Query 032659
Match_columns 136
No_of_seqs 113 out of 350
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 06:25:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jid_A Signal recognition part 100.0 4E-46 1.4E-50 277.9 11.9 110 4-113 8-121 (128)
2 1kvn_A SRP19; RNA binding prot 100.0 9.7E-42 3.3E-46 246.4 4.6 91 10-112 2-93 (104)
3 1lng_A SRP19, signal recogniti 100.0 7.8E-39 2.7E-43 224.7 8.4 85 12-107 1-86 (87)
4 3dlu_A SRP19, signal recogniti 100.0 2.7E-38 9.2E-43 229.1 6.1 94 10-114 2-102 (106)
5 3ktw_A SRP19, signal recogniti 100.0 2.9E-37 1E-41 224.5 10.1 93 6-112 13-105 (109)
6 3l4r_A Allergen DOG 2, minor a 59.7 9.7 0.00033 27.4 3.9 53 5-57 94-146 (170)
7 1xki_A VON ebner'S gland prote 53.9 19 0.00064 25.2 4.5 53 5-57 86-138 (162)
8 2da7_A Zinc finger homeobox pr 49.6 11 0.00039 24.8 2.5 23 37-59 27-49 (71)
9 3kff_A MUP 4, major urinary pr 44.3 11 0.00037 26.6 2.0 53 5-57 94-146 (162)
10 3rri_A Glyoxalase/bleomycin re 43.0 27 0.00092 22.7 3.7 49 35-86 73-123 (135)
11 3e5d_A Putative glyoxalase I; 42.4 33 0.0011 21.6 4.0 50 31-86 73-123 (127)
12 1epa_A Epididymal retinoic aci 41.0 13 0.00045 25.8 1.9 51 6-56 92-142 (164)
13 3bx8_A Engineered human lipoca 40.1 16 0.00055 25.9 2.3 52 5-56 112-163 (178)
14 2hzq_A Apolipoprotein D, APO-D 38.5 16 0.00055 26.0 2.1 52 5-56 100-152 (174)
15 3qkg_A Protein AMBP; beta barr 37.6 20 0.0007 26.2 2.6 52 5-56 105-157 (193)
16 3o22_A Prostaglandin-H2 D-isom 37.3 17 0.00059 25.4 2.1 52 5-56 94-146 (162)
17 3cbc_A Neutrophil gelatinase-a 37.3 16 0.00055 26.4 2.0 53 5-57 132-184 (198)
18 3s26_A Neutrophil gelatinase-a 37.2 16 0.00055 26.6 2.0 52 5-56 114-165 (190)
19 3sao_A Extracellular fatty aci 36.7 15 0.0005 25.9 1.6 53 5-57 88-140 (160)
20 1ew3_A Allergen EQU C 1; lipoc 35.6 24 0.00082 24.3 2.6 52 5-56 91-142 (159)
21 1gka_B Crustacyanin A2 subunit 35.4 24 0.00082 24.8 2.6 52 5-56 107-158 (174)
22 3i4a_A N(G),N(G)-dimethylargin 34.6 12 0.00041 30.1 1.0 52 23-76 53-113 (308)
23 2l5p_A Lipocalin 12; beta barr 34.5 20 0.00067 25.8 2.1 53 5-57 107-159 (184)
24 2k9k_A TONB2; metal transport; 33.3 14 0.00048 24.5 1.0 37 54-90 19-59 (106)
25 1beb_A Beta-lactoglobulin; lip 32.8 19 0.00063 25.1 1.6 53 5-57 96-148 (162)
26 2a2u_A Protein (alpha-2U-globu 31.5 20 0.00068 25.2 1.6 52 5-56 113-164 (181)
27 2ra6_A Trichosurin; lipocalin, 31.3 20 0.00069 25.0 1.6 52 5-56 103-154 (166)
28 3ey7_A Biphenyl-2,3-DIOL 1,2-d 31.2 45 0.0016 21.1 3.3 48 35-86 78-125 (133)
29 3qvq_A Phosphodiesterase OLEI0 30.6 1.6E+02 0.0053 22.2 6.7 57 38-108 96-167 (252)
30 1i4u_A Crustacyanin; lipocalin 30.2 26 0.00088 25.2 2.1 52 5-56 109-161 (181)
31 2o38_A Hypothetical protein; a 30.0 55 0.0019 22.3 3.7 38 39-78 80-117 (120)
32 1u07_A TONB protein; beta-hair 30.0 37 0.0013 21.8 2.6 34 57-90 7-44 (90)
33 2nwr_A 2-dehydro-3-deoxyphosph 28.9 48 0.0016 26.4 3.6 46 10-60 35-82 (267)
34 3bbo_I Ribosomal protein L6; l 28.9 68 0.0023 25.1 4.4 44 63-109 153-196 (223)
35 3fkf_A Thiol-disulfide oxidore 28.8 1.1E+02 0.0036 19.7 4.9 65 40-105 77-146 (148)
36 2nly_A BH1492 protein, diverge 28.4 48 0.0016 26.0 3.5 58 38-109 37-98 (245)
37 3g12_A Putative lactoylglutath 28.4 70 0.0024 20.9 4.0 48 31-87 68-116 (128)
38 3kol_A Oxidoreductase, glyoxal 27.7 86 0.003 20.3 4.3 46 34-86 101-146 (156)
39 3rhe_A NAD-dependent benzaldeh 27.0 1.1E+02 0.0039 20.5 5.0 51 29-86 67-118 (148)
40 2xst_A Lipocalin 15; transport 26.2 22 0.00074 24.3 1.0 52 5-56 97-148 (161)
41 2i7r_A Conserved domain protei 26.0 81 0.0028 19.7 3.8 46 35-86 67-112 (118)
42 2qv5_A AGR_C_5032P, uncharacte 25.9 1E+02 0.0035 24.4 5.0 60 37-109 63-125 (261)
43 3bt3_A Glyoxalase-related enzy 23.6 97 0.0033 20.5 4.0 43 38-86 97-139 (148)
44 1q8l_A Copper-transporting ATP 23.3 71 0.0024 19.1 3.0 21 41-61 59-79 (84)
45 2yib_D RNA-directed RNA polyme 23.1 38 0.0013 31.1 2.2 27 34-60 493-519 (770)
46 3p96_A Phosphoserine phosphata 22.9 77 0.0026 25.4 3.9 40 44-89 161-200 (415)
47 3fw2_A Thiol-disulfide oxidore 22.8 1.5E+02 0.0053 19.4 4.9 66 40-106 79-149 (150)
48 2rnn_A E3 SUMO-protein ligase 22.6 48 0.0016 23.6 2.2 20 37-56 37-56 (114)
49 1kxo_A DIGA16; lipocalin, anti 22.5 22 0.00075 25.7 0.4 52 5-56 103-157 (184)
50 3gr5_A ESCC; secretin, type II 22.4 53 0.0018 23.8 2.5 59 28-105 91-150 (156)
51 1exs_A Beta-lactoglobulin; lip 22.4 21 0.00073 24.7 0.4 53 5-57 96-148 (160)
52 2wvv_A Alpha-L-fucosidase; alp 22.4 50 0.0017 27.9 2.7 28 41-71 126-153 (450)
53 2qkf_A 3-deoxy-D-manno-octulos 22.2 92 0.0032 24.7 4.1 45 11-60 47-93 (280)
54 2ewt_A BLDD, putative DNA-bind 22.2 65 0.0022 18.7 2.6 21 36-56 46-66 (71)
55 4a29_A Engineered retro-aldol 22.1 32 0.0011 27.6 1.4 23 38-60 138-160 (258)
56 3b7h_A Prophage LP1 protein 11 22.1 57 0.0019 19.3 2.3 19 39-57 47-65 (78)
57 2pus_A IBDV VP1 RNA-dependant 22.0 41 0.0014 31.2 2.2 27 34-60 513-539 (852)
58 1ig7_A Homeotic protein MSX-1; 21.5 78 0.0027 18.4 2.8 21 37-57 22-42 (58)
59 4a4j_A Pacszia, cation-transpo 21.4 64 0.0022 18.4 2.4 20 39-58 49-68 (69)
60 3huh_A Virulence protein STM31 21.3 91 0.0031 20.5 3.5 43 41-86 96-138 (152)
61 1e5p_A Aphrodisin; lipocalin, 21.3 40 0.0014 23.0 1.6 52 5-57 86-138 (151)
62 1z24_A Insecticyanin A form; b 21.2 56 0.0019 23.4 2.5 52 5-56 107-162 (189)
63 2al3_A TUG long isoform; TUG U 21.2 46 0.0016 22.7 1.8 28 28-56 19-47 (90)
64 3omt_A Uncharacterized protein 21.0 76 0.0026 18.7 2.7 20 37-56 45-64 (73)
65 1gm6_A SAL, salivary lipocalin 20.9 39 0.0013 24.0 1.5 52 5-56 97-148 (175)
66 1k61_A Mating-type protein alp 20.9 72 0.0025 18.8 2.6 20 37-56 23-42 (60)
67 4g6x_A Glyoxalase/bleomycin re 20.8 1.8E+02 0.0063 19.3 5.0 44 34-86 103-146 (155)
68 4b4k_A N5-carboxyaminoimidazol 20.6 40 0.0014 25.8 1.6 23 37-59 33-55 (181)
69 2p25_A Glyoxalase family prote 20.5 1.5E+02 0.0051 18.2 4.2 46 35-86 77-122 (126)
70 1akh_A Protein (mating-type pr 20.2 72 0.0025 18.8 2.5 21 37-57 27-47 (61)
71 1osd_A MERP, hypothetical prot 20.1 91 0.0031 17.3 2.9 18 41-58 53-70 (72)
No 1
>1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B
Probab=100.00 E-value=4e-46 Score=277.89 Aligned_cols=110 Identities=46% Similarity=0.745 Sum_probs=104.0
Q ss_pred ccccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcC----CCceEEEEee
Q 032659 4 QTARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFM----QRGRVRVMLK 79 (136)
Q Consensus 4 ~~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~----~~GRVrV~l~ 79 (136)
..+|.++|+||||+|||+++|++||||||+++||+||+++||++||+.|||++++|++|.|||+|+ ++|||+|+|+
T Consensus 8 ~~~d~~r~~vIyP~Y~Ds~~tr~eGRRV~k~~aVenPt~~EI~~a~~~Lgl~~~vE~~K~yPr~w~~~~~~~GRVrV~lk 87 (128)
T 1jid_A 8 SPADQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLK 87 (128)
T ss_dssp STTSGGGSEEECGGGGBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCEEEETTCCCTTCCCCCGGGCCEEEECCB
T ss_pred CCcCccceEEECcccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEEecCCCCCccchhhcCCCCEEEEEEe
Confidence 368899999999999999999999999999999999999999999999999999999999999996 4899999999
Q ss_pred cCCCCccCCCCCCHHHHHHHHHHHhhcCCCccCC
Q 032659 80 REDGTFVNPAISSRKQLMLHVAELVPRHPNRTKK 113 (136)
Q Consensus 80 ~~dg~~~~~~~~~K~~Ll~~Ia~~I~~~~~r~~~ 113 (136)
++||+|+||+|++|.+||.+||++|+++++|+.+
T Consensus 88 ~~dG~~~n~~~~sK~~Ll~~IA~~I~~lr~r~~~ 121 (128)
T 1jid_A 88 QEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQL 121 (128)
T ss_dssp CTTSCBSCTTCSSHHHHHHHHHHHGGGCTTC---
T ss_pred CCCCCccCCcCCCHHHHHHHHHHHHHHhhccCCc
Confidence 9999999999999999999999999999999865
No 2
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A
Probab=100.00 E-value=9.7e-42 Score=246.37 Aligned_cols=91 Identities=29% Similarity=0.471 Sum_probs=86.8
Q ss_pred CeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcC-CCceEEEEeecCCCCccCC
Q 032659 10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFM-QRGRVRVMLKREDGTFVNP 88 (136)
Q Consensus 10 ~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~-~~GRVrV~l~~~dg~~~~~ 88 (136)
+|+||||+|||+++|++||||||+++||+||+++||++||+.|||++++| +|.|||||| ++|||+|++.
T Consensus 2 ~~~vIyP~Y~Ds~~tr~eGRRv~k~~aV~nP~~~EI~~a~~~Lgl~~~vE-~K~yPr~w~~~~GRVrV~~~--------- 71 (104)
T 1kvn_A 2 KESVVWTVNLDSKKSRAEGRRIPRRFAVPNVKLHELVEASKELGLKFRAE-EKKYPKSWWEEGGRVVVEKR--------- 71 (104)
T ss_dssp CCEEEETTTTCSSSCTTTTCCSCGGGCCSSCCHHHHHHHHHHHTSSEEEC-CCTTTCSSCSSCCEEEESCC---------
T ss_pred CeEEEeeccccCCCChhhCCccCHHHhccCCCHHHHHHHHHHcCCCeEEe-cCCCCchhhcCCCEEEEEeC---------
Confidence 69999999999999999999999999999999999999999999999999 999999999 6899999962
Q ss_pred CCCCHHHHHHHHHHHhhcCCCccC
Q 032659 89 AISSRKQLMLHVAELVPRHPNRTK 112 (136)
Q Consensus 89 ~~~~K~~Ll~~Ia~~I~~~~~r~~ 112 (136)
.+|.+||++||++|+++++|+.
T Consensus 72 --~~K~~ll~~Ia~~I~~~r~r~~ 93 (104)
T 1kvn_A 72 --GTKTKLMIELARKIAEIREQKR 93 (104)
T ss_dssp --SCSHHHHHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHhhcccc
Confidence 4799999999999999999884
No 3
>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*
Probab=100.00 E-value=7.8e-39 Score=224.72 Aligned_cols=85 Identities=31% Similarity=0.522 Sum_probs=80.7
Q ss_pred EEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcCCC-ceEEEEeecCCCCccCCCC
Q 032659 12 VILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQR-GRVRVMLKREDGTFVNPAI 90 (136)
Q Consensus 12 ~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~-GRVrV~l~~~dg~~~~~~~ 90 (136)
+||||+|||+++|++||||||+++||+||+++||++||++|||++++|++|+||||||+. |||+|++++
T Consensus 1 ivIyP~Y~ds~~tr~eGRrv~k~~aV~~P~~~EI~~a~~~lgl~~~~E~~K~yPr~w~~~~GRVrV~~~~---------- 70 (87)
T 1lng_A 1 MIIWPSYIDKKKSRREGRKVPEELAIEKPSLKDIEKALKKLGLEPKIYRDKRYPRQHWEICGCVEVDYKG---------- 70 (87)
T ss_dssp CEECGGGTBTTSCTTTTCCSCTTTCBSSCCHHHHHHHHHHTTCCCEEETTCCCGGGTTSCCCEEECCCCS----------
T ss_pred CEEecccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCeEEccCCCCCcccccCCceEEEEeCC----------
Confidence 589999999999999999999999999999999999999999999999999999999986 999999743
Q ss_pred CCHHHHHHHHHHHhhcC
Q 032659 91 SSRKQLMLHVAELVPRH 107 (136)
Q Consensus 91 ~~K~~Ll~~Ia~~I~~~ 107 (136)
+|.+||++||+.|+++
T Consensus 71 -~K~~ll~~Ia~~i~~~ 86 (87)
T 1lng_A 71 -NKLQLLKEICKIIKGK 86 (87)
T ss_dssp -CHHHHHHHHHHHHTTC
T ss_pred -CHHHHHHHHHHHHHhc
Confidence 5999999999999875
No 4
>3dlu_A SRP19, signal recognition particle 19 kDa protein; protein-RNA, cytoplasm, ribonucleoprotein, RNA-binding, RNA binding protein; 1.80A {Pyrococcus furiosus} PDB: 3dlv_B
Probab=100.00 E-value=2.7e-38 Score=229.09 Aligned_cols=94 Identities=21% Similarity=0.276 Sum_probs=86.5
Q ss_pred CeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe-eEeccccCCcC-----cC-CCceEEEEeecCC
Q 032659 10 KWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH-AIEIDKAYPRD-----FM-QRGRVRVMLKRED 82 (136)
Q Consensus 10 ~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~-~vE~~K~yPrd-----w~-~~GRVrV~l~~~d 82 (136)
..+||||+|||+++|++||||||+++||+||+++||++||++|||++ ++|++|.|||| || ++|||+|++ +
T Consensus 2 ~~ivIyP~Y~Ds~~sr~eGRRV~k~~aV~nPt~~EI~~a~~~lgl~~~~vE~~K~yPr~~~~~~~~~~~GRVrV~~-~-- 78 (106)
T 3dlu_A 2 GRFVVWPSELDSRLSRKYGRIVPRSIAVESPRVEEIVRAAEELKFKVIRVEEDKLNPRLSGIDEELRTFGMIVLES-P-- 78 (106)
T ss_dssp CEEEECGGGGBTTSCGGGTCCSCTTTSBSSCCHHHHHHHHHHTTCEEEEEEEEEECC-------CCEEEEEEEEEC-S--
T ss_pred CcEEEeeccccCCCChhhcCccCHHHhccCCCHHHHHHHHHHcCCCceEecCCCCCCCcccccccccCCcEEEEec-C--
Confidence 47899999999999999999999999999999999999999999999 99999999999 98 699999995 2
Q ss_pred CCccCCCCCCHHHHHHHHHHHhhcCCCccCCC
Q 032659 83 GTFVNPAISSRKQLMLHVAELVPRHPNRTKKQ 114 (136)
Q Consensus 83 g~~~~~~~~~K~~Ll~~Ia~~I~~~~~r~~~~ 114 (136)
.+|.+||++||++|+++++|+.++
T Consensus 79 --------~~K~~ll~~Ia~~I~~lr~r~~~~ 102 (106)
T 3dlu_A 79 --------YGKSKSLKLIAQKIREFRRRSAGT 102 (106)
T ss_dssp --------SCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred --------CCHHHHHHHHHHHHHHHhCCCCCC
Confidence 589999999999999999988654
No 5
>3ktw_A SRP19, signal recognition particle 19 kDa protein; ribonucleoprotein complex, RNA-RNA tertiary interactions, AS loop, 7S RNA; 3.20A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.9e-37 Score=224.55 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=83.4
Q ss_pred ccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcCCCceEEEEeecCCCCc
Q 032659 6 ARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTF 85 (136)
Q Consensus 6 ~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~l~~~dg~~ 85 (136)
--...|+||||+|||+ +|+++|||||++ |+||+++||++||++|||++++|++|+||||||++|||+|++ +
T Consensus 13 ~~~~~~ivIyP~Y~Ds-~sr~eGRRVpk~--V~nP~~~EI~~a~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~~-~----- 83 (109)
T 3ktw_A 13 LKEENRIVIWPSYFFS-PTRSKGRRLARI--PYKIKTEELVSTLRELGLDPIVIENKKYPRDRKINFLIAVKK-V----- 83 (109)
T ss_dssp GGGGTEEEECTHHHHC-SSGGGTCCSSCC--SSCCCHHHHHHHHHHTTCCCEEECSCCCSSCTTCCCEEEEEC-S-----
T ss_pred HHhCCeEEEeecccCC-cchhcCCccccc--CCCCCHHHHHHHHHHcCCCeEEccCCCCCcccCCCCEEEEec-C-----
Confidence 3456899999999999 999999999999 999999999999999999999999999999999999999995 2
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCCCccC
Q 032659 86 VNPAISSRKQLMLHVAELVPRHPNRTK 112 (136)
Q Consensus 86 ~~~~~~~K~~Ll~~Ia~~I~~~~~r~~ 112 (136)
.+|.+||++||+.|++++.++.
T Consensus 84 -----~sK~~Llk~IA~~I~~~R~~~~ 105 (109)
T 3ktw_A 84 -----KSKNYTLKIIHNALMGTRQTNP 105 (109)
T ss_dssp -----SSHHHHHHHHHHHHCCC-----
T ss_pred -----CCHHHHHHHHHHHHHHhhccCC
Confidence 4899999999999999986653
No 6
>3l4r_A Allergen DOG 2, minor allergen CAN F 2; lipocalin allergen, disulfide bond, secreted, TRAN lipid binding protein; 1.45A {Canis familiaris}
Probab=59.71 E-value=9.7 Score=27.38 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=37.6
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCee
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHA 57 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~ 57 (136)
++|++++.++|-+-........----+++..-+....+++..++|+.+||+..
T Consensus 94 ~TDY~~yaiv~~~~~~~~~~~~~~~ll~R~~~~~~e~~~~f~~~~~~~Gl~~~ 146 (170)
T 3l4r_A 94 EVDPKSYLILYMINQYNDDTSLVAHLMVRDLSRQQDFLPAFESVCEDIGLHKD 146 (170)
T ss_dssp EEETTTEEEEEEEEEETTEEEEEEEEEESCGGGTTTTHHHHHHHHHHTTCCGG
T ss_pred EecCCcEEEEEEEeccCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHcCCCHH
Confidence 56899999998765543333333333455666778899999999999999753
No 7
>1xki_A VON ebner'S gland protein; beta barrel, ligand binding protein, transport protein; 1.80A {Homo sapiens} SCOP: b.60.1.1 PDB: 3eyc_A
Probab=53.92 E-value=19 Score=25.22 Aligned_cols=53 Identities=8% Similarity=0.040 Sum_probs=33.3
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCee
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHA 57 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~ 57 (136)
++|+..|.++|-+-........-.--++++.-+..-.++++.+.|+.+||+..
T Consensus 86 dtdY~~yaiv~~~~~~~g~~~~~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~ 138 (162)
T 1xki_A 86 RSHVKDHYIFYSEGELHGKPVRGVKLVGRDPKNNLEALEDFEKAAGARGLSTE 138 (162)
T ss_dssp ECSSTTEEEEEEEEC--CCCEEEEEEEESSSSCCCCCHHHHHHHHHHTTCTTS
T ss_pred EcCCCCEEEEEEEcccCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCHH
Confidence 46888898888553211111111123355556666788999999999999753
No 8
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.61 E-value=11 Score=24.83 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHHcCCCeeEe
Q 032659 37 CENPTCIEIADCCQYLKIPHAIE 59 (136)
Q Consensus 37 V~~Pt~~EI~~A~~~Lgl~~~vE 59 (136)
-..|+.+||.+++..+||+-.|-
T Consensus 27 n~~Ps~eei~~LA~~lgL~~~VV 49 (71)
T 2da7_A 27 NMEPNSDELLKISIAVGLPQEFV 49 (71)
T ss_dssp CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCHHHH
Confidence 35899999999999999987654
No 9
>3kff_A MUP 4, major urinary protein 4; pheromone, lipocalin, beta barrel, DI bond, pheromone-binding, secreted, transport, transport Pro; 0.96A {Mus musculus} SCOP: b.60.1.1 PDB: 3kfg_A 3kfh_A 3kfi_A 2l9c_A 2lb6_A 1i06_A 1i05_A* 1i04_A 1mup_A 1znd_A 1qy0_A* 1qy2_A* 1qy1_A 1zne_A 1zng_A 1znh_A 1znk_A* 1znl_A* 2dm5_A* 2ozq_A ...
Probab=44.31 E-value=11 Score=26.64 Aligned_cols=53 Identities=8% Similarity=0.056 Sum_probs=32.5
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCee
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHA 57 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~ 57 (136)
++|++.+.++|-+-..........--+++..-+....++++.++|+.+||+..
T Consensus 94 ~TdY~~yai~~~~~~~~~~~~~~~~ll~R~~~~~~~~~~~f~~~~~~~G~~~~ 146 (162)
T 3kff_A 94 KTDYDNYIMFHLINEKDGKTFQLMELYGRKADLNSDIKEKFVKLCEEHGIIKE 146 (162)
T ss_dssp EECSSSEEEEEEEEEETTEEEEEEEEEESSSCCCHHHHHHHHHHHHHTTCCGG
T ss_pred EeCCCeEEEEEEEecCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCHH
Confidence 57889999988543222211111122344445555567789999999999764
No 10
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=43.00 E-value=27 Score=22.65 Aligned_cols=49 Identities=6% Similarity=-0.018 Sum_probs=30.7
Q ss_pred ccCCC-CCHHHHHHHHHHcCCCeeEeccccCCcCcCCCceE-EEEeecCCCCcc
Q 032659 35 KACEN-PTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRV-RVMLKREDGTFV 86 (136)
Q Consensus 35 ~aV~~-Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRV-rV~l~~~dg~~~ 86 (136)
..|.. ..++++.+.|+..|++++.++... .|...|.. .+.+.|.||..+
T Consensus 73 ~~~~~~~d~~~~~~~l~~~G~~~~~~p~~~---~~~~~~~~~~~~~~DPdGn~i 123 (135)
T 3rri_A 73 ITFRDKKHFDNLYKLAKQRGIPFYHDLSRR---FEGLIEEHETFFLIDPSNNLL 123 (135)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEEEEEE---STTSTTCEEEEEEECTTCCEE
T ss_pred EEEcChHhHHHHHHHHHHcCCceecCcccc---cCCCCCceEEEEEECCCCCEE
Confidence 34444 458888888899999987765432 12223332 355678888754
No 11
>3e5d_A Putative glyoxalase I; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 2.70A {Listeria monocytogenes str}
Probab=42.40 E-value=33 Score=21.62 Aligned_cols=50 Identities=10% Similarity=-0.001 Sum_probs=32.3
Q ss_pred cchhccCCCCC-HHHHHHHHHHcCCCeeEeccccCCcCcCCCceEEEEeecCCCCcc
Q 032659 31 ISASKACENPT-CIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFV 86 (136)
Q Consensus 31 V~k~~aV~~Pt-~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~l~~~dg~~~ 86 (136)
......|+++. ++++.+.++..|+++..++.. + ..|.-.+.+.|.||..+
T Consensus 73 ~hi~~~v~d~~~v~~~~~~l~~~G~~~~~~~~~-~-----~~g~~~~~~~DPdG~~i 123 (127)
T 3e5d_A 73 AHIAISTGTKEAVDELTEKLRQDGFAIAGEPRM-T-----GDGYYESVVLDPEGNRI 123 (127)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHTTCCEEEEEEE-C-----TTSCEEEEEECTTSCEE
T ss_pred EEEEEEcCCHHHHHHHHHHHHHcCCeEecCccc-C-----CCCcEEEEEECCCCCEE
Confidence 34455566655 889999999999998766432 2 12433344578888654
No 12
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A*
Probab=40.97 E-value=13 Score=25.78 Aligned_cols=51 Identities=6% Similarity=-0.071 Sum_probs=30.6
Q ss_pred ccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe
Q 032659 6 ARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 6 ~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 56 (136)
+++.++.|||-+-+....++.-.=-++++.-+..-.++++.+.|+.+||+.
T Consensus 92 tdy~~Y~i~~~~~~~~~~~~~~~~llsR~~~l~~~~~~~~~~~~~~~G~~~ 142 (164)
T 1epa_A 92 TDYLTYAIIDITSLVAGAVHRTMKLYSRSLDDNGEALYNFRKITSDHGFSE 142 (164)
T ss_dssp ECSSSEEEEEEEEEETTEEEEEEEEEESCSSCCHHHHHHHHHHHHHTTCCG
T ss_pred cCCCCEEEEEEEeccCCeeeEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 577888888766433322222222234444444445777888999999975
No 13
>3bx8_A Engineered human lipocalin 2; protein design, ligand binding protein, de novo protein, protein binding; HET: 1PE PE5; 2.00A {Homo sapiens} PDB: 3bx7_A* 3dtq_A 3dsz_A* 1l6m_A* 3tf6_A* 1x71_A* 1x89_A* 1x8u_A* 3fw4_A 3fw5_A 3k3l_A* 3pec_A* 3ped_A* 3tzs_A* 1ngl_A 1dfv_A* 1qqs_A*
Probab=40.08 E-value=16 Score=25.92 Aligned_cols=52 Identities=6% Similarity=0.091 Sum_probs=29.2
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 56 (136)
++|+++|.+||=|--.........=-++++.-+..-.++++.++|+.+||..
T Consensus 112 dtDY~~yaiv~~c~~~~~~~~~~~~llsR~~~l~~~~~~~~~~~~~~~G~~~ 163 (178)
T 3bx8_A 112 STDYNQYAVVFFKLAEDNAEFFAITIYGRTKELASELKENFIRFSKSLGLPE 163 (178)
T ss_dssp EECSSSEEEEEEEECC--CCEEEEEEEESSSCCCHHHHHHHHHHHHHTTCCG
T ss_pred EcCCCCEEEEEEEEccCCeeEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 4688899999955322211111111223333333334788889999999974
No 14
>2hzq_A Apolipoprotein D, APO-D, APOD; lipocalin, beta barrel, bilin-binding protein, transport protein; HET: STR; 1.80A {Homo sapiens} PDB: 2hzr_A
Probab=38.49 E-value=16 Score=25.98 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=28.5
Q ss_pred cccccCeEEEeccc-ccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe
Q 032659 5 TARIKKWVILYPVY-INSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y-~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 56 (136)
++|+++|.+||=+- ++......-.=-++++.-+..-.++++.++|+.+||+.
T Consensus 100 ~tDyd~yAiv~~~~~~~~~~~~~~~~ilsR~~~~~~~~~~~~~~~~~~~G~~~ 152 (174)
T 2hzq_A 100 ATDYENYALVYSCTSISQSFHVDFAWILARNVALPPETVDSLKNILTSNNIDV 152 (174)
T ss_dssp EECSSSEEEEEEEEESSTTEEEEEEEEEESSSCCCHHHHHHHHHHHHHTTCCC
T ss_pred EECCCCEEEEEecccCCCcccceEEEEEECCCCCCHHHHHHHHHHHHHcCCCH
Confidence 35677888888543 22211112222333333333334688889999999864
No 15
>3qkg_A Protein AMBP; beta barrel, binding protein, bound chromophore, human plasm system; 2.30A {Homo sapiens}
Probab=37.63 E-value=20 Score=26.20 Aligned_cols=52 Identities=8% Similarity=0.102 Sum_probs=33.2
Q ss_pred cccccCeEEEeccccc-CCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe
Q 032659 5 TARIKKWVILYPVYIN-SKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~D-s~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 56 (136)
++|++++.++|=+-.+ ........--++++.-+....++++.++|+.+||..
T Consensus 105 ~TDY~~yaivy~~~~~~~g~~~~~~~llsR~~~l~~e~~~~f~~~~~~~G~~~ 157 (193)
T 3qkg_A 105 HTNYDEYAIFLTKKFSRHHGPTITAKLYGRAPQLRETLLQDFRVVAQGVGIPE 157 (193)
T ss_dssp EECSSSEEEEEEEECCSSSSCEEEEEEEESSSCCCHHHHHHHHHHHHHTTCCS
T ss_pred ecCCccEEEEEEEccccCCceEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 4688899999877532 222222222234444555556788999999999965
No 16
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A*
Probab=37.29 E-value=17 Score=25.36 Aligned_cols=52 Identities=8% Similarity=0.109 Sum_probs=31.6
Q ss_pred cccccCeEEEeccccc-CCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe
Q 032659 5 TARIKKWVILYPVYIN-SKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~D-s~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 56 (136)
++|+++|.+||-+-.. ......-.=-++++.-+..-.++++.+.|+.+||+.
T Consensus 94 ~tdY~~yaivy~~~~~~~~~~~~~~~llsR~~~~~~~~~~~f~~~~~~~G~~~ 146 (162)
T 3o22_A 94 ETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTE 146 (162)
T ss_dssp EECSSSEEEEEEEEEESGGGGCEEEEEEESSSSCCHHHHHHHHHHHHHTTCCG
T ss_pred EeCCCcEEEEEEEEecCCCceEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 4688899999866432 111111112233444444446788999999999975
No 17
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL, enterobactin, glycoprotein, pyrroli carboxylic acid, secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A* 3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A 3t1d_A* 3by0_A*
Probab=37.28 E-value=16 Score=26.43 Aligned_cols=53 Identities=6% Similarity=0.083 Sum_probs=31.0
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCee
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHA 57 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~ 57 (136)
++||++|.++|-+-........-.--++++.-+..-..+++.+.++.+||+..
T Consensus 132 dtdY~~yaiv~~~~~~~g~~~~~~~llsR~~~l~~e~~~~f~~~~~~~G~~~~ 184 (198)
T 3cbc_A 132 STNYNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFIRFSKSLGLPEN 184 (198)
T ss_dssp EECSSSEEEEEEEEEETTEEEEEEEEEESSSCCCHHHHHHHHHHHHHTTCCGG
T ss_pred EcCCCcEEEEEEEeccCCEEEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCHH
Confidence 46888999998653311111122122233333433457888899999999753
No 18
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} SCOP: b.60.1.1 PDB: 2k23_A
Probab=37.17 E-value=16 Score=26.61 Aligned_cols=52 Identities=8% Similarity=0.042 Sum_probs=31.5
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 56 (136)
++||++|.++|-+-..........--++++.-+....++++.+.|+.+||+.
T Consensus 114 ~tDY~~yaiv~~~~~~~~~~~~~~~llsR~~~l~~e~~~~f~~~~~~~G~~~ 165 (190)
T 3s26_A 114 TTDYNQFAMVFFRKTSENKQYFKITLYGRTKELSPELKERFTRFAKSLGLKD 165 (190)
T ss_dssp EECSSSEEEEEEEEEETTEEEEEEEEEESSSCCCHHHHHHHHHHHHHTTCCG
T ss_pred EeCCCcEEEEEEEEecCCccEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 4678888888865432221111111234444454556778999999999976
No 19
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=36.67 E-value=15 Score=25.86 Aligned_cols=53 Identities=9% Similarity=0.144 Sum_probs=33.0
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCee
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHA 57 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~ 57 (136)
++|+++|.+||=+-..........--++++.-+....+++..+.|+.+||+..
T Consensus 88 ~tdY~~yaiv~~~~~~~~~~~~~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~ 140 (160)
T 3sao_A 88 DTDYKSYAVIFATRVKDGRTLHMMRLYSRSREVSPTAMAIFRKLARERNYTDE 140 (160)
T ss_dssp EECSSSEEEEEEEEEETTEEEEEEEEEESSSSCCHHHHHHHHHHHHTTTCCGG
T ss_pred EcCCCcEEEEEEEeccCCceEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCHH
Confidence 46888898887543222222222122344455555678999999999999754
No 20
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1
Probab=35.59 E-value=24 Score=24.32 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=29.9
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 56 (136)
++|+..+.+||=+-.....+..-.--++++.-+..-.++++.++++.+||+.
T Consensus 91 ~tdY~~yaiv~~~~~~~g~~~~~~~llsR~~~~~~~~~~~f~~~~~~~G~~~ 142 (159)
T 1ew3_A 91 EFENDEHIILYLVNFDKDRPFQLFEFYAREPDVSPEIKEEFVKIVQKRGIVK 142 (159)
T ss_dssp EESSTTEEEEEEEECCSSCCEEEEEEEESSSSCCHHHHHHHHHHHHHTTCCG
T ss_pred EecCCcEEEEEEEEcCCCeEEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 4688887777743221111111112334444444445688899999999975
No 21
>1gka_B Crustacyanin A2 subunit; lipocalin, lobster, astaxanthin, bathochromic, coloration; HET: AXT D12 EPE; 3.23A {Homarus gammarus} SCOP: b.60.1.1
Probab=35.38 E-value=24 Score=24.77 Aligned_cols=52 Identities=8% Similarity=0.058 Sum_probs=31.1
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 56 (136)
++|+++|.+||=+--.......-.=-++++.-+..-.++++.++|+.+||+.
T Consensus 107 ~tDy~~yAiv~~~~~~~~~~~~~~~llsR~~~~~~~~~~~~~~~~~~~G~~~ 158 (174)
T 1gka_B 107 ETDYETYSCVYSCITTDNYKSEFAFVFSRTPQTSGPAVEKTAAVFNKNGVEF 158 (174)
T ss_dssp EECSSSEEEEEEEEECSSEEEEEEEEEESSCCSSSHHHHHHHHHHHHHTCCG
T ss_pred EecCCCEEEEEeccccCCccceEEEEEECCCCCCHHHHHHHHHHHHHcCCCH
Confidence 3567788888854322222222223334444444445788999999999874
No 22
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=34.60 E-value=12 Score=30.14 Aligned_cols=52 Identities=12% Similarity=0.064 Sum_probs=36.8
Q ss_pred cCcccccccchhccCCCCCHHHHHHHHH-HcCCCeeE-e-----ccccCCcCcCC--CceEEE
Q 032659 23 KTIAEGRRISASKACENPTCIEIADCCQ-YLKIPHAI-E-----IDKAYPRDFMQ--RGRVRV 76 (136)
Q Consensus 23 ~sr~eGRRV~k~~aV~~Pt~~EI~~A~~-~Lgl~~~v-E-----~~K~yPrdw~~--~GRVrV 76 (136)
.+-.++..+..+.|++ ..++++++++ .+|+++.+ + ||-.|||||.. .|.|.+
T Consensus 53 ~~~~~~~~~d~~~A~~--q~~~l~~~Lr~~~Gv~V~~l~~~~~~Pd~vF~rD~~~vi~~~vii 113 (308)
T 3i4a_A 53 LRSAKGEEVDVARAER--QHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALI 113 (308)
T ss_dssp CCSSCCCCCCHHHHHH--HHHHHHHHHHTTTCCEEEEECCCTTCTTTTCGGGGEEEETTEEEE
T ss_pred cccccCCCCCHHHHHH--HHHHHHHHHhhcCCCEEEEcCCCCCCCCeEeecCeEEEECCEEEE
Confidence 4444566677788866 7889999999 99998864 3 35677888863 455444
No 23
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus norvegicus}
Probab=34.49 E-value=20 Score=25.79 Aligned_cols=53 Identities=8% Similarity=0.055 Sum_probs=29.5
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCee
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHA 57 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~ 57 (136)
++||++|.+||=+--.......-.=-++++.-+..-.++++.++++.+||+..
T Consensus 107 dtDY~~yaivy~~~~~~g~~~~~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~ 159 (184)
T 2l5p_A 107 ETDYVKFALVLSLRQASNQNITRVSLLGRDWKITHKTIDRFIALTKTQNLTKN 159 (184)
T ss_dssp EEETTTEEEEEEEEECSSCEEEEEEEEESSSCCCHHHHHHHHHHHHHTTCCGG
T ss_pred ecCCCCEEEEEEEeccCCeeEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCChH
Confidence 46788888888762211111111112233333333347788899999999753
No 24
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=33.33 E-value=14 Score=24.55 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=26.0
Q ss_pred CCeeEeccccCCcCc---CCCceEEEEee-cCCCCccCCCC
Q 032659 54 IPHAIEIDKAYPRDF---MQRGRVRVMLK-REDGTFVNPAI 90 (136)
Q Consensus 54 l~~~vE~~K~yPrdw---~~~GRVrV~l~-~~dg~~~~~~~ 90 (136)
+...+..+..||+.- -..|+|.|.+. +.||...+..+
T Consensus 19 ~~~~~~~~~~YP~~A~~~~~eG~V~v~f~I~~~G~v~~~~v 59 (106)
T 2k9k_A 19 AMPLYRVEPVYPSRALKRGVEGFVTLSFTIDTTGKAVDINV 59 (106)
T ss_dssp CCCSSCSSCCCCSHHHHHCCCCEEEEEEEEETTTEEEEEEE
T ss_pred ceEeccCCCCCCHHHHHcCCeeEEEEEEEECCCCcEEEEEE
Confidence 344566688899863 35899999874 67998766544
No 25
>1beb_A Beta-lactoglobulin; lipocalin, MILK WHEY protein, bovine, retinol-binding; 1.80A {Bos taurus} SCOP: b.60.1.1 PDB: 3nq3_A* 1b0o_A 1bsq_A 1gx8_A* 1gx9_A* 1gxa_A* 2gj5_A* 2r56_A* 3npo_A 1b8e_A* 3nq9_A* 3qzj_A* 3qzk_A* 3ueu_A* 3uev_A* 3uew_A* 3uex_A* 4dq3_A* 4dq4_A* 1qg5_A ...
Probab=32.77 E-value=19 Score=25.06 Aligned_cols=53 Identities=6% Similarity=0.048 Sum_probs=30.3
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCee
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHA 57 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~ 57 (136)
++|+++|.+||=+-........-.--++++.-+..-.++++.++++.+||...
T Consensus 96 ~tDy~~yaiv~~~~~~~~~~~~~~~llsR~~~~~~~~~~~f~~~~~~~g~~~~ 148 (162)
T 1beb_A 96 DTDYKKYLLFCMENSAEPEQSLVCQCLVRTPEVDDEALEKFDKALKALPMHIR 148 (162)
T ss_dssp EECSSSEEEEEEECTTCGGGTCEEEEEESSSSCCHHHHHHHHHHHTTSCCCEE
T ss_pred ecCCCcEEEEEEEecCCCceEEEEEEEecCCCCCHHHHHHHHHHHHHCCCCHH
Confidence 45788899988664322111111122233333434456788888999998764
No 26
>2a2u_A Protein (alpha-2U-globulin); lipid binding protein; 2.50A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 2a2g_A
Probab=31.50 E-value=20 Score=25.23 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=30.9
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 56 (136)
++|+++|.+||=+-++...++.-.--++++.-+..-..+++.++++.+||+.
T Consensus 113 ~tDy~~yaiv~~~~~~~~~~~~~~~llsR~~~~~~~~~~~f~~~~~~~G~~~ 164 (181)
T 2a2u_A 113 KTDYDRYVMFHLINFKNGETFQLMVLYGRTKDLSSDIKEKFAKLCEAHGITR 164 (181)
T ss_dssp EECSSSEEEEEEEEEETTEEEEEEEEEESSSSCCHHHHHHHHHHHHTTTCCG
T ss_pred EecCCcEEEEEEEEcCCCeEEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCH
Confidence 4577788888764333222222222234444444445788889999999975
No 27
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A
Probab=31.34 E-value=20 Score=25.04 Aligned_cols=52 Identities=4% Similarity=-0.049 Sum_probs=30.8
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 56 (136)
++|+..|.++|=+-.....+..-.--++++.-+..-.++++.+.++.+||+.
T Consensus 103 ~tdY~~yaiv~~~~~~~~~~~~~~~llsR~~~~~~e~~~~f~~~~~~~G~~~ 154 (166)
T 2ra6_A 103 SSKPNEYAKFIFYNYHDGKVNVVANLFGRTPNLSNEIKKRFEEDFMNRGFRR 154 (166)
T ss_dssp CSSTTTEEEEEEEEEETTEEEEEEEEEESSSCCCHHHHHHHHHHHHTTTCCG
T ss_pred EcCCCcEEEEEEEEcCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHcCCCH
Confidence 5688888888755332222222222234444444445678888999999875
No 28
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=31.16 E-value=45 Score=21.07 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=30.5
Q ss_pred ccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcCCCceEEEEeecCCCCcc
Q 032659 35 KACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFV 86 (136)
Q Consensus 35 ~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~l~~~dg~~~ 86 (136)
..|++ .++++.+.|+..|+.+..++.. +.|...+.-.+.+.|.||..+
T Consensus 78 ~~v~d-d~~~~~~~l~~~G~~~~~~~~~---~~~~~g~~~~~~~~DPdG~~i 125 (133)
T 3ey7_A 78 FITDT-VLSDAMKHVEDQGVTIMEGPVK---RTGAQGAITSFYFRDPDGNLI 125 (133)
T ss_dssp EECSS-CHHHHHHHHHHTTCCCCEEEEE---EEETTEEEEEEEEECTTCCEE
T ss_pred EEeCc-HHHHHHHHHHHCCCccccCCcc---ccCCCCCeEEEEEECCCCCEE
Confidence 44543 5999999999999998766532 233332223444568888643
No 29
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=30.60 E-value=1.6e+02 Score=22.19 Aligned_cols=57 Identities=14% Similarity=0.033 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHcCCCeeEeccccCCcC---------------cCCCceEEEEeecCCCCccCCCCCCHHHHHHHHHH
Q 032659 38 ENPTCIEIADCCQYLKIPHAIEIDKAYPRD---------------FMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAE 102 (136)
Q Consensus 38 ~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrd---------------w~~~GRVrV~l~~~dg~~~~~~~~~K~~Ll~~Ia~ 102 (136)
.=||++|+.+.+...++...|| =|.+|.. +....||.|..++ ...|..+.+
T Consensus 96 ~iptL~evl~~~~~~~~~l~iE-iK~~~~~~~~~~~~v~~~l~~~~~~~~~vii~SF~-------------~~~l~~~~~ 161 (252)
T 3qvq_A 96 TIPTLLEAIEVISQYGMGLNLE-LKPCEGLEEETIAASVEVLKQHWPQDLPLLFSSFN-------------YFALVSAKA 161 (252)
T ss_dssp CCCBHHHHHHHHHHTTCEEEEE-ECCCTTCHHHHHHHHHHHHHHHSCTTSCEEEEESC-------------HHHHHHHHH
T ss_pred cCcCHHHHHHHHhccCcEEEEE-ecCCCCccHHHHHHHHHHHHHhCcccCCEEEEeCC-------------HHHHHHHHH
Confidence 4599999999998777777777 3555432 1123578888665 345666666
Q ss_pred HhhcCC
Q 032659 103 LVPRHP 108 (136)
Q Consensus 103 ~I~~~~ 108 (136)
..|.++
T Consensus 162 ~~p~~~ 167 (252)
T 3qvq_A 162 LWPEIA 167 (252)
T ss_dssp HCTTSC
T ss_pred HCCCCc
Confidence 666554
No 30
>1i4u_A Crustacyanin; lipocalin fold, antiparallel beta barrel, transport protein; 1.15A {Synthetic} SCOP: b.60.1.1 PDB: 1obq_A 1obu_A 1s2p_A 1h91_A 1gka_A 1s44_A
Probab=30.20 E-value=26 Score=25.25 Aligned_cols=52 Identities=8% Similarity=0.015 Sum_probs=31.7
Q ss_pred cccccCeEEEecccccC-CcCcccccccchhccCCCCCHHHHHHHHHHcCCCe
Q 032659 5 TARIKKWVILYPVYINS-KKTIAEGRRISASKACENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds-~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 56 (136)
++|+.++.++|=|-... .....-.=-++++.-+....++++.++++.+||+.
T Consensus 109 ~tDY~~Ya~~y~C~~~~~~~~~~~~~iLsR~~~~~~~~~~~~~~~~~~~G~d~ 161 (181)
T 1i4u_A 109 ETDYSNYACLYSCIDYNFGYHSDFSFIFSRSANLADQYVKKCEAAFKNINVDT 161 (181)
T ss_dssp EECSSSEEEEEEEEECTTSEEEEEEEEEESSSSCCHHHHHHHHHHHHHTTCCG
T ss_pred EECCCCeEEEEEEEecCCCccccEEEEEEcCCCCCHHHHHHHHHHHHHcCCCH
Confidence 35677888887664433 22233333344444444445678899999999974
No 31
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=30.02 E-value=55 Score=22.35 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHcCCCeeEeccccCCcCcCCCceEEEEe
Q 032659 39 NPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVML 78 (136)
Q Consensus 39 ~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~l 78 (136)
+|++..+..+|..||++..+-... .+..-..|+|.|-+
T Consensus 80 ~~s~~~l~~ia~~Lgv~~~~l~~~--~~~~~~~g~~~~~~ 117 (120)
T 2o38_A 80 GFSVERLMTLLNALDQDVEIVIRK--KPRSRAAARISVVA 117 (120)
T ss_dssp TCCHHHHHHHHHHTTEEEEEEEEE--CCTTCSCCCEEEEE
T ss_pred CCCHHHHHHHHHHhCCCcEEeecC--CCcccccCceEEee
Confidence 799999999999999876543211 11122468888764
No 32
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=30.01 E-value=37 Score=21.76 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=23.9
Q ss_pred eEeccccCCcCc---CCCceEEEEee-cCCCCccCCCC
Q 032659 57 AIEIDKAYPRDF---MQRGRVRVMLK-REDGTFVNPAI 90 (136)
Q Consensus 57 ~vE~~K~yPrdw---~~~GRVrV~l~-~~dg~~~~~~~ 90 (136)
+...+..||..- ...|+|.|.+. +.||...+..+
T Consensus 7 l~~~~~~YP~~a~~~~~~G~V~v~~~i~~~G~v~~~~v 44 (90)
T 1u07_A 7 LSRNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQI 44 (90)
T ss_dssp EECCCCCCCHHHHHHTCCEEEEEEEEECTTSCEEEEEE
T ss_pred cccCCCCCcHHHHHCCCceEEEEEEEECCCCCEEEEEE
Confidence 444567899853 35899999874 67998766544
No 33
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=28.94 E-value=48 Score=26.36 Aligned_cols=46 Identities=4% Similarity=0.068 Sum_probs=33.7
Q ss_pred CeEEEecccccC-CcCcccccc-cchhccCCCCCHHHHHHHHHHcCCCeeEec
Q 032659 10 KWVILYPVYINS-KKTIAEGRR-ISASKACENPTCIEIADCCQYLKIPHAIEI 60 (136)
Q Consensus 10 ~~~vIYP~Y~Ds-~~sr~eGRR-V~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~ 60 (136)
...+||=+|||+ .+|.-.+-+ +..+.. +..+.++|+++||++..|.
T Consensus 35 ~~~~v~k~~f~KapRTs~~sf~G~g~~~G-----L~~l~~~~~e~Glp~~te~ 82 (267)
T 2nwr_A 35 EVEFVFKSSFDKANRSSIHSFRGHGLEYG-----VKALRKVKEEFGLKITTDI 82 (267)
T ss_dssp TEEEEEECBSCCTTCSSTTSCCCSCHHHH-----HHHHHHHHHHHCCEEEEEC
T ss_pred CccEEEeeccccCCCCCCCCCcCccHHHH-----HHHHHHHHHhcCCeEEEec
Confidence 366799999999 887755432 111222 6678999999999999885
No 34
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=28.93 E-value=68 Score=25.12 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=28.7
Q ss_pred cCCcCcCCCceEEEEeecCCCCccCCCCCCHHHHHHHHHHHhhcCCC
Q 032659 63 AYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPN 109 (136)
Q Consensus 63 ~yPrdw~~~GRVrV~l~~~dg~~~~~~~~~K~~Ll~~Ia~~I~~~~~ 109 (136)
+||+.+..+.=|.|...++ ...+... .=++++-.+|..|+++|.
T Consensus 153 SHpv~~~iP~GI~v~v~~~-t~Iii~G--iDKq~Vgq~AA~IR~~R~ 196 (223)
T 3bbo_I 153 SHPVKMQIPDSLKVKVEEN-TRITVSG--YDKSEIGQFAATVRKWRP 196 (223)
T ss_dssp SSCEEEECCSSEEEECSST-TBCEEEE--SSSHHHHHHHHHTTSSSC
T ss_pred CccEEEECCCCeEEEeCCC-CEEEEEe--CCHHHHHHHHHHHhccCC
Confidence 6888877655577775432 2222222 335788999999999974
No 35
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=28.82 E-value=1.1e+02 Score=19.71 Aligned_cols=65 Identities=11% Similarity=0.027 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHcCCCeeEeccc-----cCCcCcCCCceEEEEeecCCCCccCCCCCCHHHHHHHHHHHhh
Q 032659 40 PTCIEIADCCQYLKIPHAIEIDK-----AYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVP 105 (136)
Q Consensus 40 Pt~~EI~~A~~~Lgl~~~vE~~K-----~yPrdw~~~GRVrV~l~~~dg~~~~~~~~~K~~Ll~~Ia~~I~ 105 (136)
+...++.+.++..++++.+-.+. ..-+.|...|-=.+-+.|.+|..+.... +..+|...|.+.|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-~~~~l~~~l~~ll~ 146 (148)
T 3fkf_A 77 IDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARDI-QGEALTGKLKELLK 146 (148)
T ss_dssp SCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC-CHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEecC-CHHHHHHHHHHHHc
Confidence 34578888888888877654332 1112233333333334466777665544 78888888888765
No 36
>2nly_A BH1492 protein, divergent polysaccharide deacetylase hypothetical; PFAM04748, structural PSI, protein structure initiative; 2.50A {Bacillus halodurans} SCOP: c.6.2.7
Probab=28.38 E-value=48 Score=26.04 Aligned_cols=58 Identities=12% Similarity=0.024 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHcCCCeeEe----ccccCCcCcCCCceEEEEeecCCCCccCCCCCCHHHHHHHHHHHhhcCCC
Q 032659 38 ENPTCIEIADCCQYLKIPHAIE----IDKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPN 109 (136)
Q Consensus 38 ~~Pt~~EI~~A~~~Lgl~~~vE----~~K~yPrdw~~~GRVrV~l~~~dg~~~~~~~~~K~~Ll~~Ia~~I~~~~~ 109 (136)
.-|...++++.+++.|.++.+. + ..||..|..+|-+.+.. +..++...|...|..++.
T Consensus 37 ~~p~~~~~a~~A~~~G~EvllHlPMep-~~~~~~~~gp~~L~~~~-------------s~~ei~~~l~~al~~vP~ 98 (245)
T 2nly_A 37 FLEHSTKQAEIAQAAGLEVIVHMPLEP-KKGKISWLGPSGITSNL-------------SVGEVKSRVRKAFDDIPY 98 (245)
T ss_dssp SSTTHHHHHHHHHHTTCEEEEEEEECC-C--------CCCBCTTC-------------CHHHHHHHHHHHHHHSTT
T ss_pred CCCCHHHHHHHHHHCCCEEEEEcCCCC-CCCCCCCCCcccCcCCC-------------CHHHHHHHHHHHHHHCCC
Confidence 5689999999999999998754 4 45888887677665542 456666666666666654
No 37
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=28.37 E-value=70 Score=20.94 Aligned_cols=48 Identities=8% Similarity=0.089 Sum_probs=32.5
Q ss_pred cchhccCCCCCHHHHHHHHHHcCCC-eeEeccccCCcCcCCCceEEEEeecCCCCccC
Q 032659 31 ISASKACENPTCIEIADCCQYLKIP-HAIEIDKAYPRDFMQRGRVRVMLKREDGTFVN 87 (136)
Q Consensus 31 V~k~~aV~~Pt~~EI~~A~~~Lgl~-~~vE~~K~yPrdw~~~GRVrV~l~~~dg~~~~ 87 (136)
+.....|++ ++++.+.++.+|.+ ++.++.. .| | |+. +.+.|.||..+.
T Consensus 68 ~~l~f~v~d--vd~~~~~l~~~G~~~~~~~p~~-~~--~---G~~-~~~~DPdGn~ie 116 (128)
T 3g12_A 68 LQLGFQITD--LEKTVQELVKIPGAMCILDPTD-MP--D---GKK-AIVLDPDGHSIE 116 (128)
T ss_dssp EEEEEEESC--HHHHHHHHTTSTTCEEEEEEEE-CC------CEE-EEEECTTCCEEE
T ss_pred eEEEEEeCC--HHHHHHHHHHCCCceeccCcee-CC--C---ccE-EEEECCCCCEEE
Confidence 334555655 99999999999999 6656432 22 3 554 667799997653
No 38
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=27.71 E-value=86 Score=20.28 Aligned_cols=46 Identities=17% Similarity=0.057 Sum_probs=30.7
Q ss_pred hccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcCCCceEEEEeecCCCCcc
Q 032659 34 SKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFV 86 (136)
Q Consensus 34 ~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~l~~~dg~~~ 86 (136)
...|..-.++++.+.|+..|++++.++.. + ..|+ .+.+.|.||..+
T Consensus 101 ~~~v~~~d~~~~~~~l~~~G~~~~~~~~~-~-----~~g~-~~~~~DPdG~~i 146 (156)
T 3kol_A 101 AFDIDPQLFDRAVTVIGENKIAIAHGPVT-R-----PTGR-GVYFYDPDGFMI 146 (156)
T ss_dssp EEECCGGGHHHHHHHHHHTTCCEEEEEEE-C------CCE-EEEEECTTSCEE
T ss_pred EEEecHHHHHHHHHHHHHCCCccccCcee-c-----CCcc-EEEEECCCCCEE
Confidence 34454447999999999999998755432 2 2355 555678888753
No 39
>3rhe_A NAD-dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, SGX; 2.05A {Legionella pneumophila}
Probab=27.05 E-value=1.1e+02 Score=20.52 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=31.0
Q ss_pred cccchhccCCC-CCHHHHHHHHHHcCCCeeEeccccCCcCcCCCceEEEEeecCCCCcc
Q 032659 29 RRISASKACEN-PTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFV 86 (136)
Q Consensus 29 RRV~k~~aV~~-Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~l~~~dg~~~ 86 (136)
..+.....|++ -.++++.+.+...|++++.++.. . .| || .+.+.|.||..+
T Consensus 67 ~~~~l~f~v~d~~dvd~~~~~l~~~G~~i~~~p~~-~--~~---G~-~~~~~DPdG~~i 118 (148)
T 3rhe_A 67 GGMELSFQVNSNEMVDEIHRQWSDKEISIIQPPTQ-M--DF---GY-TFVGVDPDEHRL 118 (148)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHTTCCEEEEEEE-E--TT---EE-EEEEECTTCCEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHHhCCCEEEeCCee-c--CC---Cc-EEEEECCCCCEE
Confidence 33444455554 23888888888999998766532 1 23 64 344468888753
No 40
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens}
Probab=26.24 E-value=22 Score=24.33 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=28.3
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 56 (136)
++|+.+|.+||=+--.......-.--++++.-+..-.++++.++++.+||+.
T Consensus 97 ~tdY~~yaiv~~~~~~~~~~~~~~~llsR~~~~~~~~~~~~~~~~~~~G~~~ 148 (161)
T 2xst_A 97 DTDYSSFAVLYIYKELEGALSTMVQLYSRTQDVSPQALKSFQDFYPTLGLPK 148 (161)
T ss_dssp EECSSSEEEEEEEEEETTEEEEEEEEEESSSSCCHHHHHHHHHHGGGGTCCG
T ss_pred EcCCCCEEEEEEEEccCCeEEEEEEEEccCCCCCHHHHHHHHHHHHHcCCCH
Confidence 4678888888855311111111112223333333334678888889999865
No 41
>2i7r_A Conserved domain protein; structural genomics conserved domain, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae} SCOP: d.32.1.2
Probab=25.98 E-value=81 Score=19.73 Aligned_cols=46 Identities=9% Similarity=-0.055 Sum_probs=29.5
Q ss_pred ccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcCCCceEEEEeecCCCCcc
Q 032659 35 KACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFV 86 (136)
Q Consensus 35 ~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~l~~~dg~~~ 86 (136)
.|+.-..++++.+.|...|++++.++.. +| | .++. +.+.|.||..+
T Consensus 67 ~~~~v~d~~~~~~~l~~~G~~~~~~~~~-~~--~--g~~~-~~~~DPdG~~i 112 (118)
T 2i7r_A 67 IHIEVEDVDQNYKRLNELGIKVLHGPTV-TD--W--GTES-LLVQGPAGLVL 112 (118)
T ss_dssp EEEECSCHHHHHHHHHHHTCCEEEEEEE-CT--T--SCEE-EEEECGGGCEE
T ss_pred EEEEECCHHHHHHHHHHCCCceecCCcc-cc--C--ccEE-EEEECCCccEE
Confidence 4444457999999999999998666432 33 3 1233 34568787643
No 42
>2qv5_A AGR_C_5032P, uncharacterized protein ATU2773; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Agrobacterium tumefaciens str}
Probab=25.90 E-value=1e+02 Score=24.40 Aligned_cols=60 Identities=8% Similarity=-0.045 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHcCCCeeEec---cccCCcCcCCCceEEEEeecCCCCccCCCCCCHHHHHHHHHHHhhcCCC
Q 032659 37 CENPTCIEIADCCQYLKIPHAIEI---DKAYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPRHPN 109 (136)
Q Consensus 37 V~~Pt~~EI~~A~~~Lgl~~~vE~---~K~yPrdw~~~GRVrV~l~~~dg~~~~~~~~~K~~Ll~~Ia~~I~~~~~ 109 (136)
=..|...++++.+.+.|.++.+.- -..||..|..+|-+.+.. +..++...|...+..++.
T Consensus 63 P~~p~~~~~a~~A~~~G~EvllHlPMep~~~p~~~~gp~~L~~~~-------------s~~ei~~~l~~al~~vP~ 125 (261)
T 2qv5_A 63 ASGNSLQRWMQDARREGHEILLQIPLEPFGYPGTNPGPDTLLAGD-------------PAKVNIDRLHRSMAKITN 125 (261)
T ss_dssp TTCSSHHHHHHHHHHHTCCEEEEEEECCTTTTTSCCCTTCBCTTS-------------CHHHHHHHHHHHHTTCCC
T ss_pred CCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCcCcCcCCC-------------CHHHHHHHHHHHHHHCCC
Confidence 346889999999999999988541 245888776677665542 566677777766666654
No 43
>3bt3_A Glyoxalase-related enzyme, ARAC type; VOC superfamily, PSI-2, NYSGXRC, structural genomics, prote structure initiative; 2.50A {Clostridium phytofermentans}
Probab=23.59 E-value=97 Score=20.49 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHcCCCeeEeccccCCcCcCCCceEEEEeecCCCCcc
Q 032659 38 ENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFV 86 (136)
Q Consensus 38 ~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~l~~~dg~~~ 86 (136)
.-..++++.+.|...|++++.++. .+| | |.-.+.+.|.||..+
T Consensus 97 ~v~dvd~~~~~l~~~G~~~~~~~~-~~~--~---g~~~~~~~DPdG~~i 139 (148)
T 3bt3_A 97 MIEGIDALHKYVKENGWDQISDIY-TQP--W---GARECSITTTDGCIL 139 (148)
T ss_dssp EEECHHHHHHHHHHTTCCCBCCCE-EET--T---TEEEEEEECTTSCEE
T ss_pred EcCCHHHHHHHHHHcCCccccCcc-cCC--C---ccEEEEEECCCCCEE
Confidence 345799999999999998765542 233 2 433345578888754
No 44
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=23.26 E-value=71 Score=19.12 Aligned_cols=21 Identities=10% Similarity=0.181 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHcCCCeeEecc
Q 032659 41 TCIEIADCCQYLKIPHAIEID 61 (136)
Q Consensus 41 t~~EI~~A~~~Lgl~~~vE~~ 61 (136)
...+|.+++..+|+.+.+..+
T Consensus 59 ~~~~i~~~i~~~Gy~~~~~~~ 79 (84)
T 1q8l_A 59 SVEEMKKQIEAMGFPAFVKKQ 79 (84)
T ss_dssp CHHHHHHHHHHTTCCEECSCC
T ss_pred CHHHHHHHHHHcCCceEecCC
Confidence 578999999999998876543
No 45
>2yib_D RNA-directed RNA polymerase; transferase, reverse transcriptase, IPNV; 3.80A {Infectious pancreatic necrosis virus}
Probab=23.11 E-value=38 Score=31.10 Aligned_cols=27 Identities=26% Similarity=0.177 Sum_probs=24.8
Q ss_pred hccCCCCCHHHHHHHHHHcCCCeeEec
Q 032659 34 SKACENPTCIEIADCCQYLKIPHAIEI 60 (136)
Q Consensus 34 ~~aV~~Pt~~EI~~A~~~Lgl~~~vE~ 60 (136)
+.+|++|...|+.+.+..+|+++.||.
T Consensus 493 ~~g~P~P~s~~~~~~~~ktGIn~KIE~ 519 (770)
T 2yib_D 493 KAGKPNPMTKEFMDLEEKTGINFKIER 519 (770)
T ss_dssp HTTCCCTTSHHHHTHHHHHSCCEEEEE
T ss_pred HcCCCCCChhHHHHHhhhcCcceEEEE
Confidence 567899999999999999999999885
No 46
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=22.91 E-value=77 Score=25.42 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCeeEeccccCCcCcCCCceEEEEeecCCCCccCCC
Q 032659 44 EIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFVNPA 89 (136)
Q Consensus 44 EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~l~~~dg~~~~~~ 89 (136)
++.+.|..+++++.+.+...+++. +++-++|=||+++..+
T Consensus 161 ~l~~l~~~~~vD~~v~~~~~~~~~------~k~viFD~DgTLi~~~ 200 (415)
T 3p96_A 161 ALNRVSSEEHVDVAVEDYTLERRA------KRLIVFDVDSTLVQGE 200 (415)
T ss_dssp HHHHHHHHHTCEEEEEECSTTTTC------CCEEEECTBTTTBSSC
T ss_pred HHHHHhhhcCcCcccccccccccC------CcEEEEcCcccCcCCc
Confidence 445557788999999987655543 4555678899998865
No 47
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=22.78 E-value=1.5e+02 Score=19.36 Aligned_cols=66 Identities=11% Similarity=0.096 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHcCCCeeEeccc-----cCCcCcCCCceEEEEeecCCCCccCCCCCCHHHHHHHHHHHhhc
Q 032659 40 PTCIEIADCCQYLKIPHAIEIDK-----AYPRDFMQRGRVRVMLKREDGTFVNPAISSRKQLMLHVAELVPR 106 (136)
Q Consensus 40 Pt~~EI~~A~~~Lgl~~~vE~~K-----~yPrdw~~~GRVrV~l~~~dg~~~~~~~~~K~~Ll~~Ia~~I~~ 106 (136)
...+++.+.+++.++++.+-.+. .--+.|...+-=.+-|.|.+|..+.... +-.+|...|.+.|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~-~~~~l~~~l~~ll~~ 149 (150)
T 3fw2_A 79 VDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKNL-RGEELKKKIENIVEE 149 (150)
T ss_dssp SCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEESC-CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEccC-CHHHHHHHHHHHHhc
Confidence 34578888888888876543322 0111122222222333456676555443 778888888877754
No 48
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=22.60 E-value=48 Score=23.58 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.3
Q ss_pred CCCCCHHHHHHHHHHcCCCe
Q 032659 37 CENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 37 V~~Pt~~EI~~A~~~Lgl~~ 56 (136)
+..=++.||.++|+.+||++
T Consensus 37 l~kLtVaELK~~cr~~GL~~ 56 (114)
T 2rnn_A 37 MELLKVSELKDICRSVSFPV 56 (114)
T ss_dssp HTTCCHHHHHHHHHHTTCCT
T ss_pred HHHhhHHHHHHHHHHcCCCc
Confidence 44568899999999999875
No 49
>1kxo_A DIGA16; lipocalin, anticalin, genetical engineering, digoxigenin, ligand binding protein; 1.80A {Pieris brassicae} SCOP: b.60.1.1 PDB: 1lke_A* 1lnm_A* 1n0s_A* 1t0v_A 1bbp_A*
Probab=22.54 E-value=22 Score=25.67 Aligned_cols=52 Identities=12% Similarity=0.030 Sum_probs=31.5
Q ss_pred cccccCeEEEeccc--ccCCcCcccccccchhccCCCCCHHHHHHHHH-HcCCCe
Q 032659 5 TARIKKWVILYPVY--INSKKTIAEGRRISASKACENPTCIEIADCCQ-YLKIPH 56 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y--~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~-~Lgl~~ 56 (136)
++|+.++.++|=|- +....+..-.--++++.-+..-.++++.++|+ .+||..
T Consensus 103 ~tDY~~Yaivy~C~~~~~~~~~~~~~wiLsR~~~~~~~~~~~~~~~~~~~~G~~~ 157 (184)
T 1kxo_A 103 STDNKNYIIGYFCSYDEDKKGHMDLVWVLSRSMVLTGEAKTAVENYLIGSPVVDS 157 (184)
T ss_dssp EECSSSEEEEEEEECC--CSEEEEEEEEEESSSSCCHHHHHHHHHHTTSCSSCCG
T ss_pred EeCCCCEEEEEEEeeeeccCCCccEEEEEEcCCCCCHHHHHHHHHHHHHhcCCCH
Confidence 46778888888774 33444444444445554444445577788888 888864
No 50
>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli}
Probab=22.43 E-value=53 Score=23.77 Aligned_cols=59 Identities=7% Similarity=0.007 Sum_probs=38.5
Q ss_pred ccccchhccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcCCCc-eEEEEeecCCCCccCCCCCCHHHHHHHHHHHhh
Q 032659 28 GRRISASKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRG-RVRVMLKREDGTFVNPAISSRKQLMLHVAELVP 105 (136)
Q Consensus 28 GRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~G-RVrV~l~~~dg~~~~~~~~~K~~Ll~~Ia~~I~ 105 (136)
-+.|+...+ .+.||++++..+||- + .+| .|+++ ...+.++....+..-+++..+++.|-
T Consensus 91 t~~i~l~~a----~a~~l~~~L~~~~ll-----~--------~r~~~v~~d--~~tn~l~Vsg~p~~v~~v~~~i~~LD 150 (156)
T 3gr5_A 91 RSIITPTYL----DIDSLLKYLSDTISV-----N--------KNSCNVRKI--TTFNSIEVRGVPECIKYITSLSESLD 150 (156)
T ss_dssp EEEECCSSS----CHHHHHHHHTTSSCC-----E--------ETTEEEEEC--SSTTCEEEEECHHHHHHHHHHHHHHH
T ss_pred EEEEEecCC----CHHHHHHHHHhcCCc-----c--------CCCCeEEEe--CCCCEEEEEcCHHHHHHHHHHHHHHh
Confidence 355555555 999999999887741 1 234 55554 23455555556778888888887764
No 51
>1exs_A Beta-lactoglobulin; lipocalin fold, lipid-binding protein; 2.39A {Sus scrofa} SCOP: b.60.1.1
Probab=22.40 E-value=21 Score=24.73 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=29.0
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCee
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPHA 57 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~ 57 (136)
++|+.+|.++|=+-.+...+..-.--++++.-+..-.++++.++++.+||+..
T Consensus 96 ~tdY~~yaiv~~~~~~~~~~~~~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~ 148 (160)
T 1exs_A 96 DTDYDSHLLLCMENSASPEHSLVCQSLARTLEVDDQIREKFEDALKTLSVPMR 148 (160)
T ss_dssp EETTTTEEEEEEECTTCHHHHCEEEEEESSSCCCHHHHHHHHHHHTTSSSCEE
T ss_pred EcCCCcEEEEEEEEcCCCceEEEEEEEecCCCCCHHHHHHHHHHHHhcCCCcc
Confidence 46888898888432211111111112233333333347788888999999765
No 52
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=22.39 E-value=50 Score=27.93 Aligned_cols=28 Identities=11% Similarity=-0.051 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHcCCCeeEeccccCCcCcCCC
Q 032659 41 TCIEIADCCQYLKIPHAIEIDKAYPRDFMQR 71 (136)
Q Consensus 41 t~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~ 71 (136)
-+.|+++||++-||.+-+-- +|-||+++
T Consensus 126 lv~el~~A~rk~Glk~GlY~---S~~dw~~p 153 (450)
T 2wvv_A 126 ILGELVKAYNDEGIDVHFYF---SVMDWSNP 153 (450)
T ss_dssp HHHHHHHHHHHTTCEEEEEE---ESCCTTCT
T ss_pred hHHHHHHHHHHcCCeEEEEe---cHHHhcCC
Confidence 57999999999999998652 23466543
No 53
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=22.22 E-value=92 Score=24.68 Aligned_cols=45 Identities=7% Similarity=0.138 Sum_probs=30.6
Q ss_pred eEEEecccccC-CcCcccc-cccchhccCCCCCHHHHHHHHHHcCCCeeEec
Q 032659 11 WVILYPVYINS-KKTIAEG-RRISASKACENPTCIEIADCCQYLKIPHAIEI 60 (136)
Q Consensus 11 ~~vIYP~Y~Ds-~~sr~eG-RRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~vE~ 60 (136)
..++|-.||+. .+|.-.+ |.+..+. -+.++.++|+++||++.-|.
T Consensus 47 ~~~v~k~~f~k~prts~~~~~g~~l~~-----gl~~l~~~~~~~Gl~~~te~ 93 (280)
T 2qkf_A 47 IPYIFKASFDKANRSSIHSYRGVGLEE-----GLKIFEKVKAEFGIPVITDV 93 (280)
T ss_dssp CCEEEEEESCCSSCSSSSSCCCSCHHH-----HHHHHHHHHHHHCCCEEEEC
T ss_pred eeEEEeeeeecCCCCChHHhhccchHH-----HHHHHHHHHHHcCCcEEEec
Confidence 55689999998 5553222 2211122 37789999999999999885
No 54
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=22.20 E-value=65 Score=18.66 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=17.6
Q ss_pred cCCCCCHHHHHHHHHHcCCCe
Q 032659 36 ACENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 36 aV~~Pt~~EI~~A~~~Lgl~~ 56 (136)
.-.+|++..+..+|..||+++
T Consensus 46 g~~~~~~~~l~~la~~l~v~~ 66 (71)
T 2ewt_A 46 GDRAVTVQRLAELADFYGVPV 66 (71)
T ss_dssp TCSCCCHHHHHHHHHHHTSCG
T ss_pred CCCCCCHHHHHHHHHHHCcCH
Confidence 345799999999999999875
No 55
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=22.14 E-value=32 Score=27.61 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHcCCCeeEec
Q 032659 38 ENPTCIEIADCCQYLKIPHAIEI 60 (136)
Q Consensus 38 ~~Pt~~EI~~A~~~Lgl~~~vE~ 60 (136)
....+.++.+.+..|||+++||-
T Consensus 138 ~~~~l~~l~~~A~~lGl~~LvEV 160 (258)
T 4a29_A 138 TERELESLLEYARSYGMEPLILI 160 (258)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CHHHHHHHHHHHHHHhHHHHHhc
Confidence 34468999999999999999994
No 56
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=22.11 E-value=57 Score=19.27 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHcCCCee
Q 032659 39 NPTCIEIADCCQYLKIPHA 57 (136)
Q Consensus 39 ~Pt~~EI~~A~~~Lgl~~~ 57 (136)
+|+...+..+|..||+++.
T Consensus 47 ~~~~~~l~~ia~~l~~~~~ 65 (78)
T 3b7h_A 47 RPTITTIRKVCGTLGISVH 65 (78)
T ss_dssp CCCHHHHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHcCCCHH
Confidence 7999999999999998763
No 57
>2pus_A IBDV VP1 RNA-dependant RNA polymerase; RNA polymerase motifs, transferase; 2.40A {Infectious bursal disease virus} PDB: 2qj1_A 2r70_A 2r72_A 2pgg_A
Probab=22.00 E-value=41 Score=31.21 Aligned_cols=27 Identities=22% Similarity=0.106 Sum_probs=24.8
Q ss_pred hccCCCCCHHHHHHHHHHcCCCeeEec
Q 032659 34 SKACENPTCIEIADCCQYLKIPHAIEI 60 (136)
Q Consensus 34 ~~aV~~Pt~~EI~~A~~~Lgl~~~vE~ 60 (136)
+.+|++|...|+.+.+..+|+++.||.
T Consensus 513 ~~g~P~P~s~~~~~~~a~tGIn~KIE~ 539 (852)
T 2pus_A 513 LMRQPRPDSEEFKSIEDKLGINFKIER 539 (852)
T ss_dssp HTTCCCTTSHHHHTHHHHHTCCEEEEE
T ss_pred HcCCCCCChhHHHHHhhhcCcceEEEE
Confidence 567899999999999999999999985
No 58
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=21.45 E-value=78 Score=18.41 Aligned_cols=21 Identities=14% Similarity=0.108 Sum_probs=18.0
Q ss_pred CCCCCHHHHHHHHHHcCCCee
Q 032659 37 CENPTCIEIADCCQYLKIPHA 57 (136)
Q Consensus 37 V~~Pt~~EI~~A~~~Lgl~~~ 57 (136)
...|+..++.+.+..|||+..
T Consensus 22 ~~yp~~~~r~~La~~l~l~~~ 42 (58)
T 1ig7_A 22 KQYLSIAERAEFSSSLSLTET 42 (58)
T ss_dssp CSCCCHHHHHHHHHHTTCCHH
T ss_pred CCCcCHHHHHHHHHHHCcCHH
Confidence 467999999999999999753
No 59
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=21.38 E-value=64 Score=18.39 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHcCCCeeE
Q 032659 39 NPTCIEIADCCQYLKIPHAI 58 (136)
Q Consensus 39 ~Pt~~EI~~A~~~Lgl~~~v 58 (136)
.-+..+|.+++..+|+++.+
T Consensus 49 ~~~~~~i~~~i~~~Gy~~~~ 68 (69)
T 4a4j_A 49 ETTPQILTDAVERAGYHARV 68 (69)
T ss_dssp TCCHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHcCCceEe
Confidence 45789999999999987653
No 60
>3huh_A Virulence protein STM3117; structural genomics, nysgrc, target 13955A1BCT15P1, dioxygen virulence, PSI-2, protein structure initiative; 1.50A {Salmonella enterica subsp} PDB: 3hnq_A
Probab=21.31 E-value=91 Score=20.53 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHcCCCeeEeccccCCcCcCCCceEEEEeecCCCCcc
Q 032659 41 TCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFV 86 (136)
Q Consensus 41 t~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~l~~~dg~~~ 86 (136)
.++++.+.|+..|+++..++.. +.|...+.-.+.+.|.||..+
T Consensus 96 dl~~~~~~l~~~G~~~~~~p~~---~~~~~g~~~~~~~~DPdG~~i 138 (152)
T 3huh_A 96 PINDVVSEILQAGISIVEGPVE---RTGATGEIMSIYIRDPDGNLI 138 (152)
T ss_dssp CHHHHHHHHHHTTCCCSEEEEE---EEETTEEEEEEEEECTTCCEE
T ss_pred CHHHHHHHHHHCCCeEecCCcc---ccCCCCcEEEEEEECCCCCEE
Confidence 7999999999999998765422 223222112334568888653
No 61
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=21.27 E-value=40 Score=23.01 Aligned_cols=52 Identities=10% Similarity=-0.043 Sum_probs=29.9
Q ss_pred cccccCeEEEecccccC-CcCcccccccchhccCCCCCHHHHHHHHHHcCCCee
Q 032659 5 TARIKKWVILYPVYINS-KKTIAEGRRISASKACENPTCIEIADCCQYLKIPHA 57 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds-~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~~ 57 (136)
++|++.+ ++|-.-.+. ..+..----++++.-+..-.+++..++|+.+||+..
T Consensus 86 ~tdy~~y-i~~~~~~~~~~~~~~~~~llsR~~~l~~e~~~~f~~~~~~~G~~~~ 138 (151)
T 1e5p_A 86 YITSDKI-FFTNKNMDRAGQETNMIVVAGKGNALTPEENEILVQFAHEKKIPVE 138 (151)
T ss_dssp EECSSEE-EEEEEEECTTSCEEEEEEEEESSSCCCHHHHHHHHHHHHHTTCCGG
T ss_pred EeCCCEE-EEEEEecCCCCcEEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCHH
Confidence 3566677 666332221 122222223344555555568889999999999864
No 62
>1z24_A Insecticyanin A form; blue biliprotein, INS-A, chromophore binding., lipid binding protein; HET: BLV; 2.60A {Manduca sexta} SCOP: b.60.1.1
Probab=21.21 E-value=56 Score=23.44 Aligned_cols=52 Identities=21% Similarity=0.171 Sum_probs=31.0
Q ss_pred cccccCeEEEecc-ccc-CCcCcccccccchhccCCCCCHHHHHHHHH--HcCCCe
Q 032659 5 TARIKKWVILYPV-YIN-SKKTIAEGRRISASKACENPTCIEIADCCQ--YLKIPH 56 (136)
Q Consensus 5 ~~~~~~~~vIYP~-Y~D-s~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~--~Lgl~~ 56 (136)
++|+.++.++|=| |-. ...++.-.=-++++.-+..-.++++.++|+ .+||+.
T Consensus 107 ~tDY~~Yaivy~C~~~~~~~~~~~~~~iLsR~~~~~~~~~~~~~~~~~~~~~G~d~ 162 (189)
T 1z24_A 107 ATDYKNYAINYNCDYHPDKKAHSIHAWILSKSKVLEGNTKEVVDNVLKTFSHLIDA 162 (189)
T ss_dssp EECSSSEEEEEEEEEETTTTEEEEEEEEEESSSSCCTHHHHHHHHHHHTTTTTCCG
T ss_pred EeCCCcEEEEEEEEeeccCCCCceEEEEEECCCCCCHHHHHHHHHHHhhhhcCCCH
Confidence 3567777777776 332 322233333344444444445788999999 999864
No 63
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=21.21 E-value=46 Score=22.65 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=19.3
Q ss_pred ccccchhccCCCCCHHH-HHHHHHHcCCCe
Q 032659 28 GRRISASKACENPTCIE-IADCCQYLKIPH 56 (136)
Q Consensus 28 GRRV~k~~aV~~Pt~~E-I~~A~~~Lgl~~ 56 (136)
|||....- -++=++.| |.+||+++||+.
T Consensus 19 ~rr~~VKv-tp~t~L~~VL~eaC~K~gl~~ 47 (90)
T 2al3_A 19 GRRHTVKV-TPSTVLLQVLEDTCRRQDFNP 47 (90)
T ss_dssp SCEEEECC-CTTSBHHHHHHHHHHHTTCCG
T ss_pred CcEEEEEE-CCCCCHHHHHHHHHHHhCCCh
Confidence 56644433 45557777 599999999963
No 64
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=21.01 E-value=76 Score=18.70 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHcCCCe
Q 032659 37 CENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 37 V~~Pt~~EI~~A~~~Lgl~~ 56 (136)
-..|++..+..+|..||+++
T Consensus 45 ~~~~~~~~l~~ia~~l~v~~ 64 (73)
T 3omt_A 45 DVQPSLETLFDIAEALNVDV 64 (73)
T ss_dssp SSCCCHHHHHHHHHHHTSCG
T ss_pred CCCCCHHHHHHHHHHHCcCH
Confidence 35799999999999999875
No 65
>1gm6_A SAL, salivary lipocalin; odorant-binding protein; HET: NAG; 2.13A {Sus scrofa} SCOP: b.60.1.1
Probab=20.93 E-value=39 Score=23.97 Aligned_cols=52 Identities=21% Similarity=0.174 Sum_probs=29.2
Q ss_pred cccccCeEEEecccccCCcCcccccccchhccCCCCCHHHHHHHHHHcCCCe
Q 032659 5 TARIKKWVILYPVYINSKKTIAEGRRISASKACENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 5 ~~~~~~~~vIYP~Y~Ds~~sr~eGRRV~k~~aV~~Pt~~EI~~A~~~Lgl~~ 56 (136)
++|+..+.+||=+-........-.--++++.-+..-.++++.+.|+.+||+.
T Consensus 97 ~tDY~~Yaiv~~~~~~~g~~~~~~~llsR~~~l~~e~~~~f~~~~~~~G~~~ 148 (175)
T 1gm6_A 97 EVNYSDYVILHLVDVNGDKTFQLMEFYGRKPDVEPKLKDKFVEICQQYGIIK 148 (175)
T ss_dssp EEETTTEEEEEEEEEETTEEEEEEEEEESSSCCCHHHHHHHHHHHHTTTCCG
T ss_pred EeCCCcEEEEEEEEcCCCeEEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCH
Confidence 4678887777644222111111112234444444445788899999999975
No 66
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=20.92 E-value=72 Score=18.76 Aligned_cols=20 Identities=0% Similarity=-0.066 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHHcCCCe
Q 032659 37 CENPTCIEIADCCQYLKIPH 56 (136)
Q Consensus 37 V~~Pt~~EI~~A~~~Lgl~~ 56 (136)
-..|+..|..+.+..+||+.
T Consensus 23 ~~yp~~~~r~~La~~~gl~~ 42 (60)
T 1k61_A 23 NPYLDTKGLENLMKNTSLSR 42 (60)
T ss_dssp SCCCCHHHHHHHHHHHCCCH
T ss_pred CCCcCHHHHHHHHHHHCcCH
Confidence 56899999999999999975
No 67
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=20.81 E-value=1.8e+02 Score=19.32 Aligned_cols=44 Identities=14% Similarity=0.051 Sum_probs=30.8
Q ss_pred hccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcCCCceEEEEeecCCCCcc
Q 032659 34 SKACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFV 86 (136)
Q Consensus 34 ~~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~l~~~dg~~~ 86 (136)
...|+ .+++..+.|+..|.++..++.. .| .||+. .+.|.||..+
T Consensus 103 ~f~Vd--Dvda~~~~l~~~Gv~~~~~p~~-~~-----~g~~~-~f~DPdGn~i 146 (155)
T 4g6x_A 103 SFAVD--DIAAEYERLSALGVRFTQEPTD-MG-----PVVTA-ILDDTCGNLI 146 (155)
T ss_dssp EEEES--CHHHHHHHHHHTTCCEEEEEEE-CS-----SCEEE-EEECSSSCEE
T ss_pred Eeeec--hhhhhhhHHhcCCcEEeeCCEE-cC-----CeEEE-EEECCCCCEE
Confidence 34454 6899999999999998877643 11 26654 4578899754
No 68
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=20.56 E-value=40 Score=25.82 Aligned_cols=23 Identities=22% Similarity=0.130 Sum_probs=19.7
Q ss_pred CCCCCHHHHHHHHHHcCCCeeEe
Q 032659 37 CENPTCIEIADCCQYLKIPHAIE 59 (136)
Q Consensus 37 V~~Pt~~EI~~A~~~Lgl~~~vE 59 (136)
-+.|+.++.+++|++||++|++.
T Consensus 33 SD~~v~~~a~~~L~~~gI~~e~~ 55 (181)
T 4b4k_A 33 SDWETMKYACDILDELNIPYEKK 55 (181)
T ss_dssp GGHHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHcCCCeeEE
Confidence 35688999999999999998754
No 69
>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}
Probab=20.53 E-value=1.5e+02 Score=18.20 Aligned_cols=46 Identities=15% Similarity=-0.021 Sum_probs=28.8
Q ss_pred ccCCCCCHHHHHHHHHHcCCCeeEeccccCCcCcCCCceEEEEeecCCCCcc
Q 032659 35 KACENPTCIEIADCCQYLKIPHAIEIDKAYPRDFMQRGRVRVMLKREDGTFV 86 (136)
Q Consensus 35 ~aV~~Pt~~EI~~A~~~Lgl~~~vE~~K~yPrdw~~~GRVrV~l~~~dg~~~ 86 (136)
.|..-+.++++.+.++..|+++..++ .+. ..|.-.+.+.|.||..+
T Consensus 77 ~~~~v~d~~~~~~~l~~~G~~~~~~~-----~~~-~~g~~~~~~~DPdG~~i 122 (126)
T 2p25_A 77 LAFKVEHIEEVIAFLNEQGIETEPLR-----VDD-FTGKKMTFFFDPDGLPL 122 (126)
T ss_dssp EEEECSCHHHHHHHHHHTTCCCCCCE-----ECT-TTCCEEEEEECTTCCEE
T ss_pred EEEEeCCHHHHHHHHHHcCCcccccc-----ccC-CCCcEEEEEECCCCCEE
Confidence 34444579999999999999875332 211 23433444568888644
No 70
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=20.24 E-value=72 Score=18.77 Aligned_cols=21 Identities=10% Similarity=-0.009 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHcCCCee
Q 032659 37 CENPTCIEIADCCQYLKIPHA 57 (136)
Q Consensus 37 V~~Pt~~EI~~A~~~Lgl~~~ 57 (136)
...|+..|..+.+..|||+..
T Consensus 27 ~~yp~~~~r~~La~~~~l~~~ 47 (61)
T 1akh_A 27 KQSLNSKEKEEVAKKCGITPL 47 (61)
T ss_dssp CSSCCHHHHHHHHHHHTSCHH
T ss_pred CCCcCHHHHHHHHHHHCcCHH
Confidence 368999999999999999753
No 71
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=20.08 E-value=91 Score=17.32 Aligned_cols=18 Identities=6% Similarity=0.193 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHcCCCeeE
Q 032659 41 TCIEIADCCQYLKIPHAI 58 (136)
Q Consensus 41 t~~EI~~A~~~Lgl~~~v 58 (136)
...+|.+++..+|+.+.+
T Consensus 53 ~~~~i~~~i~~~G~~~~~ 70 (72)
T 1osd_A 53 SVQKLTKATADAGYPSSV 70 (72)
T ss_dssp CHHHHHHHHHHTTCCCEE
T ss_pred CHHHHHHHHHhcCCCeEe
Confidence 678999999999998754
Done!