BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 032659
(136 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q943Z6|SRP19_ARATH Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana
GN=SRP19 PE=2 SV=1
Length = 145
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 84/111 (75%), Positives = 97/111 (87%)
Query: 1 MDAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEI 60
MD+ T IKKWV++YPVYINSKKT+AEGRRIS SK+CENP CIEI+DCC++LK+P A+EI
Sbjct: 1 MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60
Query: 61 DKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRT 111
DKAYPRDFMQ GRVRV LKREDGT +NPAI+SRK LM +AELVPRHP R
Sbjct: 61 DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERV 111
>sp|P49964|SRP19_ORYSJ Signal recognition particle 19 kDa protein OS=Oryza sativa subsp.
japonica GN=SRP19 PE=1 SV=1
Length = 136
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/128 (68%), Positives = 107/128 (83%), Gaps = 3/128 (2%)
Query: 1 MDAQTAR--IKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAI 58
MD R IKKW ++YPVY+NSKKT+AEGRRI++ KAC +PTC+EIADCC +LKIPHAI
Sbjct: 1 MDGGDLRSSIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAI 60
Query: 59 EIDKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPAS 118
E+DKAYPRDF Q GRVRV LK++DG+ VNPAI ++KQLM+ +AELVP+H RTKKQEPA+
Sbjct: 61 ELDKAYPRDFFQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQEPAA 120
Query: 119 TSSNAGPS 126
SS AG S
Sbjct: 121 -SSTAGTS 127
>sp|Q9D7A6|SRP19_MOUSE Signal recognition particle 19 kDa protein OS=Mus musculus GN=Srp19
PE=2 SV=1
Length = 144
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 71/108 (65%), Gaps = 4/108 (3%)
Query: 10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP---- 65
+++ +YP Y+N+KKTIAEGRRI SKA ENPT EI D C + + +E +K Y
Sbjct: 14 RFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73
Query: 66 RDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKK 113
RD RGRVRV LK+EDG+ SRK +ML+VAE++P+ RT+K
Sbjct: 74 RDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQK 121
>sp|Q5RBR1|SRP19_PONAB Signal recognition particle 19 kDa protein OS=Pongo abelii GN=SRP19
PE=2 SV=2
Length = 144
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%), Gaps = 4/119 (3%)
Query: 10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP---- 65
+++ +YP Y+N+KKTIAEGRRI SKA ENPT EI D C + + +E +K Y
Sbjct: 14 RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73
Query: 66 RDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTSSNAG 124
RD RGRVRV LK+EDG+ SRK +ML+ AE++P+ RT+K A S G
Sbjct: 74 RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQG 132
>sp|P09132|SRP19_HUMAN Signal recognition particle 19 kDa protein OS=Homo sapiens GN=SRP19
PE=1 SV=3
Length = 144
Score = 105 bits (261), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%), Gaps = 4/119 (3%)
Query: 10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP---- 65
+++ +YP Y+N+KKTIAEGRRI SKA ENPT EI D C + + +E +K Y
Sbjct: 14 RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73
Query: 66 RDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTSSNAG 124
RD RGRVRV LK+EDG+ SRK +ML+ AE++P+ RT+K A S G
Sbjct: 74 RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQG 132
>sp|Q3ZBG7|SRP19_BOVIN Signal recognition particle 19 kDa protein OS=Bos taurus GN=SRP19
PE=2 SV=1
Length = 144
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 72/119 (60%), Gaps = 4/119 (3%)
Query: 10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP---- 65
+++ +YP Y+N+KKTIAEGRRI SKA ENPT EI D C + + +E +K Y
Sbjct: 14 RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCAAVGLNVFLEKNKMYSREWN 73
Query: 66 RDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTSSNAG 124
RD RGRVRV LK+EDG+ SRK +ML+ AE++P+ RT+K S G
Sbjct: 74 RDLQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGGDQSLQQG 132
>sp|O14415|SEC65_CANAX Signal recognition particle SEC65 subunit OS=Candida albicans
GN=SEC65 PE=3 SV=1
Length = 275
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 69/119 (57%), Gaps = 2/119 (1%)
Query: 2 DAQTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEID 61
+ + + ++ I+YP Y + ++ +GRR+S +A ENP I+D C+ L +P +E+D
Sbjct: 84 EEEKKQFDQFQIIYPCYFDINRSHKQGRRVSIDRAVENPLATTISDACRRLGLPVFLELD 143
Query: 62 KAYPRDFMQRGRVRVMLKR--EDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPAS 118
K +P+DF GRV+V+ K ++G +NP + +++ L +AE + HP + P S
Sbjct: 144 KTHPQDFGNPGRVKVLFKAVFDNGKLINPKLQTKRVLFNVIAEYLSEHPTTLESIGPKS 202
>sp|P41922|SEC65_YARLI Signal recognition particle SEC65 subunit OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=SEC65 PE=3 SV=1
Length = 310
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 4 QTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKA 63
Q + K W I+YPVY + KT+ EGRR+ A ENP IA+ C+ L +P E K
Sbjct: 114 QESDFKDWQIVYPVYFDKNKTVGEGRRVPLELAVENPLGQTIAEACKMLTLPSIYEAHKT 173
Query: 64 YPRDFMQRGRVRVMLKREDGTFVNP-AISSRKQLMLHVAELVPRHPNR 110
+P+D+ GRVRV LK + + P ++ +++ L +A+ + HP +
Sbjct: 174 HPKDWANPGRVRVQLKDDPALGLPPHSVKNKRHLFRLIAQYMKEHPTK 221
>sp|O61749|SRP19_CAEEL Probable signal recognition particle 19 kDa protein
OS=Caenorhabditis elegans GN=F37F2.2 PE=3 SV=3
Length = 160
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 5/106 (4%)
Query: 9 KKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRD- 67
K+W+++YP YI+ KKT +GR+IS A ENPT +EI D + +E K YPRD
Sbjct: 13 KRWIVIYPAYIDKKKTAKQGRKISQILAVENPTSVEIHDVLAAVGFNPLLERTKCYPRDG 72
Query: 68 ---FMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNR 110
F +GRVRV LK +DGT + +R ++ VAE++P+ R
Sbjct: 73 ERDFEVQGRVRVQLKNDDGTAKHEQ-KTRDEIFKMVAEMIPKLKTR 117
>sp|Q6BM93|SEC65_DEBHA Signal recognition particle SEC65 subunit OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=SEC65 PE=3 SV=1
Length = 269
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 75/126 (59%), Gaps = 12/126 (9%)
Query: 6 ARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP 65
A +KK+ I+YP Y + ++ +GRR+S SKA NP I+D C++ +P +E+DK +P
Sbjct: 82 AELKKFQIIYPCYFDKSRSHKDGRRVSESKAVSNPLAKTISDACRHYNLPVMLELDKTHP 141
Query: 66 RDFMQRGRVRVMLK--REDGTFVNPAISSRKQLMLHVAELVPRHPNRTKKQEPASTSSNA 123
+DF GRVRV++K ++G V+ +++ ++ +A+ + HP +T ++
Sbjct: 142 QDFGNPGRVRVLIKDNNKNGMPVDSRFKTKRAVLNIIADYLKTHP---------TTLASI 192
Query: 124 GPSKSG 129
GP KSG
Sbjct: 193 GP-KSG 197
>sp|P49963|SRP19_DROME Signal recognition particle 19 kDa protein OS=Drosophila
melanogaster GN=Srp19 PE=2 SV=2
Length = 160
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 8 IKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPR- 66
+++W+ +YP YIN KKT EGRR+ +NP+ IEI D + +E +K Y R
Sbjct: 20 MERWICIYPAYINRKKTRQEGRRLPKENCVDNPSYIEIRDVLSVSNLQFLME-NKKYCRE 78
Query: 67 ---DFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPNRTKK 113
+ RGRVRV L+ DGT N +R+ +MLH+A +P+ R K
Sbjct: 79 NSSEMEFRGRVRVQLRNVDGTLYNNDFPTRESIMLHIASKIPQLKTRQNK 128
>sp|Q554G7|SRP19_DICDI Signal recognition particle 19 kDa protein homolog OS=Dictyostelium
discoideum GN=srp19 PE=3 SV=1
Length = 178
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 4/114 (3%)
Query: 8 IKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRD 67
KKW I+YP +INS+ T +GR++S +NPT EIA+ L +P IE K YP++
Sbjct: 17 FKKWYIVYPNHINSELTKEKGRKVSKEHGVKNPTLPEIAEATAQLGLPCIIETSKGYPKE 76
Query: 68 FMQRGRVRVMLKREDGTFV--NPAISSRKQLMLHVAELVPR-HPNRTKKQEPAS 118
F RGR+R+ DGT + NP I ++ L++ +AE + +PNR + P S
Sbjct: 77 FFLRGRLRINF-FCDGTTMPRNPHIPNKTVLLVKIAERIKLINPNRPEPFNPIS 129
>sp|O13475|SEC65_KLULA Signal recognition particle SEC65 subunit OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=SEC65 PE=3 SV=2
Length = 270
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 8 IKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRD 67
IK++ +LYP Y ++++T A+GRR ENP IAD + L IP E K +P+D
Sbjct: 88 IKEFQMLYPCYFDTRRTHAQGRRAPKDLCVENPLAKTIADAARSLGIPSIFEGSKTHPQD 147
Query: 68 FMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHP 108
F GRVRV++K FV+ I +++ LM + E + HP
Sbjct: 148 FGNPGRVRVLIKENGKPFVS-GIDNKRVLMKRIGEYLKSHP 187
>sp|Q6FP52|SEC65_CANGA Signal recognition particle SEC65 subunit OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SEC65 PE=3 SV=1
Length = 264
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 62/109 (56%), Gaps = 6/109 (5%)
Query: 4 QTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKA 63
+ +KK+ +LYP Y + ++ EGRR+ A ENP I+D + + E DK
Sbjct: 82 ELDEVKKFQVLYPCYFDKNRSHKEGRRVPIEMAVENPLAKTISDAVREYGLLSIFEGDKC 141
Query: 64 YPRDFMQRGRVRVMLKREDGTFVNPAIS----SRKQLMLHVAELVPRHP 108
+P+DF GR+RV+LK E+G V P+ S ++QLM VAE + +HP
Sbjct: 142 HPQDFGNPGRIRVLLK-EEGKLV-PSASKFSGGKRQLMKLVAEYLQKHP 188
>sp|P29478|SEC65_YEAST Signal recognition particle subunit SEC65 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SEC65 PE=1
SV=1
Length = 273
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 4/105 (3%)
Query: 8 IKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRD 67
+K++ +LYP Y + ++ EGRR+ A ENP +AD + L I E +K +P+D
Sbjct: 95 VKRFQVLYPCYFDINRSHKEGRRVPKELAVENPLAKTMADAVRELGILCIFEGEKCHPQD 154
Query: 68 FMQRGRVRVMLKREDGTFVNPAI---SSRKQLMLHVAELVPRHPN 109
F GR+RV+ K E+G + A ++QLM V E + RHP
Sbjct: 155 FGNPGRIRVLFK-ENGQLIGAATKFKGGKRQLMKAVGEYMKRHPT 198
>sp|Q756H7|SEC65_ASHGO Signal recognition particle SEC65 subunit OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SEC65 PE=3 SV=1
Length = 261
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Query: 6 ARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP 65
A +K++ ILYP Y + +T A+GR++ A NP IAD C+ L++ E +K +P
Sbjct: 85 ADLKRFQILYPCYFDKNRTHAQGRQVPLELAVANPLAKTIADACRELEVLCVFEGEKTHP 144
Query: 66 RDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPN 109
+DF GRVRV+LK E+G ++++ LM +VA+ + HP
Sbjct: 145 QDFGNPGRVRVLLK-ENGKAAG-KYANKRWLMKNVAKYLQEHPT 186
>sp|Q5V5S9|SRP19_HALMA Signal recognition particle 19 kDa protein OS=Haloarcula
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 /
VKM B-1809) GN=srp19 PE=3 SV=2
Length = 92
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 13 ILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRG 72
+++P +++ ++ ++GRR+S A ENPT EIA Q + IE DK YPR++ RG
Sbjct: 5 VIWPAALDANRSRSDGRRVSLDLAVENPTVDEIAKAVQQVGYDAVIERDKTYPREYEGRG 64
Query: 73 RVRV 76
RV V
Sbjct: 65 RVVV 68
>sp|Q2NF32|SRP19_METST Signal recognition particle 19 kDa protein OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=srp19 PE=3 SV=1
Length = 92
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 13 ILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRG 72
I++P YINS+ + EGR++S ++ E P EI+ + LKI + +E +K+YP + ++
Sbjct: 4 IIWPTYINSEHSRGEGRKLSLEESVEEPKIREISQSLKKLKIQYVVEHNKSYPGSWWEKS 63
Query: 73 RVRVMLKREDGT 84
RV++++ED T
Sbjct: 64 G-RVVVEQEDMT 74
>sp|B8D570|SRP19_DESK1 Signal recognition particle 19 kDa protein OS=Desulfurococcus
kamchatkensis (strain 1221n / DSM 18924) GN=srp19 PE=3
SV=1
Length = 95
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQR 71
+++YP YI+SKK+ +EGR+IS KA NP+ EI + + L + E +K YPR ++
Sbjct: 10 IVVYPAYIDSKKSRSEGRKISLGKAVPNPSIKEIIEASERLGLNPLYE-EKHYPR--LKE 66
Query: 72 GRVRVMLKREDGTF 85
G+ RV++ ++ G
Sbjct: 67 GKGRVLVDKKSGKL 80
>sp|Q8SRC3|SEC65_ENCCU Signal recognition particle SEC65 subunit OS=Encephalitozoon
cuniculi (strain GB-M1) GN=SEC65 PE=3 SV=1
Length = 137
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFM 69
K LYP+Y++S ++++EGR+ + P EI + + L+I + E K +PRDF
Sbjct: 4 KHFCLYPIYMDSARSLSEGRKYRKEICVQRPRYHEIKNALEKLEIEYTDEPSKKHPRDFF 63
Query: 70 QRGRVRVMLKREDG-TFVNPAIS 91
GR R+ K+E G FV IS
Sbjct: 64 NSGRFRI--KKEYGRLFVIEGIS 84
>sp|O26267|SRP19_METTH Signal recognition particle 19 kDa protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=srp19 PE=3 SV=1
Length = 91
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQ- 70
+I++P Y++S+K+ +EGRR+ A E+PT EI + L++ ++E D+AYP + +
Sbjct: 3 LIIWPTYLDSRKSRSEGRRVPLEYAVESPTASEILRAARKLQLEASMESDRAYPPSWWES 62
Query: 71 RGRVRV 76
GRV V
Sbjct: 63 SGRVVV 68
>sp|Q3IPF4|SRP19_NATPD Signal recognition particle 19 kDa protein OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=srp19 PE=3
SV=1
Length = 92
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 37/64 (57%)
Query: 13 ILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRG 72
+++P Y+++ T EGRR++ A E PT EIA Q + IE K YPR++ RG
Sbjct: 5 VIWPAYLDANCTRNEGRRVAEDLAVEEPTVDEIASAVQQVGYDAVIERSKTYPREYEPRG 64
Query: 73 RVRV 76
RV V
Sbjct: 65 RVVV 68
>sp|Q18K21|SRP19_HALWD Signal recognition particle 19 kDa protein OS=Haloquadratum
walsbyi (strain DSM 16790) GN=srp19 PE=3 SV=1
Length = 93
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 13 ILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRG 72
I++P Y+++ T ++GRR+S A E+P EIA+ Q + IE D A+PR++ G
Sbjct: 6 IVWPRYLDASITRSDGRRVSLQDAIEDPEVDEIAEAVQQIGYDAVIEHDVAHPREWGTSG 65
Query: 73 RVRV 76
RV V
Sbjct: 66 RVIV 69
>sp|B9LUG2|SRP19_HALLT Signal recognition particle 19 kDa protein OS=Halorubrum
lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891
/ ACAM 34) GN=srp19 PE=3 SV=1
Length = 92
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 13 ILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRG 72
++YP Y ++ ++ +EGRR+ A E PT EIA Q + IE +K Y R+F RG
Sbjct: 5 VVYPAYFDADRSRSEGRRVPMDLAIEEPTVDEIAKAVQQVGYDAVIEREKTYSREFKPRG 64
Query: 73 RVRV 76
V V
Sbjct: 65 AVVV 68
>sp|A9AAJ9|SRP19_METM6 Signal recognition particle 19 kDa protein OS=Methanococcus
maripaludis (strain C6 / ATCC BAA-1332) GN=srp19 PE=3
SV=1
Length = 89
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 38/56 (67%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRD 67
+I++P YI+SK+T EGR++S A ++P +IAD + + ++IE K+YPR+
Sbjct: 4 MIIWPTYIDSKRTKNEGRKVSKEFAVQSPKLKDIADKINKMGLEYSIENKKSYPRE 59
>sp|A6VG52|SRP19_METM7 Signal recognition particle 19 kDa protein OS=Methanococcus
maripaludis (strain C7 / ATCC BAA-1331) GN=srp19 PE=3
SV=1
Length = 89
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRD 67
+I++P YI+ K+T EGR++ A NP +IAD + + + H+IEI K+YP +
Sbjct: 4 MIIWPAYIDIKRTKNEGRKVPKEFAVANPKLKDIADKIKKMGLEHSIEIKKSYPME 59
>sp|A0B5U7|SRP19_METTP Signal recognition particle 19 kDa protein OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=srp19 PE=3 SV=2
Length = 93
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQR 71
++++P Y + +++ +GRR++ + A NP +I + L + +E +K YP+++ ++
Sbjct: 6 LVIWPAYFDLERSRGQGRRVATANAVRNPKLEDIIRASKDLGLDPVVETEKCYPKNWYEQ 65
Query: 72 -GRVRVMLK 79
GRV V+ K
Sbjct: 66 PGRVLVLKK 74
>sp|Q8TTY3|SRP19_METAC Signal recognition particle 19 kDa protein OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=srp19 PE=3 SV=2
Length = 101
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQ- 70
++++P YI+ ++ + GR IS A + P EI D + L + +E +KAYP+ + +
Sbjct: 7 LVIWPAYIDQTRSRSNGRIISRKNAVKEPHLNEIKDAAKNLGLNPEVEPEKAYPKSWWEV 66
Query: 71 RGRVRV 76
GRV V
Sbjct: 67 SGRVLV 72
>sp|A4FX62|SRP19_METM5 Signal recognition particle 19 kDa protein OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=srp19 PE=3
SV=1
Length = 89
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRD 67
+I++P YI+ K+T EGR++ A +NP +IA + + + ++IE K+YP+D
Sbjct: 4 MIIWPAYIDLKRTKNEGRKVPKEFAVQNPKLKDIAGKLKKMGLEYSIEHKKSYPKD 59
>sp|Q6LY84|SRP19_METMP Signal recognition particle 19 kDa protein OS=Methanococcus
maripaludis (strain S2 / LL) GN=srp19 PE=3 SV=1
Length = 89
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRD 67
+IL+P YI+ K+T EGR++ A +NP EIA + + + +++E K+YP++
Sbjct: 4 IILWPAYIDLKRTKNEGRKVPKEIAIQNPKLKEIASKIKKMGLEYSVENKKSYPKE 59
>sp|Q8TV49|SRP19_METKA Signal recognition particle 19 kDa protein OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=srp19 PE=3 SV=1
Length = 103
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQR 71
++++P Y ++ ++ +EGR++ A NP E+ + L + ++ DK YP+ +
Sbjct: 15 IVVWPAYFDADRSRSEGRKVPKRLAVRNPRLTELRHIAEKLGLNPKVQRDKRYPKRWWD- 73
Query: 72 GRVRVMLKREDGTFVNPAISSRKQLMLHVAE 102
+ G + + S+++ +L +AE
Sbjct: 74 ---------DKGRLIVDKVESKRKTLLMIAE 95
>sp|Q46D06|SRP19_METBF Signal recognition particle 19 kDa protein OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=srp19 PE=3 SV=2
Length = 101
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQ- 70
++++PVY++ K+ + GR IS A + P EI + + L + +E KAYP+ + +
Sbjct: 7 LVIWPVYLDQTKSRSSGRIISRKNAIKEPQLNEIKEAARQLGLNPEVEPHKAYPKSWWEV 66
Query: 71 RGRVRV 76
GRV V
Sbjct: 67 SGRVLV 72
>sp|A5UNC8|SRP19_METS3 Signal recognition particle 19 kDa protein OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=srp19
PE=3 SV=1
Length = 89
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQR 71
+ ++P Y++ ++ EGR++S A E P +I + L +P++ + +++YP + ++
Sbjct: 2 ITVWPQYLDKNLSLNEGRKVSKEIAVEEPKLQDIEKALKRLNLPYSTQKERSYPGKWYEK 61
Query: 72 -GRVRV 76
GR+ V
Sbjct: 62 SGRILV 67
>sp|Q8PWM7|SRP19_METMA Signal recognition particle 19 kDa protein OS=Methanosarcina
mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 /
JCM 11833 / OCM 88) GN=srp19 PE=3 SV=1
Length = 101
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQ- 70
++++P YI+ K+ + GR IS + + P EI + + L + +E +KAYP+ + +
Sbjct: 7 LVIWPAYIDQTKSRSSGRIISRKNSIKEPHLNEIKEAARQLGLNPEVEPEKAYPKSWWEV 66
Query: 71 RGRVRV 76
GRV V
Sbjct: 67 SGRVLV 72
>sp|Q9HQ21|SRP19_HALSA Signal recognition particle 19 kDa protein OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=srp19 PE=3 SV=1
Length = 92
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 13 ILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP-RDFMQR 71
+++P Y ++ + +GRR+ A E P+ EIA Q + +E D AYP R +
Sbjct: 5 VIWPAYFDAALSRRDGRRVPMELAVEEPSIDEIATAVQQVGYDAVVERDVAYPRRHWDAA 64
Query: 72 GRVRV 76
GRV V
Sbjct: 65 GRVLV 69
>sp|B0R5G1|SRP19_HALS3 Signal recognition particle 19 kDa protein OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=srp19
PE=3 SV=1
Length = 92
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 13 ILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP-RDFMQR 71
+++P Y ++ + +GRR+ A E P+ EIA Q + +E D AYP R +
Sbjct: 5 VIWPAYFDAALSRRDGRRVPMELAVEEPSIDEIATAVQQVGYDAVVERDVAYPRRHWDAA 64
Query: 72 GRVRV 76
GRV V
Sbjct: 65 GRVLV 69
>sp|O29010|SRP19_ARCFU Signal recognition particle 19 kDa protein OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=srp19 PE=1 SV=1
Length = 104
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 13 ILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRG 72
+++ V ++SKK+ AEGRRI A N E+ + C+ L + E +K YP+ + + G
Sbjct: 5 VVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEACKELGLKFRAE-EKKYPKSWWEEG 63
Query: 73 RVRVMLKREDGTFVNPAISSRKQLMLHVA 101
G V ++ +LM+ +A
Sbjct: 64 ----------GRVVVEKRGTKTKLMIELA 82
>sp|A2BJ20|SRP19_HYPBU Signal recognition particle 19 kDa protein OS=Hyperthermus
butylicus (strain DSM 5456 / JCM 9403) GN=srp19 PE=3
SV=1
Length = 103
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFM-Q 70
++L+P I+S + +EGR+I A P EI + L + +E + AYPR + Q
Sbjct: 10 IVLWPANIDSTLSRSEGRKIPLRDAVRKPRVEEIVEAANRLGLNPTVE-EAAYPRSWWEQ 68
Query: 71 RGRVRV 76
R RV V
Sbjct: 69 RKRVVV 74
>sp|Q58440|SRP19_METJA Signal recognition particle 19 kDa protein OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=srp19 PE=1 SV=1
Length = 87
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQ 70
+I++P YI+ KK+ EGR++ A E P+ +I + L + I DK YPR +
Sbjct: 1 MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWE 59
>sp|Q12U87|SRP19_METBU Signal recognition particle 19 kDa protein OS=Methanococcoides
burtonii (strain DSM 6242) GN=srp19 PE=3 SV=3
Length = 95
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQ- 70
++++P ++ ++ GR IS + E P E+ + L + +E DK YPR + +
Sbjct: 7 LVIWPANLDKSRSRKGGRIISRKSSLEAPLLRELTAAAEKLNLNPEVEADKKYPRTWWES 66
Query: 71 RGRVRV 76
GR+ V
Sbjct: 67 SGRILV 72
>sp|A8AAJ8|SRP19_IGNH4 Signal recognition particle 19 kDa protein OS=Ignicoccus
hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)
GN=srp19 PE=3 SV=1
Length = 99
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFM 69
K+VIL+P Y +S + EGRR+ A P+ E+ + L + A ++ YPR++
Sbjct: 9 KYVILWPQYFDSSLSRKEGRRVPRELAVARPSQKELLEVAAALGL-EAKPLEGKYPREWW 67
Query: 70 QR 71
+
Sbjct: 68 NK 69
>sp|O94407|SEC65_SCHPO Signal recognition particle sec65 subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=sec65 PE=3 SV=2
Length = 213
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQR 71
+ILYP+Y + + R + KA NP IAD + L +E K +P D++
Sbjct: 18 IILYPIYFDKSRP-RRFRCVPKDKAILNPLAKNIADVVRDLGYKCKLEPLKTHPADWVNP 76
Query: 72 GRVRVML 78
GRV ++L
Sbjct: 77 GRVEMVL 83
>sp|A6UPB8|SRP19_METVS Signal recognition particle 19 kDa protein OS=Methanococcus
vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp19
PE=3 SV=1
Length = 89
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 32/56 (57%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRD 67
++++P Y + K+T EGR++ S NP +I + + ++I+ K+YP++
Sbjct: 4 IVIWPAYFDLKRTKNEGRKVPKSFGVLNPKLKDIVSIIEKMGHEYSIDNKKSYPKE 59
>sp|A1RS22|SRP19_PYRIL Signal recognition particle 19 kDa protein OS=Pyrobaculum
islandicum (strain DSM 4184 / JCM 9189) GN=srp19 PE=3
SV=1
Length = 95
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 13 ILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP 65
IL+ VY++S + GR + SKA PT E+ + L + + DK YP
Sbjct: 8 ILWLVYLDSSVPRSRGRILPRSKAVSKPTLQEVIQALERLGYRYQVYQDKKYP 60
>sp|Q9Z823|LPXK_CHLPN Tetraacyldisaccharide 4'-kinase OS=Chlamydia pneumoniae GN=lpxK
PE=3 SV=1
Length = 365
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 29 RRISASKACENPTCIEIADCCQYLKIPHAIEI------DKAYPRDFMQRGRVR---VMLK 79
RRISA++A E + + D QY K+ +EI D R F +GR+R + LK
Sbjct: 144 RRISAARAAEKFGILLLDDGLQYRKLHKDVEIAVVNGQDPLGGRAFFPKGRLRDFPLRLK 203
Query: 80 REDGTFVN 87
D VN
Sbjct: 204 TVDAIIVN 211
>sp|P0ADT5|YGIC_ECOLI Uncharacterized protein YgiC OS=Escherichia coli (strain K12)
GN=ygiC PE=4 SV=1
Length = 386
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 62 KAYPRDFMQRGRVRVMLKREDGTFVNPA---ISSRKQLMLHVAELVPRHPN 109
K YP +FM R L+ ++ PA I S K L+ + E+ P HPN
Sbjct: 232 KLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEMFPNHPN 282
>sp|P0ADT6|YGIC_ECOL6 Uncharacterized protein YgiC OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=ygiC PE=4 SV=1
Length = 386
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 62 KAYPRDFMQRGRVRVMLKREDGTFVNPA---ISSRKQLMLHVAELVPRHPN 109
K YP +FM R L+ ++ PA I S K L+ + E+ P HPN
Sbjct: 232 KLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEMFPNHPN 282
>sp|P0ADT7|YGIC_ECO57 Uncharacterized protein YgiC OS=Escherichia coli O157:H7 GN=ygiC
PE=4 SV=1
Length = 386
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 62 KAYPRDFMQRGRVRVMLKREDGTFVNPA---ISSRKQLMLHVAELVPRHPN 109
K YP +FM R L+ ++ PA I S K L+ + E+ P HPN
Sbjct: 232 KLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEMFPNHPN 282
>sp|Q9YDZ7|SRP19_AERPE Signal recognition particle 19 kDa protein OS=Aeropyrum pernix
(strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC
100138 / K1) GN=srp19 PE=3 SV=1
Length = 112
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQR 71
+IL+P Y +S GRR+ +P ++A+ + +E + +YPR + +
Sbjct: 18 IILWPAYFDSTLPRRLGRRVPRDMGVPSPKPEDVAEAARRAGFEAVVE-ESSYPRLWWRV 76
Query: 72 GRVRVMLKRED 82
R V+L ED
Sbjct: 77 RRRIVVLAPED 87
>sp|Q8ZTB7|SRP19_PYRAE Signal recognition particle 19 kDa protein OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=srp19 PE=3 SV=1
Length = 95
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 13 ILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYP 65
IL+ VYI++ + GR + A E P+ E+ + L + DK YP
Sbjct: 8 ILWLVYIDASVPRSRGRVLPRGLAVEKPSLKEVVQALEELGYKFQVFPDKKYP 60
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,636,549
Number of Sequences: 539616
Number of extensions: 1701850
Number of successful extensions: 4672
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 4602
Number of HSP's gapped (non-prelim): 79
length of query: 136
length of database: 191,569,459
effective HSP length: 101
effective length of query: 35
effective length of database: 137,068,243
effective search space: 4797388505
effective search space used: 4797388505
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)