Query 032658
Match_columns 136
No_of_seqs 112 out of 556
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:24:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f8n_G Core histone macro-H2A. 100.0 2.1E-46 7.1E-51 274.2 9.5 110 25-135 9-119 (120)
2 1f66_C Histone H2A.Z; nucleoso 100.0 2E-46 7E-51 277.0 8.6 112 24-135 13-124 (128)
3 1id3_C Histone H2A.1; nucleoso 100.0 2.3E-45 7.8E-50 272.3 11.7 111 24-135 11-122 (131)
4 2nqb_C Histone H2A; nucleosome 100.0 6.4E-45 2.2E-49 267.3 9.6 111 24-135 9-120 (123)
5 1tzy_A Histone H2A-IV; histone 100.0 6.8E-45 2.3E-49 269.1 9.6 111 24-135 11-122 (129)
6 2f8n_K Histone H2A type 1; nuc 100.0 6.7E-44 2.3E-48 269.2 9.1 113 22-135 28-141 (149)
7 2jss_A Chimera of histone H2B. 100.0 6.7E-37 2.3E-41 238.6 9.6 99 27-125 94-192 (192)
8 3ksy_A SOS-1, SON of sevenless 99.9 2.5E-25 8.6E-30 206.3 7.5 99 28-128 94-192 (1049)
9 1jfi_A Transcription regulator 99.9 8.5E-24 2.9E-28 149.2 6.7 83 30-113 3-85 (98)
10 1n1j_B NF-YC; histone-like PAI 99.8 1.1E-19 3.9E-24 127.6 8.5 78 34-112 15-92 (97)
11 4g92_C HAPE; transcription fac 99.8 9.3E-19 3.2E-23 127.2 8.2 76 36-112 39-114 (119)
12 2byk_A Chrac-16; nucleosome sl 99.7 1.5E-17 5E-22 124.2 6.5 84 28-112 9-93 (140)
13 1tzy_D Histone H4-VI; histone- 99.7 3.7E-17 1.3E-21 115.9 7.8 77 25-105 18-94 (103)
14 2yfw_B Histone H4, H4; cell cy 99.7 3.5E-17 1.2E-21 116.2 7.1 78 25-106 18-95 (103)
15 1f1e_A Histone fold protein; a 99.5 3.5E-14 1.2E-18 107.4 6.9 71 33-105 77-147 (154)
16 1ku5_A HPHA, archaeal histon; 99.3 5.5E-12 1.9E-16 83.2 7.3 65 38-104 6-70 (70)
17 1id3_B Histone H4; nucleosome 99.3 9.2E-12 3.1E-16 88.2 7.9 75 27-105 19-93 (102)
18 1b67_A Protein (histone HMFA); 99.3 9.4E-12 3.2E-16 81.4 7.3 64 38-103 2-65 (68)
19 1n1j_A NF-YB; histone-like PAI 99.0 5.6E-10 1.9E-14 77.2 7.1 69 35-103 5-73 (93)
20 2hue_C Histone H4; mini beta s 99.0 2E-09 6.8E-14 73.4 7.5 70 32-105 6-75 (84)
21 3b0c_W CENP-W, centromere prot 98.9 2E-09 6.8E-14 72.0 6.8 65 38-103 4-68 (76)
22 1f1e_A Histone fold protein; a 98.9 2.6E-09 8.9E-14 80.7 7.2 64 38-102 4-67 (154)
23 1taf_B TFIID TBP associated fa 98.9 4.8E-09 1.7E-13 69.8 7.3 66 36-103 4-69 (70)
24 2byk_B Chrac-14; nucleosome sl 98.9 2.3E-09 7.7E-14 78.6 5.5 75 36-110 7-81 (128)
25 3b0c_T CENP-T, centromere prot 98.7 1.8E-08 6.3E-13 72.1 5.3 71 36-108 5-75 (111)
26 1taf_A TFIID TBP associated fa 98.7 6.8E-08 2.3E-12 63.8 7.1 61 42-104 5-65 (68)
27 1jfi_B DR1 protein, transcript 98.5 2.3E-07 7.9E-12 71.5 7.4 77 34-112 11-87 (179)
28 4dra_A Centromere protein S; D 98.4 4.7E-07 1.6E-11 65.2 6.5 77 34-114 26-104 (113)
29 2hue_B Histone H3; mini beta s 98.4 8.8E-07 3E-11 59.8 7.0 65 37-103 2-71 (77)
30 3v9r_A MHF1, uncharacterized p 98.4 8E-07 2.7E-11 61.6 6.8 78 34-114 11-89 (90)
31 3nqj_A Histone H3-like centrom 98.3 1.4E-06 4.9E-11 59.4 6.6 66 37-103 2-73 (82)
32 3b0b_B CENP-S, centromere prot 98.3 1.2E-06 4.1E-11 62.5 6.1 79 34-114 18-96 (107)
33 3nqu_A Histone H3-like centrom 98.3 1.8E-06 6.1E-11 64.2 6.8 69 34-103 57-131 (140)
34 3r45_A Histone H3-like centrom 98.3 1.6E-06 5.6E-11 65.4 6.2 70 34-104 73-148 (156)
35 3vh5_A CENP-S; histone fold, c 98.2 2.1E-06 7.3E-11 63.8 6.1 79 34-114 18-96 (140)
36 2yfv_A Histone H3-like centrom 98.2 4.3E-06 1.5E-10 58.9 6.2 70 34-103 23-98 (100)
37 1tzy_C Histone H3; histone-fol 98.1 6.7E-06 2.3E-10 60.8 7.2 67 35-103 59-130 (136)
38 1tzy_B Histone H2B; histone-fo 98.1 1.1E-05 3.7E-10 59.0 7.0 65 37-103 36-100 (126)
39 2l5a_A Histone H3-like centrom 98.0 5.3E-06 1.8E-10 66.3 5.5 58 44-103 167-224 (235)
40 2nqb_D Histone H2B; nucleosome 98.0 1.4E-05 4.9E-10 58.2 6.7 63 39-103 35-97 (123)
41 2ly8_A Budding yeast chaperone 98.0 1.9E-05 6.5E-10 57.4 6.6 52 50-103 59-110 (121)
42 2jss_A Chimera of histone H2B. 97.5 0.00022 7.6E-09 54.9 6.7 61 42-103 7-67 (192)
43 1bh9_B TAFII28; histone fold, 96.7 0.0055 1.9E-07 42.0 6.6 64 38-103 16-80 (89)
44 4dra_E Centromere protein X; D 96.7 0.0084 2.9E-07 40.8 7.3 69 34-102 8-77 (84)
45 3b0b_C CENP-X, centromere prot 96.4 0.014 4.7E-07 39.4 7.1 67 36-102 6-73 (81)
46 1h3o_B Transcription initiatio 95.3 0.093 3.2E-06 34.9 7.4 66 38-104 5-70 (76)
47 2l5a_A Histone H3-like centrom 94.8 0.048 1.7E-06 43.4 5.6 67 36-102 9-81 (235)
48 1wwi_A Hypothetical protein TT 90.8 0.75 2.6E-05 34.2 6.6 60 38-99 2-61 (148)
49 1k6k_A ATP-dependent CLP prote 90.3 0.42 1.4E-05 33.2 4.8 40 74-113 6-45 (143)
50 2y1q_A CLPC N-domain, negative 84.5 0.81 2.8E-05 32.0 3.4 40 74-113 10-51 (150)
51 1khy_A CLPB protein; alpha hel 83.9 1.1 3.9E-05 31.0 3.9 33 74-106 10-42 (148)
52 1r4v_A Hypothetical protein AQ 83.5 1.3 4.4E-05 33.6 4.2 61 38-100 26-86 (171)
53 3fes_A ATP-dependent CLP endop 83.1 0.77 2.6E-05 32.4 2.8 40 74-113 12-53 (145)
54 3fh2_A Probable ATP-dependent 83.0 1.1 3.9E-05 31.4 3.7 40 74-113 11-52 (146)
55 3fes_A ATP-dependent CLP endop 79.6 1.4 4.8E-05 31.0 3.1 41 74-114 86-128 (145)
56 3fh2_A Probable ATP-dependent 78.9 1.9 6.5E-05 30.2 3.6 40 75-114 87-128 (146)
57 3zri_A CLPB protein, CLPV; cha 78.5 2 6.9E-05 31.7 3.8 40 74-113 29-70 (171)
58 1khy_A CLPB protein; alpha hel 72.8 5.4 0.00019 27.4 4.6 40 74-113 87-127 (148)
59 1k6k_A ATP-dependent CLP prote 72.6 3.8 0.00013 28.2 3.8 40 74-113 84-125 (143)
60 3zri_A CLPB protein, CLPV; cha 70.8 4.2 0.00014 29.9 3.8 32 75-106 104-136 (171)
61 1r6b_X CLPA protein; AAA+, N-t 67.3 7.5 0.00026 34.1 5.3 40 74-113 6-45 (758)
62 3v9r_B MHF2, uncharacterized p 66.2 23 0.00077 24.0 6.3 49 39-87 2-51 (88)
63 2y1q_A CLPC N-domain, negative 63.9 4.2 0.00015 28.1 2.5 33 74-106 84-116 (150)
64 3uk6_A RUVB-like 2; hexameric 56.9 37 0.0013 26.2 7.1 48 57-104 278-329 (368)
65 2vxz_A Pyrsv_GP04; viral prote 56.5 31 0.0011 25.8 6.1 46 68-114 71-116 (165)
66 2v1u_A Cell division control p 54.8 43 0.0015 25.6 7.1 63 41-103 203-274 (387)
67 3kw6_A 26S protease regulatory 53.3 19 0.00067 22.3 4.1 24 80-103 48-71 (78)
68 1g8p_A Magnesium-chelatase 38 49.7 36 0.0012 25.9 5.9 47 57-103 267-320 (350)
69 3pxg_A Negative regulator of g 46.7 13 0.00046 30.9 3.2 39 74-112 10-50 (468)
70 2dzn_B 26S protease regulatory 45.6 31 0.0011 21.6 4.2 43 58-104 25-67 (82)
71 2qby_A CDC6 homolog 1, cell di 45.5 62 0.0021 24.6 6.7 48 57-104 218-271 (386)
72 3pxg_A Negative regulator of g 42.7 15 0.00051 30.6 2.8 34 74-107 84-117 (468)
73 3f8t_A Predicted ATPase involv 42.5 62 0.0021 28.1 6.8 66 38-103 393-481 (506)
74 3pxi_A Negative regulator of g 41.6 17 0.00059 31.9 3.2 39 74-112 10-50 (758)
75 3k1j_A LON protease, ATP-depen 38.1 84 0.0029 26.8 6.9 30 75-104 345-374 (604)
76 1qvr_A CLPB protein; coiled co 36.3 28 0.00097 31.1 3.8 34 74-107 10-43 (854)
77 2v6z_M DNA polymerase epsilon 35.7 32 0.0011 23.5 3.2 69 32-103 16-96 (99)
78 3aji_B S6C, proteasome (prosom 34.2 38 0.0013 21.1 3.2 21 83-103 49-69 (83)
79 1lv7_A FTSH; alpha/beta domain 33.8 42 0.0014 24.7 3.9 27 77-103 224-250 (257)
80 3pxi_A Negative regulator of g 32.8 25 0.00087 30.8 2.8 34 74-107 84-117 (758)
81 2krk_A 26S protease regulatory 32.7 61 0.0021 20.7 4.1 18 86-103 62-79 (86)
82 1r6b_X CLPA protein; AAA+, N-t 32.3 34 0.0012 29.8 3.6 34 74-107 84-117 (758)
83 2r2i_A Guanylyl cyclase-activa 31.9 90 0.0031 21.5 5.2 40 75-114 130-169 (198)
84 3vlf_B 26S protease regulatory 31.2 51 0.0017 21.0 3.5 19 85-103 51-69 (88)
85 1s1e_A KV channel interacting 30.7 1.2E+02 0.0043 21.7 6.0 49 76-124 173-222 (224)
86 1jba_A GCAP-2, protein (guanyl 29.8 1.1E+02 0.0037 21.2 5.4 41 74-114 146-186 (204)
87 3h4m_A Proteasome-activating n 29.5 55 0.0019 24.3 3.9 28 76-103 229-256 (285)
88 1iy2_A ATP-dependent metallopr 28.5 53 0.0018 24.6 3.7 27 77-103 252-278 (278)
89 1ixz_A ATP-dependent metallopr 28.4 55 0.0019 24.0 3.7 26 77-102 228-253 (254)
90 3bos_A Putative DNA replicatio 26.6 61 0.0021 22.8 3.5 47 57-104 193-242 (242)
91 3f4m_A Tumor necrosis factor, 25.8 39 0.0013 25.1 2.4 61 69-129 32-92 (161)
92 2qby_B CDC6 homolog 3, cell di 25.7 1.9E+02 0.0064 22.1 6.5 61 42-104 200-269 (384)
93 3n22_A Protein S100-A2; EF-han 25.5 1.4E+02 0.0047 19.2 5.1 45 70-114 6-62 (98)
94 2ggz_A Guanylyl cyclase-activa 25.3 1.1E+02 0.0037 21.6 4.7 39 75-113 134-172 (211)
95 2c9o_A RUVB-like 1; hexameric 23.7 59 0.002 26.6 3.4 64 41-104 368-436 (456)
96 2chg_A Replication factor C sm 23.1 1.4E+02 0.0049 20.2 4.9 45 57-103 180-224 (226)
97 2r44_A Uncharacterized protein 22.2 88 0.003 23.8 3.9 28 76-103 268-295 (331)
98 1njg_A DNA polymerase III subu 22.1 1.2E+02 0.0042 20.7 4.4 46 57-103 204-249 (250)
99 1f6v_A DNA transposition prote 21.5 22 0.00074 24.2 0.2 29 74-103 49-77 (91)
100 1fpw_A Yeast frequenin, calciu 21.0 2E+02 0.0067 19.3 5.6 42 73-114 144-185 (190)
No 1
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=100.00 E-value=2.1e-46 Score=274.23 Aligned_cols=110 Identities=54% Similarity=0.842 Sum_probs=104.8
Q ss_pred CCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 25 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 25 ~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
+++.+|+|+|+||||||+||+|||++++|++ ||+++|+|||+||||||++||+|+|+|+|+++++++|+|+||++||+|
T Consensus 9 ~~~~~srs~ragLqfPV~ri~R~Lk~~~~a~-RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 9 KSTKTSRSAKAGVIFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp -CCCCCHHHHHTCSSCHHHHHHHHHHHSSSC-EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CcCCcCcccccCccCChHHHHHHHHcCcccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 5567899999999999999999999999997 999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhhhc-cccCCCccCCcccccccccCC
Q 032658 105 DEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 135 (136)
Q Consensus 105 D~EL~~Lf~~-~ia~ggv~p~i~~~~~~~~~~ 135 (136)
|+||++||++ ||++|||+|+||++|+||+.+
T Consensus 88 DeEL~~Ll~~vtia~ggv~p~i~~~l~~k~~~ 119 (120)
T 2f8n_G 88 DEELNQLLKGVTIASGGVLPNIHPELLAKKRG 119 (120)
T ss_dssp SHHHHHHTTTEEETTCCCCCCCCGGGSCCC--
T ss_pred CHHHHHHhCCceECCCCcCCCcCHHHcCCccC
Confidence 9999999999 999999999999999999865
No 2
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=100.00 E-value=2e-46 Score=276.95 Aligned_cols=112 Identities=84% Similarity=1.211 Sum_probs=100.4
Q ss_pred CCCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 24 DKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 24 ~~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.+++.+|+|+||||||||+||+|||++++|+.+||+++|+|||+||||||++||+|+|+|+|+++++++|+|+||++||+
T Consensus 13 ~~~~~~srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 13 AKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp ----CCCHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred cCCCCcCccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 35567999999999999999999999999875599999999999999999999999999999999999999999999999
Q ss_pred CChHHHhhhhccccCCCccCCcccccccccCC
Q 032658 104 GDEELDTLIKGTIAGGGVIPHIHKSLINKTTK 135 (136)
Q Consensus 104 nD~EL~~Lf~~~ia~ggv~p~i~~~~~~~~~~ 135 (136)
||+||++||+.||++|||+|+||++|+||+++
T Consensus 93 nDeEL~~Ll~~tia~ggv~P~i~~~l~~k~~~ 124 (128)
T 1f66_C 93 GDEELDSLIKATIAGGGVIPHIHKSLIGKKGQ 124 (128)
T ss_dssp HSHHHHHHCCSEETTCCCCCCCCGGGC-----
T ss_pred ccHHHhhhhcceecCCccCCCCCHHhcCcccc
Confidence 99999999977999999999999999999874
No 3
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=100.00 E-value=2.3e-45 Score=272.26 Aligned_cols=111 Identities=56% Similarity=0.904 Sum_probs=103.9
Q ss_pred CCCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 24 DKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 24 ~~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.+++.+|+|+|+||||||+||+|||++++|++ ||+++|+|||+||||||++||+|+|+|+|+++++++|+|+||++||+
T Consensus 11 ~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~-RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 11 AAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp -----CCTTGGGTCSSCHHHHHHHHHTTCSCS-EECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCCCCCccccCCeecCHHHHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 35568999999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred CChHHHhhhhc-cccCCCccCCcccccccccCC
Q 032658 104 GDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 135 (136)
Q Consensus 104 nD~EL~~Lf~~-~ia~ggv~p~i~~~~~~~~~~ 135 (136)
||+|||+||++ ||++|||+|+||++|+||+.+
T Consensus 90 nDeEL~~Ll~~vtIa~ggvlP~i~~~l~~k~~~ 122 (131)
T 1id3_C 90 NDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSA 122 (131)
T ss_dssp TCHHHHHHTTTEEETTCCCCCCCCGGGSCCSCC
T ss_pred ccHHHHHHhcCceecCCccCCCccHHHcCcccc
Confidence 99999999999 999999999999999999864
No 4
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=100.00 E-value=6.4e-45 Score=267.31 Aligned_cols=111 Identities=63% Similarity=0.932 Sum_probs=103.6
Q ss_pred CCCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 24 DKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 24 ~~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.+++.+|+|+|+||||||+||+|||++++|++ ||+++|+|||+||||||++||+|+|+|+|+++++++|+|+||++||+
T Consensus 9 ~~~~~~s~s~ragL~fPV~ri~R~Lk~~~~a~-RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 9 VKGKAKSRSNRAGLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp ----CCCHHHHHTCSSCHHHHHHHHHHTTSCS-EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCCCCCccccCCeeccHHHHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 45678999999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred CChHHHhhhhc-cccCCCccCCcccccccccCC
Q 032658 104 GDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 135 (136)
Q Consensus 104 nD~EL~~Lf~~-~ia~ggv~p~i~~~~~~~~~~ 135 (136)
||+||++||++ ||++|||+|+||++|+||+.+
T Consensus 88 nDeEL~~Ll~~vtia~ggvlp~i~~~l~~k~~~ 120 (123)
T 2nqb_C 88 NDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTE 120 (123)
T ss_dssp TSHHHHHHTTTEEETTCCCCCCCCGGGSSCC--
T ss_pred ccHHHHHHhcCceeCCCCcCCCccHHHcCcccc
Confidence 99999999999 999999999999999999864
No 5
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=100.00 E-value=6.8e-45 Score=269.12 Aligned_cols=111 Identities=62% Similarity=0.922 Sum_probs=103.5
Q ss_pred CCCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 24 DKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 24 ~~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.+++.+|+|+|+||||||+||+|||++++|++ ||+++|+|||+||||||++||+|+|+|+|+++++++|+|+||++||+
T Consensus 11 ~~~~~~srS~ragLqfPV~rI~R~Lk~~~~a~-RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 11 ARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp ---CCCCHHHHHTCSSCHHHHHHHHHHTTSSS-EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCCCCCccccCceeccHHHHHHHHHcccccc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 45678999999999999999999999999997 99999999999999999999999999999999999999999999999
Q ss_pred CChHHHhhhhc-cccCCCccCCcccccccccCC
Q 032658 104 GDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 135 (136)
Q Consensus 104 nD~EL~~Lf~~-~ia~ggv~p~i~~~~~~~~~~ 135 (136)
||+||++||++ ||++|||+|+||++|+|++.+
T Consensus 90 nDeEL~~L~~~vtIa~ggvlP~i~~~l~~k~~~ 122 (129)
T 1tzy_A 90 NDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTD 122 (129)
T ss_dssp TSHHHHHHTTTEEETTCCCCCCCCGGGSCC---
T ss_pred ccHHHHHHhCCCeecCCCcCCCCCHHHcCcccc
Confidence 99999999999 999999999999999999864
No 6
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=100.00 E-value=6.7e-44 Score=269.24 Aligned_cols=113 Identities=60% Similarity=0.912 Sum_probs=102.8
Q ss_pred CCCCCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHH
Q 032658 22 DKDKKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLA 101 (136)
Q Consensus 22 ~~~~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~A 101 (136)
++.+++.+|+|+||||||||+||+|||++++|++ ||+++|+|||+||||||++||+|+|+|+|+++++++|+|+||++|
T Consensus 28 ~~~~~k~~srS~ragLqFPVgrI~R~LK~~~~a~-RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lA 106 (149)
T 2f8n_K 28 GKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLA 106 (149)
T ss_dssp ------CCCHHHHHTCSSCHHHHHHHHHHTTSCS-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCCCCCCccccCCeeccHHHHHHHHHcccccc-ccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHH
Confidence 3456678999999999999999999999999997 999999999999999999999999999999999999999999999
Q ss_pred hhCChHHHhhhhc-cccCCCccCCcccccccccCC
Q 032658 102 IRGDEELDTLIKG-TIAGGGVIPHIHKSLINKTTK 135 (136)
Q Consensus 102 I~nD~EL~~Lf~~-~ia~ggv~p~i~~~~~~~~~~ 135 (136)
|+||+||++||++ ||++|||+|+||++|+||+.+
T Consensus 107 I~nDeEL~~Ll~~vtIa~gGVlP~i~~~l~~k~~~ 141 (149)
T 2f8n_K 107 IRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTE 141 (149)
T ss_dssp HHHSHHHHHHTTTEEETTCCCCCCCCGGGSCC---
T ss_pred HhccHHHHHHhcCceEcCCCCCCCccHHHcCcccc
Confidence 9999999999999 999999999999999999864
No 7
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=100.00 E-value=6.7e-37 Score=238.65 Aligned_cols=99 Identities=72% Similarity=1.097 Sum_probs=94.7
Q ss_pred CCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCCh
Q 032658 27 RPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 106 (136)
Q Consensus 27 ~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~ 106 (136)
+.+|+|+|+||||||+||+|||++++++.+||+++|+|||+||||||++||+|+|+|+|+++++++|+|+||++||+||+
T Consensus 94 ~~~s~s~ragl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~ 173 (192)
T 2jss_A 94 QAQSSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDD 173 (192)
T ss_dssp SSSCHHHHSSCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSH
T ss_pred ccccccccCCCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccH
Confidence 46799999999999999999999998864499999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccccCCCccCCc
Q 032658 107 ELDTLIKGTIAGGGVIPHI 125 (136)
Q Consensus 107 EL~~Lf~~~ia~ggv~p~i 125 (136)
||++||+.||++|||+|+|
T Consensus 174 eL~~L~~~ti~~ggv~p~i 192 (192)
T 2jss_A 174 ELDSLIRATIASGGVLPHI 192 (192)
T ss_dssp HHHHHHCSCCTTTCCSSCC
T ss_pred HHHHHHhhhhcCCCcCCCC
Confidence 9999997799999999997
No 8
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=99.91 E-value=2.5e-25 Score=206.29 Aligned_cols=99 Identities=22% Similarity=0.465 Sum_probs=81.6
Q ss_pred CCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 28 PISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 28 ~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
..|+|+||||||||+||+|+| +++|++ ||+++|||||+||||||++||||+|||+|++.++++|+|+||++|++||+|
T Consensus 94 ~~~~~~~~~l~~pv~~~~~~l-~~~~~~-r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~e 171 (1049)
T 3ksy_A 94 IEKRKRRNPLSLPVEKIHPLL-KEVLGY-KIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMCADKV 171 (1049)
T ss_dssp HTTCCCSSSCSSCHHHHHHHH-HHHHCS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSS
T ss_pred hhcccccCCccccHHHHHHHh-hccccc-ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCccccccccCCHH
Confidence 368999999999999999999 999997 999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccccCCCccCCcccc
Q 032658 108 LDTLIKGTIAGGGVIPHIHKS 128 (136)
Q Consensus 108 L~~Lf~~~ia~ggv~p~i~~~ 128 (136)
|..||+.....+|++|.....
T Consensus 172 L~~l~~~dee~~~~lp~~~~~ 192 (1049)
T 3ksy_A 172 LMDMFHQDVEDINILSLTDEE 192 (1049)
T ss_dssp HHHHCC---------------
T ss_pred HHHHHhhccccccCCCCcccc
Confidence 999998755566788876654
No 9
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.89 E-value=8.5e-24 Score=149.16 Aligned_cols=83 Identities=20% Similarity=0.316 Sum_probs=62.1
Q ss_pred CcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHH
Q 032658 30 SRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD 109 (136)
Q Consensus 30 s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~ 109 (136)
+++.+++++||++||+|+||.+.+.. |||.+|+||+++++|||+.||+++|++.|+++++++|+|+||..||++|++|+
T Consensus 3 ~~~kk~~~~fPvaRIkrimK~~~~~~-~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~ 81 (98)
T 1jfi_A 3 SKKKKYNARFPPARIKKIMQTDEEIG-KVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPA 81 (98)
T ss_dssp -------CCCCHHHHHHHHTTSTTCC-CBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC------
T ss_pred CcccccCCCCChHHHHHHHHcCcccc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhh
Confidence 35778999999999999999999987 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhh
Q 032658 110 TLIK 113 (136)
Q Consensus 110 ~Lf~ 113 (136)
+|+.
T Consensus 82 FL~d 85 (98)
T 1jfi_A 82 ANKA 85 (98)
T ss_dssp ----
T ss_pred HHHh
Confidence 9984
No 10
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.80 E-value=1.1e-19 Score=127.59 Aligned_cols=78 Identities=22% Similarity=0.253 Sum_probs=71.3
Q ss_pred ccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhh
Q 032658 34 RAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 112 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf 112 (136)
-.+++||++||+|+||.+.+.. |||.+|++|++.++|||+.+|++.|++.|.++++++|+++||..||++|++|++|.
T Consensus 15 ~~~~~lP~arIkrImK~~~~~~-~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 15 FRVQELPLARIKKIMKLDEDVK-MISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp -----CCHHHHHHHHTTSTTCC-CBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCcCCHHHHHHHHccCcccc-ccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 3478899999999999999876 99999999999999999999999999999999999999999999999999999998
No 11
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.77 E-value=9.3e-19 Score=127.19 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=72.2
Q ss_pred CcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhh
Q 032658 36 GIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 112 (136)
Q Consensus 36 gL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf 112 (136)
..+||++||+|+||.+.+.. +|+.+|++|+++++|||+.+|++.|++.|..+++++|+|+||..||++|++|++|.
T Consensus 39 ~~~lPvaRIkrImK~d~~~~-~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL~ 114 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVK-MISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFLI 114 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCC-EECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred cCCCCHHHHHHHHhhCCccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHHH
Confidence 34699999999999998876 99999999999999999999999999999999999999999999999999999875
No 12
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.70 E-value=1.5e-17 Score=124.15 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=62.1
Q ss_pred CCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHH-HhcCCceechhhHHHHhhCCh
Q 032658 28 PISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNAS-KDLKVKRITPRHLQLAIRGDE 106 (136)
Q Consensus 28 ~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A-~~~~~krItp~hI~~AI~nD~ 106 (136)
..+++.+..++||++||+|+||...... +|+..|+++++.++|||+.+|++.|++.| ...++++|+++||..||.+++
T Consensus 9 ~~s~~~~~~~~LPlaRIKrIMK~dpdv~-~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e 87 (140)
T 2byk_A 9 PVERPPTAETFLPLSRVRTIMKSSMDTG-LITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNK 87 (140)
T ss_dssp --------------------CCSSSSCS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCS
T ss_pred CCCCCcccCCCCCHHHHHHHHhcCcccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCc
Confidence 5678889999999999999999998876 99999999999999999999999999999 999999999999999999999
Q ss_pred HHHhhh
Q 032658 107 ELDTLI 112 (136)
Q Consensus 107 EL~~Lf 112 (136)
+|.+|.
T Consensus 88 ~~dFL~ 93 (140)
T 2byk_A 88 NLEFLL 93 (140)
T ss_dssp TTGGGT
T ss_pred hhhhHh
Confidence 999998
No 13
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.70 E-value=3.7e-17 Score=115.95 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=70.6
Q ss_pred CCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 25 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 25 ~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
+.++.++++..+ ||++.|.|+++..++ . |||.++.++|+.+|||++.+|++.|.+.|+++++++|+++||.+|+++
T Consensus 18 r~~k~~r~~~~g--ip~~~I~Rlar~~G~-~-rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~ 93 (103)
T 1tzy_D 18 RHRKVLRDNIQG--ITKPAIRRLARRGGV-K-RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR 93 (103)
T ss_dssp ---CCCCCGGGG--SCHHHHHHHHHHTTC-C-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccchhhhccc--CCHHHHHHHHHHcCc-c-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 556778999999 999999999999986 5 999999999999999999999999999999999999999999999985
Q ss_pred C
Q 032658 105 D 105 (136)
Q Consensus 105 D 105 (136)
.
T Consensus 94 ~ 94 (103)
T 1tzy_D 94 Q 94 (103)
T ss_dssp T
T ss_pred c
Confidence 4
No 14
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.69 E-value=3.5e-17 Score=116.15 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=63.0
Q ss_pred CCCCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 25 KKRPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 25 ~~~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
+.+++++++.++ ||++.|.|+++..++ . |||.+|.++|+.+|||++.+|++.|.+.|+++++++|+++||.+|+++
T Consensus 18 r~~~~~r~~~~g--ip~~~I~Rlar~~G~-~-rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~ 93 (103)
T 2yfw_B 18 RHRKILRDNIQG--ITKPAIRRLARRGGV-K-RISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKR 93 (103)
T ss_dssp --------------CCHHHHHHHHHHTTC-C-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred chhhhhhhhhcc--CCHHHHHHHHHHcCc-c-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence 556778899999 999999999999987 5 999999999999999999999999999999999999999999999985
Q ss_pred Ch
Q 032658 105 DE 106 (136)
Q Consensus 105 D~ 106 (136)
..
T Consensus 94 ~g 95 (103)
T 2yfw_B 94 QG 95 (103)
T ss_dssp HC
T ss_pred cC
Confidence 43
No 15
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.49 E-value=3.5e-14 Score=107.41 Aligned_cols=71 Identities=20% Similarity=0.146 Sum_probs=66.9
Q ss_pred cccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCC
Q 032658 33 SRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 105 (136)
Q Consensus 33 sragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD 105 (136)
.+.++.||++.|.|+|++++ +. |||++|.++|+.+||+|+.+|...|...|++++|++|+++||.+|++++
T Consensus 77 d~~~l~lP~a~V~Ri~k~~g-~~-RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 77 DYDGELFGRATVRRILKRAG-IE-RASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp TCCSCCCCHHHHHHHHHHTT-CC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccccCCccHHHHHHHHcC-Cc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 37899999999999999994 56 9999999999999999999999999999999999999999999999854
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.31 E-value=5.5e-12 Score=83.19 Aligned_cols=65 Identities=26% Similarity=0.360 Sum_probs=61.9
Q ss_pred ccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 38 QFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
.||++.|.|++++.+ .. |||.++...|..++|+++.+|++.|...|.|.+|++|+++||++|+++
T Consensus 6 ~lp~a~v~Rl~r~~g-~~-ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 6 ELPIAPVDRLIRKAG-AE-RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CSCHHHHHHHHHHTT-CS-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred cCChHHHHHHHHHcC-cc-eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 689999999999987 45 999999999999999999999999999999999999999999999874
No 17
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.29 E-value=9.2e-12 Score=88.17 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=64.5
Q ss_pred CCCCcccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCC
Q 032658 27 RPISRSSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 105 (136)
Q Consensus 27 ~~~s~SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD 105 (136)
+++.+.+..+ +|...|.|+++..+. . |||.++...|..+|||++.+|+..|...++|+++++|+++||.+|++..
T Consensus 19 ~k~~r~~i~~--ip~~~I~Rlar~~Gv-~-rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 19 RKILRDNIQG--ITKPAIRRLARRGGV-K-RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp -----CCGGG--SCHHHHHHHHHHTTC-C-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHhccCC--CCHHHHHHHHHHcCc-h-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3445555556 899999999999985 5 9999999999999999999999999999999999999999999999843
No 18
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.29 E-value=9.4e-12 Score=81.37 Aligned_cols=64 Identities=30% Similarity=0.377 Sum_probs=60.6
Q ss_pred ccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 38 QFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.||.++|.|+|++.. .. ||+++|...|..++|+++.+|.+.|...|.++++++|+|+||++|++
T Consensus 2 ~lP~a~v~Ri~k~~~-~~-ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~ 65 (68)
T 1b67_A 2 ELPIAPIGRIIKNAG-AE-RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK 65 (68)
T ss_dssp CSCHHHHHHHHHHTT-CS-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGG
T ss_pred CCCccHHHHHHhcCC-cc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 489999999999994 44 99999999999999999999999999999999999999999999986
No 19
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.04 E-value=5.6e-10 Score=77.16 Aligned_cols=69 Identities=17% Similarity=0.283 Sum_probs=62.8
Q ss_pred cCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 35 AGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 35 agL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
..+.||.++|.|+|++......||+++|...|+.+.|.++.+|...|...|.+.+|++|+++||..|++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 467899999999999984323599999999999999999999999999999999999999999999997
No 20
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.96 E-value=2e-09 Score=73.43 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=63.9
Q ss_pred ccccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCC
Q 032658 32 SSRAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGD 105 (136)
Q Consensus 32 SsragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD 105 (136)
.+..+ +|...|.|+++..+. . |||.++...|..++||++.+|+..|...++|.++++|+++||.+|++..
T Consensus 6 ~~~~~--ip~~~I~Riar~~Gv-~-rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 6 DNIQG--ITKPAIRRLARRGGV-K-RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp GGCCS--SCHHHHHHHHHHTTC-C-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred ccCCC--CCHHHHHHHHHHcCc-h-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 33445 789999999999985 5 9999999999999999999999999999999999999999999999854
No 21
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.94 E-value=2e-09 Score=72.02 Aligned_cols=65 Identities=20% Similarity=0.237 Sum_probs=60.5
Q ss_pred ccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 38 QFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.||.+.|.|+|++.-.. .+||.+|...|.-++|.|+.+|...|...|.++++++|+++||..|++
T Consensus 4 ~LP~A~V~rI~K~~~p~-~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHKPH-LRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp CCCHHHHHHHHHHHCTT-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 58999999999976434 499999999999999999999999999999999999999999999986
No 22
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.91 E-value=2.6e-09 Score=80.66 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=60.6
Q ss_pred ccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHh
Q 032658 38 QFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 102 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI 102 (136)
-+|.+.|.|+||+.-.+. |||.+|...|+.++|.|+.+|...|.+.|.+.+||+|+++||.+|+
T Consensus 4 ~LP~a~V~Riik~~lg~~-rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~ 67 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGER-RLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA 67 (154)
T ss_dssp CCCHHHHHHHHHTTSTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCcc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 489999999999993355 9999999999999999999999999999999999999999999998
No 23
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.90 E-value=4.8e-09 Score=69.77 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=62.2
Q ss_pred CcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 36 GIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 36 gL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.-.||+..|+++.+..+. . ||+.++...|+.-+||-+.||++.|.+.++|++|++++.+||+.|++
T Consensus 4 ~s~lp~~~v~~iaes~Gi-~-~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAESIGV-G-SLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHHTTC-C-CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHCCC-C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 346999999999999985 5 99999999999999999999999999999999999999999999975
No 24
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.87 E-value=2.3e-09 Score=78.58 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=62.3
Q ss_pred CcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHh
Q 032658 36 GIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDT 110 (136)
Q Consensus 36 gL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~ 110 (136)
.+.||+++|.|+|++......+||.+|.+.|+.+.|.|+.+|...|...|.+.+|++|+++||..|+...+-+++
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~f 81 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESF 81 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTT
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHH
Confidence 578999999999996432124999999999999999999999999999999999999999999999996554433
No 25
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.70 E-value=1.8e-08 Score=72.08 Aligned_cols=71 Identities=11% Similarity=0.044 Sum_probs=61.5
Q ss_pred CcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHH
Q 032658 36 GIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL 108 (136)
Q Consensus 36 gL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL 108 (136)
.+.+|.+-|.|++++.+. . |||.++...|..+++.++.+|...|...|+|.+|++|+++||.+|++....+
T Consensus 5 d~~lP~a~I~Ri~r~~g~-~-rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHYVK-T-PVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp -----CHHHHHHHHHHHC-S-CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHCCC-C-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 456899999999999974 4 9999999999999999999999999999999999999999999999965543
No 26
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.67 E-value=6.8e-08 Score=63.83 Aligned_cols=61 Identities=16% Similarity=0.054 Sum_probs=57.3
Q ss_pred hhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 42 GRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 42 srv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
-.|.|+|++.+ ++ |++..++..|.-.+|-++.+|++.|...|.|.|+++|+.+||++||+.
T Consensus 5 ~~i~~iLk~~G-~~-~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELN-VQ-EYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTT-CC-CBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCC-Cc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 35899999998 47 999999999999999999999999999999999999999999999974
No 27
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.52 E-value=2.3e-07 Score=71.53 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=67.4
Q ss_pred ccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhh
Q 032658 34 RAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 112 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf 112 (136)
-..+.||++.|.|+|++... ..||+.+|...|..+++-|+..|...|...|.+.+|++|+++||..|+. +-+|..++
T Consensus 11 ~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~-~LgF~~fv 87 (179)
T 1jfi_B 11 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE-SLGFGSYI 87 (179)
T ss_dssp -CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH-HHTTGGGH
T ss_pred hhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH-hcChHHHH
Confidence 45678999999999999864 3599999999999999999999999999999999999999999999998 55544443
No 28
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.43 E-value=4.7e-07 Score=65.19 Aligned_cols=77 Identities=12% Similarity=0.135 Sum_probs=65.4
Q ss_pred ccCcccchhhhhhhhhhccccc--cccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhh
Q 032658 34 RAGIQFPVGRIHRHLKSRIAAH--GRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTL 111 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~~a~--~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~L 111 (136)
++-|.+.|++|- ++.+ ++ ..||.++...|+.+++.++.+|...+...|++.||++|+++||.++++.++.|..+
T Consensus 26 Kaal~y~V~rIv---ke~g-aer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L~~~ 101 (113)
T 4dra_A 26 KAAVHYTVGCLC---EEVA-LDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKY 101 (113)
T ss_dssp HHHHHHHHHHHH---HHHH-HHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHH---HHHH-HHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHHHHH
Confidence 455667776654 4433 22 24999999999999999999999999999999999999999999999999999998
Q ss_pred hhc
Q 032658 112 IKG 114 (136)
Q Consensus 112 f~~ 114 (136)
++.
T Consensus 102 l~~ 104 (113)
T 4dra_A 102 ITD 104 (113)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 29
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.40 E-value=8.8e-07 Score=59.80 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=59.5
Q ss_pred cccchhhhhhhhhhc-----cccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 37 IQFPVGRIHRHLKSR-----IAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 37 L~fPVsrv~R~Lk~~-----~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
|.+|..++.|++++- + . .|++++|...|.-+.|.+..++.|.+...|.|.++.+|+|+||++|.+
T Consensus 2 lli~k~PF~RLVRei~~~~~~-~-~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 2 ALIRKLPFQRLVREIAQDFKT-D-LRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CCSCHHHHHHHHHHHHHTTCS-S-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHcCc-c-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 568888899998887 4 2 499999999999999999999999999999999999999999999976
No 30
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.39 E-value=8e-07 Score=61.61 Aligned_cols=78 Identities=12% Similarity=0.029 Sum_probs=64.9
Q ss_pred ccCcccchhhhhhhh-hhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhh
Q 032658 34 RAGIQFPVGRIHRHL-KSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLI 112 (136)
Q Consensus 34 ragL~fPVsrv~R~L-k~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf 112 (136)
++-|.+-|++|-.=. +..+ ..||..+...|+.+++..+.+|.+.+...|+|.||++|+++||.++++.++.|..++
T Consensus 11 Kaal~~~V~ki~~e~~~~~g---~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l 87 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSED---IKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDLQERV 87 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC---ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHHHHHh
Confidence 345667777664333 3222 369999999999999999999999999999999999999999999999999999987
Q ss_pred hc
Q 032658 113 KG 114 (136)
Q Consensus 113 ~~ 114 (136)
.+
T Consensus 88 ~~ 89 (90)
T 3v9r_A 88 TQ 89 (90)
T ss_dssp CC
T ss_pred hc
Confidence 53
No 31
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=98.32 E-value=1.4e-06 Score=59.40 Aligned_cols=66 Identities=18% Similarity=0.057 Sum_probs=59.3
Q ss_pred cccchhhhhhhhhhcc------ccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 37 IQFPVGRIHRHLKSRI------AAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 37 L~fPVsrv~R~Lk~~~------~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
|.+|..++.|++++-. .. .|++++|...|.-+.|.+..+++|.+...|.|.++.+|.|+||++|.+
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~-~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVD-FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCcc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 4578888888888765 23 499999999999999999999999999999999999999999999976
No 32
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.30 E-value=1.2e-06 Score=62.47 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=64.8
Q ss_pred ccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhh
Q 032658 34 RAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 113 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~ 113 (136)
++-|.+-|++|-+-.-... .. |++..+...|+.+++.++.+|...+...|+|.||++|+++||.++++.++.|...+.
T Consensus 18 Kaal~~~V~rI~~~~g~~~-~~-~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 18 RAAVHYTTGCLCQDVAEDK-GV-LFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhc-CC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 3456666666544332211 13 899999999999999999999999999999999999999999999999999988876
Q ss_pred c
Q 032658 114 G 114 (136)
Q Consensus 114 ~ 114 (136)
.
T Consensus 96 ~ 96 (107)
T 3b0b_B 96 Q 96 (107)
T ss_dssp H
T ss_pred H
Confidence 4
No 33
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.28 E-value=1.8e-06 Score=64.23 Aligned_cols=69 Identities=17% Similarity=0.050 Sum_probs=61.9
Q ss_pred ccCcccchhhhhhhhhhcc------ccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 34 RAGIQFPVGRIHRHLKSRI------AAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~------~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
-.+|.+|...|.|++++-. .. .|++++|...|.-+.|.++.+++|.+...|.|.++.+|+|+||++|.+
T Consensus 57 st~LLIpKlPF~RLVREI~~~~~~~~~-~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 57 STHLLIRKLPFSRLAREICVKFTRGVD-FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHTTCC-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccccc-ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 4678999999999998865 23 499999999999999999999999999999999999999999999976
No 34
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.25 E-value=1.6e-06 Score=65.42 Aligned_cols=70 Identities=17% Similarity=0.028 Sum_probs=62.4
Q ss_pred ccCcccchhhhhhhhhhcc------ccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 34 RAGIQFPVGRIHRHLKSRI------AAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~------~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
-.+|.+|...|.|++++-. .. .|++++|...|.-+.|.++.+++|.|...|.+.++.+|+|+||++|.+-
T Consensus 73 SteLLIpKlPF~RLVREIa~~~~~~~~-lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrI 148 (156)
T 3r45_A 73 STHLLIRKLPFSRLAREICVKFTRGVD-FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRI 148 (156)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTTTTCC-CEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccCcc-ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHH
Confidence 4678999999999998865 23 4999999999999999999999999999999999999999999999874
No 35
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.22 E-value=2.1e-06 Score=63.78 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=66.9
Q ss_pred ccCcccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhh
Q 032658 34 RAGIQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 113 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~ 113 (136)
++-|++-|++|-.-.-.... ..||.++...|+.+++.++.+|...+...|+|.||++|+++||.++++.++.|..++.
T Consensus 18 KaAl~y~VgkIvee~~~~~~--~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~ 95 (140)
T 3vh5_A 18 RAAVHYTTGALAQDVAEDKG--VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHH
Confidence 45677777777543322221 3799999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 032658 114 G 114 (136)
Q Consensus 114 ~ 114 (136)
.
T Consensus 96 ~ 96 (140)
T 3vh5_A 96 Q 96 (140)
T ss_dssp H
T ss_pred H
Confidence 5
No 36
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.15 E-value=4.3e-06 Score=58.93 Aligned_cols=70 Identities=20% Similarity=0.100 Sum_probs=58.9
Q ss_pred ccCcccchhhhhhhhhhcccc------ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 34 RAGIQFPVGRIHRHLKSRIAA------HGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~~a------~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
-.+|.+|..++.|++++-... ..|++++|...|.-+.|.++.+++|.+...|.|.++.+|.|+||++|.+
T Consensus 23 st~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 23 STDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp -----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 357889999999999886520 2499999999999999999999999999999999999999999999975
No 37
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.13 E-value=6.7e-06 Score=60.85 Aligned_cols=67 Identities=19% Similarity=0.164 Sum_probs=61.9
Q ss_pred cCcccchhhhhhhhhhc-----cccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 35 AGIQFPVGRIHRHLKSR-----IAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 35 agL~fPVsrv~R~Lk~~-----~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.+|.+|...|.|++++- . . +|++++|...|.-+.|.++.+++|.+...|.|.++.+|.|+||++|.+
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~-~-~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKT-D-LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCT-T-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhh-h-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 57889999999999887 4 2 599999999999999999999999999999999999999999999975
No 38
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.06 E-value=1.1e-05 Score=59.04 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=59.1
Q ss_pred cccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 37 IQFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 37 L~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
-.|.+ .|+|+|++-... .+||+.|.-.|...+++++..|...|...|+.+++++|++++|+.|++
T Consensus 36 esy~~-YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 36 ESYSI-YVYKVLKQVHPD-TGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp CCCHH-HHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccHHH-HHHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 34665 799999998754 489999999999999999999999999999999999999999999996
No 39
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.05 E-value=5.3e-06 Score=66.27 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=55.0
Q ss_pred hhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 44 IHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 44 v~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
+.|+.+.++. + |||.++-..+..+||.+..+|+..|...|.++++|+|+++||.+|++
T Consensus 167 ~~RlaRrgGV-k-RIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALK 224 (235)
T 2l5a_A 167 DEEDGDKGGV-K-RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 224 (235)
T ss_dssp CCTTSCCTTC-C-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHH
T ss_pred HHHHhhcCCc-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 5689999984 7 99999999999999999999999999999999999999999999987
No 40
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.00 E-value=1.4e-05 Score=58.17 Aligned_cols=63 Identities=21% Similarity=0.190 Sum_probs=57.6
Q ss_pred cchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 39 FPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 39 fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
|. ..|+|+|++-... .+||+.|.-.|...+++++..|...|...|+.+++++|++++|+.|++
T Consensus 35 y~-~YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 35 YA-IYIYTVLKQVHPD-TGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp SH-HHHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HH-HHHHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 44 4689999998754 489999999999999999999999999999999999999999999996
No 41
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.95 E-value=1.9e-05 Score=57.37 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=48.6
Q ss_pred hccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 50 SRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 50 ~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.++ ++ |||.++-..+..+||.+..+|+..|...+.+.++|+|+.+||.+|++
T Consensus 59 ~gG-vk-RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alk 110 (121)
T 2ly8_A 59 PRG-SK-RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALK 110 (121)
T ss_dssp CCC-SS-CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHH
T ss_pred ccC-cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHH
Confidence 344 46 99999999999999999999999999999999999999999999986
No 42
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.50 E-value=0.00022 Score=54.93 Aligned_cols=61 Identities=20% Similarity=0.208 Sum_probs=56.3
Q ss_pred hhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 42 GRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 42 srv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
..|+|+|++..... .||+.|..+|...++.++..|...|...+..+++++||++||+.|++
T Consensus 7 ~yi~kvLkqv~p~~-~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPDT-GISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 36899999987544 89999999999999999999999999999999999999999999997
No 43
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=96.68 E-value=0.0055 Score=41.99 Aligned_cols=64 Identities=23% Similarity=0.402 Sum_probs=54.4
Q ss_pred ccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHh-cCCceechhhHHHHhh
Q 032658 38 QFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKD-LKVKRITPRHLQLAIR 103 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~-~~~krItp~hI~~AI~ 103 (136)
.||-..|+|+++.-. .. .|+.+..+.|+++--.++.||+|.|...... .....|.|.||+.|.+
T Consensus 16 ~f~k~~vKrl~~~~~-~~-~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~r 80 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT-GT-SVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVR 80 (89)
T ss_dssp CCCHHHHHHHHHHHH-SS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc-CC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Confidence 477778999998765 34 8999999999999999999999999887654 4566899999999975
No 44
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=96.66 E-value=0.0084 Score=40.82 Aligned_cols=69 Identities=16% Similarity=0.200 Sum_probs=57.7
Q ss_pred ccCcccchhhhhhhhhhccc-cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHh
Q 032658 34 RAGIQFPVGRIHRHLKSRIA-AHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 102 (136)
Q Consensus 34 ragL~fPVsrv~R~Lk~~~~-a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI 102 (136)
.++..||..-|.|+|+..-- ...||+.+|..-++..|+.|+.|.+-+|...|...+...|..+|++...
T Consensus 8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 45678999999999985432 1359999999999999999999999999999988888889999998753
No 45
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=96.40 E-value=0.014 Score=39.41 Aligned_cols=67 Identities=16% Similarity=0.271 Sum_probs=57.6
Q ss_pred Ccccchhhhhhhhhhcccc-ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHh
Q 032658 36 GIQFPVGRIHRHLKSRIAA-HGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 102 (136)
Q Consensus 36 gL~fPVsrv~R~Lk~~~~a-~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI 102 (136)
...||..-|.|+|+..--. .-||+++|..-++..|+.|+.|.+.+|...|...+...|..+|++...
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~ 73 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVL 73 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHH
Confidence 4579999999999874321 259999999999999999999999999999988888899999999843
No 46
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.30 E-value=0.093 Score=34.90 Aligned_cols=66 Identities=11% Similarity=0.164 Sum_probs=58.0
Q ss_pred ccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 38 QFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
.++-.++..++++-.... .+..++-..|..+.+-|+..+++.|+..|++.+..++.++||++..+.
T Consensus 5 vl~k~~L~~Lv~~idp~~-~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 5 VLTKKKLQDLVREVDPNE-QLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp SSCHHHHHHHHHHHCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred cccHHHHHHHHHhcCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 466778888888765444 899999999999999999999999999999999999999999988763
No 47
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=94.75 E-value=0.048 Score=43.41 Aligned_cols=67 Identities=19% Similarity=0.079 Sum_probs=53.9
Q ss_pred Ccccchhhhhhhhhhccc------cccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHh
Q 032658 36 GIQFPVGRIHRHLKSRIA------AHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAI 102 (136)
Q Consensus 36 gL~fPVsrv~R~Lk~~~~------a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI 102 (136)
.|.+|-.++.|+.++-.. ..+|..++|...|--+-|.++-.++|.+.--|.|.++-+|.|.||++|-
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLar 81 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLAR 81 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHH
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHH
Confidence 456666667776654321 0258999999999999999999999999999999999999999999984
No 48
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=90.76 E-value=0.75 Score=34.15 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=53.2
Q ss_pred ccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHH
Q 032658 38 QFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQ 99 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~ 99 (136)
.+++.+++|+++.... .-|..+-.--+..++|-=+.+++..|-..|+.+|+.-|.|.|+-
T Consensus 2 vm~~~~~e~lFR~aa~--LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLP 61 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAG--LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLP 61 (148)
T ss_dssp CSCHHHHHHHHHHHHC--CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSC
T ss_pred cCCHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCC
Confidence 4788999999999864 36888888888999999999999999999999999999999874
No 49
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=90.32 E-value=0.42 Score=33.22 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 113 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~ 113 (136)
+.++++.|-+.|...+...|+|+|+-+|+-.|++...+|.
T Consensus 6 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~ 45 (143)
T 1k6k_A 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (143)
T ss_dssp HHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHH
Confidence 4578899999999999999999999999988877666654
No 50
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=84.54 E-value=0.81 Score=31.98 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChH--HHhhhh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDTLIK 113 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E--L~~Lf~ 113 (136)
+.++++.|-+.|...+...|+|+|+-+|+-.+++ ...++.
T Consensus 10 ~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (150)
T 2y1q_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHH
Confidence 3577889999999999999999999999975543 444443
No 51
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=83.93 E-value=1.1 Score=31.04 Aligned_cols=33 Identities=24% Similarity=0.142 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCCh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 106 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~ 106 (136)
+.++++.|-..|...+...|+|+|+-+|+-.++
T Consensus 10 ~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 10 FQLALADAQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 357889999999999999999999999997765
No 52
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=83.50 E-value=1.3 Score=33.59 Aligned_cols=61 Identities=7% Similarity=0.006 Sum_probs=54.1
Q ss_pred ccchhhhhhhhhhccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHH
Q 032658 38 QFPVGRIHRHLKSRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL 100 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~ 100 (136)
.+++.+++|+++.... .-|..+-.--+..++|-=+.+++..|-..|+.++|.-|.|.|+-.
T Consensus 26 vmg~~kferlFR~aag--LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPI 86 (171)
T 1r4v_A 26 PKGFDKLDHYFRTELD--IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNI 86 (171)
T ss_dssp CTTHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCC
T ss_pred cCChHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCc
Confidence 7899999999999864 368888888888999999999999999999999999999998743
No 53
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=83.09 E-value=0.77 Score=32.37 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCCh--HHHhhhh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDTLIK 113 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~--EL~~Lf~ 113 (136)
+.++++.|.++|...+...|+|+||-+|+-.|+ ....++.
T Consensus 12 a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 53 (145)
T 3fes_A 12 AKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLS 53 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHH
Confidence 357889999999999999999999999997654 3444443
No 54
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=83.05 E-value=1.1 Score=31.44 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCC--hHHHhhhh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGD--EELDTLIK 113 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD--~EL~~Lf~ 113 (136)
+.++++.|.++|...+...|+|+||-+|+-.| .....++.
T Consensus 11 ~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 52 (146)
T 3fh2_A 11 ARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALE 52 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHH
Confidence 35788999999999999999999999999765 34444443
No 55
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=79.64 E-value=1.4 Score=30.99 Aligned_cols=41 Identities=29% Similarity=0.455 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChH--HHhhhhc
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDTLIKG 114 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E--L~~Lf~~ 114 (136)
+..+|+.|..+|...+...|+++||-+|+-.|++ ...+|..
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~ 128 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNY 128 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHH
Confidence 4577899999999999999999999999975543 5556643
No 56
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=78.90 E-value=1.9 Score=30.25 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCceechhhHHHHhhCCh--HHHhhhhc
Q 032658 75 AEVLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDTLIKG 114 (136)
Q Consensus 75 ~EILelAg~~A~~~~~krItp~hI~~AI~nD~--EL~~Lf~~ 114 (136)
.++|+.|...|...+...|+++||-+|+-.|+ ....+|..
T Consensus 87 ~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~ 128 (146)
T 3fh2_A 87 KKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVK 128 (146)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHH
Confidence 57888999999999999999999999997544 45666653
No 57
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=78.52 E-value=2 Score=31.70 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChH--HHhhhh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDTLIK 113 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E--L~~Lf~ 113 (136)
+.++++.|.++|...+...|.|+||-+|+-.|++ ...++.
T Consensus 29 a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~ 70 (171)
T 3zri_A 29 SKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLK 70 (171)
T ss_dssp HHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHH
Confidence 3567899999999999999999999999987653 444443
No 58
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=72.85 E-value=5.4 Score=27.43 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhC-ChHHHhhhh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRG-DEELDTLIK 113 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~n-D~EL~~Lf~ 113 (136)
+..+++.|..+|...+...|+++||-+|+-. |.....++.
T Consensus 87 ~~~vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~ 127 (148)
T 1khy_A 87 LVRVLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (148)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHH
Confidence 4567899999999889999999999999984 334445554
No 59
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=72.61 E-value=3.8 Score=28.16 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChH--HHhhhh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDTLIK 113 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E--L~~Lf~ 113 (136)
+..+|+.|..+|...+...|.++||-+|+-.|++ ...++.
T Consensus 84 ~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~ 125 (143)
T 1k6k_A 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLR 125 (143)
T ss_dssp HHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHH
Confidence 4578899999999999999999999999986653 344443
No 60
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=70.81 E-value=4.2 Score=29.93 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHH-hcCCceechhhHHHHhhCCh
Q 032658 75 AEVLELAGNASK-DLKVKRITPRHLQLAIRGDE 106 (136)
Q Consensus 75 ~EILelAg~~A~-~~~~krItp~hI~~AI~nD~ 106 (136)
.++|+.|..+|. ..+...|..+||-+|+-.|+
T Consensus 104 ~~vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 104 VELLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 477999999999 99999999999999998777
No 61
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=67.34 E-value=7.5 Score=34.06 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 113 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~ 113 (136)
+.++|+.|-++|...+...|+|+||-+|+-.|++...++.
T Consensus 6 a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 6 LELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 4578899999999999999999999999998887766664
No 62
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=66.15 E-value=23 Score=23.99 Aligned_cols=49 Identities=10% Similarity=0.139 Sum_probs=38.2
Q ss_pred cchhhhhhhhhhcccc-ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032658 39 FPVGRIHRHLKSRIAA-HGRVGATAAVYLASILEYLTAEVLELAGNASKD 87 (136)
Q Consensus 39 fPVsrv~R~Lk~~~~a-~~RVs~~A~VyLaAvLEyL~~EILelAg~~A~~ 87 (136)
+|..-+-|+|....-. .-||+.+|...++..++-|+.|-+-+|......
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~ 51 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKD 51 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677788888743221 259999999999999999999999999765544
No 63
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=63.93 E-value=4.2 Score=28.14 Aligned_cols=33 Identities=18% Similarity=0.345 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCCh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 106 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~ 106 (136)
+..+++.|..+|...+...|.++||-+|+-.|+
T Consensus 84 ~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 456788999999999999999999999997544
No 64
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=56.88 E-value=37 Score=26.24 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=36.4
Q ss_pred ccCcchHHHHHHHHH-H---HHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 57 RVGATAAVYLASILE-Y---LTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 57 RVs~~A~VyLaAvLE-y---L~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
.++.++.-+|+...+ . .+..+++.|...|...++..|+.+|++.++..
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 578888777777666 2 23456777777777788899999999999874
No 65
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=56.52 E-value=31 Score=25.78 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhhc
Q 032658 68 SILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 114 (136)
Q Consensus 68 AvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~~ 114 (136)
+.+. .+.++++.-...-+..|.+-|+|-++..-|..|.|-..+|..
T Consensus 71 ~y~~-kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a~ 116 (165)
T 2vxz_A 71 QYRQ-LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFSS 116 (165)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHHT
T ss_pred HHHH-HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHHH
Confidence 3344 677888877777788899999999999999999999999986
No 66
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=54.76 E-value=43 Score=25.57 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=44.3
Q ss_pred hhhhhhhhhhcc---ccccccCcchHHHHHHHHH------HHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 41 VGRIHRHLKSRI---AAHGRVGATAAVYLASILE------YLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 41 Vsrv~R~Lk~~~---~a~~RVs~~A~VyLaAvLE------yL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
...+..+++..- .....++.++.-+++.... ..+..+++.|...|...+...|+.+|++.++.
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 345555554321 0112577888888877776 45568888888888877888999999998875
No 67
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=53.28 E-value=19 Score=22.27 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=17.5
Q ss_pred HHHHHHHhcCCceechhhHHHHhh
Q 032658 80 LAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 80 lAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.|...|-..+...|+.+|+..|+.
T Consensus 48 eA~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 48 EAGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHH
Confidence 334444455778899999999985
No 68
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=49.68 E-value=36 Score=25.93 Aligned_cols=47 Identities=15% Similarity=-0.021 Sum_probs=34.6
Q ss_pred ccCcchHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 57 RVGATAAVYLASILEY-------LTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 57 RVs~~A~VyLaAvLEy-------L~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.++.++.-||+....- -+..+++.|...|...++..|+++|+..|+.
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 5777777777655443 1346677778888878888999999998875
No 69
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=46.74 E-value=13 Score=30.85 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCCh--HHHhhh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDTLI 112 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~--EL~~Lf 112 (136)
+.++|+.|-..|...+...|+|+|+-+++-.++ ....++
T Consensus 10 a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL 50 (468)
T 3pxg_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (468)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 457788999999999999999999999997653 344444
No 70
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=45.59 E-value=31 Score=21.63 Aligned_cols=43 Identities=12% Similarity=-0.053 Sum_probs=26.4
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 58 VGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 58 Vs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
|...+.=|-.|=|+.++.|-...| -..++..|+.+|+..|+..
T Consensus 25 lA~~t~G~SGADi~~l~~eAa~~a----i~~~~~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 25 LIIRNDSLSGAVIAAIMQEAGLRA----VRKNRYVILQSDLEEAYAT 67 (82)
T ss_dssp TTTSSCCCCHHHHHHHHHHHHHHH----HHTTCSEECHHHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHH----HHhccCCcCHHHHHHHHHH
Confidence 444444455555666655544333 3446678999999998863
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=45.50 E-value=62 Score=24.58 Aligned_cols=48 Identities=10% Similarity=0.176 Sum_probs=36.1
Q ss_pred ccCcchHHHHHHHHH------HHHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 57 RVGATAAVYLASILE------YLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 57 RVs~~A~VyLaAvLE------yL~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
.++.++.-+++.... ..+.++++.+...|...+...|+.+|++.|+..
T Consensus 218 ~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~ 271 (386)
T 2qby_A 218 VLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEE 271 (386)
T ss_dssp CSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 577778777777665 234457788887787778889999999988763
No 72
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=42.66 E-value=15 Score=30.57 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
+.++|+.|..+|...+...|.++||-+|+-.|++
T Consensus 84 ~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 3567889999999899999999999999986654
No 73
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=42.46 E-value=62 Score=28.12 Aligned_cols=66 Identities=17% Similarity=0.092 Sum_probs=45.2
Q ss_pred ccchhhhhhhhhhcc--ccccccCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHhcCCceec
Q 032658 38 QFPVGRIHRHLKSRI--AAHGRVGATAAVYLASILEYLTA---------------------EVLELAGNASKDLKVKRIT 94 (136)
Q Consensus 38 ~fPVsrv~R~Lk~~~--~a~~RVs~~A~VyLaAvLEyL~~---------------------EILelAg~~A~~~~~krIt 94 (136)
.++...+.+++...+ +...+++..+.-|+......+=. -++.+|-..|+-.++..++
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 456666666665443 11237888888888765444311 2566777778889999999
Q ss_pred hhhHHHHhh
Q 032658 95 PRHLQLAIR 103 (136)
Q Consensus 95 p~hI~~AI~ 103 (136)
|+|++.|++
T Consensus 473 ~eDV~~Ai~ 481 (506)
T 3f8t_A 473 PEDVDIAAE 481 (506)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999997
No 74
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=41.63 E-value=17 Score=31.92 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCCh--HHHhhh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDTLI 112 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~--EL~~Lf 112 (136)
+.++++.|-++|...+...|+|+||-+|+-.++ ....++
T Consensus 10 a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL 50 (758)
T 3pxi_A 10 AQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (758)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 356788999999999999999999999997553 344444
No 75
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=38.12 E-value=84 Score=26.85 Aligned_cols=30 Identities=13% Similarity=0.172 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 75 AEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 75 ~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
..+++.|...|...++..|+++||+.|+..
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 357888888888889999999999999964
No 76
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=36.31 E-value=28 Score=31.12 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
+.++|+.|-..|...+...|+|+|+-+|+-.+++
T Consensus 10 a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~ 43 (854)
T 1qvr_A 10 AREALAQAQVLAQRMKHQAIDLPHLWAVLLKDER 43 (854)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSS
T ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCC
Confidence 3567889999999999999999999999976653
No 77
>2v6z_M DNA polymerase epsilon subunit 2; DNA replication, DPOE2, transferase, AAA protein family; HET: DNA; NMR {Homo sapiens}
Probab=35.71 E-value=32 Score=23.54 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=40.4
Q ss_pred ccccCcccch------hhhhhhhhhccccccccCcchHHHHHHHHHHHHH----HHHHHHHHHHHhc--CCceechhhHH
Q 032658 32 SSRAGIQFPV------GRIHRHLKSRIAAHGRVGATAAVYLASILEYLTA----EVLELAGNASKDL--KVKRITPRHLQ 99 (136)
Q Consensus 32 SsragL~fPV------srv~R~Lk~~~~a~~RVs~~A~VyLaAvLEyL~~----EILelAg~~A~~~--~~krItp~hI~ 99 (136)
|+-+-||+-. .+|.+.++-.++ -+..+|..||+.+|+-+-. +.|+.-....... ....|.-++|+
T Consensus 16 ~~~~~~~~~M~~~rlrk~I~k~FKL~Gl---~Lr~dA~~~L~~~L~~~~~~e~e~~L~~Iid~lqkq~LsS~~Vdk~~VE 92 (99)
T 2v6z_M 16 SSSARLQVDMAPERLRSRALSAFKLRGL---LLRGEAIKYLTEALQSISELELEDKLEKIINAVEKQPLSSNMIERSVVE 92 (99)
T ss_dssp ---------CCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHHTTTSCTTTHHHHHHHHHHHHTTSCCSSSEECHHHHH
T ss_pred ccchhhhhcccHHHHHHHHHHHhhhcce---eecHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcCccccccHHHHH
Confidence 3445566653 355555666664 5889999999988866643 4555555544433 46678899999
Q ss_pred HHhh
Q 032658 100 LAIR 103 (136)
Q Consensus 100 ~AI~ 103 (136)
.||+
T Consensus 93 ~AVk 96 (99)
T 2v6z_M 93 AAVQ 96 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9986
No 78
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=34.20 E-value=38 Score=21.07 Aligned_cols=21 Identities=5% Similarity=-0.023 Sum_probs=15.2
Q ss_pred HHHHhcCCceechhhHHHHhh
Q 032658 83 NASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 83 ~~A~~~~~krItp~hI~~AI~ 103 (136)
..|-..+...|+.+|+..|+.
T Consensus 49 ~~a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 49 MLAVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp HGGGTSCCSSBCHHHHHHHHH
T ss_pred HHHHHhccCCcCHHHHHHHHH
Confidence 334445567899999998875
No 79
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=33.81 E-value=42 Score=24.68 Aligned_cols=27 Identities=7% Similarity=-0.031 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 77 VLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 77 ILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
+++.|...|...++..|+.+|++.|+.
T Consensus 224 l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 224 LVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 344555556666778999999999885
No 80
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=32.83 E-value=25 Score=30.82 Aligned_cols=34 Identities=21% Similarity=0.370 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
+.++|+.|..+|...+...|.++||-+|+-.|++
T Consensus 84 ~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 3pxi_A 84 AKKVIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (758)
T ss_dssp HHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCC
Confidence 3567899999999999999999999999986654
No 81
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=32.73 E-value=61 Score=20.72 Aligned_cols=18 Identities=11% Similarity=0.224 Sum_probs=14.0
Q ss_pred HhcCCceechhhHHHHhh
Q 032658 86 KDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 86 ~~~~~krItp~hI~~AI~ 103 (136)
-......|+.+|+..|+.
T Consensus 62 lr~~~~~I~~~df~~Al~ 79 (86)
T 2krk_A 62 LRERRVHVTQEDFEMAVA 79 (86)
T ss_dssp HHTTCSEECHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHH
Confidence 334567899999999885
No 82
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=32.33 E-value=34 Score=29.84 Aligned_cols=34 Identities=21% Similarity=0.152 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChH
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEE 107 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~E 107 (136)
+..+|+.|..+|...+...|.++||-+|+-.+++
T Consensus 84 ~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~ 117 (758)
T 1r6b_X 84 FQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQE 117 (758)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHcCCCEeeHHHHHHHHhcccc
Confidence 4568899999999889999999999999987654
No 83
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate cyclase activating protein, GCAP1, GCAP-1, calcium, lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Probab=31.88 E-value=90 Score=21.52 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhhc
Q 032658 75 AEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 114 (136)
Q Consensus 75 ~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~~ 114 (136)
.+.++.+......++...|+.+++...+.+++++..++..
T Consensus 130 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~ 169 (198)
T 2r2i_A 130 EEFTNMVFDKIDINGDGELSLEEFMEGVQKDEVLLDILTR 169 (198)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHTTCHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHcCHHHHHHHhc
Confidence 4556666677777788899999999999999999999873
No 84
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=31.19 E-value=51 Score=21.03 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=14.3
Q ss_pred HHhcCCceechhhHHHHhh
Q 032658 85 SKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 85 A~~~~~krItp~hI~~AI~ 103 (136)
|-..+...|+.+|+..|+.
T Consensus 51 a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 51 AIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp HHHHSCSSBCHHHHHHHHH
T ss_pred HHHhccccCCHHHHHHHHH
Confidence 3334567899999999985
No 85
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=30.69 E-value=1.2e+02 Score=21.72 Aligned_cols=49 Identities=8% Similarity=-0.065 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhhc-cccCCCccCC
Q 032658 76 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPH 124 (136)
Q Consensus 76 EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~~-~ia~ggv~p~ 124 (136)
+.++........++...|+-++....+.+++.+...|+- ....+-+.|+
T Consensus 173 ~~~~~~f~~~D~d~dG~Is~~EF~~~~~~~~~l~~~l~~~~~~~~~~~~~ 222 (224)
T 1s1e_A 173 QHVDVFFQKMDKNKDGIVTLDEFLESCQEDDNIMRSLQLFQNVMVEHHHH 222 (224)
T ss_dssp HHHHHHHHHHCTTCSSCEEHHHHHHHHHTCHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHhCHHHHHHhcCCCCCCCccccc
Confidence 556666666667788899999999999999999888875 4444434443
No 86
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=29.76 E-value=1.1e+02 Score=21.22 Aligned_cols=41 Identities=10% Similarity=0.024 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhhc
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 114 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~~ 114 (136)
..+.++........++...|+.+++...+.+++++..++..
T Consensus 146 ~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~~~~~~~~~~~ 186 (204)
T 1jba_A 146 PEEVVDRIFLLVDENGDGQLSLNEFVEGARRDKWVMKMLQM 186 (204)
T ss_dssp HHHHHHHHHHHHCCSCCSCBCHHHHHHHHTTTTTHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCeEcHHHHHHHHHcChHHHHHHHh
Confidence 44566777777777788899999999999999999999974
No 87
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=29.50 E-value=55 Score=24.28 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 76 EVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 76 EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.++..|...|...++..|+.+|++.|+.
T Consensus 229 ~l~~~a~~~a~~~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 229 AICTEAGMNAIRELRDYVTMDDFRKAVE 256 (285)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCHHHHHHHHH
Confidence 3455566666677888999999999985
No 88
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=28.54 E-value=53 Score=24.60 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 77 VLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 77 ILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
+++.|...|...++..|+.+|++.|++
T Consensus 252 l~~~a~~~a~~~~~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 252 LLNEAALLAAREGRRKITMKDLEEAAS 278 (278)
T ss_dssp HHHHHHHHHHHTTCCSBCHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 355555555566677899999998863
No 89
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=28.42 E-value=55 Score=23.98 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCceechhhHHHHh
Q 032658 77 VLELAGNASKDLKVKRITPRHLQLAI 102 (136)
Q Consensus 77 ILelAg~~A~~~~~krItp~hI~~AI 102 (136)
+++.|...|...++..|+.+|++.|+
T Consensus 228 ~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 228 LLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 34455555556667789999999886
No 90
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=26.58 E-value=61 Score=22.79 Aligned_cols=47 Identities=15% Similarity=0.158 Sum_probs=28.3
Q ss_pred ccCcchHHHHHHHHHHHHH---HHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 57 RVGATAAVYLASILEYLTA---EVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 57 RVs~~A~VyLaAvLEyL~~---EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
.++..+.-+|+...+--.. .+++.+...|...+ +.|+.+||+.++.+
T Consensus 193 ~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~~ 242 (242)
T 3bos_A 193 QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLRL 242 (242)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhhC
Confidence 5777776666655442222 33444555554334 46999999988764
No 91
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=25.82 E-value=39 Score=25.13 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhhccccCCCccCCccccc
Q 032658 69 ILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSL 129 (136)
Q Consensus 69 vLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~~~ia~ggv~p~i~~~~ 129 (136)
--|.++..|+..+.+.+--.....++++++..+=.--..++++--..|+.++|-+.++...
T Consensus 32 eA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~~~fr~k~~~~amt~iSF~eVdfTfD~~~ 92 (161)
T 3f4m_A 32 QAQRVIKDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAV 92 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCCCHHH
T ss_pred HHHHHHHHHHHHHHHhheeeecCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCccccHHH
Confidence 4477889999999998877777889999999886533333333323678888888776543
No 92
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=25.74 E-value=1.9e+02 Score=22.05 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=37.9
Q ss_pred hhhhhhhhhc---cccccccCcchHHHHHHHHHH------HHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 42 GRIHRHLKSR---IAAHGRVGATAAVYLASILEY------LTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 42 srv~R~Lk~~---~~a~~RVs~~A~VyLaAvLEy------L~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
..+..+++.. ......++.++.-+++....+ .+-++++.|+..|. +...|+.+|+..++..
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 200 EQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVD 269 (384)
T ss_dssp HHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHH
Confidence 4555666542 111125677766666665541 23467777777775 6678999999988753
No 93
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=25.48 E-value=1.4e+02 Score=19.18 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCc-eechhhHHHHhhC-----------ChHHHhhhhc
Q 032658 70 LEYLTAEVLELAGNASKDLKVK-RITPRHLQLAIRG-----------DEELDTLIKG 114 (136)
Q Consensus 70 LEyL~~EILelAg~~A~~~~~k-rItp~hI~~AI~n-----------D~EL~~Lf~~ 114 (136)
||.-+.+|.+.--..+...|.. .|+.+.+...+.. ++++..+++.
T Consensus 6 le~~i~~l~~~F~~fd~~dgdgG~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~ 62 (98)
T 3n22_A 6 LEQALAVLVTTFHKYSSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGS 62 (98)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSTTSBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHH
Confidence 4555555555444445345554 8999999988863 5678888765
No 94
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase activating protein, GCAP, GCAP3, GCAP-3, lyase activator; 3.00A {Homo sapiens}
Probab=25.31 E-value=1.1e+02 Score=21.59 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhh
Q 032658 75 AEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIK 113 (136)
Q Consensus 75 ~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~ 113 (136)
.+.++.....+..++...|+-+++...+.+++++..+|.
T Consensus 134 ~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~ 172 (211)
T 2ggz_A 134 EEFINLVFHKIDINNDGELTLEEFINGMAKDQDLLEIVY 172 (211)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHTTTTTHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHhCHHHHHHHh
Confidence 456677777777778889999999999999999988887
No 95
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=23.69 E-value=59 Score=26.62 Aligned_cols=64 Identities=16% Similarity=0.059 Sum_probs=41.8
Q ss_pred hhhhhhhhhhcccc-ccccCcchHHHHHHHH-HH---HHHHHHHHHHHHHHhcCCceechhhHHHHhhC
Q 032658 41 VGRIHRHLKSRIAA-HGRVGATAAVYLASIL-EY---LTAEVLELAGNASKDLKVKRITPRHLQLAIRG 104 (136)
Q Consensus 41 Vsrv~R~Lk~~~~a-~~RVs~~A~VyLaAvL-Ey---L~~EILelAg~~A~~~~~krItp~hI~~AI~n 104 (136)
...+..+|+..... ...++.++.-+++..- +- ..-.+++.|...|...++..|+++||+.++.-
T Consensus 368 ~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 368 PQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 35566666542100 1246777766666644 21 34556777877888889999999999999863
No 96
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=23.09 E-value=1.4e+02 Score=20.15 Aligned_cols=45 Identities=7% Similarity=-0.087 Sum_probs=24.4
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 57 RVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 57 RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.++..+..+|.....--..+++...-..+... ..|+.+||+.++.
T Consensus 180 ~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 180 KITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 35665555555443333333333333333332 5899999998875
No 97
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=22.19 E-value=88 Score=23.85 Aligned_cols=28 Identities=7% Similarity=-0.007 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 76 EVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 76 EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.++..|...|.-.++..|+++|++.++.
T Consensus 268 ~ll~~a~a~A~l~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVLPEDIKEVAY 295 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 3566677777788898999999998875
No 98
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=22.12 E-value=1.2e+02 Score=20.72 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=24.3
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 57 RVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 57 RVs~~A~VyLaAvLEyL~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
.++..+..+|+...+-...++..++-..+. .+...|+.+||+.++.
T Consensus 204 ~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~-~~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 204 AHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLG 249 (250)
T ss_dssp CBCHHHHHHHHHHHTTCHHHHHHHHHHHHT-TTTSSBCHHHHHHHSC
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHh-ccCceecHHHHHHHhC
Confidence 355555545544444344444444333332 2344799999888763
No 99
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=21.54 E-value=22 Score=24.17 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhcCCceechhhHHHHhh
Q 032658 74 TAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
Q Consensus 74 ~~EILelAg~~A~~~~~krItp~hI~~AI~ 103 (136)
+...|.+|...|.-++.. |+..||+.|-.
T Consensus 49 ltktLrLA~m~A~G~g~~-i~~~~I~~A~~ 77 (91)
T 1f6v_A 49 LNHSLRLAAMTAHGKGER-VNEDYLRQAFR 77 (91)
T ss_dssp HHHHHGGGTCTTCTTSCC-SSHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCc-CCHHHHHHHHH
Confidence 345567787777776665 99999999987
No 100
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=20.97 E-value=2e+02 Score=19.30 Aligned_cols=42 Identities=7% Similarity=-0.118 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhcCCceechhhHHHHhhCChHHHhhhhc
Q 032658 73 LTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG 114 (136)
Q Consensus 73 L~~EILelAg~~A~~~~~krItp~hI~~AI~nD~EL~~Lf~~ 114 (136)
+..+.++.+......++...|+.+++...+.+++.+..+|..
T Consensus 144 ~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~~~~~~~~~~~~ 185 (190)
T 1fpw_A 144 TPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDPSIIGALNL 185 (190)
T ss_dssp CHHHHHHHHHHHHTTTCSSEEEHHHHHHHHHSSTTHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHhChHHHHHHhh
Confidence 445666777777777788899999999999999998888763
Done!