Query 032658
Match_columns 136
No_of_seqs 112 out of 556
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:17:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032658.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032658hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00154 histone H2A; Provisio 100.0 3.5E-48 7.7E-53 288.8 12.1 134 1-135 1-135 (136)
2 PLN00157 histone H2A; Provisio 100.0 1.2E-46 2.6E-51 279.8 10.7 109 25-134 13-122 (132)
3 PLN00156 histone H2AX; Provisi 100.0 1.7E-46 3.7E-51 280.8 10.9 109 25-134 16-125 (139)
4 PLN00153 histone H2A; Provisio 100.0 3.4E-46 7.4E-51 276.5 10.5 110 25-135 11-121 (129)
5 PTZ00017 histone H2A; Provisio 100.0 4.3E-46 9.4E-51 277.5 10.8 110 25-135 14-124 (134)
6 PTZ00252 histone H2A; Provisio 100.0 8.8E-46 1.9E-50 275.2 9.8 111 21-132 8-121 (134)
7 cd00074 H2A Histone 2A; H2A is 100.0 1.9E-44 4.1E-49 263.3 11.2 110 23-133 5-115 (115)
8 KOG1756 Histone 2A [Chromatin 100.0 1.3E-44 2.8E-49 266.4 9.1 116 18-134 6-123 (131)
9 smart00414 H2A Histone 2A. 100.0 2.2E-44 4.8E-49 259.6 9.5 104 30-134 1-105 (106)
10 COG5262 HTA1 Histone H2A [Chro 100.0 1.1E-42 2.3E-47 253.6 8.9 112 23-135 11-123 (132)
11 KOG1757 Histone 2A [Chromatin 100.0 2.8E-38 6E-43 229.2 4.9 111 25-135 17-127 (131)
12 PLN00155 histone H2A; Provisio 99.8 1.1E-20 2.4E-25 122.8 4.3 48 25-73 11-58 (58)
13 PF00125 Histone: Core histone 99.6 1.4E-15 3E-20 101.5 6.0 74 32-105 2-75 (75)
14 COG5247 BUR6 Class 2 transcrip 99.4 5.3E-13 1.2E-17 95.7 6.1 80 34-114 19-98 (113)
15 PLN00035 histone H4; Provision 99.1 6.2E-11 1.3E-15 85.3 5.3 71 29-103 22-92 (103)
16 PF00808 CBFD_NFYB_HMF: Histon 99.1 1.8E-10 3.9E-15 75.4 7.1 64 38-102 2-65 (65)
17 KOG1659 Class 2 transcription 99.1 9.6E-11 2.1E-15 93.5 6.2 78 35-113 10-87 (224)
18 PTZ00015 histone H4; Provision 99.0 5.8E-10 1.2E-14 80.2 6.4 69 31-103 25-93 (102)
19 COG2036 HHT1 Histones H3 and H 99.0 4.4E-10 9.5E-15 79.3 5.6 68 34-103 15-82 (91)
20 smart00803 TAF TATA box bindin 99.0 1.5E-09 3.2E-14 72.0 6.9 64 38-103 2-65 (65)
21 cd00076 H4 Histone H4, one of 98.8 9.6E-09 2.1E-13 71.7 6.6 69 32-104 9-77 (85)
22 smart00417 H4 Histone H4. 98.8 1.1E-08 2.3E-13 69.8 5.3 61 39-101 14-74 (74)
23 cd07981 TAF12 TATA Binding Pro 98.2 5.7E-06 1.2E-10 55.6 6.7 65 40-105 3-67 (72)
24 cd07979 TAF9 TATA Binding Prot 98.2 6E-06 1.3E-10 60.4 6.5 61 42-104 5-65 (117)
25 KOG1657 CCAAT-binding factor, 98.2 1.9E-06 4.2E-11 70.0 4.1 80 34-114 70-149 (236)
26 COG5208 HAP5 CCAAT-binding fac 98.1 5.5E-06 1.2E-10 67.1 5.2 76 37-113 108-183 (286)
27 smart00576 BTP Bromodomain tra 97.8 8.5E-05 1.8E-09 50.2 6.3 59 44-104 12-70 (77)
28 smart00428 H3 Histone H3. 97.8 6.2E-05 1.3E-09 54.4 5.4 70 34-103 25-99 (105)
29 PF02969 TAF: TATA box binding 97.7 0.00021 4.6E-09 47.7 6.6 64 38-103 3-66 (66)
30 PLN00158 histone H2B; Provisio 97.6 0.00032 6.9E-09 51.6 7.3 61 42-103 31-91 (116)
31 cd08050 TAF6 TATA Binding Prot 97.6 0.00021 4.6E-09 60.5 6.7 60 42-103 3-62 (343)
32 PTZ00463 histone H2B; Provisio 97.5 0.00091 2E-08 49.2 8.7 61 42-103 32-92 (117)
33 PF15511 CENP-T: Centromere ki 97.4 0.00036 7.7E-09 60.6 5.9 73 25-97 338-414 (414)
34 KOG0869 CCAAT-binding factor, 97.3 0.00065 1.4E-08 52.4 6.2 67 37-103 31-97 (168)
35 cd08048 TAF11 TATA Binding Pro 97.2 0.0016 3.5E-08 45.3 6.7 63 39-103 17-82 (85)
36 smart00427 H2B Histone H2B. 97.1 0.0018 4E-08 45.6 6.4 60 43-103 6-65 (89)
37 KOG3467 Histone H4 [Chromatin 97.0 0.0012 2.6E-08 46.7 4.6 71 29-103 22-92 (103)
38 PF04719 TAFII28: hTAFII28-lik 96.7 0.0053 1.1E-07 43.3 5.8 64 39-103 24-88 (90)
39 PLN00161 histone H3; Provision 96.7 0.016 3.5E-07 43.7 8.3 70 34-103 51-124 (135)
40 PF15630 CENP-S: Kinetochore c 96.6 0.011 2.3E-07 40.4 6.3 48 61-108 26-76 (76)
41 KOG1744 Histone H2B [Chromatin 96.5 0.023 5E-07 42.4 8.3 66 34-103 36-101 (127)
42 KOG3219 Transcription initiati 96.3 0.0053 1.2E-07 48.8 3.9 64 38-103 112-176 (195)
43 KOG0871 Class 2 transcription 96.2 0.018 4E-07 44.1 6.2 71 34-104 8-78 (156)
44 PLN00121 histone H3; Provision 96.2 0.0094 2E-07 45.0 4.6 69 35-103 59-130 (136)
45 PLN00160 histone H3; Provision 96.1 0.01 2.3E-07 42.4 4.3 69 35-103 18-90 (97)
46 PF07524 Bromo_TP: Bromodomain 95.9 0.041 9E-07 36.7 6.3 58 44-103 12-69 (77)
47 PF02291 TFIID-31kDa: Transcri 95.7 0.044 9.6E-07 40.9 6.5 62 41-104 15-76 (129)
48 PF03847 TFIID_20kDa: Transcri 95.6 0.071 1.5E-06 35.6 6.6 61 43-104 4-64 (68)
49 PTZ00018 histone H3; Provision 95.6 0.034 7.4E-07 42.0 5.6 68 36-103 60-130 (136)
50 PF09415 CENP-X: CENP-S associ 95.3 0.094 2E-06 35.4 6.3 62 40-101 1-64 (72)
51 KOG0870 DNA polymerase epsilon 93.7 0.27 5.8E-06 38.4 6.4 68 35-103 7-76 (172)
52 PF02269 TFIID-18kDa: Transcri 93.1 0.13 2.7E-06 36.1 3.4 54 58-111 20-73 (93)
53 KOG1658 DNA polymerase epsilon 93.0 0.12 2.5E-06 40.0 3.4 76 36-113 57-133 (162)
54 cd07978 TAF13 The TATA Binding 92.6 0.77 1.7E-05 32.2 6.8 62 44-107 8-69 (92)
55 KOG1745 Histones H3 and H4 [Ch 91.8 0.19 4.1E-06 38.0 3.2 67 37-103 62-131 (137)
56 KOG1142 Transcription initiati 91.0 0.33 7.1E-06 40.2 4.1 71 38-109 154-224 (258)
57 KOG3334 Transcription initiati 89.7 1.3 2.9E-05 33.8 6.1 56 44-104 19-77 (148)
58 PF02861 Clp_N: Clp amino term 82.5 1.4 3.1E-05 26.3 2.5 34 81-114 1-36 (53)
59 COG5094 TAF9 Transcription ini 79.3 9.3 0.0002 28.8 6.3 62 42-105 18-82 (145)
60 COG5150 Class 2 transcription 79.2 8.3 0.00018 29.2 6.0 68 36-104 9-77 (148)
61 PF15510 CENP-W: Centromere ki 75.7 8 0.00017 27.7 4.8 65 38-103 16-94 (102)
62 COG5251 TAF40 Transcription in 71.8 5.4 0.00012 31.5 3.5 63 39-103 116-179 (199)
63 KOG2549 Transcription initiati 71.4 17 0.00037 33.4 7.0 61 41-103 14-74 (576)
64 PF13335 Mg_chelatase_2: Magne 71.3 13 0.00029 25.9 5.2 48 56-103 41-94 (96)
65 PF08369 PCP_red: Proto-chloro 67.4 16 0.00034 22.2 4.3 32 63-101 13-44 (45)
66 PF13654 AAA_32: AAA domain; P 66.6 5.1 0.00011 36.0 2.8 31 74-104 475-505 (509)
67 COG5095 TAF6 Transcription ini 64.4 26 0.00057 30.6 6.4 62 40-103 7-68 (450)
68 COG3636 Predicted transcriptio 56.1 19 0.0004 26.0 3.5 53 61-113 22-83 (100)
69 TIGR00764 lon_rel lon-related 55.8 40 0.00087 30.9 6.5 31 75-105 361-391 (608)
70 COG4430 Uncharacterized protei 55.8 16 0.00034 29.4 3.4 46 69-114 110-158 (200)
71 KOG4336 TBP-associated transcr 53.5 73 0.0016 27.3 7.2 82 44-127 11-100 (323)
72 COG1067 LonB Predicted ATP-dep 52.4 18 0.00038 33.7 3.7 39 75-113 369-407 (647)
73 TIGR02928 orc1/cdc6 family rep 51.3 45 0.00097 27.4 5.7 46 58-103 221-272 (365)
74 PRK00411 cdc6 cell division co 50.6 67 0.0015 26.7 6.7 68 37-104 202-281 (394)
75 PLN00163 histone H4; Provision 49.9 5.7 0.00012 26.0 0.1 29 29-61 22-50 (59)
76 PF09123 DUF1931: Domain of un 48.6 13 0.00029 28.2 1.9 55 44-100 1-55 (138)
77 PRK11034 clpA ATP-dependent Cl 47.4 32 0.00069 32.5 4.6 41 74-114 6-46 (758)
78 TIGR01128 holA DNA polymerase 47.0 62 0.0013 25.6 5.7 51 57-107 130-180 (302)
79 PF12096 DUF3572: Protein of u 47.0 13 0.00028 26.1 1.6 56 42-102 22-80 (88)
80 smart00350 MCM minichromosome 43.7 71 0.0015 28.4 6.0 67 37-103 416-502 (509)
81 KOG3901 Transcription initiati 42.9 1.1E+02 0.0024 22.3 5.9 38 71-109 38-76 (109)
82 PRK05574 holA DNA polymerase I 42.4 71 0.0015 25.8 5.5 62 43-107 154-215 (340)
83 KOG1658 DNA polymerase epsilon 41.7 48 0.001 25.8 4.0 74 35-114 8-81 (162)
84 PF12767 SAGA-Tad1: Transcript 41.4 54 0.0012 26.4 4.6 42 42-85 210-251 (252)
85 TIGR02639 ClpA ATP-dependent C 40.6 45 0.00097 31.0 4.4 40 74-113 5-44 (731)
86 COG1474 CDC6 Cdc6-related prot 40.0 44 0.00095 28.7 4.0 73 36-109 184-268 (366)
87 PHA02943 hypothetical protein; 37.8 79 0.0017 24.6 4.7 41 74-114 76-116 (165)
88 TIGR00368 Mg chelatase-related 37.2 71 0.0015 28.6 5.0 47 57-103 445-497 (499)
89 PRK05629 hypothetical protein; 34.0 1E+02 0.0022 25.3 5.2 58 42-107 133-194 (318)
90 PRK09862 putative ATP-dependen 33.5 91 0.002 28.2 5.1 47 57-103 438-490 (506)
91 PRK07452 DNA polymerase III su 32.5 1.2E+02 0.0025 24.7 5.3 59 44-105 139-199 (326)
92 PF13376 OmdA: Bacteriocin-pro 32.2 45 0.00097 21.2 2.3 23 92-114 4-26 (63)
93 PF05236 TAF4: Transcription i 32.1 86 0.0019 25.4 4.4 55 32-88 37-95 (264)
94 CHL00095 clpC Clp protease ATP 30.8 67 0.0015 30.3 4.0 33 75-107 10-42 (821)
95 PRK07914 hypothetical protein; 30.4 1E+02 0.0022 25.3 4.6 60 44-107 137-196 (320)
96 TIGR02263 benz_CoA_red_C benzo 29.4 1E+02 0.0022 26.3 4.6 44 70-114 137-180 (380)
97 PRK06585 holA DNA polymerase I 29.3 1.1E+02 0.0025 25.0 4.8 62 43-107 150-212 (343)
98 COG4905 Predicted membrane pro 28.8 59 0.0013 26.4 2.8 23 62-84 70-92 (243)
99 PHA02669 hypothetical protein; 28.6 50 0.0011 26.2 2.3 17 62-78 12-28 (210)
100 PF04558 tRNA_synt_1c_R1: Glut 28.3 83 0.0018 24.1 3.5 41 62-103 83-127 (164)
101 TIGR03346 chaperone_ClpB ATP-d 27.1 1E+02 0.0022 29.4 4.5 33 74-106 5-37 (852)
102 cd08045 TAF4 TATA Binding Prot 27.1 1.8E+02 0.0039 22.8 5.3 58 29-88 35-96 (212)
103 COG1466 HolA DNA polymerase II 26.7 1.3E+02 0.0029 25.0 4.7 63 43-108 148-210 (334)
104 KOG4552 Vitamin-D-receptor int 26.2 1E+02 0.0022 25.4 3.8 52 63-114 13-65 (272)
105 PRK08487 DNA polymerase III su 26.1 1.6E+02 0.0034 24.3 5.1 57 42-107 142-202 (328)
106 TIGR03015 pepcterm_ATPase puta 25.5 1.1E+02 0.0023 23.8 3.8 46 58-103 216-264 (269)
107 PRK05907 hypothetical protein; 25.0 1.5E+02 0.0032 24.8 4.7 58 44-107 143-205 (311)
108 TIGR02442 Cob-chelat-sub cobal 24.8 1E+02 0.0023 28.2 4.1 47 57-103 249-302 (633)
109 TIGR03345 VI_ClpV1 type VI sec 24.8 1.1E+02 0.0024 29.3 4.3 33 74-106 5-37 (852)
110 PF04604 L_biotic_typeA: Type- 24.6 46 0.00099 21.2 1.2 22 104-127 16-37 (51)
111 COG5248 TAF19 Transcription in 24.2 2.8E+02 0.0061 20.5 5.4 53 57-109 24-77 (126)
112 PRK10865 protein disaggregatio 23.3 1.3E+02 0.0028 28.8 4.4 39 74-112 10-50 (857)
113 PRK12402 replication factor C 22.8 2E+02 0.0044 23.0 5.1 54 57-112 203-259 (337)
114 PTZ00361 26 proteosome regulat 22.4 1.1E+02 0.0024 27.0 3.6 29 76-104 395-423 (438)
115 CHL00095 clpC Clp protease ATP 22.2 1.2E+02 0.0026 28.7 4.0 34 74-107 84-117 (821)
116 KOG1051 Chaperone HSP104 and r 22.1 1E+02 0.0023 30.0 3.6 38 75-114 17-54 (898)
117 TIGR02030 BchI-ChlI magnesium 21.9 1.3E+02 0.0029 25.5 3.9 47 57-103 254-307 (337)
118 KOG0480 DNA replication licens 21.8 2.2E+02 0.0048 27.2 5.5 67 37-103 556-641 (764)
119 PF09077 Phage-MuB_C: Mu B tra 21.6 43 0.00094 22.9 0.7 29 74-103 48-76 (78)
120 TIGR01242 26Sp45 26S proteasom 21.5 1.2E+02 0.0027 25.3 3.6 28 76-103 334-361 (364)
121 TIGR02639 ClpA ATP-dependent C 21.5 1.1E+02 0.0024 28.4 3.6 34 74-107 82-115 (731)
122 COG0141 HisD Histidinol dehydr 21.3 98 0.0021 27.6 3.0 32 92-123 316-349 (425)
123 cd05031 S-100A10_like S-100A10 21.0 2.6E+02 0.0057 18.5 5.7 45 70-114 3-59 (94)
124 cd05029 S-100A6 S-100A6: S-100 21.0 2.7E+02 0.0059 18.7 5.7 45 70-114 5-59 (88)
125 TIGR02902 spore_lonB ATP-depen 20.3 1.4E+02 0.003 26.9 3.8 30 76-105 303-332 (531)
No 1
>PLN00154 histone H2A; Provisional
Probab=100.00 E-value=3.5e-48 Score=288.78 Aligned_cols=134 Identities=87% Similarity=1.226 Sum_probs=120.8
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCCCCcccccCcccchhhhhhhhhhccc-cccccCcchHHHHHHHHHHHHHHHHH
Q 032658 1 MAGKGGKGLLAAKTTAGNKDKDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIA-AHGRVGATAAVYLASILEYLTAEVLE 79 (136)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SsragL~fPVsrv~R~Lk~~~~-a~~RVs~~A~VyLaAvLEyL~~EILe 79 (136)
|++++|+++++++.++....+.+.+++..|+|+||||||||+||+|+|+++++ .+ ||+++|||||+||||||++||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~srS~rAgL~FPVgRi~r~Lk~g~~~~~-RVga~ApVYLAAVLEYLtAEVLE 79 (136)
T PLN00154 1 MSGKGGKGLLAAKTTAAAAKKDKDKKKPTSRSSRAGLQFPVGRIHRQLKQRVSAHG-RVGATAAVYTAAILEYLTAEVLE 79 (136)
T ss_pred CCCccccccccCCcCCcccccccCCcCCcCcccccCccCchHHHHHHHHhhhhhcc-ccccchHHHHHHHHHHHHHHHHH
Confidence 78889999888775442222334466899999999999999999999999974 44 99999999999999999999999
Q ss_pred HHHHHHHhcCCceechhhHHHHhhCChHHHhhhhccccCCCccCCcccccccccCC
Q 032658 80 LAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTK 135 (136)
Q Consensus 80 lAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~~~ia~ggv~p~i~~~~~~~~~~ 135 (136)
+|+|+|+++++++|+|+||++||+||+||++||+.||++|||+|+||++|+|++++
T Consensus 80 LAGNaA~d~kk~RItPrHi~lAIrnDeEL~~Ll~~TIa~GGVlP~i~~~l~~k~~~ 135 (136)
T PLN00154 80 LAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINKSTK 135 (136)
T ss_pred HHHHHHHhhCCceecHHHhhhhccCcHHHHHHhcCCccCCccCCCcchhhcccccC
Confidence 99999999999999999999999999999999988999999999999999999875
No 2
>PLN00157 histone H2A; Provisional
Probab=100.00 E-value=1.2e-46 Score=279.78 Aligned_cols=109 Identities=62% Similarity=0.945 Sum_probs=106.1
Q ss_pred CCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 25 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 25 ~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
+++..|+|+||||||||+||+|+|++++|+. ||+++|+|||+||||||++||||+|+|.|+++++++|+|+||++||+|
T Consensus 13 ~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~-RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~n 91 (132)
T PLN00157 13 GKKATSRSAKAGLQFPVGRIARYLKAGKYAT-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVRN 91 (132)
T ss_pred CcCCcCcccccCcccchHHHHHHHhcCchhh-hcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhcccC
Confidence 4578999999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhhhc-cccCCCccCCcccccccccC
Q 032658 105 DEELDTLIKG-TIAGGGVIPHIHKSLINKTT 134 (136)
Q Consensus 105 D~EL~~Lf~~-~ia~ggv~p~i~~~~~~~~~ 134 (136)
|+||++||++ ||++|||+|+||++|+|+++
T Consensus 92 DeEL~~Ll~~vtIa~GGV~P~i~~~ll~kk~ 122 (132)
T PLN00157 92 DEELSKLLGGVTIAAGGVLPNIHSVLLPKKS 122 (132)
T ss_pred cHHHHHHHcCceecCCccCCCcchhhcCCCC
Confidence 9999999999 99999999999999999986
No 3
>PLN00156 histone H2AX; Provisional
Probab=100.00 E-value=1.7e-46 Score=280.76 Aligned_cols=109 Identities=61% Similarity=0.947 Sum_probs=106.5
Q ss_pred CCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 25 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 25 ~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
+++.+|+|+||||||||+||+|+|++++|++ ||+++|||||+||||||++||||+|+|.|+++++++|+|+||++||+|
T Consensus 16 ~~k~~srS~rAgL~FPVgRi~R~Lk~g~ya~-RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIrn 94 (139)
T PLN00156 16 ATKSVSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRN 94 (139)
T ss_pred ccCCcCcccccCcccchHHHHHHHhcCChhh-ccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhccC
Confidence 6678999999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhhhc-cccCCCccCCcccccccccC
Q 032658 105 DEELDTLIKG-TIAGGGVIPHIHKSLINKTT 134 (136)
Q Consensus 105 D~EL~~Lf~~-~ia~ggv~p~i~~~~~~~~~ 134 (136)
|+||++||++ ||++|||+|+||++|+|++.
T Consensus 95 DeEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~ 125 (139)
T PLN00156 95 DEELSKLLGSVTIAAGGVLPNIHQTLLPKKV 125 (139)
T ss_pred cHHHHHHHCCCccCCCccCCCccHhhccccc
Confidence 9999999999 99999999999999999986
No 4
>PLN00153 histone H2A; Provisional
Probab=100.00 E-value=3.4e-46 Score=276.47 Aligned_cols=110 Identities=64% Similarity=0.943 Sum_probs=106.1
Q ss_pred CCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 25 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 25 ~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
+++..|+|+||||||||+||+|+|++++|++ ||+++|||||+||||||++||||+|+|.|+++++++|+|+||++||+|
T Consensus 11 ~~k~~srS~ragL~FpVgRi~R~Lr~g~~a~-Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~n 89 (129)
T PLN00153 11 GKKAVSRSAKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRN 89 (129)
T ss_pred ccCccCcccccCcccchHHHHHHHhcCchhh-ccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhccC
Confidence 4467999999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhhhc-cccCCCccCCcccccccccCC
Q 032658 105 DEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 135 (136)
Q Consensus 105 D~EL~~Lf~~-~ia~ggv~p~i~~~~~~~~~~ 135 (136)
|+||++||++ ||++|||+|+||++|+|++.+
T Consensus 90 DeEL~~Ll~~vTIa~GGV~P~i~~~l~~kk~~ 121 (129)
T PLN00153 90 DEELGKLLGEVTIASGGVLPNIHAVLLPKKTK 121 (129)
T ss_pred cHHHHHHHCCCccCCCccCCCcchhhcCcccC
Confidence 9999999999 999999999999999999864
No 5
>PTZ00017 histone H2A; Provisional
Probab=100.00 E-value=4.3e-46 Score=277.55 Aligned_cols=110 Identities=70% Similarity=1.052 Sum_probs=106.5
Q ss_pred CCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 25 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 25 ~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
+++..|+|+||||||||+||+|||++++|+. ||+++|||||+||||||++||||+|+|.|+++++++|+|+||++||+|
T Consensus 14 ~~k~~srS~ragL~FPVgRi~R~Lk~g~~a~-RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~n 92 (134)
T PTZ00017 14 KKKPVSRSAKAGLQFPVGRVHRYLKKGRYAK-RVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIRN 92 (134)
T ss_pred CcCcccccccCCcccchHHHHHHHhccchhc-cccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhccC
Confidence 5578999999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhhhc-cccCCCccCCcccccccccCC
Q 032658 105 DEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 135 (136)
Q Consensus 105 D~EL~~Lf~~-~ia~ggv~p~i~~~~~~~~~~ 135 (136)
|+||++||++ ||++|||+|+||++|+|++.+
T Consensus 93 DeEL~~Ll~~vtIa~GGV~P~i~~~l~~k~~~ 124 (134)
T PTZ00017 93 DEELNKLLAGVTIASGGVLPNIHKVLLPKKSK 124 (134)
T ss_pred cHHHHHHHcCCcccCCccCCCccHhhccCCCC
Confidence 9999999999 999999999999999999863
No 6
>PTZ00252 histone H2A; Provisional
Probab=100.00 E-value=8.8e-46 Score=275.16 Aligned_cols=111 Identities=48% Similarity=0.777 Sum_probs=103.8
Q ss_pred CCCCCCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHh--cCCceechhhH
Q 032658 21 KDKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKD--LKVKRITPRHL 98 (136)
Q Consensus 21 ~~~~~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~--~~~krItp~hI 98 (136)
|++.+|...++|+||||||||+||+|||++++|++ ||+++|||||+||||||++||||+|+|.|++ +++++|+|+||
T Consensus 8 ~~~~~~~~~~rS~rAGL~FPVgRi~R~Lr~g~ya~-RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi 86 (134)
T PTZ00252 8 KKKASKSGSGRSAKAGLIFPVGRVGSLLRRGQYAR-RIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTV 86 (134)
T ss_pred hhcccccccccccccCccCchHHHHHHHHcCCccc-ccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHH
Confidence 44545555559999999999999999999999997 9999999999999999999999999999976 67899999999
Q ss_pred HHHhhCChHHHhhhhc-cccCCCccCCcccccccc
Q 032658 99 QLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINK 132 (136)
Q Consensus 99 ~~AI~nD~EL~~Lf~~-~ia~ggv~p~i~~~~~~~ 132 (136)
++||+||+||++||++ ||++|||+|+||++|+|+
T Consensus 87 ~lAIrNDeEL~~Ll~~vTIa~GGVlP~i~~~l~~k 121 (134)
T PTZ00252 87 TLAVRHDDDLGSLLKNVTLSRGGVMPSLNKALAKK 121 (134)
T ss_pred HhhccChHHHHHHHcCCccCCCccCCCccHhhccc
Confidence 9999999999999999 999999999999999998
No 7
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=100.00 E-value=1.9e-44 Score=263.28 Aligned_cols=110 Identities=70% Similarity=1.016 Sum_probs=105.2
Q ss_pred CCCCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHh
Q 032658 23 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 102 (136)
Q Consensus 23 ~~~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI 102 (136)
|.+++.+|+|+|+||+|||+||+|||+++.|++ ||+++|+|||+||||||++||+|+|+|.|+++++++|+|+||++||
T Consensus 5 k~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~-RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi 83 (115)
T cd00074 5 KKKSKKRSRSARAGLQFPVGRIHRYLKKGRYAE-RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAV 83 (115)
T ss_pred ccCcCccccccccCccCcHHHHHHHHHcCcccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHH
Confidence 345677799999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred hCChHHHhhhhc-cccCCCccCCccccccccc
Q 032658 103 RGDEELDTLIKG-TIAGGGVIPHIHKSLINKT 133 (136)
Q Consensus 103 ~nD~EL~~Lf~~-~ia~ggv~p~i~~~~~~~~ 133 (136)
+||+||++||++ ||++|||+|+||++|+|++
T Consensus 84 ~nD~EL~~L~~~vtI~~ggv~p~i~~~l~~~~ 115 (115)
T cd00074 84 RNDEELNKLLKGVTIASGGVLPNIHKVLLPKK 115 (115)
T ss_pred hccHHHHHHHcCCcccCCccCCCcchhhcCCC
Confidence 999999999999 9999999999999999875
No 8
>KOG1756 consensus Histone 2A [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-44 Score=266.35 Aligned_cols=116 Identities=64% Similarity=0.899 Sum_probs=108.9
Q ss_pred CCCCCCC-CCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechh
Q 032658 18 NKDKDKD-KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPR 96 (136)
Q Consensus 18 ~~~~~~~-~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~ 96 (136)
+.++.++ ++...|+|.|+||||||++|+|+|++++|++ ||+.+|||||+||||||++||+|+|+|+|+++++.+|+|+
T Consensus 6 k~gk~~~~~~~~~srs~~agl~fPvgri~r~Lr~~~~~~-ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~Pr 84 (131)
T KOG1756|consen 6 KGGKAKPRAKAKSSRSSRAGLQFPVGRIHRLLRKGRYAQ-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPR 84 (131)
T ss_pred CCCcccchhhhhcchhhhcccccCHHHHHHHHHccchhh-hccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChH
Confidence 3334433 4778899999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred hHHHHhhCChHHHhhhhc-cccCCCccCCcccccccccC
Q 032658 97 HLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTT 134 (136)
Q Consensus 97 hI~~AI~nD~EL~~Lf~~-~ia~ggv~p~i~~~~~~~~~ 134 (136)
||++||+||+||++|+++ ||++|||+|+||+.||||++
T Consensus 85 H~~lAI~NDeEL~~lL~~vtIa~GGvlPnI~~~lLpKk~ 123 (131)
T KOG1756|consen 85 HLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAILLPKKT 123 (131)
T ss_pred HHHHHHhCcHHHHHHhccceeccCCcccccchhhccccc
Confidence 999999999999999999 99999999999999999886
No 9
>smart00414 H2A Histone 2A.
Probab=100.00 E-value=2.2e-44 Score=259.65 Aligned_cols=104 Identities=72% Similarity=1.064 Sum_probs=101.6
Q ss_pred CcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHH
Q 032658 30 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD 109 (136)
Q Consensus 30 s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~ 109 (136)
|+|+||||||||+||+|||++++|+. ||+++|+|||+||||||++||||+|+|+|+++++++|+|+||++||+||+|||
T Consensus 1 srS~ragL~fPVgRi~r~Lk~~~~~~-Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~nD~EL~ 79 (106)
T smart00414 1 SRSARAGLQFPVGRIHRLLRKGTYAK-RVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIRNDEELN 79 (106)
T ss_pred CccccCCccCchHHHHHHHHcCcccc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhccCCHHHH
Confidence 68999999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc-cccCCCccCCcccccccccC
Q 032658 110 TLIKG-TIAGGGVIPHIHKSLINKTT 134 (136)
Q Consensus 110 ~Lf~~-~ia~ggv~p~i~~~~~~~~~ 134 (136)
+||++ ||++|||+|+||++|+|++.
T Consensus 80 ~L~~~vti~~ggv~p~i~~~l~~~~~ 105 (106)
T smart00414 80 KLLKGVTIAQGGVLPNIHKVLLPKKT 105 (106)
T ss_pred HHHcCcccCCCccCCCcchhhcccCC
Confidence 99999 99999999999999999874
No 10
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-42 Score=253.65 Aligned_cols=112 Identities=58% Similarity=0.882 Sum_probs=106.8
Q ss_pred CCCCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHh
Q 032658 23 KDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 102 (136)
Q Consensus 23 ~~~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI 102 (136)
-.-+...|+|.++||+|||+||+|+|+.++|.. ||+++|+||++||||||++||+|+|+|+|+++++++|+|+||++||
T Consensus 11 a~~r~~~s~sa~agl~fpvgrvkr~lk~~~~~~-Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlAI 89 (132)
T COG5262 11 ADARVSQSRSAKAGLIFPVGRVKRLLKKGNYRM-RIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLAI 89 (132)
T ss_pred ccchhccchhhhcCccccHHHHHHHHHcCccce-eecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHHh
Confidence 335667899999999999999999999999975 9999999999999999999999999999999999999999999999
Q ss_pred hCChHHHhhhhc-cccCCCccCCcccccccccCC
Q 032658 103 RGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 135 (136)
Q Consensus 103 ~nD~EL~~Lf~~-~ia~ggv~p~i~~~~~~~~~~ 135 (136)
+||+||++|+++ ||++|||+|+||+.|++++++
T Consensus 90 rnD~EL~~l~~~~tIa~GGvlp~I~~~ll~k~sk 123 (132)
T COG5262 90 RNDEELNKLLGDVTIAQGGVLPNINPGLLPKSSK 123 (132)
T ss_pred cCcHHHHHHhhhheeecCCcccccChhhhhhhhc
Confidence 999999999999 999999999999999999875
No 11
>KOG1757 consensus Histone 2A [Chromatin structure and dynamics]
Probab=100.00 E-value=2.8e-38 Score=229.22 Aligned_cols=111 Identities=86% Similarity=1.240 Sum_probs=107.2
Q ss_pred CCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 25 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 25 ~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
+.+.+|+|.|+||||||+||+|.|+....+..||++.+.||++++||||++|+||+|+|.+++-+-+||||+|+++||+-
T Consensus 17 ~~k~vs~s~raGlqFpVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLAiRG 96 (131)
T KOG1757|consen 17 KAKAVSRSARAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 96 (131)
T ss_pred hhhhhhHHHhcccccchHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeeeccchhheeeecC
Confidence 67899999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhhhccccCCCccCCcccccccccCC
Q 032658 105 DEELDTLIKGTIAGGGVIPHIHKSLINKTTK 135 (136)
Q Consensus 105 D~EL~~Lf~~~ia~ggv~p~i~~~~~~~~~~ 135 (136)
|+||+.|.+.||+.|||+||||..|+.|..+
T Consensus 97 DeELDtLIk~TiagGgViPhihk~l~~k~~~ 127 (131)
T KOG1757|consen 97 DEELDTLIKATIAGGGVIPHIHKSLINKKGK 127 (131)
T ss_pred cHHHHHHHHHhhccCccccchHHHHhccccc
Confidence 9999999999999999999999999998865
No 12
>PLN00155 histone H2A; Provisional
Probab=99.82 E-value=1.1e-20 Score=122.80 Aligned_cols=48 Identities=60% Similarity=0.937 Sum_probs=45.4
Q ss_pred CCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHH
Q 032658 25 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYL 73 (136)
Q Consensus 25 ~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL 73 (136)
+++.+|+|+||||||||+||+|+|++++|++ ||+++|||||+||||||
T Consensus 11 ~~k~~srS~rAgL~FPVgri~r~Lr~g~~a~-Rvga~apVYlAAVLEYL 58 (58)
T PLN00155 11 GKKAVSRSAKAGLQFPVGRIARYLKKGKYAE-RIGAGAPVYLAAVLEYL 58 (58)
T ss_pred ccCccCcccccccccchHHHHHHHhcCChhh-cccCCcHHHHHHHHHhC
Confidence 3467899999999999999999999999998 99999999999999997
No 13
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.61 E-value=1.4e-15 Score=101.52 Aligned_cols=74 Identities=43% Similarity=0.614 Sum_probs=68.5
Q ss_pred ccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCC
Q 032658 32 SSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 105 (136)
Q Consensus 32 SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD 105 (136)
+.+..+.||+.++.|-+....+..+||++.|.+||.+++||++.+|++.|++.|.++++++|+|+||+.|++.|
T Consensus 2 ~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 2 TRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp HSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred cccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 45678899999999999998765469999999999999999999999999999999999999999999999875
No 14
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=99.40 E-value=5.3e-13 Score=95.74 Aligned_cols=80 Identities=25% Similarity=0.427 Sum_probs=74.3
Q ss_pred ccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhh
Q 032658 34 RAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 113 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~ 113 (136)
+-...||++|++++|+-+... ++|+..+||.....||+|+.+|+.+++.+|+..+.+|||.+||..|+.+|+.|++|-.
T Consensus 19 ~~ktrFP~ar~KkIMQ~deDi-GKV~q~tPVIaskalE~Fl~~iv~~s~k~aR~~~skR~t~e~lk~a~~sdekFdFL~~ 97 (113)
T COG5247 19 KKKTRFPIARLKKIMQLDEDI-GKVGQSTPVIASKALEMFLTEIVGLSLKEARKKSSKRMTSEFLKRATESDEKFDFLKN 97 (113)
T ss_pred hhhhcCCHHHHHHHHHhhhhh-hhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhhhHHHHHHHH
Confidence 344569999999999999886 5999999999999999999999999999999999999999999999999999998865
Q ss_pred c
Q 032658 114 G 114 (136)
Q Consensus 114 ~ 114 (136)
.
T Consensus 98 ~ 98 (113)
T COG5247 98 M 98 (113)
T ss_pred H
Confidence 4
No 15
>PLN00035 histone H4; Provisional
Probab=99.15 E-value=6.2e-11 Score=85.32 Aligned_cols=71 Identities=15% Similarity=0.181 Sum_probs=64.5
Q ss_pred CCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 29 ISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 29 ~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
..+-+-++ +|...|.|+++.++ ++ |||.++-..|..+||.++.+|+..|...|.|+++++|+.+||.+|++
T Consensus 22 ~~~d~i~~--ipk~~IrRLARr~G-vk-RIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alk 92 (103)
T PLN00035 22 VLRDNIQG--ITKPAIRRLARRGG-VK-RISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALK 92 (103)
T ss_pred HHHhhhcc--CCHHHHHHHHHHcC-cc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 44444555 88889999999998 56 99999999999999999999999999999999999999999999986
No 16
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=99.15 E-value=1.8e-10 Score=75.35 Aligned_cols=64 Identities=25% Similarity=0.259 Sum_probs=57.2
Q ss_pred ccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHh
Q 032658 38 QFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 102 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI 102 (136)
.||+++|+|+|+...... +|+.+|...++.+.|.|+.+|...|...|...++++|+++||..|+
T Consensus 2 ~lP~a~vkri~k~~~~~~-~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 2 SLPLARVKRIMKSDPDVM-RVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp SS-HHHHHHHHHHTSTTS-EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CCChHHHHHHhccCCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 599999999999995544 8999999999999999999999999999999999999999999886
No 17
>KOG1659 consensus Class 2 transcription repressor NC2, alpha subunit (DRAP1) [Transcription]
Probab=99.13 E-value=9.6e-11 Score=93.45 Aligned_cols=78 Identities=23% Similarity=0.392 Sum_probs=73.1
Q ss_pred cCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhh
Q 032658 35 AGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 113 (136)
Q Consensus 35 agL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~ 113 (136)
-.-.||++||+++||.+... ++|....||.+...||.|+.+|+..++.+++..+.|+++++||+.||.+|+.|++|-.
T Consensus 10 ~~trfp~aRiKKIMQ~dEdI-GKvaqavPViisralElFl~~l~~~t~~~t~~~~aKt~s~~hlkq~v~~~~~FdFLk~ 87 (224)
T KOG1659|consen 10 YKTRFPPARIKKIMQSDEDI-GKVAQAVPVIISRALELFLESLLQKTLEITRSRGAKTVSSSHLKQAVESDPKFDFLKE 87 (224)
T ss_pred hhccCCHHHHHHHHhhhhhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCccccCHHHHHHHHhccchhHHHHH
Confidence 34459999999999999986 5999999999999999999999999999999999999999999999999999999865
No 18
>PTZ00015 histone H4; Provisional
Probab=99.04 E-value=5.8e-10 Score=80.19 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=62.1
Q ss_pred cccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 31 RSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 31 ~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
+.+-.| +|...|.|+++.++. + |||+++-..+..+||.++.+|+..|...|.|+++++|+.+||.+|++
T Consensus 25 r~~i~g--I~k~~IrRLarr~Gv-k-RIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlK 93 (102)
T PTZ00015 25 RDNIRG--ITKGAIRRLARRGGV-K-RISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALK 93 (102)
T ss_pred hhcccC--CCHHHHHHHHHHcCC-c-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 343445 667789999999984 6 99999999999999999999999999999999999999999999986
No 19
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=99.04 E-value=4.4e-10 Score=79.33 Aligned_cols=68 Identities=25% Similarity=0.320 Sum_probs=63.6
Q ss_pred ccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 34 RAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
...+-+|+..|.|+|++... + |||++|...|..++|-++.+|.+.|...|.|.++++|+++||++|+.
T Consensus 15 ~~~~~Lp~apv~Ri~r~~~~-~-Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~ 82 (91)
T COG2036 15 STDLLLPKAPVRRILRKAGA-E-RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALK 82 (91)
T ss_pred hhhhhcCchHHHHHHHHHhH-H-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 34567999999999999984 6 99999999999999999999999999999999999999999999986
No 20
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=99.01 E-value=1.5e-09 Score=72.02 Aligned_cols=64 Identities=23% Similarity=0.208 Sum_probs=60.6
Q ss_pred ccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 38 QFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.+|...|.|+.+..+. . |||.++...|+..+||.+.+|++.|.+.++|++|++++++||..|++
T Consensus 2 ~~p~~~i~ria~~~Gi-~-ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 2 WLPKETIKDVAESLGI-G-NLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred CCCHHHHHHHHHHCCC-c-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 4899999999999985 6 99999999999999999999999999999999999999999999874
No 21
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=98.85 E-value=9.6e-09 Score=71.66 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=62.5
Q ss_pred ccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 32 SSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 32 SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
.+-+| +|...|.|+.+.++ +. |||.++-..+..+||.+..+|+..|...|.|+++++|+++||.+|++.
T Consensus 9 ~~~~g--i~k~~I~RLarr~G-vk-RIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr 77 (85)
T cd00076 9 DNIKG--ITKPAIRRLARRGG-VK-RISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKR 77 (85)
T ss_pred Hhhcc--CCHHHHHHHHHHcC-cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHH
Confidence 33445 77888999999998 46 999999999999999999999999999999999999999999999863
No 22
>smart00417 H4 Histone H4.
Probab=98.80 E-value=1.1e-08 Score=69.77 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=57.0
Q ss_pred cchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHH
Q 032658 39 FPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLA 101 (136)
Q Consensus 39 fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~A 101 (136)
+|...|.|+++.++ ++ |||.++-..+..+||.+..+|+..|...|.+.++++|+.+||..|
T Consensus 14 I~k~~IrRLaRr~G-vk-RIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~a 74 (74)
T smart00417 14 ITKPAIRRLARRGG-VK-RISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYA 74 (74)
T ss_pred CCHHHHHHHHHHcC-cc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHheeC
Confidence 67778999999998 47 999999999999999999999999999999999999999999754
No 23
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=98.22 E-value=5.7e-06 Score=55.57 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=57.1
Q ss_pred chhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCC
Q 032658 40 PVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 105 (136)
Q Consensus 40 PVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD 105 (136)
+-..+..++++-.... |++.+|...|..++|-++.++++.|...|+|.++++|.++||+++++.+
T Consensus 3 ~k~~l~~lv~~id~~~-~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r~ 67 (72)
T cd07981 3 TKRKLQELLKEIDPRE-QLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLERN 67 (72)
T ss_pred cHHHHHHHHHhhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 4455667777765444 9999999999999999999999999999999999999999999999764
No 24
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=98.17 E-value=6e-06 Score=60.41 Aligned_cols=61 Identities=23% Similarity=0.113 Sum_probs=56.7
Q ss_pred hhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 42 GRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 42 srv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
--|+++|++.+. . +++..++..|...++-++.+|+..|...|+|.++++|+.+||++||+.
T Consensus 5 ~~v~~iLk~~Gv-~-~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~ 65 (117)
T cd07979 5 RVIAAILKSMGI-T-EYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQS 65 (117)
T ss_pred HHHHHHHHHCCC-C-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 358899999874 5 899999999999999999999999999999999999999999999974
No 25
>KOG1657 consensus CCAAT-binding factor, subunit C (HAP5) [Transcription]
Probab=98.16 E-value=1.9e-06 Score=69.99 Aligned_cols=80 Identities=20% Similarity=0.207 Sum_probs=74.7
Q ss_pred ccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhh
Q 032658 34 RAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 113 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~ 113 (136)
-....||++||+++||.+.... -|+.+|||.++.++|+++.|+-..++..+..++++.+.-.||..++.+.+-+++|..
T Consensus 70 ~~~~~lPlaRiKkimK~dedv~-mI~~Eapvl~aka~E~Fi~elt~~sw~~Tee~~rrtl~~sdia~av~~s~~fdFL~D 148 (236)
T KOG1657|consen 70 FKNHILPLARIKKIMKSDEDVS-MITAEAPVLFAKACELFITELTLRSWVHTEENKRRTLQKSDIAAAVTQSETFDFLRD 148 (236)
T ss_pred hhhccCcHhhcccccccccccc-ccchhHHHHHHHHHHHHHHHHHHHhhhhhcccccccchHHHHHHHhccCCCccceec
Confidence 3456799999999999999887 899999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 032658 114 G 114 (136)
Q Consensus 114 ~ 114 (136)
.
T Consensus 149 i 149 (236)
T KOG1657|consen 149 I 149 (236)
T ss_pred c
Confidence 4
No 26
>COG5208 HAP5 CCAAT-binding factor, subunit C [Transcription]
Probab=98.09 E-value=5.5e-06 Score=67.13 Aligned_cols=76 Identities=24% Similarity=0.326 Sum_probs=71.2
Q ss_pred cccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhh
Q 032658 37 IQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 113 (136)
Q Consensus 37 L~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~ 113 (136)
+.+|++||+++|+.+...+ =|++.|||.++..-|-|++|+.-.|+-.|..+++.++.-.||..|++..+-+++|..
T Consensus 108 h~LPlARIkkvMKtdedVk-MisaEaPvlFak~~EiFI~ELTmRAW~~ae~NkRRtLQksDia~Av~kSeMfDFLid 183 (286)
T COG5208 108 HNLPLARIKKVMKTDEDVK-MISAEAPVLFAKITEIFIEELTMRAWINAEENKRRTLQKSDIAAAVKKSEMFDFLID 183 (286)
T ss_pred ccCcHHHHHHHHhcccchh-heecccchHHHHHHHHHHHHHHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHhHHhh
Confidence 4599999999999998877 699999999999999999999999999999999999999999999999999998883
No 27
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=97.80 E-value=8.5e-05 Score=50.22 Aligned_cols=59 Identities=17% Similarity=0.067 Sum_probs=54.6
Q ss_pred hhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 44 IHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 44 v~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
|.++++..++ + +++.+|...|+.++|-++.+|.+.+-+.|.+.+|+..++.||.+|+.+
T Consensus 12 Vaqil~~~Gf-~-~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~ 70 (77)
T smart00576 12 VAQILESAGF-D-SFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALEN 70 (77)
T ss_pred HHHHHHHcCc-c-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5678899886 5 999999999999999999999999999999999999999999999863
No 28
>smart00428 H3 Histone H3.
Probab=97.76 E-value=6.2e-05 Score=54.44 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=59.5
Q ss_pred ccCcccchhhhhhhhhhccc---c--ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 34 RAGIQFPVGRIHRHLKSRIA---A--HGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~~---a--~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
-.+|.+|-.++.|+.++-.. . .+|++++|...|..+.|.++.++++.|...|.|.++.+|+|+||++|.+
T Consensus 25 st~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~r 99 (105)
T smart00428 25 STDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARR 99 (105)
T ss_pred CcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHH
Confidence 34677888888888765321 0 3599999999999999999999999999999999999999999999864
No 29
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=97.68 E-value=0.00021 Score=47.67 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=51.1
Q ss_pred ccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 38 QFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.||..-|+.+-..-+.. .++.++.-.|+.=+||-+.||++.|.+..++.+|++++++||+.|++
T Consensus 3 ~~~~esvk~iAes~Gi~--~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 3 VFSQESVKDIAESLGIS--NLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp ---HHHHHHHHHHTT-----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred cCCHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 57888888888887763 69999999999999999999999999999999999999999999874
No 30
>PLN00158 histone H2B; Provisional
Probab=97.61 E-value=0.00032 Score=51.60 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=55.8
Q ss_pred hhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 42 GRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 42 srv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
..|+|.|++-.... -||+.|.-.|...+..++..|...|...++.+++.+|++++|+.|++
T Consensus 31 ~YI~kVLKQVhPd~-gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvr 91 (116)
T PLN00158 31 IYIYKVLKQVHPDT-GISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVR 91 (116)
T ss_pred HHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 46999999987654 89999999999999999999999999999999999999999999997
No 31
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=97.57 E-value=0.00021 Score=60.45 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=54.2
Q ss_pred hhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 42 GRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 42 srv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.-|+-+.+..+ +. |++.+|...|+..+||.+.+|++.|.+.+++++|++++++||+.|++
T Consensus 3 ~~i~~ia~~~G-i~-~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~ 62 (343)
T cd08050 3 ESIKLIAESLG-ID-SLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALR 62 (343)
T ss_pred hHHHHHHHHcC-CC-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence 44666666666 45 99999999999999999999999999999999999999999999987
No 32
>PTZ00463 histone H2B; Provisional
Probab=97.52 E-value=0.00091 Score=49.23 Aligned_cols=61 Identities=20% Similarity=0.164 Sum_probs=55.6
Q ss_pred hhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 42 GRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 42 srv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
-.|++.|++-.... -||+.|.-.|...+..++..|...|...|+.+++.+|++++|+.|++
T Consensus 32 ~YI~KVLKqVhPd~-gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvr 92 (117)
T PTZ00463 32 LYIFKVLKQVHPDT-GISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIR 92 (117)
T ss_pred HHHHHHHHhhCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 36999999987654 89999999999999999999999999999999999999999999997
No 33
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=97.38 E-value=0.00036 Score=60.64 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=46.4
Q ss_pred CCCCCCcccccCcccchhhhhhhhhhc----cccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhh
Q 032658 25 KKRPISRSSRAGIQFPVGRIHRHLKSR----IAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRH 97 (136)
Q Consensus 25 ~~~~~s~SsragL~fPVsrv~R~Lk~~----~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~h 97 (136)
++++.|+-.-....+|.+.|++++..- .|++.+|+.+|.-.|..++|||...|-+.-..+|.|+|||+|.++|
T Consensus 338 k~~k~Skhgi~~P~lP~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 338 KQKKVSKHGIPYPSLPPGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp --------------S-HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred cccCCCCCCCCCCCCCccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 667777777888889999999988554 6677899999999999999999999999999999999999999876
No 34
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=97.33 E-value=0.00065 Score=52.44 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=60.5
Q ss_pred cccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 37 IQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 37 L~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
-.+|++-|-|+|++.-.+..+|+.+|-.-+--++--|++.|.-.|-..+...+||+|+.+||-||+.
T Consensus 31 r~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~ 97 (168)
T KOG0869|consen 31 RFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMS 97 (168)
T ss_pred hhccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHH
Confidence 3589999999999998887899999999988888888888888888888889999999999999986
No 35
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=97.22 E-value=0.0016 Score=45.30 Aligned_cols=63 Identities=27% Similarity=0.447 Sum_probs=55.2
Q ss_pred cchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceechhhHHHHhh
Q 032658 39 FPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLK---VKRITPRHLQLAIR 103 (136)
Q Consensus 39 fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~---~krItp~hI~~AI~ 103 (136)
||-..++|++..-.. + .++.+..+.|+++---++.||+|.|...-...+ ...|.|+||+.|.+
T Consensus 17 f~k~~iKr~~~~~~~-~-~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~HireA~r 82 (85)
T cd08048 17 FPKAAIKRLIQSVTG-Q-SVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPRHLREAYR 82 (85)
T ss_pred ccHHHHHHHHHHHcC-C-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcHHHHHHHH
Confidence 788889999998764 5 899999999999999999999999988766544 47899999999975
No 36
>smart00427 H2B Histone H2B.
Probab=97.15 E-value=0.0018 Score=45.58 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=55.1
Q ss_pred hhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 43 RIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 43 rv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.|+|.|++-.... -|++.|.-.|...+..++..|...|...++.+++++|++++|+.|++
T Consensus 6 Yi~kvLKqVhpd~-giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvr 65 (89)
T smart00427 6 YIYKVLKQVHPDT-GISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVR 65 (89)
T ss_pred HHHHHHHHhCCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHH
Confidence 5889999987654 89999999999999999999999999999999999999999999997
No 37
>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]
Probab=97.04 E-value=0.0012 Score=46.65 Aligned_cols=71 Identities=20% Similarity=0.234 Sum_probs=61.1
Q ss_pred CCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 29 ISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 29 ~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.-+.+-.|++-|. |.|+-+.++. . ||+...-.....|+.-++.+++-.|...+.+.++++||.-||-.++.
T Consensus 22 ~LsDnIqgitKpa--IRRlARr~GV-k-Ri~G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LK 92 (103)
T KOG3467|consen 22 VLRDNIQGITKPA--IRRLARRGGV-K-RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK 92 (103)
T ss_pred HHHhhccccchHH--HHHHHHhcCc-c-hhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHH
Confidence 4445566777887 8899999986 5 99998888889999999999999999999999999999999987764
No 38
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=96.72 E-value=0.0053 Score=43.26 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=46.7
Q ss_pred cchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHH-hcCCceechhhHHHHhh
Q 032658 39 FPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASK-DLKVKRITPRHLQLAIR 103 (136)
Q Consensus 39 fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~-~~~~krItp~hI~~AI~ 103 (136)
||-+.|++++..-...+ -|+....+.++++--.|+.||+|.|..... +.....|.|.||+.|.+
T Consensus 24 ~~k~~ikkli~~~~~~q-sv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P~hlreA~r 88 (90)
T PF04719_consen 24 FNKAAIKKLINQVLGNQ-SVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQPDHLREAYR 88 (90)
T ss_dssp --HHHHHHHHHHHHS-S----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--HHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 88889999999865324 799999999999999999999999988654 44455899999999864
No 39
>PLN00161 histone H3; Provisional
Probab=96.65 E-value=0.016 Score=43.66 Aligned_cols=70 Identities=20% Similarity=0.126 Sum_probs=59.4
Q ss_pred ccCcccchhhhhhhhhhcc----ccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 34 RAGIQFPVGRIHRHLKSRI----AAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~----~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
-.+|.+|-..+.|+.++-. ...+|+.++|...|--+-|.++..++|.+.-.|.|.++-+|.|.||+++.+
T Consensus 51 st~lLIpklPF~RLVREI~~~~~~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~r 124 (135)
T PLN00161 51 STELLIRKLPFARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARR 124 (135)
T ss_pred ccccccccccHHHHHHHHHHhcCCCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHH
Confidence 3567788888888876642 113699999999999999999999999999999999999999999999865
No 40
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=96.56 E-value=0.011 Score=40.44 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=37.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH---HHHhcCCceechhhHHHHhhCChHH
Q 032658 61 TAAVYLASILEYLTAEVLELAGN---ASKDLKVKRITPRHLQLAIRGDEEL 108 (136)
Q Consensus 61 ~A~VyLaAvLEyL~~EILelAg~---~A~~~~~krItp~hI~~AI~nD~EL 108 (136)
-+|-|++++.|-....+-.++.. .|+|.||++|+++|+.+..+.++.|
T Consensus 26 ~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~Rrn~~L 76 (76)
T PF15630_consen 26 VSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLARRNPSL 76 (76)
T ss_dssp E-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTTT-HHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhhcCCCC
Confidence 47888899888888888777744 5899999999999999999999876
No 41
>KOG1744 consensus Histone H2B [Chromatin structure and dynamics]
Probab=96.51 E-value=0.023 Score=42.42 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=53.0
Q ss_pred ccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 34 RAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.....++| .|.|++--..- -|+..|.-.+.+.+..+...|+..|+..|+-+++.+|+.++|+.|++
T Consensus 36 ~e~~s~yv---~kvlk~Vhpd~-gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~r 101 (127)
T KOG1744|consen 36 KESYSEYV---YKVLKQVHPDL-GISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVR 101 (127)
T ss_pred cCceeeeh---hhhhhcccCCC-CcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHH
Confidence 33444554 44666655443 48888888899999899999999999999999999999999999986
No 42
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=96.27 E-value=0.0053 Score=48.79 Aligned_cols=64 Identities=25% Similarity=0.360 Sum_probs=55.4
Q ss_pred ccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHH-hcCCceechhhHHHHhh
Q 032658 38 QFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASK-DLKVKRITPRHLQLAIR 103 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~-~~~~krItp~hI~~AI~ 103 (136)
.||-+.|+++|..-.. + -|+..+.++++++-.-|+.||+|+|..... +.....+.|.||+.|++
T Consensus 112 ~f~Ka~iKkL~~~itg-~-~v~~nv~Ia~~GiaKvFVGEvVEeAl~V~~~~~e~~PLqP~HIREA~r 176 (195)
T KOG3219|consen 112 AFPKAQIKKLMSSITG-Q-SVSENVAIAMAGIAKVFVGEVVEEALDVREEWGESGPLQPKHIREAYR 176 (195)
T ss_pred cCCHHHHHHHHHHHhC-C-ccCcceeeeecchhhHhHHHHHHHHHHHHHHhccCCCCCcHHHHHHHH
Confidence 4999999999999774 3 599999999999999999999999988654 34466799999999985
No 43
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=96.18 E-value=0.018 Score=44.12 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=58.9
Q ss_pred ccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 34 RAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
.-.+.+|-.-|..++++.-....||..+|--.+-.+-=+|+.-|--.|...|....+++|.|+||..|+.|
T Consensus 8 dde~sLPkAtv~KmIke~lP~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~ 78 (156)
T KOG0871|consen 8 DDELSLPKATVNKMIKEMLPKDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALEN 78 (156)
T ss_pred cccccCcHHHHHHHHHHhCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHH
Confidence 34788999999999999876456999988877766666666777778888888899999999999999874
No 44
>PLN00121 histone H3; Provisional
Probab=96.16 E-value=0.0094 Score=44.99 Aligned_cols=69 Identities=19% Similarity=0.169 Sum_probs=59.1
Q ss_pred cCcccchhhhhhhhhhccc---cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 35 AGIQFPVGRIHRHLKSRIA---AHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 35 agL~fPVsrv~R~Lk~~~~---a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.+|.+|-..+.|+.++-.. ..+|+..+|...|--+-|.++..++|.+.-.|.|.++-+|.++||+++.+
T Consensus 59 t~lLI~k~pF~RLVREI~~~~~~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~r 130 (136)
T PLN00121 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_pred cccccccccHHHHHHHHHHHhCccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHH
Confidence 3677888888888766431 13699999999999999999999999999999999999999999999854
No 45
>PLN00160 histone H3; Provisional
Probab=96.09 E-value=0.01 Score=42.36 Aligned_cols=69 Identities=19% Similarity=0.106 Sum_probs=58.8
Q ss_pred cCcccchhhhhhhhhhccc----cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 35 AGIQFPVGRIHRHLKSRIA----AHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 35 agL~fPVsrv~R~Lk~~~~----a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.+|.+|-.++.|+.++-.. ..+|+.++|...|--+-|.++-.++|.+...|.|.++-+|.|+|++++.+
T Consensus 18 t~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~r 90 (97)
T PLN00160 18 TDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARR 90 (97)
T ss_pred hhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHH
Confidence 4677888888888766421 12699999999999999999999999999999999999999999999864
No 46
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=95.87 E-value=0.041 Score=36.72 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=52.6
Q ss_pred hhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 44 IHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 44 v~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
|..+++..++ . .++.+|.--|+.+++.++.+|...+-..|.+.+|...++.||.+|+.
T Consensus 12 va~il~~~GF-~-~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~ 69 (77)
T PF07524_consen 12 VAQILKHAGF-D-SASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALE 69 (77)
T ss_pred HHHHHHHcCc-c-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4567788887 4 79999999999999999999999999999999999999999999875
No 47
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=95.72 E-value=0.044 Score=40.88 Aligned_cols=62 Identities=24% Similarity=0.151 Sum_probs=43.0
Q ss_pred hhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 41 VGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 41 Vsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
+--|+-+|++.+.. ......+.-|--..--++.+||+.|-..|.+.+++.|+.+||++||..
T Consensus 15 a~~i~~iL~~~Gv~--~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~ 76 (129)
T PF02291_consen 15 ARVIHLILKSMGVT--EYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQS 76 (129)
T ss_dssp HHHHHHHHHHTT-----B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCc--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHH
Confidence 34577888888742 233334444444444478999999999999999999999999999983
No 48
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=95.64 E-value=0.071 Score=35.57 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=47.2
Q ss_pred hhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 43 RIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 43 rv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
++..++++-... ..+..++...|..+.+-|+..++..|+..|++.+..++.++||+..++.
T Consensus 4 ~l~~Lv~~iDp~-~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler 64 (68)
T PF03847_consen 4 KLQELVKQIDPN-EKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLER 64 (68)
T ss_dssp HHHHHHHCC-SS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHH
T ss_pred HHHHHHHHcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHh
Confidence 455666665443 4899999999999999999999999999999999999999999998764
No 49
>PTZ00018 histone H3; Provisional
Probab=95.63 E-value=0.034 Score=41.99 Aligned_cols=68 Identities=19% Similarity=0.169 Sum_probs=58.9
Q ss_pred Ccccchhhhhhhhhhccc---cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 36 GIQFPVGRIHRHLKSRIA---AHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 36 gL~fPVsrv~R~Lk~~~~---a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
+|.||-..+.|+.++-.. ..+|+..+|...|--+-|.++..++|.+...|.|.++-+|.|+||+++.+
T Consensus 60 ~lLI~k~pF~RLVREI~~~~~~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~r 130 (136)
T PTZ00018 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_pred hhccccccHHHHHHHHHHHcCCcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHH
Confidence 677888888888876421 13699999999999999999999999999999999999999999999854
No 50
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=95.28 E-value=0.094 Score=35.39 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=47.4
Q ss_pred chhhhhhhhhhccc-cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCce-echhhHHHH
Q 032658 40 PVGRIHRHLKSRIA-AHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKR-ITPRHLQLA 101 (136)
Q Consensus 40 PVsrv~R~Lk~~~~-a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~kr-Itp~hI~~A 101 (136)
|..-|.|+|+...- ..-||+.+|..-++..|+-|+.|-+-+|...|...+... |..+||+..
T Consensus 1 p~~li~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki 64 (72)
T PF09415_consen 1 PPELIARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKI 64 (72)
T ss_dssp -CHHHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 44556777764221 125999999999999999999999999999999999888 999999874
No 51
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Probab=93.73 E-value=0.27 Score=38.38 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=56.6
Q ss_pred cCcccchhhhhhhhhhccccc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 35 AGIQFPVGRIHRHLKSRIAAH--GRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 35 agL~fPVsrv~R~Lk~~~~a~--~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
..|-||.+-|.|++++.-. + .-|+..|...|+-.---|+..+.-.|...|+.+++++|++.||-.|+.
T Consensus 7 ~dl~lP~AiI~rlvke~l~-E~~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~ 76 (172)
T KOG0870|consen 7 EDLNLPNAIITRLVKEVLP-ESNVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALD 76 (172)
T ss_pred HHhhccHHHHHHHHHHhCc-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence 3577999999988776542 2 247888888888888888888999999999999999999999999986
No 52
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=93.08 E-value=0.13 Score=36.14 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=12.6
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhh
Q 032658 58 VGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTL 111 (136)
Q Consensus 58 Vs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~L 111 (136)
-...+.-.+-.++--.+.+++..|...|...|+++|+.+|+..++++|+.-..-
T Consensus 20 P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~Kl~R 73 (93)
T PF02269_consen 20 PLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKKLAR 73 (93)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHC----------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHHHHHH
Confidence 333444444444444445666666677778888999999999999999974333
No 53
>KOG1658 consensus DNA polymerase epsilon, subunit C [Replication, recombination and repair]
Probab=93.03 E-value=0.12 Score=40.01 Aligned_cols=76 Identities=21% Similarity=0.163 Sum_probs=64.7
Q ss_pred CcccchhhhhhhhhhccccccccCcc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhh
Q 032658 36 GIQFPVGRIHRHLKSRIAAHGRVGAT-AAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 113 (136)
Q Consensus 36 gL~fPVsrv~R~Lk~~~~a~~RVs~~-A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~ 113 (136)
-.++|.+||+.+++..-. .+...+ +...++..-|-++.+|-..++..+....++++.-+++..||..-+|+.++..
T Consensus 57 l~rLpL~rik~vvkl~pd--l~l~~dea~~l~a~aaelfi~~Ln~~~~~~~q~~k~kt~qr~d~D~ai~~~de~~fle~ 133 (162)
T KOG1658|consen 57 LSRLPLARIKQVVKLDPD--LTLLNDEASQLIAKAAELFIQELNDVAYTTAQLRKRKTEQRRDYDTAIEAVDEFAFLEG 133 (162)
T ss_pred hhhccHHHHHhhccCCcc--hhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhhcccccccchHHHHHHhh
Confidence 356999999999998765 366665 5555677889999999999999999999999999999999999999998874
No 54
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=92.56 E-value=0.77 Score=32.23 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=36.5
Q ss_pred hhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 44 IHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 44 v~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
|..+|---+..+ .-...+.-.|-.++-.++.+++-.|...|. .++.+|+++|+..++++|+.
T Consensus 8 i~~mmy~~GD~~-~P~~eTv~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~D~~ 69 (92)
T cd07978 8 IRQMMYGFGDVQ-NPLPETVDLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLRKDPK 69 (92)
T ss_pred HHHHHHHcCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHhcCHH
Confidence 344444333332 222333344444333344455556666665 56777899999999999997
No 55
>KOG1745 consensus Histones H3 and H4 [Chromatin structure and dynamics]
Probab=91.84 E-value=0.19 Score=38.02 Aligned_cols=67 Identities=19% Similarity=0.181 Sum_probs=53.5
Q ss_pred cccchhhhhhhhh---hccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 37 IQFPVGRIHRHLK---SRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 37 L~fPVsrv~R~Lk---~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
|.++-.++.|+.+ .+.....|+.++|...|-...|.++-.++|.+.--|-|.++-+|.|.||++|.+
T Consensus 62 LlI~K~PFqRlvrei~q~f~~dLrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArr 131 (137)
T KOG1745|consen 62 LLIRKLPFQRLVREIAQDFKTDLRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 131 (137)
T ss_pred HHhhcCcHHHHhHHHHhcccccceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhh
Confidence 3344444555555 222234689999999999999999999999999999999999999999999875
No 56
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=91.01 E-value=0.33 Score=40.22 Aligned_cols=71 Identities=10% Similarity=0.181 Sum_probs=59.6
Q ss_pred ccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHH
Q 032658 38 QFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD 109 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~ 109 (136)
.+-.-++..++++--. ...+..++--+|.-+.+-|+..|+..|+..|+|.+..+|..+||++.++++--++
T Consensus 154 il~k~kl~dLvqqId~-~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~ 224 (258)
T KOG1142|consen 154 ILSKRKLDDLVQQIDG-TTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNME 224 (258)
T ss_pred cccccchhHHHHhhcC-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeecccccc
Confidence 3445567777776543 3479999999999999999999999999999999999999999999998775543
No 57
>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=89.74 E-value=1.3 Score=33.83 Aligned_cols=56 Identities=29% Similarity=0.265 Sum_probs=45.7
Q ss_pred hhhhhhhccccccccCcchHHHHHHHHHH---HHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 44 IHRHLKSRIAAHGRVGATAAVYLASILEY---LTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 44 v~R~Lk~~~~a~~RVs~~A~VyLaAvLEy---L~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
|.-+|++.+ |.+.-|-...-.||+ ++..||+.|.-.+.|.++..|..+||++|++.
T Consensus 19 i~~iL~s~G-----I~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~ 77 (148)
T KOG3334|consen 19 IASILKSLG-----IQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQM 77 (148)
T ss_pred HHHHHHHcC-----ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHH
Confidence 667777755 455566667777776 67889999999999999999999999999974
No 58
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=82.49 E-value=1.4 Score=26.30 Aligned_cols=34 Identities=26% Similarity=0.370 Sum_probs=26.1
Q ss_pred HHHHHHhcCCceechhhHHHHhhCCh--HHHhhhhc
Q 032658 81 AGNASKDLKVKRITPRHLQLAIRGDE--ELDTLIKG 114 (136)
Q Consensus 81 Ag~~A~~~~~krItp~hI~~AI~nD~--EL~~Lf~~ 114 (136)
|-+.|...+...|+++||-+|+-.|+ ....+|+.
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~~ 36 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILKK 36 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHHH
Confidence 45678889999999999999977655 67777654
No 59
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=79.28 E-value=9.3 Score=28.81 Aligned_cols=62 Identities=23% Similarity=0.148 Sum_probs=48.1
Q ss_pred hhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceech---hhHHHHhhCC
Q 032658 42 GRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITP---RHLQLAIRGD 105 (136)
Q Consensus 42 srv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp---~hI~~AI~nD 105 (136)
--|+-+|+.-+. + -.+...|.-|-..---++.++|+.|.-.|.+.|+..|++ +||++|+..-
T Consensus 18 rlihliL~Slgi-~-~ye~~VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~l~veDvrLA~at~ 82 (145)
T COG5094 18 RLIHLILRSLGI-E-EYEPKVPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIATLGVEDVRLALATK 82 (145)
T ss_pred hHHHHHHHhcCc-h-hhCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHHHHHHH
Confidence 346667776553 3 345567777766666689999999999999999999888 9999999754
No 60
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=79.24 E-value=8.3 Score=29.16 Aligned_cols=68 Identities=13% Similarity=0.243 Sum_probs=43.3
Q ss_pred CcccchhhhhhhhhhccccccccCc-chHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 36 GIQFPVGRIHRHLKSRIAAHGRVGA-TAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 36 gL~fPVsrv~R~Lk~~~~a~~RVs~-~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
.+.+|-+-|...+-+.-.-..-+.. .--+++.+++||+.. +--.|..++.+..+++|.++||-.|+.|
T Consensus 9 e~sLPKATVqKMvS~iLp~dl~ftKearei~in~cieFi~~-lsseAne~ce~EaKKTIa~EHviKALen 77 (148)
T COG5150 9 ENSLPKATVQKMVSSILPKDLVFTKEAREIFINACIEFINM-LSSEANEACEEEAKKTIAYEHVIKALEN 77 (148)
T ss_pred cccCcHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccHHHHHHHHHh
Confidence 5667877777666543321112333 346788888888742 2223444555667899999999999975
No 61
>PF15510 CENP-W: Centromere kinetochore component W
Probab=75.68 E-value=8 Score=27.66 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=44.8
Q ss_pred ccchhhhhhhhhhccccccccCcchHHHHH------------HHHH--HHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 38 QFPVGRIHRHLKSRIAAHGRVGATAAVYLA------------SILE--YLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLa------------AvLE--yL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.-|.+.++|++++.-. ..|+..++-+... .=|. .++..+.|.|-..|.+++-..|.++|+..|..
T Consensus 16 kaPrgfLkrv~Kr~Kp-hlRl~~~~Dllv~~~~f~~~~~~~~vhLncLLFvhrLAEEaRtnA~EnK~~~Ik~~Hv~AaaK 94 (102)
T PF15510_consen 16 KAPRGFLKRVFKRQKP-HLRLETSGDLLVRFCPFSGWQWGGEVHLNCLLFVHRLAEEARTNACENKCGTIKKEHVLAAAK 94 (102)
T ss_pred hCchHHHHHHHHhcCC-ceeecccccHHHhhcccccccccceeehhHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3688999999986553 3477665433300 1111 24567788888888899999999999988754
No 62
>COG5251 TAF40 Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=71.81 E-value=5.4 Score=31.55 Aligned_cols=63 Identities=17% Similarity=0.241 Sum_probs=50.9
Q ss_pred cchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHH-hcCCceechhhHHHHhh
Q 032658 39 FPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASK-DLKVKRITPRHLQLAIR 103 (136)
Q Consensus 39 fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~-~~~~krItp~hI~~AI~ 103 (136)
||-..|+.+.-.-- .+ -|+..-.|||.++---++.||+|+|...-. +--...+.|.|++.|++
T Consensus 116 lnKt~VKKlastV~-nQ-tVspNi~I~l~g~~KVfvGEiIElA~~Vq~~w~~sgpl~p~h~reayr 179 (199)
T COG5251 116 LNKTQVKKLASTVA-NQ-TVSPNIRIFLQGVGKVFVGEIIELAMIVQNKWLTSGPLIPFHKREAYR 179 (199)
T ss_pred CCHHHHHHHHHHHh-cc-ccCCCeeeeeechhHHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHH
Confidence 77788888776643 25 799999999999999999999999977533 34455689999999986
No 63
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=71.44 E-value=17 Score=33.41 Aligned_cols=61 Identities=21% Similarity=0.198 Sum_probs=53.4
Q ss_pred hhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 41 VGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 41 Vsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
-..++-+.+.-+. . .|+.++...|+-=+||=+.||...|.+.-.+.+|.+.|-+||..|++
T Consensus 14 ~Es~k~vAEslGi-~-nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr 74 (576)
T KOG2549|consen 14 KESVKVVAESLGI-T-NLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALR 74 (576)
T ss_pred HHHHHHHHHHhCc-c-ccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHh
Confidence 5556555555554 3 69999999999999999999999999999999999999999999987
No 64
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=71.33 E-value=13 Score=25.86 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=41.0
Q ss_pred cccCcchHHHHHHHHHHH------HHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 56 GRVGATAAVYLASILEYL------TAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 56 ~RVs~~A~VyLaAvLEyL------~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
|.++..+-.+|..+++-+ ..-||.+|-..|.-.+...|+++||..|+.
T Consensus 41 ~~l~~~~~~~l~~~~~~~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~ 94 (96)
T PF13335_consen 41 CPLSSEAKKLLEQAAEKLNLSARGYHRILRVARTIADLEGSERITREHIAEALS 94 (96)
T ss_pred cCCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHh
Confidence 368888888888888766 456899999999999999999999999985
No 65
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=67.41 E-value=16 Score=22.25 Aligned_cols=32 Identities=13% Similarity=0.198 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHH
Q 032658 63 AVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLA 101 (136)
Q Consensus 63 ~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~A 101 (136)
|+|+- ..+=..+-..|++.|...||++++..|
T Consensus 13 P~fvR-------~~~r~~~E~~Ar~~G~~~IT~e~v~~A 44 (45)
T PF08369_consen 13 PFFVR-------KKLRDAAEKYARERGYDEITVEVVDAA 44 (45)
T ss_dssp -HHHH-------HHHHHHHHHHHHHCT-SEE-HHHHHHH
T ss_pred CHHHH-------HHHHHHHHHHHHHcCCCeECHHHHHhh
Confidence 66655 344445556899999999999999875
No 66
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=66.65 E-value=5.1 Score=35.97 Aligned_cols=31 Identities=29% Similarity=0.301 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
+.+||..|...|+..+...|+.+||+.||+.
T Consensus 475 l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 475 LADLLREANYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp HHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence 3788899999999999999999999999973
No 67
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=64.36 E-value=26 Score=30.56 Aligned_cols=62 Identities=23% Similarity=0.125 Sum_probs=51.7
Q ss_pred chhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 40 PVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 40 PVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
...-++..-..-+. . -|..++.-.|+.=|||=+.||.+.|.+.-.+++|...|..||..|.+
T Consensus 7 s~et~KdvAeslGi-~-Ni~Dd~l~alamDlEYRI~ev~qea~KFmvhSKRtvLt~dDis~ALr 68 (450)
T COG5095 7 SKETLKDVAESLGI-S-NIDDDALRALAMDLEYRIKEVCQEASKFMVHSKRTVLTIDDISYALR 68 (450)
T ss_pred cHHHHHHHHHHcCC-c-ccccHHHHHHHHhHHHHHHHHHHHHHHHhhcccceeeeHHhHHHHHH
Confidence 34445554444454 3 58899999999999999999999999999999999999999999987
No 68
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=56.13 E-value=19 Score=25.97 Aligned_cols=53 Identities=21% Similarity=0.288 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHHHHHH-------HHHHHHHHHhcCCceechhhHHHHhh--CChHHHhhhh
Q 032658 61 TAAVYLASILEYLTAEV-------LELAGNASKDLKVKRITPRHLQLAIR--GDEELDTLIK 113 (136)
Q Consensus 61 ~A~VyLaAvLEyL~~EI-------LelAg~~A~~~~~krItp~hI~~AI~--nD~EL~~Lf~ 113 (136)
.+.+||.++||---.+. +..+..++.-..+.-++-+||..+.+ -+|.|+.++.
T Consensus 22 ~ia~yL~~~le~~d~a~i~~alg~var~~GMsqvA~~aGlsRe~LYkaLS~~GNPtf~Til~ 83 (100)
T COG3636 22 AIAAYLNAALEEGDPALIAAALGVVARSRGMSQVARKAGLSREGLYKALSPGGNPTFDTILA 83 (100)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCHHHHHHHhCccHHHHHHHhCCCCCCcHHHHHH
Confidence 57899999998543333 33334444444566789999999998 4677777764
No 69
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=55.81 E-value=40 Score=30.89 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCCceechhhHHHHhhCC
Q 032658 75 AEVLELAGNASKDLKVKRITPRHLQLAIRGD 105 (136)
Q Consensus 75 ~EILelAg~~A~~~~~krItp~hI~~AI~nD 105 (136)
..|+..|...|+..+...|+.+||+.|++.-
T Consensus 361 ~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 361 GGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 4567778777888888999999999997743
No 70
>COG4430 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.81 E-value=16 Score=29.37 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=31.6
Q ss_pred HHHHHHHHHHH--HHHHHH-HhcCCceechhhHHHHhhCChHHHhhhhc
Q 032658 69 ILEYLTAEVLE--LAGNAS-KDLKVKRITPRHLQLAIRGDEELDTLIKG 114 (136)
Q Consensus 69 vLEyL~~EILe--lAg~~A-~~~~~krItp~hI~~AI~nD~EL~~Lf~~ 114 (136)
++++.++|+++ .+|..+ -......+.|++++.|+..++.|..+|..
T Consensus 110 mi~ayL~e~~~a~~aG~~~~~~~~~e~~IPeeLq~alda~palk~~f~~ 158 (200)
T COG4430 110 MIKAYLAEAIAAEKAGRWVALKKNEELIIPEELQDALDANPALKTAFEA 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCccCCCcccccCCcHHHHHHHhcCHHHHHHHHh
Confidence 44455555533 334442 23345568999999999999999999976
No 71
>KOG4336 consensus TBP-associated transcription factor Prodos [Transcription]
Probab=53.48 E-value=73 Score=27.35 Aligned_cols=82 Identities=13% Similarity=0.049 Sum_probs=65.0
Q ss_pred hhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh----CChHHHhhhhc-ccc-
Q 032658 44 IHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR----GDEELDTLIKG-TIA- 117 (136)
Q Consensus 44 v~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~----nD~EL~~Lf~~-~ia- 117 (136)
|.-+|++.++ . -|+..|-.-|.-+|.-.+.+|.+.+-+.+...||.--|+-||.+... +=..|...|++ .++
T Consensus 11 V~~Ll~~~gf-d-~is~~aletlvell~~yi~eigrq~~n~celagRT~pT~~Dv~l~Li~mnI~v~sL~~~~q~~~~sl 88 (323)
T KOG4336|consen 11 VSNLLKTKGF-D-SISNAALETLVELLQSYIREIGRQLHNYCELAGRTIPTQGDVKLTLIEMNIKVSSLYAYFQKQEFSL 88 (323)
T ss_pred HHHHHHHhCc-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHhCCChhhhHHHHHhccchh
Confidence 6667778775 4 69999999999999999999999999999999999999999988765 23568888887 653
Q ss_pred --CCCccCCccc
Q 032658 118 --GGGVIPHIHK 127 (136)
Q Consensus 118 --~ggv~p~i~~ 127 (136)
.--.+|++..
T Consensus 89 ~~~~~~aP~~~~ 100 (323)
T KOG4336|consen 89 WSVLIAAPENQE 100 (323)
T ss_pred hhccccCCCcCC
Confidence 4444555444
No 72
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=52.36 E-value=18 Score=33.70 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhh
Q 032658 75 AEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 113 (136)
Q Consensus 75 ~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~ 113 (136)
..|+..|+..|...+++-|+++|++.|+++..-....+.
T Consensus 369 ~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~~e~~l~ 407 (647)
T COG1067 369 GNLVREAGDIAVSEGRKLITAEDVEEALQKRELREGQLA 407 (647)
T ss_pred HHHHHHhhHHHhcCCcccCcHHHHHHHHHhhhhHHHHHH
Confidence 456778888999999999999999999998665444443
No 73
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=51.32 E-value=45 Score=27.38 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=33.6
Q ss_pred cCcchHHHHHHHHHH------HHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 58 VGATAAVYLASILEY------LTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 58 Vs~~A~VyLaAvLEy------L~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
++.++.-+++...+. .+-++++.|...|...++..|+++|++.|+.
T Consensus 221 ~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~ 272 (365)
T TIGR02928 221 LDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQE 272 (365)
T ss_pred CChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 556666666665542 3445777888878777888999999998875
No 74
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=50.62 E-value=67 Score=26.67 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=42.0
Q ss_pred cccc---hhhhhhhhhhcc---ccccccCcchHHHHHHHHHHH------HHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 37 IQFP---VGRIHRHLKSRI---AAHGRVGATAAVYLASILEYL------TAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 37 L~fP---Vsrv~R~Lk~~~---~a~~RVs~~A~VyLaAvLEyL------~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
+.|| ...+..+|++.- ....-++.++.-+++...... +-+++..|...|...+...|+++|++.|+..
T Consensus 202 i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~ 281 (394)
T PRK00411 202 IYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEK 281 (394)
T ss_pred eecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 4554 355555555421 101135666666666655432 2355777777787788889999999999873
No 75
>PLN00163 histone H4; Provisional
Probab=49.87 E-value=5.7 Score=26.01 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=21.7
Q ss_pred CCcccccCcccchhhhhhhhhhccccccccCcc
Q 032658 29 ISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGAT 61 (136)
Q Consensus 29 ~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~ 61 (136)
..+.+-.+++-|. |.|+-+.++. . |||..
T Consensus 22 ~lrd~i~gItKpa--IrRLARRgGV-K-RIs~~ 50 (59)
T PLN00163 22 VLRDNIQGITKPA--IRRLARRGGV-K-RISGL 50 (59)
T ss_pred HHHHhhcccchHH--HHHHHHhcCc-e-eecch
Confidence 4444556777776 9999999986 6 99875
No 76
>PF09123 DUF1931: Domain of unknown function (DUF1931); InterPro: IPR015207 This entry represents a set of hypothetical bacterial proteins containing a core of six alpha-helices, where one central helix is surrounded by the other five. The exact function of this family has not, as yet, been determined []. ; PDB: 1WWS_A 1WWI_A 1R4V_A.
Probab=48.64 E-value=13 Score=28.17 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=38.4
Q ss_pred hhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHH
Q 032658 44 IHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100 (136)
Q Consensus 44 v~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~ 100 (136)
++|+++.... .-|..+-.--+..++|-=+.+++..|-..|+.+|+..|.|.|+-.
T Consensus 1 fe~lFR~aa~--LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~ngRdvI~~~DLPI 55 (138)
T PF09123_consen 1 FERLFRKAAG--LDVDKNDAKRYSDFVEKKLYDLLLVAQENAKANGRDVIEPRDLPI 55 (138)
T ss_dssp HHHHHHHHHS------HHHHHHHHHHHHHHHHHCCCCHHHHHHHTT-SEE-GGGS--
T ss_pred ChHHHHHHhc--cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeccccCCc
Confidence 3566666543 246676677778888888999999999999999999999999754
No 77
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=47.37 E-value=32 Score=32.53 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhhc
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 114 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~~ 114 (136)
+.++++.|.++|...+...|+++|+-+++-.+.++..+|..
T Consensus 6 ~~~~l~~a~~~a~~~~~~~~~~~h~l~~l~~~~~~~~~~~~ 46 (758)
T PRK11034 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEA 46 (758)
T ss_pred HHHHHHHHHHHHHHcCCCcchHHHHHHHHHcChhHHHHHHH
Confidence 56778899999999999999999999999988877776653
No 78
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=47.02 E-value=62 Score=25.64 Aligned_cols=51 Identities=16% Similarity=0.120 Sum_probs=34.3
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 57 RVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 57 RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
.|+..|.-||...++.=+..+....-+.+.-.+.+.|+.+||+..+..+.+
T Consensus 130 ~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~ 180 (302)
T TIGR01128 130 RIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSAR 180 (302)
T ss_pred CCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhc
Confidence 799999999988887544444333333333333346999999988876655
No 79
>PF12096 DUF3572: Protein of unknown function (DUF3572); InterPro: IPR021955 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 100 amino acids in length.
Probab=46.98 E-value=13 Score=26.07 Aligned_cols=56 Identities=25% Similarity=0.272 Sum_probs=34.9
Q ss_pred hhhhhhhhhccccc--cccCcchHHHHHHHHHHHHHHH-HHHHHHHHHhcCCceechhhHHHHh
Q 032658 42 GRIHRHLKSRIAAH--GRVGATAAVYLASILEYLTAEV-LELAGNASKDLKVKRITPRHLQLAI 102 (136)
Q Consensus 42 srv~R~Lk~~~~a~--~RVs~~A~VyLaAvLEyL~~EI-LelAg~~A~~~~~krItp~hI~~AI 102 (136)
.++.|+|-..+... .|-...-|.||++||+||+.+= .-++.-.+ ..|.|+.|-.|-
T Consensus 22 e~l~rFLa~TG~~p~~LR~~a~dp~FL~~VLdFl~~de~~l~af~~a-----~~~~p~~v~~Ar 80 (88)
T PF12096_consen 22 ERLPRFLALTGLSPDDLRAAAGDPAFLAAVLDFLLMDEAWLLAFCDA-----AGIPPEAVAAAR 80 (88)
T ss_pred HHHHHHHHHhCCCHHHHHHHccChHHHHHHHHHHHcchHHHHHHHHH-----cCcChhHHHHHH
Confidence 35566665555432 4666678999999999998642 22222222 346777776664
No 80
>smart00350 MCM minichromosome maintenance proteins.
Probab=43.74 E-value=71 Score=28.40 Aligned_cols=67 Identities=13% Similarity=0.126 Sum_probs=48.6
Q ss_pred cccchhhhhhhhhhccc-cccccCcchHHHHHHHHHHHH-------------------HHHHHHHHHHHHhcCCceechh
Q 032658 37 IQFPVGRIHRHLKSRIA-AHGRVGATAAVYLASILEYLT-------------------AEVLELAGNASKDLKVKRITPR 96 (136)
Q Consensus 37 L~fPVsrv~R~Lk~~~~-a~~RVs~~A~VyLaAvLEyL~-------------------~EILelAg~~A~~~~~krItp~ 96 (136)
..++...+.+++.-.+. ...+++..+.-||......+= .-++.+|-..|+-..+..++++
T Consensus 416 ~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~ 495 (509)
T smart00350 416 VPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEA 495 (509)
T ss_pred ccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHH
Confidence 35778888888866553 212788888888766443322 3467777778888899999999
Q ss_pred hHHHHhh
Q 032658 97 HLQLAIR 103 (136)
Q Consensus 97 hI~~AI~ 103 (136)
|++.||+
T Consensus 496 Dv~~ai~ 502 (509)
T smart00350 496 DVEEAIR 502 (509)
T ss_pred HHHHHHH
Confidence 9999986
No 81
>KOG3901 consensus Transcription initiation factor IID subunit [Transcription]
Probab=42.89 E-value=1.1e+02 Score=22.28 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhc-CCceechhhHHHHhhCChHHH
Q 032658 71 EYLTAEVLELAGNASKDL-KVKRITPRHLQLAIRGDEELD 109 (136)
Q Consensus 71 EyL~~EILelAg~~A~~~-~~krItp~hI~~AI~nD~EL~ 109 (136)
++++..|.|+ .+.|+.. ++.++.-+|+..+|+.|+-=.
T Consensus 38 ~iV~~Yi~el-t~~a~~~g~rgk~~veD~~f~lRkDpkK~ 76 (109)
T KOG3901|consen 38 DIVLEYITEL-THAAMEIGKRGKVKVEDFKFLLRKDPKKL 76 (109)
T ss_pred HHHHHHHHHH-HHHHHHhcccCceeHHHHHHHHHhChHHH
Confidence 3334444444 4445443 455789999999999998633
No 82
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=42.44 E-value=71 Score=25.83 Aligned_cols=62 Identities=18% Similarity=0.081 Sum_probs=37.3
Q ss_pred hhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 43 RIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 43 rv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
.|...+++.+ ..|+.+|..||...++.=+..+....-..+.-.+...||.++|+..+..+.+
T Consensus 154 ~i~~~~~~~g---~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~ 215 (340)
T PRK05574 154 WIQQRLKQQG---LQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSAR 215 (340)
T ss_pred HHHHHHHHcC---CCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhc
Confidence 3444556655 2699999999888776433333322223332222223999999988876554
No 83
>KOG1658 consensus DNA polymerase epsilon, subunit C [Replication, recombination and repair]
Probab=41.66 E-value=48 Score=25.79 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=52.5
Q ss_pred cCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhhc
Q 032658 35 AGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 114 (136)
Q Consensus 35 agL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~~ 114 (136)
+...||++.++++-+...... --+..|-+..+...|.|+.-+..++. ....|..-.-|+..+..|++|..+-..
T Consensus 8 ~~p~~p~ekvkkiak~dPey~-~te~~a~~etafatE~fvq~lv~~p~-----a~l~rLpL~rik~vvkl~pdl~l~~de 81 (162)
T KOG1658|consen 8 CSPKLPMEKVKKIAKNDPEYM-DTEDDAFVETAFATEQFVQVLVHLPQ-----ASLSRLPLARIKQVVKLDPDLTLLNDE 81 (162)
T ss_pred hCccccHHHHHHhhcCCchhh-hcccchHHHHHHHHHHHHhhhhhhhh-----hhhhhccHHHHHhhccCCcchhhhhhH
Confidence 456699999999988876421 23345666788888888877777554 344567777888888888887766553
No 84
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=41.44 E-value=54 Score=26.39 Aligned_cols=42 Identities=14% Similarity=0.022 Sum_probs=35.2
Q ss_pred hhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 032658 42 GRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNAS 85 (136)
Q Consensus 42 srv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A 85 (136)
.||..+..+.+. . =|+.+++-+|...||+++.+|++-+...+
T Consensus 210 ~Rm~~ia~e~GL-~-gvs~~~a~ll~~ale~~LK~lI~s~l~~~ 251 (252)
T PF12767_consen 210 KRMEQIAWEHGL-G-GVSDDCANLLNLALEVHLKNLIKSCLDLV 251 (252)
T ss_pred HHHHHHHHHcCC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 677777777776 3 59999999999999999999999877643
No 85
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=40.62 E-value=45 Score=31.02 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 113 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~ 113 (136)
+.++++.|-.+|...+...|+|+|+-+|+-.+++...++.
T Consensus 5 a~~~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~~~~iL~ 44 (731)
T TIGR02639 5 LERILDAALEEAKKRRHEFVTLEHILLALLFDSDAIEILE 44 (731)
T ss_pred HHHHHHHHHHHHHHhCCCcCcHHHHHHHHHcCchHHHHHH
Confidence 3467788999999999999999999999988776555554
No 86
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=40.00 E-value=44 Score=28.69 Aligned_cols=73 Identities=19% Similarity=0.336 Sum_probs=50.7
Q ss_pred Ccccch---hhhhhhhhhccc---cccccCcchHHHHHHHHHHH------HHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 36 GIQFPV---GRIHRHLKSRIA---AHGRVGATAAVYLASILEYL------TAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 36 gL~fPV---srv~R~Lk~~~~---a~~RVs~~A~VyLaAvLEyL------~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.+.||. ..++-+|++... ....++.++--+.++.-.+- .-+|++.|++.|...+...|+++|+..|.
T Consensus 184 ~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~- 262 (366)
T COG1474 184 EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQ- 262 (366)
T ss_pred eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH-
Confidence 366775 566666654321 22456667776666555443 36889999999999999999999999993
Q ss_pred CChHHH
Q 032658 104 GDEELD 109 (136)
Q Consensus 104 nD~EL~ 109 (136)
.+.|..
T Consensus 263 ~~~~~~ 268 (366)
T COG1474 263 EEIERD 268 (366)
T ss_pred HHhhHH
Confidence 344433
No 87
>PHA02943 hypothetical protein; Provisional
Probab=37.81 E-value=79 Score=24.64 Aligned_cols=41 Identities=22% Similarity=0.169 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhhc
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 114 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~~ 114 (136)
+.+++..-...-+.++.+-|+|.++..-|..|.|-+.+|..
T Consensus 76 v~~~~Relwrlv~s~~~kfi~p~~l~~li~kd~~a~~~~ak 116 (165)
T PHA02943 76 VFEIKRELWRLVCNSRLKFITPSRLLRLIAKDTEAHNIFAK 116 (165)
T ss_pred HHHHHHHHHHHHHhccccccChHHHHHHHHhCHHHHHHHHH
Confidence 56677777777788899999999999999999999999976
No 88
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=37.20 E-value=71 Score=28.65 Aligned_cols=47 Identities=30% Similarity=0.318 Sum_probs=37.5
Q ss_pred ccCcchHHHHHHHHHHH------HHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 57 RVGATAAVYLASILEYL------TAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 57 RVs~~A~VyLaAvLEyL------~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.++..+..+|..+++-+ ..-||..|-..|.-.+...|+++||..|+.
T Consensus 445 ~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 445 KLSAIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred CCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 45666777766666554 456799999999999999999999999985
No 89
>PRK05629 hypothetical protein; Validated
Probab=34.03 E-value=1e+02 Score=25.26 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=37.7
Q ss_pred hhhhhhhhhccccccccCcchHHHHHHHHHH----HHHHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 42 GRIHRHLKSRIAAHGRVGATAAVYLASILEY----LTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 42 srv~R~Lk~~~~a~~RVs~~A~VyLaAvLEy----L~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
..|...+++.+ ..|+.+|.-||...++. +-.||=.++. .. ...||.+||+..+....|
T Consensus 133 ~wi~~~~~~~g---~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~----~~-~~~It~e~V~~~v~~~~~ 194 (318)
T PRK05629 133 GWVTQEFKNHG---VRPTPDVVHALLEGVGSDLRELASAISQLVE----DT-QGNVTVEKVRAYYVGVAE 194 (318)
T ss_pred HHHHHHHHHcC---CCCCHHHHHHHHHHHCccHHHHHHHHHHHHh----cC-CCCcCHHHHHHHhCCCcc
Confidence 34555556655 37999999898887654 3333333332 22 346999999999887665
No 90
>PRK09862 putative ATP-dependent protease; Provisional
Probab=33.48 E-value=91 Score=28.16 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=34.1
Q ss_pred ccCcchHHHHHHHHHHH------HHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 57 RVGATAAVYLASILEYL------TAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 57 RVs~~A~VyLaAvLEyL------~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.++..+.-+|....+-+ ...|+..|-..|.-.++..|+++||..|+.
T Consensus 438 ~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 438 KLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVS 490 (506)
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 45555555555443322 235688888889999999999999999997
No 91
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=32.50 E-value=1.2e+02 Score=24.75 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=37.6
Q ss_pred hhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHh--cCCceechhhHHHHhhCC
Q 032658 44 IHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKD--LKVKRITPRHLQLAIRGD 105 (136)
Q Consensus 44 v~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~--~~~krItp~hI~~AI~nD 105 (136)
|...+++.+ ..|+.+|.-+|+..++.=...+...--+.+-- .+..+|+++||+..+...
T Consensus 139 i~~~~~~~g---~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~ 199 (326)
T PRK07452 139 VERTAQELG---VKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT 199 (326)
T ss_pred HHHHHHHcC---CCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC
Confidence 444444444 37999999999888776444443333333333 245679999999988754
No 92
>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated
Probab=32.23 E-value=45 Score=21.15 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.8
Q ss_pred eechhhHHHHhhCChHHHhhhhc
Q 032658 92 RITPRHLQLAIRGDEELDTLIKG 114 (136)
Q Consensus 92 rItp~hI~~AI~nD~EL~~Lf~~ 114 (136)
.+.|.||..++..|++.+..|..
T Consensus 4 ~~vP~dl~~aL~~~p~a~~~f~~ 26 (63)
T PF13376_consen 4 VEVPEDLEAALEANPEAKEFFES 26 (63)
T ss_pred CCCCHHHHHHHHCCHHHHHHHHH
Confidence 46899999999999999999975
No 93
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=32.13 E-value=86 Score=25.39 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=31.7
Q ss_pred ccccCcccchhhhhhhhhh----ccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032658 32 SSRAGIQFPVGRIHRHLKS----RIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDL 88 (136)
Q Consensus 32 SsragL~fPVsrv~R~Lk~----~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~ 88 (136)
+..-.+.|....+.+.|++ .+. ..|..+...||+.++|.-+.+|++.+...|+|-
T Consensus 37 ~~~~~~fL~~~~L~~~i~~i~~~~g~--~~~~~d~l~llS~A~e~rLr~lie~~~~~s~hR 95 (264)
T PF05236_consen 37 SEKEEPFLNPSPLQKRIQKIAKKHGL--KSVDEDVLELLSLATEERLRNLIEKAIVLSRHR 95 (264)
T ss_dssp -------S-HHHHHHHHHHHHHCTT----EE-TCHHHHHHHHHHHHHHHHHHHHH------
T ss_pred ccccccccCHHHHHHHHHHHHHHcCC--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344566777666666644 332 268899999999999999999999999988763
No 94
>CHL00095 clpC Clp protease ATP binding subunit
Probab=30.75 E-value=67 Score=30.32 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 75 AEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 75 ~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
.++++.|-.+|...+...|+|+|+-+++-.+++
T Consensus 10 ~~vL~~A~~~A~~~~h~~V~~EHLLLaLL~~~~ 42 (821)
T CHL00095 10 IKVIMLSQEEARRLGHNFVGTEQILLGLIGEGT 42 (821)
T ss_pred HHHHHHHHHHHHHhCCCcCcHHHHHHHHHhCCC
Confidence 456778899999999999999999999877654
No 95
>PRK07914 hypothetical protein; Reviewed
Probab=30.39 E-value=1e+02 Score=25.34 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=36.3
Q ss_pred hhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 44 IHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 44 v~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
|...+++.+ ..|+.+|.-+|...++.=+.++...--+.+-..+ ..|+.++|+..+....|
T Consensus 137 i~~~a~~~g---~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~-~~It~e~V~~~v~~~~~ 196 (320)
T PRK07914 137 VRKEFRSLR---VKVDDDTVTALLDAVGSDLRELASACSQLVADTG-GAVDAAAVRRYHSGKAE 196 (320)
T ss_pred HHHHHHHcC---CCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCC-CCcCHHHHHHHcCCCee
Confidence 444445544 3799999999888775332222221112222223 46999999999987766
No 96
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=29.39 E-value=1e+02 Score=26.30 Aligned_cols=44 Identities=25% Similarity=0.211 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhhc
Q 032658 70 LEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 114 (136)
Q Consensus 70 LEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~~ 114 (136)
++|+..|+-++.-..-...|+ +|+++.|+.||+.-.+...++..
T Consensus 137 ~~Y~~~el~~l~~~LE~~~G~-~it~e~L~~aI~~~N~~R~~~~~ 180 (380)
T TIGR02263 137 GEFYTAELNELCEGLEHLSGK-KITDDAIRASIAVFNDNRKLIQA 180 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777666666 58999999999987777777654
No 97
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=29.28 E-value=1.1e+02 Score=25.00 Aligned_cols=62 Identities=13% Similarity=0.000 Sum_probs=40.2
Q ss_pred hhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHh-cCCceechhhHHHHhhCChH
Q 032658 43 RIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKD-LKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 43 rv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~-~~~krItp~hI~~AI~nD~E 107 (136)
.|...+++.+ .+|+.+|.-+|+..++.=+..+...--+.+-- .+...||.+||+..+....|
T Consensus 150 ~i~~~~~~~g---~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e 212 (343)
T PRK06585 150 LIDDELAEAG---LRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASA 212 (343)
T ss_pred HHHHHHHHCC---CCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCccc
Confidence 3555556655 37999999999988876433333322222222 23457999999998887666
No 98
>COG4905 Predicted membrane protein [Function unknown]
Probab=28.75 E-value=59 Score=26.43 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 032658 62 AAVYLASILEYLTAEVLELAGNA 84 (136)
Q Consensus 62 A~VyLaAvLEyL~~EILelAg~~ 84 (136)
-++++..|+||+++-|||.--|.
T Consensus 70 fsi~ivTv~Eyvt~~ILEa~Fn~ 92 (243)
T COG4905 70 FSIFIVTVLEYVTGFILEAIFNC 92 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 46789999999999999987663
No 99
>PHA02669 hypothetical protein; Provisional
Probab=28.56 E-value=50 Score=26.16 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 032658 62 AAVYLASILEYLTAEVL 78 (136)
Q Consensus 62 A~VyLaAvLEyL~~EIL 78 (136)
|.+||+++.=||+.||-
T Consensus 12 avi~LTgAaiYlLiEiG 28 (210)
T PHA02669 12 AVIYLTGAAIYLLIEIG 28 (210)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78899999999988873
No 100
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=28.26 E-value=83 Score=24.13 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHH----HHHHHHHHhcCCceechhhHHHHhh
Q 032658 62 AAVYLASILEYLTAEVL----ELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 62 A~VyLaAvLEyL~~EIL----elAg~~A~~~~~krItp~hI~~AI~ 103 (136)
++.=|.|.++|+-..-- +...+.++--|- .|||++|+.+|.
T Consensus 83 t~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~cGVGV-~VT~E~I~~~V~ 127 (164)
T PF04558_consen 83 TNLQLDAALKYLKSNPSEPIDVAEFEKACGVGV-VVTPEQIEAAVE 127 (164)
T ss_dssp SHHHHHHHHHHHHHHGG-G--HHHHHHTTTTT-----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHcCCCe-EECHHHHHHHHH
Confidence 56778999999988643 333444444443 699999999986
No 101
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=27.07 E-value=1e+02 Score=29.36 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCCh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 106 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~ 106 (136)
+..+++.|-.+|...+...|+|+|+-+++-.++
T Consensus 5 a~~vL~~A~~~A~~~~h~~V~~EHLLlaLl~~~ 37 (852)
T TIGR03346 5 FQEALQAAQSLALGRDHQQIEPEHLLKALLDQE 37 (852)
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 356778899999999999999999999987765
No 102
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=27.06 E-value=1.8e+02 Score=22.78 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=42.7
Q ss_pred CCcccccCcccchhhhhhhh----hhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032658 29 ISRSSRAGIQFPVGRIHRHL----KSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDL 88 (136)
Q Consensus 29 ~s~SsragL~fPVsrv~R~L----k~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~ 88 (136)
..++..-.+.|....+.+.| .+.+.. -|+.+...||+.++|..+..|++.+...+.+-
T Consensus 35 ~~~~~~~~~fl~~~~l~~~~~~i~~~~g~~--~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR 96 (212)
T cd08045 35 RARSQKDPSFLNPSPLAKKIRKIAKKHGLK--EVDEDVLDLISLALEERLRNLLEKLIEVSEHR 96 (212)
T ss_pred cccccchhhccCHHHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555667666555554 555432 58899999999999999999999999988763
No 103
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=26.66 E-value=1.3e+02 Score=24.96 Aligned_cols=63 Identities=14% Similarity=0.023 Sum_probs=44.3
Q ss_pred hhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHH
Q 032658 43 RIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 108 (136)
Q Consensus 43 rv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL 108 (136)
.|.+.+++.+ .+|+.+|.-||...++.=+.+|.-.--..+--...+.|+-++|+.+|....+.
T Consensus 148 ~i~~~~~~~~---l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~ 210 (334)
T COG1466 148 WIKKRAKELG---LKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEF 210 (334)
T ss_pred HHHHHHHHcC---CCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccC
Confidence 3444455555 38999999999999986655555444444444444499999999999876663
No 104
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=26.25 E-value=1e+02 Score=25.37 Aligned_cols=52 Identities=31% Similarity=0.245 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCce-echhhHHHHhhCChHHHhhhhc
Q 032658 63 AVYLASILEYLTAEVLELAGNASKDLKVKR-ITPRHLQLAIRGDEELDTLIKG 114 (136)
Q Consensus 63 ~VyLaAvLEyL~~EILelAg~~A~~~~~kr-Itp~hI~~AI~nD~EL~~Lf~~ 114 (136)
-..++.=||.+..||+|.+.+--++.--+. =+-.-|++-+..|+||..|++-
T Consensus 13 LL~~~dDlE~i~kelie~l~~~~~qk~l~~gE~v~il~Ll~~kd~ef~~llkl 65 (272)
T KOG4552|consen 13 LLESADDLEHIVKELIETLINRDKQKMLKNGETVNILKLLDSKDDEFKTLLKL 65 (272)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhHHHHHhcchHHHHHHHHHhccHHHHHHHHH
Confidence 344556688999999998876443321111 1236788888999999888864
No 105
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=26.12 E-value=1.6e+02 Score=24.34 Aligned_cols=57 Identities=19% Similarity=0.015 Sum_probs=37.8
Q ss_pred hhhhhhhhhccccccccCcchHHHHHHHHHH----HHHHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 42 GRIHRHLKSRIAAHGRVGATAAVYLASILEY----LTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 42 srv~R~Lk~~~~a~~RVs~~A~VyLaAvLEy----L~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
..|...+++.+ ..|+.+|..+|...++. +..||=.++.- .+ +||++||+..+....|
T Consensus 142 ~~i~~~~~~~g---~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly----~~--~It~edV~~~v~~~~e 202 (328)
T PRK08487 142 ELLQERAKELG---LDIDQNALNHLYFIHNEDLALAANELEKLAIL----NE--PITLKDIQELVFGLGS 202 (328)
T ss_pred HHHHHHHHHhC---CCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHh----cC--CCCHHHHHHHhccccc
Confidence 34555566665 37999999999887654 33344333332 22 6999999999865555
No 106
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=25.48 E-value=1.1e+02 Score=23.83 Aligned_cols=46 Identities=9% Similarity=-0.091 Sum_probs=30.0
Q ss_pred cCcchHHHHHHHHH---HHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 58 VGATAAVYLASILE---YLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 58 Vs~~A~VyLaAvLE---yL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
++..+...|..+-. +.+-.+...+...|...+.+.|++++|+.++.
T Consensus 216 ~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 216 FSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred cCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 55555544444433 13444556666666667888999999999986
No 107
>PRK05907 hypothetical protein; Provisional
Probab=25.05 E-value=1.5e+02 Score=24.82 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=35.9
Q ss_pred hhhhhhhccccccccCcchHHHHHHHH-H----HHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 44 IHRHLKSRIAAHGRVGATAAVYLASIL-E----YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 44 v~R~Lk~~~~a~~RVs~~A~VyLaAvL-E----yL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
|...+++.+ ..++.+|.-+|.... + .+..||=.++.- -..+.+|+.+||+..+....|
T Consensus 143 i~~~~~~~g---~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly---~g~~~~It~e~V~~lv~~s~e 205 (311)
T PRK05907 143 LIQRAKELG---ISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQ---MGKKESLEASDIQSFVVKKEA 205 (311)
T ss_pred HHHHHHHcC---CCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHh---cCCCCeECHHHHHHHhcCccc
Confidence 333444544 378888887777754 3 233333333322 134678999999999987777
No 108
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=24.77 E-value=1e+02 Score=28.20 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=32.8
Q ss_pred ccCcchHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 57 RVGATAAVYLASILEYLT-------AEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 57 RVs~~A~VyLaAvLEyL~-------~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
+|+....-||+....-+- .-++..|-..|...++..|+++||+.|+.
T Consensus 249 ~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~ 302 (633)
T TIGR02442 249 RISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAE 302 (633)
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 456666666555544332 23456666778889999999999999885
No 109
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=24.77 E-value=1.1e+02 Score=29.31 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCCh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 106 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~ 106 (136)
+.++++.|-.+|...+...|+++||-+|+-.++
T Consensus 5 a~~~L~~A~~~A~~~~h~~I~~eHLLlaLL~~~ 37 (852)
T TIGR03345 5 SRRALEQAAALCVARGHPEVELEHWLLALLDQP 37 (852)
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHhcc
Confidence 356788999999999999999999999987653
No 110
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=24.61 E-value=46 Score=21.16 Aligned_cols=22 Identities=50% Similarity=0.866 Sum_probs=16.5
Q ss_pred CChHHHhhhhccccCCCccCCccc
Q 032658 104 GDEELDTLIKGTIAGGGVIPHIHK 127 (136)
Q Consensus 104 nD~EL~~Lf~~~ia~ggv~p~i~~ 127 (136)
.|+||+++++.. .+||++-|..
T Consensus 16 s~eELd~ilGg~--g~Gv~~Tis~ 37 (51)
T PF04604_consen 16 SDEELDQILGGA--GNGVIKTISH 37 (51)
T ss_pred CHHHHHHHhCCC--CCCceeeccc
Confidence 699999999763 6677776654
No 111
>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription]
Probab=24.16 E-value=2.8e+02 Score=20.50 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=36.5
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCceechhhHHHHhhCChHHH
Q 032658 57 RVGATAAVYLASILEYLTAEVLELAGNASKDL-KVKRITPRHLQLAIRGDEELD 109 (136)
Q Consensus 57 RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~-~~krItp~hI~~AI~nD~EL~ 109 (136)
-+-.-++--.-+.=||+...+.+++-|+++-+ .+....-+|...|.+.|+-=.
T Consensus 24 Dvv~P~~dt~~~L~e~V~dY~~~~ctna~~~Aq~rnK~k~eDfkfaLr~DpkKl 77 (126)
T COG5248 24 DVVAPRYDTAEALHEYVLDYMSILCTNAHNMAQVRNKTKTEDFKFALRRDPKKL 77 (126)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHhhChHHH
Confidence 34444555555666788888888877765532 344578899999999998633
No 112
>PRK10865 protein disaggregation chaperone; Provisional
Probab=23.30 E-value=1.3e+02 Score=28.81 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChH--HHhhh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDTLI 112 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E--L~~Lf 112 (136)
+.++++.|...|...+...|+++|+-+++-.++. +..++
T Consensus 10 ~~~~l~~a~~~a~~~~~~~~~~~hll~~l~~~~~~~~~~~l 50 (857)
T PRK10865 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVRPLL 50 (857)
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCccHHHHHH
Confidence 4566788889999999999999999999987653 44444
No 113
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=22.78 E-value=2e+02 Score=22.98 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=29.4
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC-C--hHHHhhh
Q 032658 57 RVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG-D--EELDTLI 112 (136)
Q Consensus 57 RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n-D--~EL~~Lf 112 (136)
.++..+.-+|+....-=+.+++......+. +...|+++||+.++.. + ..+..++
T Consensus 203 ~~~~~al~~l~~~~~gdlr~l~~~l~~~~~--~~~~It~~~v~~~~~~~~~~~~i~~l~ 259 (337)
T PRK12402 203 DYDDDGLELIAYYAGGDLRKAILTLQTAAL--AAGEITMEAAYEALGDVGTDEVIESLL 259 (337)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHhCCCCCHHHHHHHH
Confidence 567776666665443223333332222332 2337999999998774 3 3444444
No 114
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=22.38 E-value=1.1e+02 Score=27.04 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 76 EVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 76 EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
.|+..|+..|-..++..|+.+|+..|+..
T Consensus 395 ~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 395 AICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred HHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 34555666677778889999999999863
No 115
>CHL00095 clpC Clp protease ATP binding subunit
Probab=22.22 E-value=1.2e+02 Score=28.67 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
+.++++.|...|...+...|+++|+-+|+-.+++
T Consensus 84 ~~~vL~~A~~~A~~~~~~~I~~eHLLlALL~~~d 117 (821)
T CHL00095 84 AKRVLEMSLEEARDLGHNYIGTEHLLLALLEEGE 117 (821)
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHHhCCC
Confidence 3567788888888888889999999999876654
No 116
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=22.14 E-value=1e+02 Score=29.96 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhhc
Q 032658 75 AEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 114 (136)
Q Consensus 75 ~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~~ 114 (136)
+.+|..|..+|+..|+..+||.|+-.++-.++ ..++..
T Consensus 17 a~~L~~a~~~Arrrgh~qvtplH~~~~LLs~~--t~~lr~ 54 (898)
T KOG1051|consen 17 ATVLKQAVTEARRRGHAQVTPLHVASTLLSSP--TGILRR 54 (898)
T ss_pred HHHHHHHHHHHHHcCCCCcchHHHHHHHHcCC--chHHHH
Confidence 45789999999999999999999999988776 344444
No 117
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=21.87 E-value=1.3e+02 Score=25.46 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=30.3
Q ss_pred ccCcchHHHHHHHHHHHHHH-------HHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 57 RVGATAAVYLASILEYLTAE-------VLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 57 RVs~~A~VyLaAvLEyL~~E-------ILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.|++...-|++.+...+-.+ ++..|-..|--+|+..++|+||+.++.
T Consensus 254 ~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~ 307 (337)
T TIGR02030 254 TIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAV 307 (337)
T ss_pred cCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 35555555555554443321 345555567788999999999998874
No 118
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=21.82 E-value=2.2e+02 Score=27.17 Aligned_cols=67 Identities=9% Similarity=0.148 Sum_probs=46.5
Q ss_pred cccchhhhhhhhhhccccccccCcchHHHHHHHHHHH-------------------HHHHHHHHHHHHHhcCCceechhh
Q 032658 37 IQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYL-------------------TAEVLELAGNASKDLKVKRITPRH 97 (136)
Q Consensus 37 L~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL-------------------~~EILelAg~~A~~~~~krItp~h 97 (136)
..||...|.|+++=.++...+++..|.-+|.--..-| +..++.|+-..|+-+.+..|||+|
T Consensus 556 ~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~ 635 (764)
T KOG0480|consen 556 CVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKED 635 (764)
T ss_pred ccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHH
Confidence 4699999999998776665589998887765432221 123455665667777777888888
Q ss_pred HHHHhh
Q 032658 98 LQLAIR 103 (136)
Q Consensus 98 I~~AI~ 103 (136)
++.|++
T Consensus 636 v~ea~e 641 (764)
T KOG0480|consen 636 VEEAVE 641 (764)
T ss_pred HHHHHH
Confidence 887764
No 119
>PF09077 Phage-MuB_C: Mu B transposition protein, C terminal ; InterPro: IPR009084 Bacteriophage Mu can integrate into the host bacterial genome and replicate via transposition. Mu requires the activity of four proteins for DNA transposition. Two of these proteins are the phage-encoded A and B transposition proteins, while the other two are host-specified accessory factors HU and IHF. These four proteins can form nucleoprotein complexes (transposomes), which enable strand transfer. The stable protein-DNA intermediate is subsequently disassembled prior to DNA replication by host proteins. The Mu B transposition protein is an ATP-dependent, DNA-binding protein required for target capture and immunity, as well as for activating transpososome function []. The C-terminal domain of the B transposition protein is believed to be involved in both DNA-binding and protein-protein contacts with the Mu A transposition protein. The structure of the C-terminal domain consists of four helices in an irregular array [].; GO: 0003677 DNA binding, 0006313 transposition, DNA-mediated; PDB: 1F6V_A.
Probab=21.57 E-value=43 Score=22.88 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
+...|.+|...|.-.+.. |+.+||+.|-+
T Consensus 48 l~ktLrlA~m~A~g~g~~-i~~~~i~~A~~ 76 (78)
T PF09077_consen 48 LTKTLRLAAMFAKGEGEA-ITADHIRAAWK 76 (78)
T ss_dssp HHHHHGGGT-TT-TTS---SSHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 355678888888877776 99999999864
No 120
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=21.52 E-value=1.2e+02 Score=25.27 Aligned_cols=28 Identities=14% Similarity=0.052 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 76 EVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 76 EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.++..|+..|...++..|+.+|+..|++
T Consensus 334 ~l~~~A~~~a~~~~~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 334 AICTEAGMFAIREERDYVTMDDFIKAVE 361 (364)
T ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 3455555666667888999999999986
No 121
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=21.51 E-value=1.1e+02 Score=28.40 Aligned_cols=34 Identities=24% Similarity=0.173 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
+.++|+.|..+|...+...|.++||-+|+-.|++
T Consensus 82 lk~vL~~A~~~A~~~g~~~I~teHLLLALl~~~~ 115 (731)
T TIGR02639 82 VQRVLQRALLHVKSAGKKEIGIGDILVALFDEED 115 (731)
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHhcCcc
Confidence 3567888988999889999999999999876643
No 122
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=21.26 E-value=98 Score=27.60 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=25.0
Q ss_pred eechhhHHHHhhCChHHHhhhhc--cccCCCccC
Q 032658 92 RITPRHLQLAIRGDEELDTLIKG--TIAGGGVIP 123 (136)
Q Consensus 92 rItp~hI~~AI~nD~EL~~Lf~~--~ia~ggv~p 123 (136)
.+.|||+++.++|-.++-.-.++ .|.-|.-.|
T Consensus 316 ~~APEHLei~~~~p~~~l~~I~nAGsIFlG~~sP 349 (425)
T COG0141 316 EYAPEHLELQTENPRELLGKIRNAGSIFLGHYSP 349 (425)
T ss_pred hhChHhhhhhhcCHHHHHHHhcccceeeecCCCC
Confidence 57899999999998887777766 666665444
No 123
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=21.02 E-value=2.6e+02 Score=18.51 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CceechhhHHHHhh-----------CChHHHhhhhc
Q 032658 70 LEYLTAEVLELAGNASKDLK-VKRITPRHLQLAIR-----------GDEELDTLIKG 114 (136)
Q Consensus 70 LEyL~~EILelAg~~A~~~~-~krItp~hI~~AI~-----------nD~EL~~Lf~~ 114 (136)
||+...++.+.=.......+ ...|+..++..++. .++++..++..
T Consensus 3 ~~~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~ 59 (94)
T cd05031 3 LEHAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKD 59 (94)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHH
Confidence 45555555553333443244 57899999998765 34667788765
No 124
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=21.01 E-value=2.7e+02 Score=18.67 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CceechhhHHHHhh---------CChHHHhhhhc
Q 032658 70 LEYLTAEVLELAGNASKDLK-VKRITPRHLQLAIR---------GDEELDTLIKG 114 (136)
Q Consensus 70 LEyL~~EILelAg~~A~~~~-~krItp~hI~~AI~---------nD~EL~~Lf~~ 114 (136)
||--+..|+++--.++.++| .-.|+..+++..+. .++|+..+++.
T Consensus 5 ~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~ 59 (88)
T cd05029 5 LDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMED 59 (88)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 55556667777777777666 77899999988884 45678888875
No 125
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=20.26 E-value=1.4e+02 Score=26.86 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCceechhhHHHHhhCC
Q 032658 76 EVLELAGNASKDLKVKRITPRHLQLAIRGD 105 (136)
Q Consensus 76 EILelAg~~A~~~~~krItp~hI~~AI~nD 105 (136)
.+++.|...|...++..|+.+||++++.+-
T Consensus 303 nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 303 NIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 446666666766778899999999999743
Done!