455555556666666666665543
No 29
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=21.69 E-value=88 Score=20.31 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032657 105 EKHLRLYKLCYLIILLVLCIFWLLWTVGR 133 (136)
Q Consensus 105 ~~k~~~iKl~fy~l~Ff~~ly~mi~~lv~ 133 (136)
.++.++.|+. .+++|++..-|++|+.++
T Consensus 4 k~~~~mtriV-LLISfiIlfgRl~Y~~I~ 31 (59)
T PF11119_consen 4 KKNSRMTRIV-LLISFIILFGRLIYSAIG 31 (59)
T ss_pred cccchHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 3445566654 467788877788888764
No 30
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=21.52 E-value=4.3e+02 Score=21.19 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 032657 71 MFLLSLPYLYFNVRLYTRRQ 90 (136)
Q Consensus 71 ~~lln~P~l~y~~~~y~~~~ 90 (136)
..++.+|...++.++..+++
T Consensus 243 l~ll~~p~~~~~~~~~~~~~ 262 (293)
T PRK06080 243 LFLLSLPLAVKAARPVLRKQ 262 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 56778999999988777653
No 31
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=20.01 E-value=5e+02 Score=21.36 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=42.1
Q ss_pred HHHHhhccccccCC-----HHHHHhhcCcchHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHh-hcCCccch
Q 032657 24 QLMYLTDLEGDYIN-----PYDSAAQINMLVFPEFFTQGTLCILFLITEH--WFMFLLSLPYLYFNVRLYT-RRQHLVDV 95 (136)
Q Consensus 24 ~~i~l~DLe~D~iN-----p~d~~~~lN~lv~pE~~~~~~l~~l~ll~g~--w~~~lln~P~l~y~~~~y~-~~~~l~D~ 95 (136)
-+-.+.|.|.|-.+ |.-...|-- ..--...|....++++..|+ +...++.+|...-|.++.. +++ |+
T Consensus 178 ii~~irDie~Dr~~G~~Tlpv~lG~~~a--~~~~~~l~~~a~~~~~~~~~~~~~l~ll~~p~~~~~~~~~~~~~~---~~ 252 (282)
T PRK13105 178 AFGAVQDVVADREAGIASIATVLGARRT--VRLAVGLYAAAAVLMLALPWPGWLAAVLALPYVVNTARFWSVTDA---DC 252 (282)
T ss_pred HHHhCcchHhHHHcCCccchHHhcHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCC---CH
Confidence 34458899998544 222222111 11123444443333333332 4678889999999997766 444 66
Q ss_pred hhHhhhHHHH
Q 032657 96 TEIYSQLTWE 105 (136)
Q Consensus 96 TeIf~~L~~~ 105 (136)
.+.-+++++-
T Consensus 253 ~~l~~~l~~~ 262 (282)
T PRK13105 253 ERANRGWRRF 262 (282)
T ss_pred HHHHHHHHHH
Confidence 6655555443
Done!