Query 032657
Match_columns 136
No_of_seqs 105 out of 230
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 06:23:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_T Photosystem II reaction 31.5 60 0.0021 17.8 3.2 21 3-23 2-22 (32)
2 4b4a_A TATC, SEC-independent p 28.0 53 0.0018 25.5 3.7 24 66-89 67-90 (249)
3 3cjs_B 50S ribosomal protein L 20.6 28 0.00094 22.3 0.6 13 35-47 31-43 (72)
4 3eyy_A Putative iron uptake re 19.1 50 0.0017 22.9 1.8 35 77-111 33-68 (145)
5 2a65_A Leutaa, Na(+):neurotran 18.2 3.8E+02 0.013 22.8 7.3 35 70-104 50-86 (519)
6 1n0x_P B2.1 peptide, immunoglo 17.4 17 0.00057 18.7 -0.8 11 27-37 6-16 (26)
7 1mzb_A Ferric uptake regulatio 17.4 52 0.0018 22.4 1.5 35 77-111 34-69 (136)
8 3mwm_A ZUR, putative metal upt 14.9 29 0.001 24.0 -0.4 34 77-110 29-63 (139)
9 1wib_A 60S ribosomal protein L 14.5 47 0.0016 22.3 0.6 13 35-47 42-54 (92)
10 2w57_A Ferric uptake regulatio 13.2 56 0.0019 22.8 0.7 34 77-110 33-67 (150)
No 1
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=31.52 E-value=60 Score=17.76 Aligned_cols=21 Identities=14% Similarity=0.471 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 032657 3 DLLGWFLVFIFLISLLGILSY 23 (136)
Q Consensus 3 ~~~~wi~a~~~~~~ll~~~vy 23 (136)
|.+++.+.++.+.+.+|+.++
T Consensus 2 Ea~vYt~ll~~tlgiiFFAI~ 22 (32)
T 3arc_T 2 ETITYVFIFACIIALFFFAIF 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhhh
Confidence 667777777777777766654
No 2
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=28.04 E-value=53 Score=25.46 Aligned_cols=24 Identities=8% Similarity=0.247 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhc
Q 032657 66 TEHWFMFLLSLPYLYFNVRLYTRR 89 (136)
Q Consensus 66 ~g~w~~~lln~P~l~y~~~~y~~~ 89 (136)
.+-+....+..|...|.+|++.++
T Consensus 67 vs~~~g~~~a~P~ilyQiw~Fi~P 90 (249)
T 4b4a_A 67 ISLAVGFIIASPVILYQFWRFIEP 90 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344577899999999999998875
No 3
>3cjs_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; S-adenosyl-L-methionine dependent methyltransferase; 1.37A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 3cju_B* 2bcw_A
Probab=20.58 E-value=28 Score=22.30 Aligned_cols=13 Identities=15% Similarity=-0.005 Sum_probs=11.3
Q ss_pred cCCHHHHHhhcCc
Q 032657 35 YINPYDSAAQINM 47 (136)
Q Consensus 35 ~iNp~d~~~~lN~ 47 (136)
=+|+.|.|+.+|.
T Consensus 31 Gvni~~f~k~fN~ 43 (72)
T 3cjs_B 31 GANIMEFVKAFNA 43 (72)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3799999999995
No 4
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=19.13 E-value=50 Score=22.92 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCC-ccchhhHhhhHHHHHHHHHH
Q 032657 77 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 111 (136)
Q Consensus 77 P~l~y~~~~y~~~~~-l~D~TeIf~~L~~~~k~~~i 111 (136)
|+.+..++.-.++++ -+++++|||+|+.....+.+
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 567777887776664 58999999999988877643
No 5
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=18.16 E-value=3.8e+02 Score=22.81 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHH--HHhhcCCccchhhHhhhHHH
Q 032657 70 FMFLLSLPYLYFNVR--LYTRRQHLVDVTEIYSQLTW 104 (136)
Q Consensus 70 ~~~lln~P~l~y~~~--~y~~~~~l~D~TeIf~~L~~ 104 (136)
.+++..+|++.-... ||.++.+.-.|.+.|+++.+
T Consensus 50 ~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~ 86 (519)
T 2a65_A 50 AFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWR 86 (519)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcC
Confidence 677889999988777 76665666689999988864
No 6
>1n0x_P B2.1 peptide, immunoglobulin heavy chain; antibody-peptide complex, peptide dimer, immune system; HET: CXS; 1.80A {Homo sapiens}
Probab=17.45 E-value=17 Score=18.71 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=8.1
Q ss_pred HhhccccccCC
Q 032657 27 YLTDLEGDYIN 37 (136)
Q Consensus 27 ~l~DLe~D~iN 37 (136)
++||||..++.
T Consensus 6 mfsdlenrcia 16 (26)
T 1n0x_P 6 MFSDLENRCIA 16 (26)
T ss_dssp EEETTTTEEEE
T ss_pred hhhHHHHHHHH
Confidence 47889887764
No 7
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=17.43 E-value=52 Score=22.43 Aligned_cols=35 Identities=17% Similarity=-0.018 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhhcCC-ccchhhHhhhHHHHHHHHHH
Q 032657 77 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRLY 111 (136)
Q Consensus 77 P~l~y~~~~y~~~~~-l~D~TeIf~~L~~~~k~~~i 111 (136)
|+.+..++.-.++++ -++.++|||+|+.....+.+
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 567777886666553 58999999999988877643
No 8
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=14.92 E-value=29 Score=24.02 Aligned_cols=34 Identities=12% Similarity=-0.009 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhcCC-ccchhhHhhhHHHHHHHHH
Q 032657 77 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRL 110 (136)
Q Consensus 77 P~l~y~~~~y~~~~~-l~D~TeIf~~L~~~~k~~~ 110 (136)
|+.+..++.-.++++ -++.++|||+|+.....+.
T Consensus 29 h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 29 FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 556677776666554 4899999999998877654
No 9
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1
Probab=14.46 E-value=47 Score=22.25 Aligned_cols=13 Identities=15% Similarity=0.210 Sum_probs=11.3
Q ss_pred cCCHHHHHhhcCc
Q 032657 35 YINPYDSAAQINM 47 (136)
Q Consensus 35 ~iNp~d~~~~lN~ 47 (136)
=+||.|.|+.+|.
T Consensus 42 Glni~~f~k~fn~ 54 (92)
T 1wib_A 42 GLSPKKVGDDIAK 54 (92)
T ss_dssp CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3799999999995
No 10
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=13.15 E-value=56 Score=22.79 Aligned_cols=34 Identities=6% Similarity=-0.085 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcCC-ccchhhHhhhHHHHHHHHH
Q 032657 77 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRL 110 (136)
Q Consensus 77 P~l~y~~~~y~~~~~-l~D~TeIf~~L~~~~k~~~ 110 (136)
|+.+..++...++++ -++.++|||+|+.....+.
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 567778887666553 5899999999998877654
Done!