Query 032657
Match_columns 136
No_of_seqs 105 out of 230
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 06:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032657.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/032657hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mzba_ a.4.5.42 (A:) Ferric u 21.0 18 0.0013 23.0 1.5 34 77-110 32-66 (134)
2 d1mmsa2 d.47.1.1 (A:8-70) Ribo 13.6 25 0.0018 20.6 0.6 13 35-47 25-37 (63)
3 d1of9a_ a.64.1.4 (A:) Ameobapo 10.5 54 0.004 18.6 1.5 26 20-46 50-75 (77)
4 d1nkla_ a.64.1.1 (A:) NK-lysin 9.4 1.2E+02 0.0084 16.8 2.8 27 19-46 48-74 (78)
5 d2gtga1 a.64.1.1 (A:2-79) Sapo 9.3 1.2E+02 0.0086 16.7 2.8 24 22-46 52-75 (78)
6 d3cjsb1 d.47.1.1 (B:1-70) Ribo 8.9 44 0.0032 19.8 0.6 13 35-47 31-43 (70)
7 d1wiba_ d.47.1.1 (A:) 60S ribo 8.6 45 0.0033 20.7 0.6 13 35-47 42-54 (92)
8 d2fuea1 c.108.1.10 (A:13-256) 8.5 31 0.0023 22.2 -0.3 17 35-51 228-244 (244)
9 d1ppjd2 f.23.11.1 (D:196-241) 8.5 1.6E+02 0.012 15.6 5.0 29 106-134 6-37 (46)
10 d1otsa_ f.20.1.1 (A:) Clc chlo 8.4 1.7E+02 0.012 21.9 4.1 36 72-108 408-443 (444)
No 1
>d1mzba_ a.4.5.42 (A:) Ferric uptake regulation protein, FUR {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.99 E-value=18 Score=23.04 Aligned_cols=34 Identities=18% Similarity=-0.008 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhcCC-ccchhhHhhhHHHHHHHHH
Q 032657 77 PYLYFNVRLYTRRQH-LVDVTEIYSQLTWEKHLRL 110 (136)
Q Consensus 77 P~l~y~~~~y~~~~~-l~D~TeIf~~L~~~~k~~~ 110 (136)
|+.+..++...+.++ -+|.++|||.|+.....+.
T Consensus 32 h~sa~ei~~~l~~~~~~i~~aTVYR~L~~l~e~gl 66 (134)
T d1mzba_ 32 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 66 (134)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhccE
Confidence 667777887777664 5899999999998877654
No 2
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=13.56 E-value=25 Score=20.59 Aligned_cols=13 Identities=15% Similarity=0.148 Sum_probs=11.0
Q ss_pred cCCHHHHHhhcCc
Q 032657 35 YINPYDSAAQINM 47 (136)
Q Consensus 35 ~iNp~d~~~~lN~ 47 (136)
=+|.+|.|+..|.
T Consensus 25 GiNi~~F~k~fN~ 37 (63)
T d1mmsa2 25 GVNIMEFCKRFNA 37 (63)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 4799999999984
No 3
>d1of9a_ a.64.1.4 (A:) Ameobapore A {Entamoeba histolytica [TaxId: 5759]}
Probab=10.48 E-value=54 Score=18.58 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=17.8
Q ss_pred HHHHHHHHhhccccccCCHHHHHhhcC
Q 032657 20 ILSYQLMYLTDLEGDYINPYDSAAQIN 46 (136)
Q Consensus 20 ~~vy~~i~l~DLe~D~iNp~d~~~~lN 46 (136)
..-|.-..++.++.+ .||-+.|+.++
T Consensus 50 v~~y~~~ii~~l~~~-~~p~~iC~~l~ 75 (77)
T d1of9a_ 50 LDFGIDKLIQLIEDK-VDANAICAKIH 75 (77)
T ss_dssp HHHCHHHHHHHHHHT-CCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHhcC
Confidence 344555566666664 59999998875
No 4
>d1nkla_ a.64.1.1 (A:) NK-lysin, NKL {Pig (Sus scrofa) [TaxId: 9823]}
Probab=9.41 E-value=1.2e+02 Score=16.85 Aligned_cols=27 Identities=15% Similarity=-0.001 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhccccccCCHHHHHhhcC
Q 032657 19 GILSYQLMYLTDLEGDYINPYDSAAQIN 46 (136)
Q Consensus 19 ~~~vy~~i~l~DLe~D~iNp~d~~~~lN 46 (136)
++.-|.-..++.++. ..||-+.|+.++
T Consensus 48 ~v~~y~~~ii~~l~~-~~~p~~iC~~l~ 74 (78)
T d1nkla_ 48 IMRSFLRRISWDILT-GKKPQAICVDIK 74 (78)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh-CCCHHHHHhhhC
Confidence 344455555666666 569999999875
No 5
>d2gtga1 a.64.1.1 (A:2-79) Saposin C {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.27 E-value=1.2e+02 Score=16.66 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=15.5
Q ss_pred HHHHHHhhccccccCCHHHHHhhcC
Q 032657 22 SYQLMYLTDLEGDYINPYDSAAQIN 46 (136)
Q Consensus 22 vy~~i~l~DLe~D~iNp~d~~~~lN 46 (136)
-|.=..++-++. ..||-+.|+.++
T Consensus 52 ~y~~~ii~~l~~-~~~p~~iC~~l~ 75 (78)
T d2gtga1 52 TYGSSILSILLE-EVSPELVCSMLH 75 (78)
T ss_dssp HHHHHHHHHHHT-TCCHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CCCHHHHHHHcC
Confidence 333334444544 679999999876
No 6
>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=8.91 E-value=44 Score=19.80 Aligned_cols=13 Identities=15% Similarity=-0.005 Sum_probs=11.0
Q ss_pred cCCHHHHHhhcCc
Q 032657 35 YINPYDSAAQINM 47 (136)
Q Consensus 35 ~iNp~d~~~~lN~ 47 (136)
=+|..|+|+..|.
T Consensus 31 GiNi~~Fck~fN~ 43 (70)
T d3cjsb1 31 GANIMEFVKAFNA 43 (70)
T ss_dssp TCCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHH
Confidence 4799999999984
No 7
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.64 E-value=45 Score=20.72 Aligned_cols=13 Identities=15% Similarity=0.210 Sum_probs=11.1
Q ss_pred cCCHHHHHhhcCc
Q 032657 35 YINPYDSAAQINM 47 (136)
Q Consensus 35 ~iNp~d~~~~lN~ 47 (136)
=+|+.++|+++|.
T Consensus 42 Gini~~f~k~fN~ 54 (92)
T d1wiba_ 42 GLSPKKVGDDIAK 54 (92)
T ss_dssp CSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3799999999995
No 8
>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.52 E-value=31 Score=22.15 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=14.2
Q ss_pred cCCHHHHHhhcCcchHH
Q 032657 35 YINPYDSAAQINMLVFP 51 (136)
Q Consensus 35 ~iNp~d~~~~lN~lv~p 51 (136)
-.||.|..++++.+++|
T Consensus 228 v~na~~~~k~~~~~~~~ 244 (244)
T d2fuea1 228 VVSPQDTVQRCREIFFP 244 (244)
T ss_dssp CSSHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHhcCC
Confidence 35999999999988877
No 9
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.50 E-value=1.6e+02 Score=15.61 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHhhcC
Q 032657 106 KHLRLYKLCYLIILLV---LCIFWLLWTVGRD 134 (136)
Q Consensus 106 ~k~~~iKl~fy~l~Ff---~~ly~mi~~lv~~ 134 (136)
+|.--+|....+.++. +|.-|-+||.+.+
T Consensus 6 RK~mG~Kv~~~l~~l~~l~yy~KR~~Ws~lKs 37 (46)
T d1ppjd2 6 RKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKS 37 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3333444444444433 3344888887753
No 10
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=8.40 E-value=1.7e+02 Score=21.86 Aligned_cols=36 Identities=8% Similarity=-0.062 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCccchhhHhhhHHHHHHH
Q 032657 72 FLLSLPYLYFNVRLYTRRQHLVDVTEIYSQLTWEKHL 108 (136)
Q Consensus 72 ~lln~P~l~y~~~~y~~~~~l~D~TeIf~~L~~~~k~ 108 (136)
-++-.-+..+-+.+..+++.+|| +-+-|++++|++|
T Consensus 408 p~~ia~~~a~~v~~~~~~~siY~-~~l~~~~~~~~~~ 443 (444)
T d1otsa_ 408 PMIITGLGATLLAQFTGGKPLYS-AILARTLAKQEAE 443 (444)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHH-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCChHH-HHHHHHHHhhhcc
Confidence 34445567788888888888888 6666778777765
Done!