Query 032660
Match_columns 136
No_of_seqs 116 out of 143
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:19:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06005 DUF904: Protein of un 97.6 0.00092 2E-08 46.5 9.0 55 20-74 3-57 (72)
2 PRK15422 septal ring assembly 97.6 0.00081 1.8E-08 48.2 8.9 58 18-75 15-72 (79)
3 TIGR02894 DNA_bind_RsfA transc 97.3 0.0021 4.7E-08 51.2 8.8 60 16-75 82-144 (161)
4 COG3074 Uncharacterized protei 97.2 0.0045 9.9E-08 44.1 8.8 58 18-75 15-72 (79)
5 PF06005 DUF904: Protein of un 97.1 0.0095 2.1E-07 41.5 9.6 46 17-62 14-59 (72)
6 PF12325 TMF_TATA_bd: TATA ele 97.0 0.0075 1.6E-07 45.6 8.6 53 18-70 13-65 (120)
7 smart00353 HLH helix loop heli 96.8 0.0019 4.2E-08 40.2 3.5 25 7-31 28-52 (53)
8 PF07106 TBPIP: Tat binding pr 96.7 0.0065 1.4E-07 46.6 6.9 55 23-77 81-137 (169)
9 TIGR03752 conj_TIGR03752 integ 96.5 0.017 3.7E-07 52.5 9.1 52 20-71 65-131 (472)
10 PRK15422 septal ring assembly 96.4 0.03 6.4E-07 40.2 8.1 55 20-74 3-57 (79)
11 TIGR02449 conserved hypothetic 96.3 0.045 9.8E-07 37.8 8.0 55 22-76 8-62 (65)
12 cd00083 HLH Helix-loop-helix d 96.2 0.0057 1.2E-07 38.5 3.3 24 7-30 36-59 (60)
13 PF13870 DUF4201: Domain of un 96.2 0.074 1.6E-06 41.0 9.8 72 14-85 70-141 (177)
14 smart00338 BRLZ basic region l 96.2 0.025 5.5E-07 37.3 6.1 36 22-57 27-62 (65)
15 PF00170 bZIP_1: bZIP transcri 96.1 0.031 6.7E-07 36.8 6.4 38 35-72 26-63 (64)
16 COG4026 Uncharacterized protei 96.1 0.051 1.1E-06 46.4 9.2 58 18-75 132-189 (290)
17 PF04111 APG6: Autophagy prote 96.1 0.031 6.6E-07 47.6 7.9 45 24-68 46-90 (314)
18 PF06156 DUF972: Protein of un 96.1 0.05 1.1E-06 40.3 7.9 52 25-76 5-56 (107)
19 COG3883 Uncharacterized protei 96.0 0.065 1.4E-06 45.6 9.3 63 12-74 36-98 (265)
20 PF00010 HLH: Helix-loop-helix 96.0 0.011 2.3E-07 37.5 3.5 22 6-27 34-55 (55)
21 PF02183 HALZ: Homeobox associ 95.9 0.027 5.8E-07 36.1 5.2 38 25-62 2-39 (45)
22 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.9 0.091 2E-06 39.2 8.9 59 17-75 55-117 (132)
23 PRK10884 SH3 domain-containing 95.9 0.064 1.4E-06 43.6 8.7 54 21-74 93-157 (206)
24 PF04880 NUDE_C: NUDE protein, 95.8 0.016 3.4E-07 46.2 4.6 46 23-72 2-47 (166)
25 KOG2264 Exostosin EXT1L [Signa 95.6 0.093 2E-06 49.9 9.6 96 22-117 94-201 (907)
26 PF10224 DUF2205: Predicted co 95.6 0.2 4.4E-06 35.7 9.2 47 22-68 17-63 (80)
27 PF12329 TMF_DNA_bd: TATA elem 95.5 0.15 3.3E-06 35.3 8.2 60 16-75 7-66 (74)
28 PF00170 bZIP_1: bZIP transcri 95.5 0.11 2.3E-06 34.2 7.0 36 22-57 27-62 (64)
29 PF08317 Spc7: Spc7 kinetochor 95.4 0.099 2.2E-06 44.3 8.3 50 23-72 211-260 (325)
30 PF02403 Seryl_tRNA_N: Seryl-t 95.4 0.14 3.1E-06 36.3 7.8 52 23-74 38-92 (108)
31 PF10473 CENP-F_leu_zip: Leuci 95.3 0.12 2.6E-06 40.1 7.7 50 26-75 43-92 (140)
32 TIGR02894 DNA_bind_RsfA transc 95.2 0.11 2.3E-06 41.6 7.4 55 19-73 95-149 (161)
33 PF12325 TMF_TATA_bd: TATA ele 95.2 0.16 3.4E-06 38.4 7.9 60 15-74 17-79 (120)
34 PF02183 HALZ: Homeobox associ 95.2 0.087 1.9E-06 33.7 5.6 39 33-71 3-41 (45)
35 COG4026 Uncharacterized protei 95.2 0.099 2.2E-06 44.7 7.5 46 30-75 130-175 (290)
36 COG3074 Uncharacterized protei 95.1 0.23 4.9E-06 35.6 8.1 54 20-73 3-56 (79)
37 PF07106 TBPIP: Tat binding pr 95.1 0.1 2.2E-06 40.0 6.8 54 23-76 74-129 (169)
38 PRK13169 DNA replication intia 95.0 0.19 4E-06 37.7 7.9 51 25-75 5-55 (110)
39 KOG4005 Transcription factor X 95.0 0.21 4.5E-06 42.9 9.0 61 14-74 90-150 (292)
40 COG3883 Uncharacterized protei 95.0 0.14 3E-06 43.7 7.9 66 12-77 25-94 (265)
41 PRK11637 AmiB activator; Provi 94.9 0.26 5.6E-06 42.8 9.6 59 16-74 70-128 (428)
42 PRK11637 AmiB activator; Provi 94.8 0.28 6E-06 42.6 9.4 37 38-74 85-121 (428)
43 PF04977 DivIC: Septum formati 94.7 0.2 4.3E-06 33.0 6.6 47 27-73 16-62 (80)
44 PF10146 zf-C4H2: Zinc finger- 94.6 0.26 5.7E-06 40.8 8.5 50 20-69 31-80 (230)
45 PF08614 ATG16: Autophagy prot 94.6 0.38 8.3E-06 37.8 9.1 56 19-74 114-169 (194)
46 PF14197 Cep57_CLD_2: Centroso 94.6 0.38 8.3E-06 33.1 8.0 52 23-74 7-65 (69)
47 PF04977 DivIC: Septum formati 94.6 0.2 4.2E-06 33.1 6.3 36 20-55 16-51 (80)
48 KOG2391 Vacuolar sorting prote 94.6 0.33 7.1E-06 43.2 9.4 45 32-76 222-266 (365)
49 PF07888 CALCOCO1: Calcium bin 94.6 0.12 2.6E-06 47.9 6.9 38 39-76 421-458 (546)
50 PF04325 DUF465: Protein of un 94.5 0.15 3.3E-06 32.4 5.5 48 24-71 2-49 (49)
51 PRK09039 hypothetical protein; 94.5 0.32 6.9E-06 41.9 9.1 56 14-69 130-185 (343)
52 PTZ00454 26S protease regulato 94.5 0.18 3.9E-06 44.2 7.6 60 13-79 7-66 (398)
53 PRK13922 rod shape-determining 94.4 0.25 5.5E-06 40.3 8.0 40 30-73 71-110 (276)
54 PRK10884 SH3 domain-containing 94.4 0.48 1E-05 38.6 9.5 32 40-71 130-161 (206)
55 PF11932 DUF3450: Protein of u 94.4 0.29 6.2E-06 39.7 8.2 42 33-74 54-95 (251)
56 PF08317 Spc7: Spc7 kinetochor 94.4 0.4 8.7E-06 40.6 9.3 54 19-72 214-267 (325)
57 PF14662 CCDC155: Coiled-coil 94.4 0.4 8.6E-06 39.4 8.9 52 20-71 59-110 (193)
58 COG5570 Uncharacterized small 94.4 0.16 3.5E-06 34.4 5.5 46 27-72 4-56 (57)
59 TIGR03752 conj_TIGR03752 integ 94.3 0.22 4.8E-06 45.5 7.9 54 23-76 75-143 (472)
60 PF03962 Mnd1: Mnd1 family; I 94.2 0.38 8.3E-06 38.3 8.4 55 21-75 69-129 (188)
61 PF05667 DUF812: Protein of un 94.2 0.36 7.8E-06 44.9 9.4 66 9-74 313-381 (594)
62 PTZ00454 26S protease regulato 94.2 0.15 3.3E-06 44.6 6.5 42 21-62 22-63 (398)
63 PF15294 Leu_zip: Leucine zipp 94.1 0.19 4.2E-06 43.0 6.9 46 25-70 129-174 (278)
64 PF04156 IncA: IncA protein; 94.0 0.62 1.3E-05 35.8 8.9 59 16-74 83-141 (191)
65 PRK13169 DNA replication intia 94.0 0.56 1.2E-05 35.1 8.4 49 22-70 9-57 (110)
66 PF07989 Microtub_assoc: Micro 93.9 0.52 1.1E-05 32.9 7.6 52 23-74 2-61 (75)
67 PRK13729 conjugal transfer pil 93.9 0.4 8.8E-06 43.9 8.9 59 18-76 66-124 (475)
68 PF14662 CCDC155: Coiled-coil 93.9 0.48 1E-05 38.9 8.4 57 21-77 74-130 (193)
69 smart00338 BRLZ basic region l 93.7 0.4 8.8E-06 31.5 6.5 38 35-72 26-63 (65)
70 COG1579 Zn-ribbon protein, pos 93.7 0.45 9.7E-06 39.9 8.2 54 21-74 89-142 (239)
71 PF07798 DUF1640: Protein of u 93.7 0.51 1.1E-05 36.8 8.0 49 26-74 49-98 (177)
72 PF06156 DUF972: Protein of un 93.6 0.64 1.4E-05 34.5 8.1 57 10-70 1-57 (107)
73 TIGR02209 ftsL_broad cell divi 93.6 0.96 2.1E-05 30.6 8.4 48 25-73 21-68 (85)
74 PRK00888 ftsB cell division pr 93.6 0.27 5.9E-06 36.0 6.0 45 23-74 29-73 (105)
75 PF08172 CASP_C: CASP C termin 93.6 0.48 1E-05 39.6 8.2 61 17-77 75-135 (248)
76 PF15070 GOLGA2L5: Putative go 93.4 0.49 1.1E-05 44.2 8.8 55 21-75 4-62 (617)
77 KOG1319 bHLHZip transcription 93.4 0.28 6E-06 40.9 6.3 48 8-55 99-146 (229)
78 PF09789 DUF2353: Uncharacteri 93.3 0.44 9.5E-06 41.5 7.8 51 25-75 130-180 (319)
79 PF00038 Filament: Intermediat 93.3 1.1 2.3E-05 36.7 9.7 54 19-72 221-278 (312)
80 PHA02562 46 endonuclease subun 93.3 0.7 1.5E-05 40.4 9.1 55 16-70 353-407 (562)
81 PF10234 Cluap1: Clusterin-ass 93.2 0.43 9.4E-06 40.6 7.5 60 24-83 165-225 (267)
82 TIGR00219 mreC rod shape-deter 93.2 0.39 8.5E-06 40.3 7.2 32 32-63 70-105 (283)
83 PF06632 XRCC4: DNA double-str 93.2 0.81 1.8E-05 40.0 9.3 45 15-59 131-175 (342)
84 PF11932 DUF3450: Protein of u 93.2 1.2 2.5E-05 36.2 9.6 44 26-69 54-97 (251)
85 PRK05771 V-type ATP synthase s 93.2 0.36 7.8E-06 44.2 7.3 62 13-74 52-125 (646)
86 TIGR02209 ftsL_broad cell divi 93.1 0.87 1.9E-05 30.8 7.5 36 21-56 24-59 (85)
87 PF05529 Bap31: B-cell recepto 93.0 0.79 1.7E-05 35.7 8.2 31 40-70 159-189 (192)
88 smart00787 Spc7 Spc7 kinetocho 93.0 0.68 1.5E-05 39.7 8.4 52 23-74 206-257 (312)
89 PF14282 FlxA: FlxA-like prote 93.0 0.38 8.1E-06 35.1 5.9 53 20-72 18-74 (106)
90 PRK13922 rod shape-determining 92.9 0.41 8.9E-06 39.0 6.7 42 18-63 66-107 (276)
91 PF13851 GAS: Growth-arrest sp 92.9 1.2 2.6E-05 35.8 9.2 60 15-74 21-80 (201)
92 PF07798 DUF1640: Protein of u 92.7 1.1 2.4E-05 34.9 8.5 27 47-73 111-137 (177)
93 TIGR02449 conserved hypothetic 92.7 1.4 3.1E-05 30.4 8.1 53 23-75 2-54 (65)
94 PF10186 Atg14: UV radiation r 92.6 1.5 3.2E-05 34.9 9.3 52 19-70 54-105 (302)
95 PF11559 ADIP: Afadin- and alp 92.6 1.8 3.8E-05 32.5 9.3 54 19-72 36-89 (151)
96 PRK13729 conjugal transfer pil 92.5 0.84 1.8E-05 41.9 8.7 60 14-73 69-128 (475)
97 PF13815 Dzip-like_N: Iguana/D 92.5 0.95 2.1E-05 33.3 7.6 41 32-72 77-117 (118)
98 PRK05431 seryl-tRNA synthetase 92.5 0.71 1.5E-05 40.8 8.1 53 22-74 36-91 (425)
99 PHA03011 hypothetical protein; 92.4 1.4 3.1E-05 33.6 8.5 59 16-74 59-117 (120)
100 PF11559 ADIP: Afadin- and alp 92.3 1.7 3.7E-05 32.5 8.9 47 23-69 61-107 (151)
101 PF04728 LPP: Lipoprotein leuc 92.3 1.6 3.4E-05 29.6 7.7 46 23-68 5-50 (56)
102 PF00038 Filament: Intermediat 92.2 1.1 2.5E-05 36.6 8.4 35 38-72 212-246 (312)
103 PRK03992 proteasome-activating 92.2 0.59 1.3E-05 40.3 7.0 49 24-79 4-52 (389)
104 PF02403 Seryl_tRNA_N: Seryl-t 92.2 1 2.3E-05 31.8 7.2 58 18-75 40-100 (108)
105 PF07200 Mod_r: Modifier of ru 92.2 1.7 3.6E-05 32.4 8.6 60 18-77 31-90 (150)
106 smart00787 Spc7 Spc7 kinetocho 92.2 1.2 2.5E-05 38.4 8.7 49 22-70 212-260 (312)
107 PF15070 GOLGA2L5: Putative go 92.2 0.79 1.7E-05 42.9 8.2 56 21-76 15-70 (617)
108 TIGR00219 mreC rod shape-deter 92.1 1.3 2.7E-05 37.3 8.7 22 38-59 69-90 (283)
109 PF07200 Mod_r: Modifier of ru 92.0 1.1 2.4E-05 33.4 7.5 53 23-75 29-81 (150)
110 TIGR01554 major_cap_HK97 phage 91.9 0.82 1.8E-05 38.8 7.5 19 24-42 2-20 (378)
111 PF07716 bZIP_2: Basic region 91.9 0.57 1.2E-05 30.0 5.1 30 41-70 24-53 (54)
112 KOG4360 Uncharacterized coiled 91.8 1.1 2.4E-05 41.9 8.7 49 10-58 211-263 (596)
113 PF10186 Atg14: UV radiation r 91.8 2 4.4E-05 34.2 9.2 15 26-40 75-89 (302)
114 PF08826 DMPK_coil: DMPK coile 91.8 2.4 5.1E-05 28.9 8.2 51 19-69 9-59 (61)
115 PF04111 APG6: Autophagy prote 91.8 1.8 4E-05 36.9 9.5 15 60-74 117-131 (314)
116 PRK09039 hypothetical protein; 91.7 1.6 3.4E-05 37.7 9.1 54 21-74 130-183 (343)
117 PF01920 Prefoldin_2: Prefoldi 91.7 0.19 4.1E-06 34.7 2.9 49 10-58 51-99 (106)
118 PF07888 CALCOCO1: Calcium bin 91.7 1.4 3E-05 41.1 9.2 8 31-38 160-167 (546)
119 KOG1318 Helix loop helix trans 91.6 0.66 1.4E-05 41.8 6.8 51 9-59 268-321 (411)
120 PRK11415 hypothetical protein; 91.6 1.1 2.5E-05 30.9 6.7 54 17-70 6-67 (74)
121 cd00632 Prefoldin_beta Prefold 91.5 1.1 2.4E-05 32.0 6.8 49 9-57 51-99 (105)
122 PRK03992 proteasome-activating 91.5 0.86 1.9E-05 39.3 7.3 44 20-63 7-50 (389)
123 PRK00888 ftsB cell division pr 91.4 0.96 2.1E-05 33.1 6.5 34 37-70 29-62 (105)
124 TIGR02231 conserved hypothetic 91.4 1.6 3.4E-05 38.9 9.0 66 11-76 92-172 (525)
125 PF10211 Ax_dynein_light: Axon 91.3 1.5 3.2E-05 35.0 8.0 25 24-48 123-147 (189)
126 KOG4797 Transcriptional regula 91.2 0.78 1.7E-05 35.2 6.0 33 34-66 66-98 (123)
127 PF00769 ERM: Ezrin/radixin/mo 91.2 1.2 2.6E-05 36.8 7.6 58 17-74 57-114 (246)
128 PF05837 CENP-H: Centromere pr 91.1 2.4 5.1E-05 30.9 8.3 57 17-74 13-69 (106)
129 TIGR00414 serS seryl-tRNA synt 91.1 1.6 3.4E-05 38.6 8.6 52 23-74 39-94 (418)
130 PF14282 FlxA: FlxA-like prote 90.9 1.6 3.4E-05 31.9 7.2 49 27-75 18-70 (106)
131 PF10473 CENP-F_leu_zip: Leuci 90.9 1.5 3.2E-05 34.1 7.4 47 27-73 51-97 (140)
132 COG1340 Uncharacterized archae 90.9 1.1 2.4E-05 38.9 7.3 54 20-73 47-100 (294)
133 KOG1962 B-cell receptor-associ 90.9 1 2.2E-05 37.5 6.8 37 36-72 173-209 (216)
134 PRK00409 recombination and DNA 90.8 1.8 3.9E-05 41.2 9.2 48 21-68 520-567 (782)
135 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.7 2.2 4.7E-05 31.8 8.0 49 23-71 68-120 (132)
136 COG4942 Membrane-bound metallo 90.7 1.8 3.9E-05 39.2 8.7 51 22-72 60-110 (420)
137 COG2433 Uncharacterized conser 90.7 1.2 2.6E-05 42.3 7.8 44 16-59 417-460 (652)
138 PF10805 DUF2730: Protein of u 90.6 1.6 3.5E-05 31.8 7.0 27 43-69 66-92 (106)
139 PF01166 TSC22: TSC-22/dip/bun 90.6 0.43 9.3E-06 32.7 3.6 28 36-63 15-42 (59)
140 PF12718 Tropomyosin_1: Tropom 90.5 2 4.3E-05 32.9 7.8 27 48-74 34-60 (143)
141 PF14988 DUF4515: Domain of un 90.5 2.4 5.3E-05 34.4 8.6 50 23-72 151-200 (206)
142 PF09304 Cortex-I_coil: Cortex 90.5 2.6 5.5E-05 31.9 8.1 31 26-56 42-72 (107)
143 PF07334 IFP_35_N: Interferon- 90.4 0.37 8.1E-06 34.3 3.4 24 52-75 3-26 (76)
144 PF04156 IncA: IncA protein; 90.4 3.9 8.6E-05 31.3 9.4 27 22-48 124-150 (191)
145 COG2433 Uncharacterized conser 90.4 1.3 2.8E-05 42.0 7.8 60 14-73 422-491 (652)
146 KOG0977 Nuclear envelope prote 90.4 1.4 3.1E-05 41.0 8.0 35 41-75 154-188 (546)
147 PF05008 V-SNARE: Vesicle tran 90.4 1.8 3.8E-05 29.0 6.6 56 18-73 22-78 (79)
148 PF06632 XRCC4: DNA double-str 90.3 1.9 4.2E-05 37.7 8.4 50 22-71 131-180 (342)
149 PF03961 DUF342: Protein of un 90.1 2.3 4.9E-05 37.4 8.8 55 20-74 333-407 (451)
150 PF14645 Chibby: Chibby family 90.0 1.4 2.9E-05 33.1 6.3 47 26-72 69-115 (116)
151 KOG0250 DNA repair protein RAD 90.0 2 4.2E-05 43.0 8.9 54 23-76 403-456 (1074)
152 PF10498 IFT57: Intra-flagella 89.9 2.6 5.6E-05 37.0 8.9 66 19-84 271-356 (359)
153 PLN02678 seryl-tRNA synthetase 89.9 3.8 8.3E-05 37.0 10.2 52 23-74 42-96 (448)
154 PF13851 GAS: Growth-arrest sp 89.9 4.3 9.4E-05 32.6 9.5 43 15-57 87-129 (201)
155 PF09789 DUF2353: Uncharacteri 89.6 2.7 5.8E-05 36.8 8.6 43 13-55 71-113 (319)
156 PF05103 DivIVA: DivIVA protei 89.5 0.2 4.3E-06 36.1 1.5 47 19-65 23-69 (131)
157 PF12709 Kinetocho_Slk19: Cent 89.4 1.1 2.3E-05 32.7 5.1 43 29-71 35-78 (87)
158 PF05701 WEMBL: Weak chloropla 89.4 2.8 6.1E-05 38.0 9.0 58 17-74 291-348 (522)
159 PF14197 Cep57_CLD_2: Centroso 89.4 4.2 9.1E-05 28.0 7.9 42 28-69 26-67 (69)
160 PF04999 FtsL: Cell division p 89.3 3 6.6E-05 29.1 7.3 38 26-63 33-70 (97)
161 PRK04325 hypothetical protein; 89.3 5.5 0.00012 27.5 9.2 53 24-76 5-57 (74)
162 COG3937 Uncharacterized conser 89.3 2.6 5.7E-05 31.9 7.4 56 18-73 43-107 (108)
163 PF03961 DUF342: Protein of un 89.3 3.3 7.2E-05 36.4 9.1 33 24-56 330-362 (451)
164 PF12709 Kinetocho_Slk19: Cent 89.2 2.8 6.1E-05 30.5 7.2 32 28-59 49-80 (87)
165 PF07716 bZIP_2: Basic region 89.1 1.7 3.7E-05 27.8 5.5 30 34-63 24-53 (54)
166 PF10458 Val_tRNA-synt_C: Valy 89.1 4 8.6E-05 27.2 7.5 22 54-75 44-65 (66)
167 TIGR01069 mutS2 MutS2 family p 89.1 2.9 6.4E-05 39.8 9.2 10 15-24 498-507 (771)
168 PF03962 Mnd1: Mnd1 family; I 89.1 3.6 7.9E-05 32.8 8.5 47 20-66 75-127 (188)
169 COG2919 Septum formation initi 89.0 2.5 5.5E-05 31.2 7.1 38 20-57 49-86 (117)
170 PF05266 DUF724: Protein of un 89.0 2.7 5.9E-05 33.8 7.7 19 38-56 127-145 (190)
171 COG5481 Uncharacterized conser 88.9 3.3 7.2E-05 28.8 7.0 47 26-72 9-61 (67)
172 PRK02119 hypothetical protein; 88.8 6 0.00013 27.3 8.7 53 24-76 5-57 (73)
173 PF06810 Phage_GP20: Phage min 88.8 2.8 6E-05 32.6 7.4 10 60-69 55-64 (155)
174 TIGR00606 rad50 rad50. This fa 88.6 2.9 6.3E-05 41.5 9.1 60 16-75 1017-1087(1311)
175 PRK14153 heat shock protein Gr 88.5 1.6 3.4E-05 35.6 6.1 46 28-73 24-71 (194)
176 PF05377 FlaC_arch: Flagella a 88.5 2 4.2E-05 29.0 5.6 35 40-74 5-39 (55)
177 PF00769 ERM: Ezrin/radixin/mo 88.4 2.9 6.4E-05 34.5 7.8 33 23-55 35-67 (246)
178 PF08961 DUF1875: Domain of un 88.2 0.15 3.2E-06 43.1 0.0 11 102-112 210-220 (243)
179 KOG2751 Beclin-like protein [S 88.2 2.2 4.8E-05 39.0 7.4 47 23-69 178-224 (447)
180 PF12329 TMF_DNA_bd: TATA elem 88.2 6.7 0.00014 27.1 9.2 53 22-74 20-72 (74)
181 TIGR01242 26Sp45 26S proteasom 88.2 1.2 2.7E-05 37.5 5.5 40 33-79 4-43 (364)
182 PRK10803 tol-pal system protei 88.1 3.2 6.9E-05 34.5 7.8 53 20-72 53-105 (263)
183 TIGR01069 mutS2 MutS2 family p 88.1 3.9 8.5E-05 39.0 9.3 48 20-67 514-561 (771)
184 PRK03918 chromosome segregatio 88.1 4.2 9.1E-05 37.7 9.3 30 45-74 669-698 (880)
185 PF10482 CtIP_N: Tumour-suppre 88.0 2.4 5.3E-05 32.6 6.5 33 33-65 87-119 (120)
186 PF04102 SlyX: SlyX; InterPro 88.0 3.5 7.7E-05 27.9 6.7 51 26-76 2-52 (69)
187 PF10226 DUF2216: Uncharacteri 88.0 2.7 5.8E-05 34.7 7.2 47 11-57 31-84 (195)
188 KOG2391 Vacuolar sorting prote 88.0 4.2 9.1E-05 36.3 8.8 48 25-72 222-269 (365)
189 PF12808 Mto2_bdg: Micro-tubul 87.9 1.9 4.1E-05 28.7 5.2 45 25-69 5-49 (52)
190 PF13747 DUF4164: Domain of un 87.9 3.5 7.6E-05 29.5 7.0 50 21-74 8-57 (89)
191 PF12777 MT: Microtubule-bindi 87.8 5.6 0.00012 33.9 9.3 51 17-67 231-281 (344)
192 KOG3650 Predicted coiled-coil 87.8 2.1 4.6E-05 32.6 6.0 42 27-68 62-103 (120)
193 smart00340 HALZ homeobox assoc 87.8 2.2 4.7E-05 27.7 5.2 40 41-84 4-44 (44)
194 PF04102 SlyX: SlyX; InterPro 87.8 4.7 0.0001 27.3 7.2 45 33-77 2-46 (69)
195 PF10146 zf-C4H2: Zinc finger- 87.7 6.7 0.00015 32.5 9.5 14 16-29 34-47 (230)
196 PLN02320 seryl-tRNA synthetase 87.6 5.6 0.00012 36.7 9.7 53 23-75 102-163 (502)
197 PRK14160 heat shock protein Gr 87.6 2.9 6.3E-05 34.5 7.2 42 30-71 56-97 (211)
198 PF12777 MT: Microtubule-bindi 87.5 4.3 9.4E-05 34.6 8.5 54 21-74 228-281 (344)
199 COG1579 Zn-ribbon protein, pos 87.4 4.1 9E-05 34.2 8.1 53 20-72 30-82 (239)
200 PRK14127 cell division protein 87.4 4.1 8.8E-05 30.5 7.3 32 44-75 39-70 (109)
201 PF12718 Tropomyosin_1: Tropom 87.4 4.2 9.1E-05 31.1 7.6 36 24-59 17-52 (143)
202 TIGR00606 rad50 rad50. This fa 87.4 3.6 7.8E-05 40.9 8.9 55 16-70 876-930 (1311)
203 PRK05431 seryl-tRNA synthetase 87.4 4 8.7E-05 36.1 8.5 57 19-75 40-99 (425)
204 KOG4196 bZIP transcription fac 87.3 3.5 7.7E-05 32.3 7.1 48 27-74 46-106 (135)
205 PF04999 FtsL: Cell division p 87.3 3.6 7.8E-05 28.7 6.7 33 37-69 37-69 (97)
206 TIGR01242 26Sp45 26S proteasom 87.3 1.7 3.8E-05 36.6 5.9 40 25-64 3-42 (364)
207 PRK04406 hypothetical protein; 87.2 8 0.00017 26.9 9.5 52 25-76 8-59 (75)
208 COG4467 Regulator of replicati 87.2 4.4 9.5E-05 31.0 7.4 48 26-73 6-53 (114)
209 COG1340 Uncharacterized archae 87.2 5.6 0.00012 34.6 9.0 58 12-72 14-71 (294)
210 PF05529 Bap31: B-cell recepto 87.2 5.7 0.00012 30.9 8.3 28 47-74 159-186 (192)
211 PF05266 DUF724: Protein of un 87.2 6.1 0.00013 31.8 8.7 47 28-74 131-177 (190)
212 PF10211 Ax_dynein_light: Axon 87.1 6.1 0.00013 31.5 8.6 27 40-66 125-151 (189)
213 TIGR03185 DNA_S_dndD DNA sulfu 87.1 5.5 0.00012 36.6 9.4 20 56-75 269-288 (650)
214 PF04728 LPP: Lipoprotein leuc 87.1 6.9 0.00015 26.4 7.5 48 27-74 2-49 (56)
215 KOG0946 ER-Golgi vesicle-tethe 87.0 4.3 9.2E-05 40.1 8.9 62 15-76 658-719 (970)
216 PF10234 Cluap1: Clusterin-ass 87.0 7.3 0.00016 33.3 9.5 61 15-75 170-237 (267)
217 PRK15396 murein lipoprotein; P 86.9 5.5 0.00012 28.3 7.4 43 23-72 27-69 (78)
218 KOG1962 B-cell receptor-associ 86.7 2.2 4.7E-05 35.5 6.0 35 40-74 149-183 (216)
219 PF13600 DUF4140: N-terminal d 86.7 1.7 3.7E-05 30.6 4.7 31 36-66 71-101 (104)
220 PF13815 Dzip-like_N: Iguana/D 86.6 3.2 7E-05 30.5 6.4 39 26-64 78-116 (118)
221 PF06103 DUF948: Bacterial pro 86.5 8.4 0.00018 26.5 9.2 49 19-67 17-65 (90)
222 PRK02119 hypothetical protein; 86.5 4.4 9.4E-05 28.0 6.6 47 29-75 3-49 (73)
223 KOG0977 Nuclear envelope prote 86.4 2.9 6.3E-05 39.0 7.3 38 32-69 152-189 (546)
224 PF07889 DUF1664: Protein of u 86.3 5.5 0.00012 30.5 7.7 59 17-75 56-115 (126)
225 COG4942 Membrane-bound metallo 86.2 6.5 0.00014 35.7 9.2 18 58-75 89-106 (420)
226 KOG0995 Centromere-associated 86.2 4 8.6E-05 38.5 8.1 52 22-73 295-363 (581)
227 cd00632 Prefoldin_beta Prefold 86.2 3.5 7.6E-05 29.4 6.2 45 24-68 59-103 (105)
228 PF01166 TSC22: TSC-22/dip/bun 86.2 1.1 2.3E-05 30.8 3.3 29 27-55 13-41 (59)
229 PF04012 PspA_IM30: PspA/IM30 86.1 9.1 0.0002 30.1 9.1 51 18-68 88-138 (221)
230 PF08172 CASP_C: CASP C termin 86.0 2.2 4.8E-05 35.7 5.8 59 11-69 76-134 (248)
231 PF07407 Seadorna_VP6: Seadorn 85.8 1.5 3.3E-05 39.3 5.0 26 23-48 34-59 (420)
232 PF06103 DUF948: Bacterial pro 85.8 9.3 0.0002 26.3 9.5 56 16-71 21-76 (90)
233 PF10805 DUF2730: Protein of u 85.8 10 0.00022 27.6 8.5 45 31-75 45-91 (106)
234 PF04420 CHD5: CHD5-like prote 85.7 1.3 2.8E-05 34.4 4.0 22 19-40 38-59 (161)
235 KOG0804 Cytoplasmic Zn-finger 85.6 5.6 0.00012 36.8 8.6 34 26-59 373-406 (493)
236 PRK00846 hypothetical protein; 85.5 11 0.00023 26.8 9.1 52 25-76 10-61 (77)
237 PF08647 BRE1: BRE1 E3 ubiquit 85.5 4.9 0.00011 28.7 6.6 55 21-75 10-64 (96)
238 COG1792 MreC Cell shape-determ 85.5 3.4 7.5E-05 34.8 6.8 12 51-62 92-103 (284)
239 PRK00295 hypothetical protein; 85.4 9.3 0.0002 26.0 8.9 50 27-76 4-53 (68)
240 PF10883 DUF2681: Protein of u 85.4 6.8 0.00015 28.4 7.4 31 21-51 16-46 (87)
241 KOG0982 Centrosomal protein Nu 85.4 5.3 0.00011 36.9 8.3 38 36-73 298-335 (502)
242 PRK02224 chromosome segregatio 85.4 6.8 0.00015 36.6 9.2 47 28-74 251-297 (880)
243 PF01763 Herpes_UL6: Herpesvir 85.2 3.4 7.4E-05 38.6 7.1 35 23-57 372-406 (557)
244 COG2919 Septum formation initi 85.2 7.6 0.00016 28.7 7.7 40 32-71 47-86 (117)
245 KOG4571 Activating transcripti 85.1 3.2 7E-05 36.1 6.5 50 18-74 238-287 (294)
246 PRK02793 phi X174 lysis protei 85.1 10 0.00022 26.1 9.2 51 26-76 6-56 (72)
247 PF09744 Jnk-SapK_ap_N: JNK_SA 85.1 2.8 6.1E-05 33.0 5.7 29 46-74 86-114 (158)
248 COG3879 Uncharacterized protei 85.0 3.8 8.3E-05 34.8 6.8 31 25-55 54-84 (247)
249 KOG0250 DNA repair protein RAD 84.9 4 8.7E-05 40.9 7.8 54 22-75 409-462 (1074)
250 PRK14148 heat shock protein Gr 84.9 4.2 9.2E-05 33.1 6.8 40 34-73 39-78 (195)
251 TIGR01834 PHA_synth_III_E poly 84.8 7.1 0.00015 34.2 8.5 59 13-71 255-318 (320)
252 PRK03947 prefoldin subunit alp 84.7 5.3 0.00012 29.5 6.8 42 21-62 6-47 (140)
253 PF06698 DUF1192: Protein of u 84.6 1.6 3.4E-05 29.7 3.5 23 52-74 24-46 (59)
254 PRK04325 hypothetical protein; 84.5 6.4 0.00014 27.2 6.7 45 31-75 5-49 (74)
255 PF04871 Uso1_p115_C: Uso1 / p 84.5 13 0.00029 28.2 9.0 16 26-41 32-47 (136)
256 PF09766 FimP: Fms-interacting 84.4 5.8 0.00013 34.4 7.9 52 20-75 90-141 (355)
257 PRK02224 chromosome segregatio 84.3 7.7 0.00017 36.2 9.1 21 17-37 533-553 (880)
258 PF14193 DUF4315: Domain of un 84.3 3.7 7.9E-05 29.4 5.5 48 23-79 3-50 (83)
259 PF02388 FemAB: FemAB family; 84.3 8.5 0.00018 33.6 8.8 55 20-74 241-298 (406)
260 PF09726 Macoilin: Transmembra 84.3 4.6 0.0001 38.4 7.7 36 22-57 546-581 (697)
261 PF10018 Med4: Vitamin-D-recep 84.2 18 0.0004 28.4 11.1 47 16-62 14-63 (188)
262 COG5493 Uncharacterized conser 84.2 6.6 0.00014 33.1 7.7 63 21-83 46-115 (231)
263 PF14257 DUF4349: Domain of un 84.1 6.8 0.00015 31.8 7.7 50 25-74 136-187 (262)
264 PF13600 DUF4140: N-terminal d 84.1 1.7 3.6E-05 30.6 3.7 37 38-74 66-102 (104)
265 PF13870 DUF4201: Domain of un 84.0 12 0.00026 28.8 8.7 51 23-73 86-136 (177)
266 KOG4348 Adaptor protein CMS/SE 84.0 4.8 0.0001 37.6 7.4 51 22-72 570-624 (627)
267 PF15188 CCDC-167: Coiled-coil 83.9 6.3 0.00014 28.5 6.6 48 28-75 5-62 (85)
268 PF05700 BCAS2: Breast carcino 83.9 10 0.00022 30.7 8.5 32 44-75 177-208 (221)
269 PF06785 UPF0242: Uncharacteri 83.8 7 0.00015 35.2 8.1 44 24-67 130-173 (401)
270 TIGR00414 serS seryl-tRNA synt 83.7 8.4 0.00018 34.0 8.6 57 19-75 42-102 (418)
271 PF04012 PspA_IM30: PspA/IM30 83.7 16 0.00034 28.8 9.4 56 18-73 95-150 (221)
272 TIGR02977 phageshock_pspA phag 83.6 13 0.00029 29.7 9.1 54 21-74 99-152 (219)
273 COG3879 Uncharacterized protei 83.6 5.7 0.00012 33.8 7.2 50 25-74 47-100 (247)
274 KOG0804 Cytoplasmic Zn-finger 83.6 5.7 0.00012 36.7 7.7 52 24-75 392-447 (493)
275 PF04136 Sec34: Sec34-like fam 83.3 16 0.00034 28.3 9.1 56 20-75 20-75 (157)
276 PF06657 Cep57_MT_bd: Centroso 83.2 13 0.00027 26.1 7.8 56 19-74 15-75 (79)
277 PF14931 IFT20: Intraflagellar 83.2 18 0.00038 27.4 9.4 61 15-75 42-106 (120)
278 TIGR02338 gimC_beta prefoldin, 83.2 6.6 0.00014 28.3 6.6 40 15-54 61-100 (110)
279 COG1730 GIM5 Predicted prefold 83.2 7.3 0.00016 30.5 7.2 42 23-64 96-137 (145)
280 PRK04863 mukB cell division pr 83.2 6.1 0.00013 40.7 8.4 64 11-74 975-1038(1486)
281 PF03954 Lectin_N: Hepatic lec 83.0 3.6 7.9E-05 32.3 5.4 51 24-74 58-112 (138)
282 COG1196 Smc Chromosome segrega 82.9 9.1 0.0002 37.7 9.3 15 25-39 734-748 (1163)
283 cd07429 Cby_like Chibby, a nuc 82.9 3 6.5E-05 31.4 4.8 35 27-61 71-105 (108)
284 PF09730 BicD: Microtubule-ass 82.9 4.8 0.0001 38.7 7.2 46 24-69 65-117 (717)
285 PF14523 Syntaxin_2: Syntaxin- 82.9 9.7 0.00021 26.2 7.1 18 57-74 65-82 (102)
286 TIGR01000 bacteriocin_acc bact 82.8 12 0.00026 32.8 9.2 26 15-40 237-262 (457)
287 PRK04406 hypothetical protein; 82.8 9.4 0.0002 26.6 7.0 40 22-61 12-51 (75)
288 PLN02678 seryl-tRNA synthetase 82.8 8.8 0.00019 34.7 8.5 57 19-75 45-104 (448)
289 KOG2264 Exostosin EXT1L [Signa 82.5 9 0.0002 37.0 8.8 60 15-74 80-139 (907)
290 KOG4643 Uncharacterized coiled 82.5 9.3 0.0002 38.6 9.1 62 14-75 495-556 (1195)
291 PF15035 Rootletin: Ciliary ro 82.3 11 0.00024 30.2 8.1 36 24-59 84-119 (182)
292 PF04645 DUF603: Protein of un 82.2 7.1 0.00015 31.9 7.0 49 24-72 108-161 (181)
293 PF09730 BicD: Microtubule-ass 82.1 7.1 0.00015 37.6 8.0 19 24-42 44-62 (717)
294 PF05377 FlaC_arch: Flagella a 82.0 7.5 0.00016 26.2 6.0 46 31-76 3-48 (55)
295 KOG3119 Basic region leucine z 82.0 8.7 0.00019 32.2 7.7 55 22-76 195-249 (269)
296 PF08826 DMPK_coil: DMPK coile 81.9 12 0.00026 25.4 7.0 45 31-75 14-58 (61)
297 PF08286 Spc24: Spc24 subunit 81.8 0.44 9.6E-06 35.0 0.0 43 32-74 3-45 (118)
298 TIGR00293 prefoldin, archaeal 81.8 5.4 0.00012 28.8 5.7 38 24-61 2-39 (126)
299 TIGR00634 recN DNA repair prot 81.7 5.8 0.00013 35.9 7.1 41 24-64 157-197 (563)
300 PF10779 XhlA: Haemolysin XhlA 81.5 14 0.0003 25.0 7.3 45 24-75 2-46 (71)
301 PRK09973 putative outer membra 81.4 11 0.00024 27.3 7.1 40 23-62 26-65 (85)
302 PF10267 Tmemb_cc2: Predicted 81.3 8.7 0.00019 34.4 7.9 27 16-42 214-240 (395)
303 TIGR03007 pepcterm_ChnLen poly 81.3 9.8 0.00021 33.2 8.1 10 111-120 453-462 (498)
304 PF15458 NTR2: Nineteen comple 81.3 8.1 0.00018 32.1 7.3 43 31-73 211-253 (254)
305 PF05103 DivIVA: DivIVA protei 81.3 0.76 1.7E-05 33.0 1.1 43 30-72 27-69 (131)
306 PRK14127 cell division protein 81.2 5.2 0.00011 30.0 5.5 38 22-59 31-68 (109)
307 PF12999 PRKCSH-like: Glucosid 81.2 9.8 0.00021 30.8 7.5 59 11-71 117-175 (176)
308 PF08647 BRE1: BRE1 E3 ubiquit 81.1 17 0.00037 25.9 9.0 49 26-74 1-49 (96)
309 KOG4343 bZIP transcription fac 81.1 3.5 7.7E-05 39.0 5.5 48 34-81 301-348 (655)
310 PF14988 DUF4515: Domain of un 81.0 13 0.00027 30.3 8.1 47 23-69 158-204 (206)
311 PF13514 AAA_27: AAA domain 81.0 13 0.00028 36.4 9.5 64 11-74 147-213 (1111)
312 KOG3647 Predicted coiled-coil 81.0 7.1 0.00015 34.3 7.0 61 24-84 108-169 (338)
313 PF04822 Takusan: Takusan; In 81.0 3.2 7E-05 29.8 4.2 25 35-59 19-43 (84)
314 PRK14161 heat shock protein Gr 80.9 5.8 0.00013 31.7 6.1 41 13-53 11-51 (178)
315 KOG3433 Protein involved in me 80.9 11 0.00024 31.3 7.7 31 18-48 78-108 (203)
316 TIGR02680 conserved hypothetic 80.9 11 0.00024 38.1 9.2 40 23-62 285-324 (1353)
317 PRK13923 putative spore coat p 80.8 15 0.00032 29.7 8.3 22 29-50 112-133 (170)
318 PF09755 DUF2046: Uncharacteri 80.7 18 0.00039 31.8 9.4 9 44-52 144-152 (310)
319 PRK04778 septation ring format 80.6 15 0.00032 33.6 9.2 59 16-74 378-436 (569)
320 PF08738 Gon7: Gon7 family; I 80.5 8.9 0.00019 28.5 6.5 39 21-59 54-93 (103)
321 PF12711 Kinesin-relat_1: Kine 80.5 9.4 0.0002 27.7 6.5 11 51-61 53-63 (86)
322 COG5509 Uncharacterized small 80.3 6.2 0.00013 27.5 5.2 36 12-52 14-49 (65)
323 COG2841 Uncharacterized protei 80.3 10 0.00022 27.0 6.4 51 18-68 7-65 (72)
324 PF02050 FliJ: Flagellar FliJ 80.2 15 0.00033 24.7 8.3 25 16-40 7-31 (123)
325 PF04849 HAP1_N: HAP1 N-termin 80.1 13 0.00028 32.5 8.4 37 38-74 163-199 (306)
326 KOG3433 Protein involved in me 80.1 16 0.00034 30.4 8.4 49 21-69 95-143 (203)
327 PRK04863 mukB cell division pr 80.1 12 0.00027 38.5 9.4 42 33-74 381-422 (1486)
328 COG5185 HEC1 Protein involved 80.1 8.2 0.00018 36.3 7.5 59 16-77 485-547 (622)
329 PF11544 Spc42p: Spindle pole 80.0 17 0.00036 26.1 7.5 30 30-59 7-36 (76)
330 PF07047 OPA3: Optic atrophy 3 80.0 17 0.00036 27.4 8.0 9 14-22 77-85 (134)
331 PRK05771 V-type ATP synthase s 80.0 9.9 0.00021 35.0 8.0 50 20-69 214-264 (646)
332 PF07246 Phlebovirus_NSM: Phle 80.0 7.4 0.00016 33.4 6.7 52 23-75 177-228 (264)
333 PF01920 Prefoldin_2: Prefoldi 80.0 11 0.00024 25.8 6.5 30 44-73 71-100 (106)
334 PF05600 DUF773: Protein of un 79.9 13 0.00028 34.0 8.7 54 21-74 439-492 (507)
335 PF10779 XhlA: Haemolysin XhlA 79.9 10 0.00022 25.5 6.2 33 41-73 5-37 (71)
336 TIGR02338 gimC_beta prefoldin, 79.9 8.5 0.00018 27.8 6.2 37 39-75 71-107 (110)
337 PF07412 Geminin: Geminin; In 79.8 5.7 0.00012 32.8 5.8 28 36-63 126-153 (200)
338 PRK10698 phage shock protein P 79.7 22 0.00047 29.0 9.1 53 21-73 99-151 (222)
339 PF10226 DUF2216: Uncharacteri 79.7 10 0.00022 31.4 7.1 22 23-44 57-78 (195)
340 PRK00295 hypothetical protein; 79.7 12 0.00026 25.5 6.5 47 23-69 7-53 (68)
341 PF02994 Transposase_22: L1 tr 79.6 8.9 0.00019 33.5 7.2 52 24-75 140-191 (370)
342 KOG2751 Beclin-like protein [S 79.4 6.8 0.00015 35.9 6.6 21 47-67 181-201 (447)
343 PF02996 Prefoldin: Prefoldin 79.4 8.4 0.00018 27.2 5.9 30 40-69 89-118 (120)
344 PF08657 DASH_Spc34: DASH comp 79.3 18 0.00038 30.6 8.7 39 39-77 177-215 (259)
345 KOG0964 Structural maintenance 79.3 9.9 0.00022 38.4 8.1 60 15-74 259-318 (1200)
346 KOG0243 Kinesin-like protein [ 79.2 5.8 0.00013 39.7 6.6 61 7-74 397-466 (1041)
347 KOG4196 bZIP transcription fac 79.1 10 0.00023 29.7 6.7 31 33-63 79-109 (135)
348 KOG4005 Transcription factor X 79.1 9.7 0.00021 32.9 7.1 41 24-64 107-147 (292)
349 PRK14151 heat shock protein Gr 79.0 6.1 0.00013 31.5 5.6 32 38-69 23-54 (176)
350 PRK14158 heat shock protein Gr 78.9 7.7 0.00017 31.5 6.2 33 37-69 42-74 (194)
351 PF12938 M_domain: M domain of 78.8 6.9 0.00015 33.0 6.1 57 18-74 147-203 (235)
352 PF03980 Nnf1: Nnf1 ; InterPr 78.7 5.7 0.00012 28.4 4.9 28 27-54 79-106 (109)
353 KOG0982 Centrosomal protein Nu 78.7 13 0.00027 34.5 8.1 56 19-74 295-350 (502)
354 PRK04654 sec-independent trans 78.7 23 0.00051 29.6 9.1 18 20-37 33-50 (214)
355 PRK14143 heat shock protein Gr 78.6 7.5 0.00016 32.5 6.2 26 25-50 71-96 (238)
356 cd00890 Prefoldin Prefoldin is 78.5 12 0.00026 26.5 6.6 31 26-56 92-122 (129)
357 PF11068 YlqD: YlqD protein; 78.5 28 0.0006 26.7 10.0 64 12-75 18-86 (131)
358 COG5185 HEC1 Protein involved 78.4 13 0.00027 35.1 8.1 56 20-75 263-321 (622)
359 PF07334 IFP_35_N: Interferon- 78.3 5.1 0.00011 28.5 4.5 22 32-53 4-25 (76)
360 PF10224 DUF2205: Predicted co 78.3 20 0.00042 25.6 7.5 48 28-75 16-63 (80)
361 KOG0288 WD40 repeat protein Ti 78.3 19 0.0004 33.2 9.0 18 27-44 54-71 (459)
362 PF03980 Nnf1: Nnf1 ; InterPr 78.2 6.6 0.00014 28.0 5.1 23 44-66 82-104 (109)
363 PF13863 DUF4200: Domain of un 78.1 22 0.00048 25.4 8.5 31 44-74 76-106 (126)
364 PF04645 DUF603: Protein of un 78.1 11 0.00024 30.8 6.9 42 23-64 114-160 (181)
365 PF09755 DUF2046: Uncharacteri 78.0 13 0.00028 32.6 7.7 48 24-71 23-70 (310)
366 cd00584 Prefoldin_alpha Prefol 78.0 12 0.00025 27.2 6.5 36 38-73 90-125 (129)
367 PF04325 DUF465: Protein of un 77.9 7.3 0.00016 24.6 4.7 37 26-62 11-47 (49)
368 PF12128 DUF3584: Protein of u 77.9 17 0.00036 36.2 9.3 59 16-74 644-703 (1201)
369 PF04849 HAP1_N: HAP1 N-termin 77.8 16 0.00034 32.0 8.2 52 23-74 215-266 (306)
370 PRK14139 heat shock protein Gr 77.8 8 0.00017 31.2 6.0 29 24-52 35-63 (185)
371 PF05667 DUF812: Protein of un 77.8 21 0.00045 33.5 9.4 53 17-69 331-383 (594)
372 PRK03947 prefoldin subunit alp 77.7 14 0.00031 27.3 6.9 43 27-69 5-47 (140)
373 PRK14162 heat shock protein Gr 77.6 8.3 0.00018 31.4 6.1 27 43-69 47-73 (194)
374 PF05816 TelA: Toxic anion res 77.6 17 0.00037 31.0 8.3 71 2-75 61-135 (333)
375 PRK09343 prefoldin subunit bet 77.5 10 0.00023 28.1 6.2 45 31-75 67-111 (121)
376 PRK14011 prefoldin subunit alp 77.4 22 0.00048 27.5 8.1 53 16-74 86-138 (144)
377 KOG3650 Predicted coiled-coil 77.3 6.4 0.00014 30.0 5.0 59 17-75 45-103 (120)
378 PF09969 DUF2203: Uncharacteri 77.3 28 0.00061 26.1 9.2 62 16-77 5-71 (120)
379 PF11068 YlqD: YlqD protein; 77.2 21 0.00046 27.3 7.9 49 21-69 34-87 (131)
380 PF15294 Leu_zip: Leucine zipp 77.2 16 0.00036 31.4 8.0 36 21-56 132-174 (278)
381 PF05837 CENP-H: Centromere pr 77.2 25 0.00055 25.5 8.2 54 20-74 9-62 (106)
382 PF10046 BLOC1_2: Biogenesis o 77.1 24 0.00052 25.2 8.2 51 23-73 44-97 (99)
383 PF08912 Rho_Binding: Rho Bind 77.0 16 0.00035 25.6 6.6 31 28-58 3-33 (69)
384 PF09726 Macoilin: Transmembra 76.8 6.3 0.00014 37.5 5.9 10 26-35 423-432 (697)
385 PRK14154 heat shock protein Gr 76.8 7.8 0.00017 31.9 5.8 26 26-51 57-82 (208)
386 PF10482 CtIP_N: Tumour-suppre 76.8 13 0.00029 28.6 6.6 30 18-48 33-62 (120)
387 PF15619 Lebercilin: Ciliary p 76.8 19 0.00042 29.0 7.9 53 23-75 70-130 (194)
388 PF08961 DUF1875: Domain of un 76.8 0.79 1.7E-05 38.8 0.0 38 24-61 125-162 (243)
389 PF08781 DP: Transcription fac 76.3 18 0.0004 28.3 7.5 46 29-74 2-47 (142)
390 KOG0963 Transcription factor/C 76.3 18 0.0004 34.5 8.7 63 12-74 276-342 (629)
391 PF15458 NTR2: Nineteen comple 76.3 12 0.00025 31.2 6.8 50 14-66 204-253 (254)
392 PRK14147 heat shock protein Gr 76.0 8.2 0.00018 30.6 5.5 26 43-68 26-51 (172)
393 KOG3156 Uncharacterized membra 76.0 16 0.00034 30.8 7.4 41 34-74 100-141 (220)
394 PF13166 AAA_13: AAA domain 75.9 17 0.00037 33.1 8.2 47 29-75 425-471 (712)
395 PRK15178 Vi polysaccharide exp 75.8 5.7 0.00012 36.0 5.1 23 20-42 285-307 (434)
396 PRK02793 phi X174 lysis protei 75.8 18 0.00038 24.9 6.5 47 22-68 9-55 (72)
397 PF11382 DUF3186: Protein of u 75.8 6.7 0.00015 33.3 5.3 26 23-48 34-59 (308)
398 COG5509 Uncharacterized small 75.8 4.2 9E-05 28.3 3.3 24 51-74 27-50 (65)
399 COG4467 Regulator of replicati 75.7 19 0.0004 27.6 7.1 51 10-60 1-54 (114)
400 PRK00736 hypothetical protein; 75.7 16 0.00034 24.9 6.2 49 28-76 5-53 (68)
401 PRK15396 murein lipoprotein; P 75.6 21 0.00047 25.3 7.0 39 36-74 26-64 (78)
402 TIGR03495 phage_LysB phage lys 75.5 36 0.00077 26.4 9.2 60 15-74 27-86 (135)
403 PF04871 Uso1_p115_C: Uso1 / p 75.5 26 0.00057 26.6 8.0 15 21-35 34-48 (136)
404 PRK00736 hypothetical protein; 75.5 23 0.00049 24.1 8.7 47 23-69 7-53 (68)
405 KOG4603 TBP-1 interacting prot 75.4 17 0.00037 30.1 7.3 53 23-75 81-142 (201)
406 PF13166 AAA_13: AAA domain 75.4 26 0.00056 31.9 9.2 37 37-73 419-455 (712)
407 PF11180 DUF2968: Protein of u 75.2 41 0.00088 27.8 9.5 53 25-77 130-182 (192)
408 PF15369 KIAA1328: Uncharacter 75.1 22 0.00049 31.4 8.4 52 23-74 10-65 (328)
409 PRK10361 DNA recombination pro 75.1 31 0.00066 31.8 9.6 18 58-75 101-118 (475)
410 PF14389 Lzipper-MIP1: Leucine 75.1 16 0.00034 26.0 6.3 30 46-75 51-80 (88)
411 KOG1029 Endocytic adaptor prot 75.1 9.2 0.0002 38.0 6.5 54 23-76 467-520 (1118)
412 PF10883 DUF2681: Protein of u 75.1 29 0.00063 25.2 8.9 40 14-53 16-55 (87)
413 cd00890 Prefoldin Prefoldin is 75.0 12 0.00027 26.5 5.8 29 25-53 3-31 (129)
414 PF06818 Fez1: Fez1; InterPro 75.0 13 0.00029 30.6 6.7 51 23-73 68-148 (202)
415 PRK14155 heat shock protein Gr 74.7 7.4 0.00016 31.9 5.1 28 24-51 16-43 (208)
416 KOG0161 Myosin class II heavy 74.7 21 0.00045 38.1 9.4 50 16-65 1092-1141(1930)
417 PF10506 MCC-bdg_PDZ: PDZ doma 74.7 6.8 0.00015 27.1 4.2 33 24-56 1-33 (67)
418 PF09738 DUF2051: Double stran 74.7 20 0.00043 31.0 7.9 46 29-74 120-165 (302)
419 PRK14145 heat shock protein Gr 74.7 7.9 0.00017 31.6 5.3 38 33-70 43-80 (196)
420 cd00584 Prefoldin_alpha Prefol 74.7 12 0.00027 27.0 5.8 32 25-56 3-34 (129)
421 PF08286 Spc24: Spc24 subunit 74.6 0.91 2E-05 33.3 -0.2 43 25-67 3-45 (118)
422 PF03148 Tektin: Tektin family 74.6 18 0.00039 31.5 7.8 47 24-70 320-366 (384)
423 PF05557 MAD: Mitotic checkpoi 74.6 0.98 2.1E-05 42.0 0.0 56 18-73 340-395 (722)
424 PF06120 Phage_HK97_TLTM: Tail 74.6 25 0.00053 30.6 8.5 42 33-74 72-113 (301)
425 COG4985 ABC-type phosphate tra 74.4 30 0.00066 30.0 8.8 31 44-74 216-246 (289)
426 PF06810 Phage_GP20: Phage min 74.3 24 0.00051 27.4 7.6 36 23-58 29-67 (155)
427 PF01496 V_ATPase_I: V-type AT 74.2 1 2.2E-05 42.1 0.0 49 23-71 69-117 (759)
428 PF10267 Tmemb_cc2: Predicted 74.1 38 0.00082 30.5 9.8 30 20-49 211-240 (395)
429 PF11365 DUF3166: Protein of u 74.1 18 0.00039 26.7 6.5 40 24-63 4-43 (96)
430 PF04420 CHD5: CHD5-like prote 74.0 9.8 0.00021 29.5 5.4 23 31-53 36-58 (161)
431 KOG2629 Peroxisomal membrane a 73.9 27 0.00059 30.6 8.6 59 14-75 129-187 (300)
432 KOG0612 Rho-associated, coiled 73.8 23 0.0005 36.4 9.1 60 14-73 458-525 (1317)
433 PF07352 Phage_Mu_Gam: Bacteri 73.8 33 0.00071 25.9 8.1 53 16-74 5-57 (149)
434 PF04380 BMFP: Membrane fusoge 73.7 27 0.00059 24.2 7.5 22 15-36 7-28 (79)
435 PRK00846 hypothetical protein; 73.7 29 0.00063 24.6 7.5 46 31-76 9-54 (77)
436 KOG0161 Myosin class II heavy 73.6 23 0.0005 37.8 9.3 59 16-74 1085-1143(1930)
437 PF05546 She9_MDM33: She9 / Md 73.5 33 0.0007 28.6 8.6 60 16-75 18-79 (207)
438 PF05565 Sipho_Gp157: Siphovir 73.5 40 0.00086 26.0 9.3 60 15-74 26-86 (162)
439 KOG0483 Transcription factor H 73.5 7.5 0.00016 31.8 4.8 35 39-73 109-143 (198)
440 COG1842 PspA Phage shock prote 73.4 18 0.00039 29.9 7.1 34 26-59 111-144 (225)
441 COG4372 Uncharacterized protei 73.3 24 0.00052 32.6 8.4 56 19-74 72-127 (499)
442 PF09744 Jnk-SapK_ap_N: JNK_SA 73.2 41 0.00089 26.5 8.8 25 52-76 85-109 (158)
443 PF05600 DUF773: Protein of un 73.2 24 0.00052 32.3 8.5 56 20-75 431-486 (507)
444 PRK10803 tol-pal system protei 72.9 22 0.00048 29.5 7.6 38 37-74 56-93 (263)
445 PRK01156 chromosome segregatio 72.9 34 0.00073 32.3 9.6 34 29-62 205-238 (895)
446 PF07407 Seadorna_VP6: Seadorn 72.9 13 0.00027 33.7 6.4 31 36-66 33-63 (420)
447 TIGR02680 conserved hypothetic 72.8 26 0.00057 35.5 9.3 13 61-73 309-321 (1353)
448 PF10205 KLRAQ: Predicted coil 72.8 37 0.00081 25.4 8.3 49 27-75 25-73 (102)
449 KOG4360 Uncharacterized coiled 72.7 30 0.00065 32.8 9.0 64 14-77 240-303 (596)
450 PF06148 COG2: COG (conserved 72.7 5.7 0.00012 29.3 3.7 38 24-61 79-116 (133)
451 PF06120 Phage_HK97_TLTM: Tail 72.6 14 0.0003 32.1 6.5 11 64-74 142-152 (301)
452 PRK06800 fliH flagellar assemb 72.5 22 0.00049 29.8 7.4 39 31-69 41-79 (228)
453 PF08700 Vps51: Vps51/Vps67; 72.5 26 0.00056 23.4 8.4 25 16-40 21-45 (87)
454 PF14257 DUF4349: Domain of un 72.3 28 0.00061 28.2 7.9 66 9-74 127-194 (262)
455 PF09787 Golgin_A5: Golgin sub 72.1 6.4 0.00014 35.5 4.6 19 47-65 279-297 (511)
456 PLN02320 seryl-tRNA synthetase 72.0 28 0.00061 32.2 8.7 23 53-75 134-156 (502)
457 cd07627 BAR_Vps5p The Bin/Amph 72.0 23 0.0005 28.2 7.2 33 41-73 142-174 (216)
458 PF06305 DUF1049: Protein of u 71.9 4.6 0.0001 26.1 2.7 22 33-54 46-67 (68)
459 PF10168 Nup88: Nuclear pore c 71.9 25 0.00055 33.6 8.6 56 13-68 538-605 (717)
460 PRK10865 protein disaggregatio 71.9 30 0.00065 33.4 9.1 17 20-36 416-432 (857)
461 KOG0241 Kinesin-like protein [ 71.9 22 0.00047 36.5 8.3 57 19-75 362-430 (1714)
462 PHA00489 scaffolding protein 71.9 18 0.00039 27.0 6.1 45 18-62 24-68 (101)
463 TIGR03545 conserved hypothetic 71.6 13 0.00028 34.4 6.5 29 49-77 230-258 (555)
464 PTZ00464 SNF-7-like protein; P 71.6 37 0.00081 27.8 8.5 31 14-47 14-44 (211)
465 PRK09413 IS2 repressor TnpA; R 71.5 12 0.00026 27.3 5.1 18 42-59 78-95 (121)
466 PF10212 TTKRSYEDQ: Predicted 71.5 38 0.00082 31.7 9.4 56 19-74 425-480 (518)
467 cd07596 BAR_SNX The Bin/Amphip 71.5 25 0.00054 26.4 7.0 14 46-59 149-162 (218)
468 PRK10636 putative ABC transpor 71.4 23 0.00049 32.7 8.0 29 23-51 558-586 (638)
469 PF06419 COG6: Conserved oligo 71.4 36 0.00078 31.6 9.3 58 17-74 41-98 (618)
470 KOG0946 ER-Golgi vesicle-tethe 71.4 22 0.00047 35.4 8.1 62 19-80 648-716 (970)
471 PRK00591 prfA peptide chain re 71.4 49 0.0011 29.3 9.7 26 51-76 77-102 (359)
472 KOG0995 Centromere-associated 71.2 19 0.00041 34.1 7.4 44 20-63 279-322 (581)
473 KOG2077 JNK/SAPK-associated pr 71.1 16 0.00036 35.2 7.1 45 24-68 325-369 (832)
474 KOG0978 E3 ubiquitin ligase in 71.0 35 0.00077 33.0 9.3 62 16-77 561-622 (698)
475 PF09738 DUF2051: Double stran 71.0 31 0.00067 29.8 8.3 49 26-74 124-172 (302)
476 PF11690 DUF3287: Protein of u 71.0 19 0.0004 27.2 6.1 12 68-79 70-81 (109)
477 PF13476 AAA_23: AAA domain; P 70.9 1.3 2.8E-05 32.3 -0.1 19 54-72 183-201 (202)
478 PRK14163 heat shock protein Gr 70.9 14 0.00031 30.6 6.0 25 44-68 49-73 (214)
479 KOG4378 Nuclear protein COP1 [ 70.8 14 0.00031 35.1 6.5 49 14-63 623-671 (673)
480 COG1422 Predicted membrane pro 70.8 16 0.00035 30.3 6.2 26 28-53 72-97 (201)
481 KOG0249 LAR-interacting protei 70.7 23 0.0005 34.9 8.1 48 28-75 209-256 (916)
482 PF15035 Rootletin: Ciliary ro 70.6 53 0.0012 26.3 9.1 56 18-73 64-119 (182)
483 PF14712 Snapin_Pallidin: Snap 70.6 31 0.00068 23.6 7.8 35 22-56 15-49 (92)
484 TIGR01005 eps_transp_fam exopo 70.6 26 0.00056 32.5 8.2 54 23-76 318-372 (754)
485 PF06637 PV-1: PV-1 protein (P 70.6 25 0.00054 32.2 7.8 55 21-75 285-375 (442)
486 KOG4643 Uncharacterized coiled 70.6 32 0.0007 35.0 9.2 57 18-74 398-454 (1195)
487 PF10174 Cast: RIM-binding pro 70.4 32 0.00069 33.4 9.0 58 16-73 352-409 (775)
488 KOG4571 Activating transcripti 70.3 25 0.00054 30.7 7.5 49 19-67 239-287 (294)
489 PF15397 DUF4618: Domain of un 70.3 40 0.00086 28.8 8.6 62 12-73 162-224 (258)
490 PRK14146 heat shock protein Gr 70.3 14 0.0003 30.5 5.8 40 35-74 54-93 (215)
491 KOG0979 Structural maintenance 70.3 19 0.00041 36.3 7.5 54 23-76 652-705 (1072)
492 TIGR02231 conserved hypothetic 70.3 21 0.00046 31.9 7.3 46 16-61 126-171 (525)
493 PF03245 Phage_lysis: Bacterio 70.2 40 0.00087 25.2 7.8 52 23-74 9-60 (125)
494 KOG4343 bZIP transcription fac 70.2 7.7 0.00017 36.8 4.7 42 21-62 302-343 (655)
495 PF06785 UPF0242: Uncharacteri 70.2 18 0.00038 32.7 6.7 52 24-75 102-153 (401)
496 KOG0243 Kinesin-like protein [ 70.2 30 0.00065 34.9 8.9 58 18-75 445-502 (1041)
497 PF05701 WEMBL: Weak chloropla 70.2 37 0.0008 30.9 9.0 60 16-75 297-356 (522)
498 PRK01203 prefoldin subunit alp 70.2 17 0.00038 28.0 5.9 40 24-63 3-42 (130)
499 TIGR00019 prfA peptide chain r 70.1 56 0.0012 29.0 9.8 78 3-80 25-106 (360)
500 PF01496 V_ATPase_I: V-type AT 70.1 27 0.00058 32.8 8.2 50 21-70 229-279 (759)
No 1
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=97.59 E-value=0.00092 Score=46.54 Aligned_cols=55 Identities=35% Similarity=0.520 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.++.+|-.+|+.+=+.+..|+.++.+|+.+.++|.+++..|+.+-++|.++..+
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777777777777666666666666666666655443
No 2
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=97.59 E-value=0.00081 Score=48.21 Aligned_cols=58 Identities=19% Similarity=0.452 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
-||.-+.=|+-|+++||+.|..|.++...+...+.+|+.|+..||.|-..-+..|+++
T Consensus 15 qAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555578899999999999999999999999999999999999988887777763
No 3
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=97.29 E-value=0.0021 Score=51.17 Aligned_cols=60 Identities=25% Similarity=0.498 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 16 LSDVVRMMEQLRTE---AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 16 L~DAir~lkqLr~e---~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|.|.|++|.+|.+. .+.|+.+|..|++++..|..+-.+|+.|+..|+.+..-++..+++|
T Consensus 82 l~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L 144 (161)
T TIGR02894 82 LQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL 144 (161)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999974 7788889999999998888888888899999988888888888874
No 4
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.0045 Score=44.14 Aligned_cols=58 Identities=17% Similarity=0.459 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
-||.-+.=|+-|+++||+.|.+|+.+..++..-+..|+.|+..||.|-..-+..|+++
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666678999999999999999999999999999999999999988777777763
No 5
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=97.11 E-value=0.0095 Score=41.46 Aligned_cols=46 Identities=28% Similarity=0.514 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032660 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
.-||.-+.-|+.|+++||++|..|.++...|+.|-+.|++|...-+
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566677777777777766555555544444444444333
No 6
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=96.95 E-value=0.0075 Score=45.56 Aligned_cols=53 Identities=32% Similarity=0.574 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
-.+.+|..|.+++.++..++..|++++..|..+|++|++|..+|-.+.+.++.
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~ 65 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRA 65 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999998877776666543
No 7
>smart00353 HLH helix loop helix domain.
Probab=96.78 E-value=0.0019 Score=40.20 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.9
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHH
Q 032660 7 PPKTDKATILSDVVRMMEQLRTEAQ 31 (136)
Q Consensus 7 p~K~DKAsIL~DAir~lkqLr~e~~ 31 (136)
..|.||++||.+|+.|++.|+.+++
T Consensus 28 ~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 28 NKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4799999999999999999998875
No 8
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=96.73 E-value=0.0065 Score=46.56 Aligned_cols=55 Identities=29% Similarity=0.564 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHhccC
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEK--NELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EK--nELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
+++|+.|+..|+.++..|+++.+.|..+- .||+++...|+.|++.|+..|..+..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888888888888888888888877766 68899999999999999999998754
No 9
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=96.53 E-value=0.017 Score=52.54 Aligned_cols=52 Identities=29% Similarity=0.450 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---------------HHHHHHHHHHHhHHHHHHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKA---------------EKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~---------------EKnELrdEk~~Lk~eke~Le~q 71 (136)
+--+|++|.++++|..+|+.|.+|++.|+. |+.||.+|...|+.+..+++.+
T Consensus 65 va~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~ 131 (472)
T TIGR03752 65 VAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGL 131 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 335789999999999999999888877754 4455555555555554444433
No 10
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.45 E-value=0.03 Score=40.24 Aligned_cols=55 Identities=29% Similarity=0.422 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
..++.+|-+.|+.-=+.+.-|+-|+.+||.+.+.|.+|...+++..+.|+++-+.
T Consensus 3 ~EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~q 57 (79)
T PRK15422 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNH 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4689999999999999999999999999999999999988876666666655443
No 11
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.28 E-value=0.045 Score=37.80 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
=|.+|-...++|+.+|..|.++...+..|+..|.+.+..-.+.+|.+=..|++|-
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3677888889999999999999999999999999999888888888888888763
No 12
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=96.25 E-value=0.0057 Score=38.53 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=22.1
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHH
Q 032660 7 PPKTDKATILSDVVRMMEQLRTEA 30 (136)
Q Consensus 7 p~K~DKAsIL~DAir~lkqLr~e~ 30 (136)
..|.||++||..|+.||+.|+.++
T Consensus 36 ~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 36 SKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHh
Confidence 379999999999999999999875
No 13
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=96.18 E-value=0.074 Score=41.03 Aligned_cols=72 Identities=25% Similarity=0.473 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCCCCCC
Q 032660 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSGFLPHP 85 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p~f~ph~ 85 (136)
...+.+++.|...|.....+..++..+..++.....+.+++|++...++.+.+++..+...+...-|.+..|
T Consensus 70 ~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P 141 (177)
T PF13870_consen 70 KKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVP 141 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 346789999999999999999999999999999999999999999999999999999999987766655544
No 14
>smart00338 BRLZ basic region leucin zipper.
Probab=96.15 E-value=0.025 Score=37.27 Aligned_cols=36 Identities=28% Similarity=0.533 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
++.+|..+++.|..+|..|..++..|..|...|+++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554444444444443
No 15
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=96.11 E-value=0.031 Score=36.84 Aligned_cols=38 Identities=37% Similarity=0.598 Sum_probs=18.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 35 QSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 35 ~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
.....|++++..|+.|...|+.+...|+.++..|..++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444455555555555555555555555554443
No 16
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=96.10 E-value=0.051 Score=46.36 Aligned_cols=58 Identities=28% Similarity=0.543 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|--+..-+++...+.+.++++.|.++..+|..|-||++++..+|+.|+.+|+..++.+
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555566777778888888889999999999999999999888888888888887764
No 17
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=96.09 E-value=0.031 Score=47.63 Aligned_cols=45 Identities=38% Similarity=0.612 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
.++..++++|+.+...|.++++.|..|+.+|.+|...|+.+.+.|
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555554444444444444444444444443
No 18
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.05 E-value=0.05 Score=40.35 Aligned_cols=52 Identities=29% Similarity=0.495 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+|-..+..|.+....|.+++..||..-.+|-+||++|+-|-+.|...|....
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666677777777777777777777777777777777777777666643
No 19
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=0.065 Score=45.63 Aligned_cols=63 Identities=22% Similarity=0.429 Sum_probs=49.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 12 KATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 12 KAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+=+.|.++-.=++++..|+++|-...+.++.++.+++.|-+++..|...|+.+|+.|+..+..
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777778888888888888888888888888888888888888888888777766554
No 20
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=95.96 E-value=0.011 Score=37.53 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.9
Q ss_pred CCCCCchhhhHHHHHHHHHHHH
Q 032660 6 RPPKTDKATILSDVVRMMEQLR 27 (136)
Q Consensus 6 rp~K~DKAsIL~DAir~lkqLr 27 (136)
...|.||++||..||.||++|+
T Consensus 34 ~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 34 SSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp TTSSSSHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhC
Confidence 4478999999999999999985
No 21
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.93 E-value=0.027 Score=36.10 Aligned_cols=38 Identities=39% Similarity=0.518 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
||-..-.-||..+.+|..+...|..|+.+|+.|...|+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555554444443
No 22
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.93 E-value=0.091 Score=39.22 Aligned_cols=59 Identities=24% Similarity=0.480 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELK----AEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~----~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+++|.-|..||.+.+.++..+..|+.+....+ ..+....+++..|+.+++.++..+..+
T Consensus 55 a~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 55 AEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999999999988865443 333344445555666655555554443
No 23
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.91 E-value=0.064 Score=43.63 Aligned_cols=54 Identities=20% Similarity=0.349 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHH-----------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQE-----------KIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~e-----------e~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
..|..|..|+++|+++...+.. +....+.+.++|++|++.|+.+.+.+++++..
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444444333 33333334444566666555555555555443
No 24
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=95.79 E-value=0.016 Score=46.21 Aligned_cols=46 Identities=28% Similarity=0.485 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
|.|+-+..+.-=+.|.-|++|+ .||..||.|.++||-|...|.+++
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888999999999 788899999999999988888887
No 25
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=95.63 E-value=0.093 Score=49.91 Aligned_cols=96 Identities=25% Similarity=0.446 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc---cCCCCCCCC---CCCCchhhhhh
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM---SAPSGFLPH---PSSMSAAFAAQ 95 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~---~~~p~f~ph---~~~~p~a~aa~ 95 (136)
-|.+|.+.-|+|..+++.+..+|.+||.+.-.-+-|..+||.+||.-|.|++.+ |.|--|+|- |-.+|+.-.+.
T Consensus 94 EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~n~pkl~LP~sllP~~~pr~l~pp 173 (907)
T KOG2264|consen 94 ELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRETNNPKLFLPFSLLPLQIPRELEPP 173 (907)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhhcCCceeeccccCcccCcccCCCc
Confidence 356677777777788888888888888888888888899999999999998885 333334443 12334333344
Q ss_pred hhhccCcccccCCCC------Ccccccc
Q 032660 96 SQVASNKLVPFIGYP------GVAMWQF 117 (136)
Q Consensus 96 ~qa~~~k~~p~~~yp------g~~mWq~ 117 (136)
.|+++.-+--+..|. |||.+-|
T Consensus 174 ~~~~~c~lhncfdySRCsltSgfPVYvy 201 (907)
T KOG2264|consen 174 SQISPCQLHNCFDYSRCSLTSGFPVYVY 201 (907)
T ss_pred cccCcccchhccccccccccCCceeEEe
Confidence 466666665555663 5555544
No 26
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=95.61 E-value=0.2 Score=35.72 Aligned_cols=47 Identities=30% Similarity=0.420 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
-=..|..|+..|..+...|.+.+..++.|..-|+.||..|..=|++|
T Consensus 17 ~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 17 EKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578889999999999999999999999999999999999999988
No 27
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=95.53 E-value=0.15 Score=35.27 Aligned_cols=60 Identities=30% Similarity=0.463 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|.+-=..|.+|+.|-++|....-.+...|+.|.+.-.++..+...|+..+++++.++..+
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445788999999999999999999999999888888888888888888888877664
No 28
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=95.48 E-value=0.11 Score=34.22 Aligned_cols=36 Identities=28% Similarity=0.576 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
++.+|..++..|..+|..|.+++..|+.+...|+.+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556666666666666666666666655555555544
No 29
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.40 E-value=0.099 Score=44.26 Aligned_cols=50 Identities=28% Similarity=0.468 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
|..||.++..++.+++.++.++.+|+.++++++++...++.++.+++.++
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333333333333333
No 30
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=95.35 E-value=0.14 Score=36.32 Aligned_cols=52 Identities=31% Similarity=0.533 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKA---EKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~---EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.++|+.+++.|+.+...+..++..++. +..+|.+|-..++.++..++.++..
T Consensus 38 ~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 38 RRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888776665 4566666666666666666666555
No 31
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.26 E-value=0.12 Score=40.12 Aligned_cols=50 Identities=32% Similarity=0.497 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+..+++.-|+++..|++++..++.+.|.|+.|-..|.+|++.|.++++-+
T Consensus 43 ~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 43 LILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677888888999999999999999999999999999998888775
No 32
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.21 E-value=0.11 Score=41.61 Aligned_cols=55 Identities=25% Similarity=0.363 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
.....+.|+.|.++|+.++..|+++++.|..|.++|..+...++.|-+-|=+-+.
T Consensus 95 ~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 95 TNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888888888888888888888888888888888877776655443
No 33
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.18 E-value=0.16 Score=38.44 Aligned_cols=60 Identities=25% Similarity=0.410 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHh
Q 032660 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQ---RLKADKEKLEQQVKA 74 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~---~Lk~eke~Le~qlk~ 74 (136)
++.-=-.-|+++.+|+..|+.++..|+.+...+..|.-.|..++. .+..+...|+.+++.
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~ 79 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEE 79 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334457788888888888888888777777777766666653 333444455555544
No 34
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.17 E-value=0.087 Score=33.72 Aligned_cols=39 Identities=28% Similarity=0.549 Sum_probs=19.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032660 33 LKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
|...++.|......|+.+-..|..||..|++++..|...
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555555554443
No 35
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=95.15 E-value=0.099 Score=44.66 Aligned_cols=46 Identities=37% Similarity=0.582 Sum_probs=29.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.-.||+..+.+.++..++..||.||++|+..|+++.+.++..|+.+
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~l 175 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL 175 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666666666666666666666666666666666664
No 36
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.15 E-value=0.23 Score=35.55 Aligned_cols=54 Identities=30% Similarity=0.427 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
..++.+|...++.--+.+.-|+-++.+||.++|.|..|-+.+....|.|+.+-.
T Consensus 3 lEv~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~ene 56 (79)
T COG3074 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENE 56 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999999999999988888888875433
No 37
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=95.10 E-value=0.1 Score=39.99 Aligned_cols=54 Identities=26% Similarity=0.541 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhcc
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEK--QRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk--~~Lk~eke~Le~qlk~~~ 76 (136)
+.+|..++..|++++..|..+++.|..|.+.|+.+- ..|...|+.|+.+++.+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~ 129 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELE 129 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666666666554 356667777777766654
No 38
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.04 E-value=0.19 Score=37.70 Aligned_cols=51 Identities=22% Similarity=0.381 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+|-..+..|......|.+++..||..-.+|-+||++|+-|-+.|...|..+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555556666666666666666666666666666666666666555554
No 39
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.03 E-value=0.21 Score=42.93 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+-..+-=..|+||..|-++|..+|..|++..+.|-++-+||+.+..-|..+.-++.+|-+.
T Consensus 90 aRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344555678999999999999999999999999999999999999999999999887655
No 40
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.98 E-value=0.14 Score=43.67 Aligned_cols=66 Identities=26% Similarity=0.462 Sum_probs=51.1
Q ss_pred hhhhHHH----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 032660 12 KATILSD----VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 12 KAsIL~D----Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
++.+++| .=.-++++..+.+.+..++++|...+.++..+.+++++|...+++++.+|+.++..+..
T Consensus 25 ~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 25 FAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred hhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 33457788888888888888888888888888888888888888888888888887643
No 41
>PRK11637 AmiB activator; Provisional
Probab=94.92 E-value=0.26 Score=42.79 Aligned_cols=59 Identities=12% Similarity=0.248 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.++..-+++|..+++.+..++..++.++..+..+.++|+++...++.+++.++.+|+.
T Consensus 70 ~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 70 RASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555555555555555554444
No 42
>PRK11637 AmiB activator; Provisional
Probab=94.79 E-value=0.28 Score=42.63 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 38 EDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
..+++++..+..+.+++..+...|+.+|..++.++..
T Consensus 85 ~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~ 121 (428)
T PRK11637 85 SQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAA 121 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444444333
No 43
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=94.70 E-value=0.2 Score=33.02 Aligned_cols=47 Identities=36% Similarity=0.562 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
..+..+++.+...|+.++..++.|..+|+.|...|+.+.+.++..-+
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34445555666666666666666666666677777666666666655
No 44
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=94.63 E-value=0.26 Score=40.80 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
-.+|.+++.|.+.|..|.....|+++...+.+|.|......+++|.++.+
T Consensus 31 e~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 31 EKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQ 80 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888887777765555555555444444444444333
No 45
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.63 E-value=0.38 Score=37.82 Aligned_cols=56 Identities=29% Similarity=0.439 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
--.-|.+|+.++..|+..+..|.+++++...--.-|+||...|..+..-+|.+++.
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~ 169 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRK 169 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666665555555555666666555555555555443
No 46
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.63 E-value=0.38 Score=33.13 Aligned_cols=52 Identities=21% Similarity=0.410 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHh
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKN-------ELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKn-------ELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.-||.....+-..++..+.+++.|..|++ +..+++..|++|.+.|..+++.
T Consensus 7 ~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 7 IATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777764 4567777888888888888765
No 47
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=94.56 E-value=0.2 Score=33.07 Aligned_cols=36 Identities=31% Similarity=0.412 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELR 55 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELr 55 (136)
+.-+.+++.|++.|+.+++.++.++.+|+.|.+.|+
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344567888888888888888888888888888883
No 48
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.56 E-value=0.33 Score=43.17 Aligned_cols=45 Identities=38% Similarity=0.469 Sum_probs=33.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 32 KLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+.+++.+.++.+..+|+.-..||+.-++.|+.++|+||+|+..|+
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~ 266 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQ 266 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777777778888888887777653
No 49
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.55 E-value=0.12 Score=47.93 Aligned_cols=38 Identities=32% Similarity=0.520 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 39 DLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 39 ~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
.|+...+-+..||.+|++||+.|+..+++|+..|..++
T Consensus 421 Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~ 458 (546)
T PF07888_consen 421 ELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVA 458 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445566678999999999999999999999999863
No 50
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=94.53 E-value=0.15 Score=32.42 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
..|..+.+.|..++..++.....=..+-..|+-+|..||.+|.++..|
T Consensus 2 ~~L~~~h~~Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~ll~q 49 (49)
T PF04325_consen 2 ARLFEEHHELDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRLLRQ 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777777777777776654444455667778888888888777654
No 51
>PRK09039 hypothetical protein; Validated
Probab=94.52 E-value=0.32 Score=41.93 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
++.+++-+-|..|+.||+.||+.+..|++.+...+.+..+.+.....|+.++++.=
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999888888888888887777663
No 52
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.48 E-value=0.18 Score=44.19 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=34.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCC
Q 032660 13 ATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPS 79 (136)
Q Consensus 13 AsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p 79 (136)
|++-+-+..-.++|..+..+|+.++..|+.+.++++.+.+.++. |+++++.+++.+..+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 66 (398)
T PTZ00454 7 AAVASSTTHTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKR-------ELIRAKEEVKRIQSVP 66 (398)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCC
Confidence 34444444555666666666666666666666666655555554 5555555555555555
No 53
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=94.45 E-value=0.25 Score=40.26 Aligned_cols=40 Identities=25% Similarity=0.501 Sum_probs=18.8
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
..+|+++|+.|++|+.+|+.+..+++ .|+.|-++|...|.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~----~l~~en~~L~~lL~ 110 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELE----QLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Confidence 34455555555555555555554331 33444444444443
No 54
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.45 E-value=0.48 Score=38.56 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032660 40 LQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 40 L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
....+.+|+.|..+|++|...++++.+.|+.+
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~ 161 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQ 161 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444333
No 55
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.42 E-value=0.29 Score=39.74 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=17.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 33 LKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|..++..|..++..|+...+.|......++.++++|+.|+..
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444444445555554444
No 56
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.39 E-value=0.4 Score=40.61 Aligned_cols=54 Identities=26% Similarity=0.385 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+-.-|.++..+++.+|.+...|+.+...++.+.+++.++++.++++|.+++..+
T Consensus 214 lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 214 LRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555555555554433
No 57
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.37 E-value=0.4 Score=39.38 Aligned_cols=52 Identities=29% Similarity=0.433 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
.+.=|-|-.|+++||.....|+|+.+.|-+....|..|++.|-++++.|+.+
T Consensus 59 l~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqee 110 (193)
T PF14662_consen 59 LQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEE 110 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555555555555555554444455555554444444444
No 58
>COG5570 Uncharacterized small protein [Function unknown]
Probab=94.37 E-value=0.16 Score=34.44 Aligned_cols=46 Identities=30% Similarity=0.446 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 27 RTEAQKLKQSTEDLQEKIKELK-------AEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~-------~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
-+-+..|...+..|+++|++-. .+..||.-.|.+||.+||+|..|.
T Consensus 4 eshl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~~ 56 (57)
T COG5570 4 ESHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQM 56 (57)
T ss_pred HHHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4567788888999999987764 467899999999999999998763
No 59
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=94.26 E-value=0.22 Score=45.53 Aligned_cols=54 Identities=28% Similarity=0.472 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHhhHHHHH---------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 23 MEQLRTEAQKLKQSTEDLQE---------------KIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~e---------------e~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+..|.+|-++|+++|+.|+. +.+++..|...|.+|.+.|+..+..|+.||..+.
T Consensus 75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 75 LAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45567777788888888865 3578899999999999999999999999987653
No 60
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=94.25 E-value=0.38 Score=38.32 Aligned_cols=55 Identities=33% Similarity=0.567 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELK------AEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~------~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+-+..|+.+++++++++..|++++...+ .|+.++-++...|+.++.+|+.+|+..
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~ 129 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKY 129 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777765554 456667777888888888888888754
No 61
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.23 E-value=0.36 Score=44.88 Aligned_cols=66 Identities=27% Similarity=0.431 Sum_probs=58.0
Q ss_pred CCchhhhH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 9 KTDKATIL---SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 9 K~DKAsIL---~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+..+.++- .+.-+-+.+|+.++++|+.+.+.+.++++.++.+..++.+|....+.+.++|+++++-
T Consensus 313 ~~~~~~~~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l 381 (594)
T PF05667_consen 313 PKEKETEEDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKL 381 (594)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 4667889999999999999999999999999999999999999999999999999886
No 62
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.19 E-value=0.15 Score=44.64 Aligned_cols=42 Identities=26% Similarity=0.375 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
..++.|+.+++.|+..+..|+++.+.++.|.+.|++|...|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (398)
T PTZ00454 22 EKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQ 63 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 446678889999999999999999999998888888766553
No 63
>PF15294 Leu_zip: Leucine zipper
Probab=94.11 E-value=0.19 Score=43.04 Aligned_cols=46 Identities=30% Similarity=0.525 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
=|..|+.+|+++|++|.+.++.+.......-+||..|++++..|+.
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999999999988887
No 64
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.01 E-value=0.62 Score=35.77 Aligned_cols=59 Identities=24% Similarity=0.500 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.+.-..+.+|..|...+...+..++.+...++....++++++...+...+.++..++.
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 141 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKE 141 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666555555555555555555544444444444443
No 65
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=93.99 E-value=0.56 Score=35.15 Aligned_cols=49 Identities=27% Similarity=0.399 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
-|.+|-.++..|-++.+.|...+.+|-.|-.+||-||..|+.-++++++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3555666666666666666666666666666666777777666666533
No 66
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=93.93 E-value=0.52 Score=32.91 Aligned_cols=52 Identities=25% Similarity=0.363 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHHhHHHHHHHHHHHHh
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKN--------ELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKn--------ELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|++.-.++.+|+.+|=+|.=+|..|...-+ ++..|+..||.+++.|..+++.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~ 61 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQE 61 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888888888888777776665554 3455555666666666655554
No 67
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=93.90 E-value=0.4 Score=43.86 Aligned_cols=59 Identities=17% Similarity=0.342 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+...-|.+-+..+.+|+++.+.|+.|.+.++..+.+++.+...|++|+.+|+.|++++.
T Consensus 66 VnqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 66 VRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456666677777888888888877787888888888888899999999999987753
No 68
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=93.86 E-value=0.48 Score=38.89 Aligned_cols=57 Identities=23% Similarity=0.420 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
..++-|..+-.+|-+.+..++.+.+.|.++.-.|++||..|..+.+.++.+.+.++.
T Consensus 74 ~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~ 130 (193)
T PF14662_consen 74 TLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELAT 130 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHH
Confidence 344444444445555555555666667777777777777777777777777666543
No 69
>smart00338 BRLZ basic region leucin zipper.
Probab=93.74 E-value=0.4 Score=31.48 Aligned_cols=38 Identities=34% Similarity=0.630 Sum_probs=21.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 35 QSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 35 ~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
.....|+.++..|+.|..+|+.+...|+.++..|.+++
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555555555544
No 70
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.69 E-value=0.45 Score=39.93 Aligned_cols=54 Identities=30% Similarity=0.427 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.+++|..|++.++....+|+.++..|..+..+|+++...|+..+.+++..+-.
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e 142 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAE 142 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888888888888888888888877776655
No 71
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=93.66 E-value=0.51 Score=36.75 Aligned_cols=49 Identities=29% Similarity=0.494 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 26 LRTEAQKLKQSTEDLQEKIKEL-KAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L-~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+..+...++.....|..++..+ +.+.++||.+...|+.|+++|+++|+.
T Consensus 49 ~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ 98 (177)
T PF07798_consen 49 LENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELRE 98 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444322 344556666666666666666665554
No 72
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=93.65 E-value=0.64 Score=34.46 Aligned_cols=57 Identities=32% Similarity=0.501 Sum_probs=38.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032660 10 TDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 10 ~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
|||-.|. .-|.+|-.++..|-++.+.|...+.+|-.|=.+||-|+..|+.-+.++++
T Consensus 1 Mdk~~l~----~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 1 MDKKELF----DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred CchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4554443 34566666777777777777777777777777777777777777766665
No 73
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=93.63 E-value=0.96 Score=30.56 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
..+.++..+..+..+++.++.+++.|-++|+.|...|.+ .++++.--+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~-~~rIe~~Ar 68 (85)
T TIGR02209 21 SAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR-HERIEKIAK 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHH
Confidence 344555566666666666666666666666666666654 455555433
No 74
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=93.62 E-value=0.27 Score=35.97 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
..+|+.|++.++++|+.|+.+...|. +|...|+.+.+=+|.+-+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~-------~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLF-------AEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhCcHHHHHHHHHH
Confidence 44555555555555555555554444 4444454444556655554
No 75
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=93.60 E-value=0.48 Score=39.56 Aligned_cols=61 Identities=18% Similarity=0.401 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 032660 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
++.-.+|-=+.+|=.+.|..|..|+++.+.+..+..+||.|...|++|-.+|=..++-+.+
T Consensus 75 ~~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqS 135 (248)
T PF08172_consen 75 GGDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQS 135 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666778888999999999999999999999999999999999999999999999888744
No 76
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.42 E-value=0.49 Score=44.18 Aligned_cols=55 Identities=25% Similarity=0.480 Sum_probs=36.5
Q ss_pred HHHHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 21 RMMEQLRTE----AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 21 r~lkqLr~e----~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
..|+||+.| ++.||.++..+++++..+..+.+.|++||...-..+..|+.+|..+
T Consensus 4 e~l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eL 62 (617)
T PF15070_consen 4 ESLKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSEL 62 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666655 4566677777777777777777777777776666666666666554
No 77
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=93.35 E-value=0.28 Score=40.90 Aligned_cols=48 Identities=25% Similarity=0.354 Sum_probs=41.6
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032660 8 PKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELR 55 (136)
Q Consensus 8 ~K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELr 55 (136)
.|..||.||--+|.|+.+|..++.+-.++...|+.+.-.|+.=||+-.
T Consensus 99 ~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk~~YE 146 (229)
T KOG1319|consen 99 QKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIIKVNYE 146 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999998888888888877777777654
No 78
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.35 E-value=0.44 Score=41.53 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+|-.++++++..++.|+.+.+.+.-||.|+..|....+.-.+||++||..+
T Consensus 130 ~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 130 DLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666999999999999999999999999999999999999999999874
No 79
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.32 E-value=1.1 Score=36.75 Aligned_cols=54 Identities=22% Similarity=0.481 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELK----AEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~----~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
.-+-+..|+.++..|+..|..|+..+.+|. .+...+......|++++..+..++
T Consensus 221 ~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 221 LRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 334455555666666666666666655443 233333333344444444444333
No 80
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.28 E-value=0.7 Score=40.45 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
|.+.++-.++|++++++|+..+..+.++++.|..+.+++++++..+..++.+.+.
T Consensus 353 i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~ 407 (562)
T PHA02562 353 LITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGI 407 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777777777777777777777777777666543
No 81
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=93.24 E-value=0.43 Score=40.61 Aligned_cols=60 Identities=15% Similarity=0.387 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-cCCCCCCC
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM-SAPSGFLP 83 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~-~~~p~f~p 83 (136)
+.|+.-++.+..+...++..+..|+.+...|.....+-|+|.||.+..|+++ ++.|-||-
T Consensus 165 ~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmd 225 (267)
T PF10234_consen 165 KALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMD 225 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 3344445555555555566666666666666666667777777777778876 45676664
No 82
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=93.23 E-value=0.39 Score=40.33 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=15.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHH----HHHHHHHHhHH
Q 032660 32 KLKQSTEDLQEKIKELKAEKN----ELRDEKQRLKA 63 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKn----ELrdEk~~Lk~ 63 (136)
.|++||+.|++++..|..+.+ ||+.||.+|+.
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444433322 35555555544
No 83
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=93.21 E-value=0.81 Score=40.00 Aligned_cols=45 Identities=16% Similarity=0.311 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032660 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~ 59 (136)
+++-++..+.+|..+++.|..+|+.|+++.+.+..+..++-.+|.
T Consensus 131 l~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~ 175 (342)
T PF06632_consen 131 LFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKE 175 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777777777766666555555555554
No 84
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.16 E-value=1.2 Score=36.21 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
|..++..|+.+.+.|+..++.++..-+.++.+...|+.+++.++
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444443
No 85
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=93.15 E-value=0.36 Score=44.17 Aligned_cols=62 Identities=23% Similarity=0.416 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 13 ATILSDVVRMMEQLRTEAQKLKQ------------STEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 13 AsIL~DAir~lkqLr~e~~~Lk~------------~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+-+.++++.|++...+.+.+.. -.....++..++..|-++|.+++..|+++++++++++..
T Consensus 52 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~~~ 125 (646)
T PRK05771 52 LTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIER 125 (646)
T ss_pred HHHHHHHHHHHHHhccccccchhhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777666555332111 011223344444455555555555555555555555444
No 86
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=93.06 E-value=0.87 Score=30.77 Aligned_cols=36 Identities=33% Similarity=0.442 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
.-+.+++.++++++.+++.++++...|+.|.+.|.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345577777777777777777777777777777765
No 87
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=93.04 E-value=0.79 Score=35.68 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032660 40 LQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 40 L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
+.+|++.|+.|-.+...|...||.+.++|+.
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444443
No 88
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.02 E-value=0.68 Score=39.75 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+++||.++.++..+++....++.++..+.+++++.....+.+|..++.++..
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ 257 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555544444444444444444444
No 89
>PF14282 FlxA: FlxA-like protein
Probab=92.99 E-value=0.38 Score=35.12 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEK----IKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee----~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
...+++|..+++.|.+.+..|.+. .+.-+.....|..+...|.++|-.|+.+.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777776666662 13333334444555555555555554443
No 90
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=92.94 E-value=0.41 Score=39.04 Aligned_cols=42 Identities=29% Similarity=0.528 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
+.++-..+|++|.++||++|+.|+.+...+ ++|++|+.+|+.
T Consensus 66 ~~~~~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~~ 107 (276)
T PRK13922 66 ESLASLFDLREENEELKKELLELESRLQEL----EQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 344556666777777777777766666544 244455555544
No 91
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.90 E-value=1.2 Score=35.83 Aligned_cols=60 Identities=20% Similarity=0.388 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|..+=+.+++.|..|+..+|..-........++..|-..|.+-...+..|.++|+.+++.
T Consensus 21 IT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~ 80 (201)
T PF13851_consen 21 ITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKN 80 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 556667778888888877777666666666666666666666666666666666666554
No 92
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=92.69 E-value=1.1 Score=34.89 Aligned_cols=27 Identities=22% Similarity=0.487 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 47 LKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 47 L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+..||.+.|+|...++..+..++..+.
T Consensus 111 ~n~eK~~~r~e~~~~~~ki~e~~~ki~ 137 (177)
T PF07798_consen 111 LNLEKGRIREEQAKQELKIQELNNKID 137 (177)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566677776666666655554443
No 93
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=92.67 E-value=1.4 Score=30.36 Aligned_cols=53 Identities=26% Similarity=0.442 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|++|-.++..|=..+..|+++...|..+-..++.|...|....+---+.+.+|
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666555555555554
No 94
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.59 E-value=1.5 Score=34.94 Aligned_cols=52 Identities=23% Similarity=0.413 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
...-+.+++.++.+++..+..|++++..++.+..++|++...++..++....
T Consensus 54 ~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 54 QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666666666655555555555554444444444333
No 95
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.58 E-value=1.8 Score=32.50 Aligned_cols=54 Identities=26% Similarity=0.506 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
.|-+|.+|....++-....+.|.++++.+..+...|.-...+|+.+.+.++.++
T Consensus 36 vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~ 89 (151)
T PF11559_consen 36 VINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELEREL 89 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555554444444443
No 96
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=92.55 E-value=0.84 Score=41.85 Aligned_cols=60 Identities=8% Similarity=0.158 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+-|.+.=.-.++|..++++||.+.+.+.....++..+.++|.+|+..|+.+.+.+-.+.-
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~ 128 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPV 128 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 346777778889999999998888877788888888888888999999888865555533
No 97
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=92.54 E-value=0.95 Score=33.26 Aligned_cols=41 Identities=27% Similarity=0.483 Sum_probs=25.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 32 KLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
.|-.++..|+++++.+..+..+|+.+...++.++..|..++
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555666666666666666666666666666666665554
No 98
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=92.54 E-value=0.71 Score=40.78 Aligned_cols=53 Identities=25% Similarity=0.356 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHh
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEK---NELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EK---nELrdEk~~Lk~eke~Le~qlk~ 74 (136)
-.++|+.+++.|+.+...+..+++.++..+ .+|.+|-..|+.++..|+.+++.
T Consensus 36 ~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 91 (425)
T PRK05431 36 ERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDE 91 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888887777777776533322 13444444444444444444433
No 99
>PHA03011 hypothetical protein; Provisional
Probab=92.45 E-value=1.4 Score=33.57 Aligned_cols=59 Identities=19% Similarity=0.382 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+..-+..|..|+.+-+.|-++...+..+++.+..=..+--||---|++|++||..++--
T Consensus 59 ~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 59 INAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 44567889999999999999999999999999988888888999999999999888754
No 100
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=92.34 E-value=1.7 Score=32.54 Aligned_cols=47 Identities=26% Similarity=0.536 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
+..|++++.+|+..++.|++++.++..|...+..+-..|+.++..++
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~ 107 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLE 107 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444444444333333333333333
No 101
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=92.33 E-value=1.6 Score=29.55 Aligned_cols=46 Identities=20% Similarity=0.453 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
|.+|-++++.|......|.+++..|+.+-....+|-.+-..-++++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~ 50 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNI 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677777777777777777777777766665555555544444433
No 102
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.21 E-value=1.1 Score=36.60 Aligned_cols=35 Identities=34% Similarity=0.550 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 38 EDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
..+.+++..++...+.|+.+...|++.+..|+.++
T Consensus 212 ~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 212 ESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 33333333444444444444344444444444333
No 103
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.20 E-value=0.59 Score=40.34 Aligned_cols=49 Identities=24% Similarity=0.535 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCC
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPS 79 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p 79 (136)
..|+.+..+++..++.|++..++|..+++. ++.++++++.+++.+..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 52 (389)
T PRK03992 4 EALEERNSELEEQIRQLELKLRDLEAENEK-------LERELERLKSELEKLKSPP 52 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCC
Confidence 345555555555555555555555555444 4455555555555555444
No 104
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=92.18 E-value=1 Score=31.83 Aligned_cols=58 Identities=29% Similarity=0.532 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQE---KIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~e---e~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
..+.-+.+||++-+.+.+++..+.. +..+|..|-.++.++...|+.+...++.++..+
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888887777765 578888888888888888888888888888874
No 105
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=92.16 E-value=1.7 Score=32.44 Aligned_cols=60 Identities=25% Similarity=0.413 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
+-...+.+|+.+..+|.+.|-.++.++..++.+..++-++-..|+.+-..++++++.++.
T Consensus 31 ~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l~~ 90 (150)
T PF07200_consen 31 ELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDELSS 90 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334445555666666666666666666777777777777777888888888888877643
No 106
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.16 E-value=1.2 Score=38.35 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
=|+.+-.++...+...+.++++.+.++...++..++|+.+..+|..++.
T Consensus 212 ~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 212 KLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444443333
No 107
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=92.15 E-value=0.79 Score=42.88 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
.|..+|..+...++..+..|.++++.|+.||+........|+..+.+|.+|+....
T Consensus 15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~ 70 (617)
T PF15070_consen 15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP 70 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 58899999999999999999999999999999999999999999999999888743
No 108
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=92.10 E-value=1.3 Score=37.33 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 032660 38 EDLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~ 59 (136)
..|.+|.+.|+.|..+|+.+.+
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444433333
No 109
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=91.99 E-value=1.1 Score=33.37 Aligned_cols=53 Identities=28% Similarity=0.417 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+++++..++.|..+|..|-+.+-++..+-+++|++-..+..+...|+.++...
T Consensus 29 ~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k 81 (150)
T PF07200_consen 29 VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEK 81 (150)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888999999988888888888888888888888888888887764
No 110
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=91.89 E-value=0.82 Score=38.84 Aligned_cols=19 Identities=11% Similarity=0.335 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQE 42 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~e 42 (136)
++||.+.+.++.+..+|.+
T Consensus 2 ~el~~~~~~~~~~~r~l~~ 20 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLD 20 (378)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4566666666665555554
No 111
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=91.86 E-value=0.57 Score=30.05 Aligned_cols=30 Identities=30% Similarity=0.574 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032660 41 QEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 41 ~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
.....+|..+..+|..|+..|+.++..|+.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555666666666665554
No 112
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.83 E-value=1.1 Score=41.91 Aligned_cols=49 Identities=31% Similarity=0.367 Sum_probs=31.9
Q ss_pred CchhhhHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 032660 10 TDKATILSDVV----RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEK 58 (136)
Q Consensus 10 ~DKAsIL~DAi----r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk 58 (136)
|+|+.|+.+-+ .=+.++..|.-+|-..+.+++++++++..|||||-+=.
T Consensus 211 N~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~L 263 (596)
T KOG4360|consen 211 NTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHL 263 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 56666664433 23445566666777777777788888888888775433
No 113
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.82 E-value=2 Score=34.19 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhhHHH
Q 032660 26 LRTEAQKLKQSTEDL 40 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L 40 (136)
|+.++++++++++..
T Consensus 75 l~~~i~~~~~~i~~~ 89 (302)
T PF10186_consen 75 LRERIERLRKRIEQK 89 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 114
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=91.81 E-value=2.4 Score=28.86 Aligned_cols=51 Identities=27% Similarity=0.452 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
=||-=..+..|+.+.|..|-.++...++-...-.+|..|...|+.+++.+.
T Consensus 9 EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 9 EIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355556678888888888888888888888777777777777777777654
No 115
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.76 E-value=1.8 Score=36.91 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=6.1
Q ss_pred HhHHHHHHHHHHHHh
Q 032660 60 RLKADKEKLEQQVKA 74 (136)
Q Consensus 60 ~Lk~eke~Le~qlk~ 74 (136)
.|+.+++...++|..
T Consensus 117 sl~~q~~~~~~~L~~ 131 (314)
T PF04111_consen 117 SLKNQYEYASNQLDR 131 (314)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 116
>PRK09039 hypothetical protein; Validated
Probab=91.72 E-value=1.6 Score=37.73 Aligned_cols=54 Identities=13% Similarity=0.232 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
....+.+.++..|+.+++.|+..+..|..+.++++++....+..++.|+..|..
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666778888888888888888888888888888888888888877766
No 117
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=91.70 E-value=0.19 Score=34.74 Aligned_cols=49 Identities=22% Similarity=0.364 Sum_probs=30.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 032660 10 TDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEK 58 (136)
Q Consensus 10 ~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk 58 (136)
-|++-|..|.-.++..|..+++.++++...|....+++..+.+++++..
T Consensus 51 vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 51 VGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp ETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666666666666666666666666666666666655543
No 118
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=91.66 E-value=1.4 Score=41.05 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=2.9
Q ss_pred HHHHHhhH
Q 032660 31 QKLKQSTE 38 (136)
Q Consensus 31 ~~Lk~~n~ 38 (136)
..|+.++.
T Consensus 160 ~~Le~e~~ 167 (546)
T PF07888_consen 160 EQLEEEVE 167 (546)
T ss_pred HHHHHHHH
Confidence 33333333
No 119
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=91.58 E-value=0.66 Score=41.82 Aligned_cols=51 Identities=27% Similarity=0.419 Sum_probs=37.3
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032660 9 KTDKATILSDVVRMMEQLRTEAQK---LKQSTEDLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 9 K~DKAsIL~DAir~lkqLr~e~~~---Lk~~n~~L~ee~~~L~~EKnELrdEk~ 59 (136)
|.+|.+||.-++.|+..|+..-++ +......|+..++.|...+.||..+..
T Consensus 268 ~~nKgtILk~s~dYIr~Lqq~~q~~~E~~~rqk~le~~n~~L~~rieeLk~~~~ 321 (411)
T KOG1318|consen 268 KSNKGTILKASCDYIRELQQTLQRARELENRQKKLESTNQELALRIEELKSEAG 321 (411)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHHH
Confidence 556999998888888888776664 444556677777777777777776655
No 120
>PRK11415 hypothetical protein; Provisional
Probab=91.56 E-value=1.1 Score=30.90 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHHHH
Q 032660 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKA--------EKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~--------EKnELrdEk~~Lk~eke~Le~ 70 (136)
.|.|.-|++=-....+|.+++..|..+|+.+.. +..+|+-+|.+||.+|.++=.
T Consensus 6 ~d~I~~Lk~~D~~F~~L~~~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~~L~ 67 (74)
T PRK11415 6 RDLISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLKILQ 67 (74)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHHHHHHH
Confidence 356666766667777777777777777765543 566677777777766665543
No 121
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=91.54 E-value=1.1 Score=32.01 Aligned_cols=49 Identities=10% Similarity=0.239 Sum_probs=26.3
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032660 9 KTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 9 K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
..|.+-|..|--.++..|..+++.+..+...|..+++++..+.++|+.+
T Consensus 51 ~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 51 LVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555555555555444443
No 122
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=91.48 E-value=0.86 Score=39.32 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
...++.|+.+++.|+..+..|..+.+.++.+..+|+++...|+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 7 EERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34567788999999999999999999999999999998877765
No 123
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=91.44 E-value=0.96 Score=33.11 Aligned_cols=34 Identities=12% Similarity=0.250 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032660 37 TEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 37 n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
+..++.++.+++.|..+|++++..|+.|+++|++
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4555666666666666667777777777777765
No 124
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=91.35 E-value=1.6 Score=38.93 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=44.7
Q ss_pred chhhhHHHHHHHHHHHHH---------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 11 DKATILSDVVRMMEQLRT---------------EAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 11 DKAsIL~DAir~lkqLr~---------------e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|+.+.+-.-+.+|..++. .+.++.+-.....+++.++..++.+|..+...|+.++++|+++|..+
T Consensus 92 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 92 DRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555666666653 23456666666666777777777888888888888888888887775
Q ss_pred c
Q 032660 76 S 76 (136)
Q Consensus 76 ~ 76 (136)
+
T Consensus 172 ~ 172 (525)
T TIGR02231 172 L 172 (525)
T ss_pred c
Confidence 4
No 125
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=91.34 E-value=1.5 Score=34.96 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
.+|..++..|+.++..|+.++.+|+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~ 147 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELK 147 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555444444443
No 126
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=91.25 E-value=0.78 Score=35.23 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=23.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032660 34 KQSTEDLQEKIKELKAEKNELRDEKQRLKADKE 66 (136)
Q Consensus 34 k~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke 66 (136)
++|.+.|.+.|++|...-+.|+.||.-||+-..
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 455666667777777777788888888886543
No 127
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.23 E-value=1.2 Score=36.81 Aligned_cols=58 Identities=22% Similarity=0.433 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.++-....+|+.+..+..++...|..++.++..+...|++++..-..|.++|+.++..
T Consensus 57 ~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ 114 (246)
T PF00769_consen 57 QEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEE 114 (246)
T ss_dssp HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888888888888888888888888888888888888888888887766
No 128
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=91.15 E-value=2.4 Score=30.91 Aligned_cols=57 Identities=21% Similarity=0.424 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+..+-|.+++.+.-+++..|..|-.++.+|+.+..+-++ ...+..++++++.+++.
T Consensus 13 ~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~ 69 (106)
T PF05837_consen 13 RSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKK 69 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555556555555554444 44566788888887776
No 129
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=91.08 E-value=1.6 Score=38.55 Aligned_cols=52 Identities=25% Similarity=0.424 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAE----KNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~E----KnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.++|+.|++.|+.+...+..+++.++.. ..+|+++-..|+.++..|+.+++.
T Consensus 39 ~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 94 (418)
T TIGR00414 39 RKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKA 94 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888777664322 346666666666666666666555
No 130
>PF14282 FlxA: FlxA-like protein
Probab=90.94 E-value=1.6 Score=31.85 Aligned_cols=49 Identities=22% Similarity=0.464 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHhc
Q 032660 27 RTEAQKLKQSTEDLQEKIKELKAEKN----ELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKn----ELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
-.+|+.|+..+..|++++++|...++ +-+.....|..+|.-|+.||..+
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888887433 33444557888888888888875
No 131
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=90.94 E-value=1.5 Score=34.12 Aligned_cols=47 Identities=28% Similarity=0.513 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+.++..|+++...+..+.+.|..|..-||.||-.|..+-.+.+.++.
T Consensus 51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~ 97 (140)
T PF10473_consen 51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVS 97 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555544444444444433
No 132
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.93 E-value=1.1 Score=38.86 Aligned_cols=54 Identities=24% Similarity=0.516 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
..=|+.++.+++.|++....+.+++++|+.++|++.+.-+.|-.+..++-....
T Consensus 47 n~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 47 NAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566677777777777777777777777777776666665555555544433
No 133
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=90.92 E-value=1 Score=37.53 Aligned_cols=37 Identities=35% Similarity=0.519 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 36 STEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+.++++++...|+..-.++.+|-.+|..|-.+|+.|+
T Consensus 173 ~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 173 KLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444443
No 134
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=90.75 E-value=1.8 Score=41.25 Aligned_cols=48 Identities=27% Similarity=0.506 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
++|.+|..+-.++++..+.+++..++++..+++|++++..|+.+++++
T Consensus 520 ~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~ 567 (782)
T PRK00409 520 ELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL 567 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555444433
No 135
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.75 E-value=2.2 Score=31.81 Aligned_cols=49 Identities=24% Similarity=0.432 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKI----KELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~----~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
+.+++.++..|+.+..+..... .....+|..|..|+..++.-++.|..|
T Consensus 68 ~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 68 LQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555544443333332 234445555555555555555555443
No 136
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.70 E-value=1.8 Score=39.21 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
-..+|..++++|+.++.++..++.+...+.++++.....+...++.|+.|-
T Consensus 60 ~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 60 QRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344555555566666666666665555666666666666666666666554
No 137
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.65 E-value=1.2 Score=42.28 Aligned_cols=44 Identities=20% Similarity=0.431 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~ 59 (136)
++.-.+-++.|+..+++|+.+|..|+.++.+++.|..+|+++..
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~ 460 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELE 460 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777777777777777777666666666655544
No 138
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=90.60 E-value=1.6 Score=31.77 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 43 KIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 43 e~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
+.+.|..+..|++-+-..+.+.+.-++
T Consensus 66 dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 66 DVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 139
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=90.58 E-value=0.43 Score=32.70 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032660 36 STEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
+.+.|.+.|.+|...-++|+.||+.||+
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444445555566666654
No 140
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.52 E-value=2 Score=32.91 Aligned_cols=27 Identities=33% Similarity=0.545 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 48 KAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 48 ~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
..|.+.|...+..|..++++++.+|+.
T Consensus 34 E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 34 EQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555555555555555554
No 141
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=90.49 E-value=2.4 Score=34.39 Aligned_cols=50 Identities=22% Similarity=0.401 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
++.|..-...+..+|..|+.++.+|..|-..|++.+..|+..+..|.++-
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq 200 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQ 200 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677888888888888888888888888888888888777663
No 142
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.48 E-value=2.6 Score=31.87 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
|++-.+.|+.++.++...+.+|.++.+|++.
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 143
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=90.41 E-value=0.37 Score=34.30 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=17.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 52 NELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 52 nELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+||++|+.+||.++.+|+.+|+.+
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~ 26 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQN 26 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777664
No 144
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.41 E-value=3.9 Score=31.31 Aligned_cols=27 Identities=22% Similarity=0.555 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
.+++...+++.++..+..+.++++++.
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555
No 145
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.39 E-value=1.3 Score=42.02 Aligned_cols=60 Identities=25% Similarity=0.432 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----------HHhHHHHHHHHHHHH
Q 032660 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEK----------QRLKADKEKLEQQVK 73 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk----------~~Lk~eke~Le~qlk 73 (136)
.-+.+--+.|+.|+.|++.|+.+++.|+.++..|+.+..+++.+- ..+..+|++|+..|+
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345555677888888888888888888888888888777776542 235555555555443
No 146
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=90.38 E-value=1.4 Score=40.95 Aligned_cols=35 Identities=31% Similarity=0.515 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 41 QEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 41 ~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+.++..++..++-|.||+.+||.|..+|..+|+.+
T Consensus 154 eAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 154 EAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33456666777777777777777777777777664
No 147
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=90.36 E-value=1.8 Score=28.99 Aligned_cols=56 Identities=11% Similarity=0.373 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELK-AEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~-~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+--+.|..+...+++..+-...++-|++.+- .+|+.+.......+++..+|+.+|+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445666666667777777777777777665 7888888888888888888888876
No 148
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=90.28 E-value=1.9 Score=37.68 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
++-.+-..+.+|.++|..|+.+...|+.|-|++..+.-.+-.+|+.+|.+
T Consensus 131 l~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~ 180 (342)
T PF06632_consen 131 LFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEED 180 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555555555555555555555555555544
No 149
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=90.13 E-value=2.3 Score=37.40 Aligned_cols=55 Identities=31% Similarity=0.556 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH--------------------HHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELK--------------------AEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~--------------------~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+-+++|+.++++++++.+.|+..+..++ ..+.+|.++...|+.++..|+.+++.
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44456666666666666666655554444 34445555555555555555555554
No 150
>PF14645 Chibby: Chibby family
Probab=89.99 E-value=1.4 Score=33.10 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
...+.++|+++|..|+||+++|+.+..=|-|=.+.-.+|-.-+|.+|
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34678889999999999999999998888888887777777777665
No 151
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.96 E-value=2 Score=42.98 Aligned_cols=54 Identities=28% Similarity=0.553 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+++|..|+++|...+.+|.+++++++.+-.+-++|+...+.+|..|...++..+
T Consensus 403 ~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~ 456 (1074)
T KOG0250|consen 403 LEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENIS 456 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555566666666666666666654
No 152
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=89.93 E-value=2.6 Score=36.99 Aligned_cols=66 Identities=23% Similarity=0.391 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------------HHHHHHHHHhccCC
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKAD--------------------KEKLEQQVKAMSAP 78 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~e--------------------ke~Le~qlk~~~~~ 78 (136)
-++-.+.++.+..+.++.+..+.+.+.+++.|.|++-+|....|.+ +-+|.++++.|++.
T Consensus 271 l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvr 350 (359)
T PF10498_consen 271 LIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVR 350 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444555555555555555555556666666555555444433 34556666667666
Q ss_pred CCCCCC
Q 032660 79 SGFLPH 84 (136)
Q Consensus 79 p~f~ph 84 (136)
-|++-|
T Consensus 351 IGVleh 356 (359)
T PF10498_consen 351 IGVLEH 356 (359)
T ss_pred hheehh
Confidence 666554
No 153
>PLN02678 seryl-tRNA synthetase
Probab=89.93 E-value=3.8 Score=36.97 Aligned_cols=52 Identities=25% Similarity=0.374 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELK---AEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~---~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.++|+.+++.|+.+...+..++..++ .+..+|.+|-..|+.++..|+.+++.
T Consensus 42 ~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~ 96 (448)
T PLN02678 42 WRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQE 96 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777665433 12234444444455555554444433
No 154
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=89.88 E-value=4.3 Score=32.61 Aligned_cols=43 Identities=26% Similarity=0.434 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032660 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
.|..+-.-++.+..++..|+-+++.|+.....|..|++||.+.
T Consensus 87 ~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 87 SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667788888888889999999999999999998888754
No 155
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=89.58 E-value=2.7 Score=36.76 Aligned_cols=43 Identities=28% Similarity=0.394 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032660 13 ATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELR 55 (136)
Q Consensus 13 AsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELr 55 (136)
+.+|+|+-.-.+.|..|+..|+.....++.+++.|..-.+..|
T Consensus 71 a~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r 113 (319)
T PF09789_consen 71 AQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQR 113 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhh
Confidence 4667788777777777777777777777777766665444443
No 156
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=89.49 E-value=0.2 Score=36.06 Aligned_cols=47 Identities=32% Similarity=0.574 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADK 65 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ek 65 (136)
-=.+|.+|..++..|..+|..|..+++.|..+-.+++++...|+..+
T Consensus 23 VD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 23 VDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 34678888888888888888888777777777777766666655544
No 157
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=89.41 E-value=1.1 Score=32.73 Aligned_cols=43 Identities=28% Similarity=0.469 Sum_probs=31.2
Q ss_pred HHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032660 29 EAQKLKQSTED-LQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 29 e~~~Lk~~n~~-L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
.|.-||.+++. .+..++.|..+++.|.+|+..|+.+++.-..+
T Consensus 35 KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 35 KVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777754 67778888888888888888887766654443
No 158
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=89.39 E-value=2.8 Score=37.97 Aligned_cols=58 Identities=21% Similarity=0.410 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.++-.-|.....++..|+...+.|+.++...+.|.+.|++.-....+.+.+|+.+|..
T Consensus 291 e~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~ 348 (522)
T PF05701_consen 291 EEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNK 348 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Confidence 3444445555566667777777777777777777777777665555555555555444
No 159
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.38 E-value=4.2 Score=27.97 Aligned_cols=42 Identities=21% Similarity=0.495 Sum_probs=27.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 28 TEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
.+...|..++......+...-.|.++|++|+..|+.|.+.+.
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555555555567777777788888888877766554
No 160
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=89.32 E-value=3 Score=29.05 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
.+.+...+..++..++.+...|..|.+.|+=|.+.|.+
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 44445555555555555555555555555555555443
No 161
>PRK04325 hypothetical protein; Provisional
Probab=89.32 E-value=5.5 Score=27.54 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
..+...+.+|....+-.+..|.+|...--+.+.+...|+.+...|-.+++.+.
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555677777777777777777777777777777777777777777777764
No 162
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=89.31 E-value=2.6 Score=31.88 Aligned_cols=56 Identities=23% Similarity=0.424 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHH--------HHHHHHHHHhHHHHHHHHHHHH
Q 032660 18 DVVRMMEQLRTEAQKLKQSTE-DLQEKIKELKAEK--------NELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~-~L~ee~~~L~~EK--------nELrdEk~~Lk~eke~Le~qlk 73 (136)
+|-++|.+|..|++.-+.+.+ +++..++.+...- .+|+++..+|+.+...||++++
T Consensus 43 Eak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 43 EAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577899999888884443322 2333444444333 5788888888888888888776
No 163
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=89.30 E-value=3.3 Score=36.40 Aligned_cols=33 Identities=24% Similarity=0.537 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
.+|+.+.++|+++...+++++.+++.....|..
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 567777788888888888888777777655554
No 164
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=89.19 E-value=2.8 Score=30.55 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=14.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032660 28 TEAQKLKQSTEDLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~ 59 (136)
.++.+|..++..|..++..|+.+.+--|+||.
T Consensus 49 k~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 49 KKVDELENENKALKRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 165
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=89.14 E-value=1.7 Score=27.82 Aligned_cols=30 Identities=37% Similarity=0.644 Sum_probs=15.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032660 34 KQSTEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 34 k~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
|.....|+.++..|+.|...|+.+...|+.
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555555555555544
No 166
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=89.11 E-value=4 Score=27.16 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=13.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHhc
Q 032660 54 LRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 54 LrdEk~~Lk~eke~Le~qlk~~ 75 (136)
-|+....++.++++|+..|..|
T Consensus 44 er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 44 EREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556777777777777654
No 167
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=89.10 E-value=2.9 Score=39.80 Aligned_cols=10 Identities=10% Similarity=0.225 Sum_probs=4.4
Q ss_pred hHHHHHHHHH
Q 032660 15 ILSDVVRMME 24 (136)
Q Consensus 15 IL~DAir~lk 24 (136)
||..|-+++.
T Consensus 498 ii~~A~~~~~ 507 (771)
T TIGR01069 498 IIEQAKTFYG 507 (771)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 168
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=89.10 E-value=3.6 Score=32.78 Aligned_cols=47 Identities=30% Similarity=0.459 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHhHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQ------EKIKELKAEKNELRDEKQRLKADKE 66 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~------ee~~~L~~EKnELrdEk~~Lk~eke 66 (136)
..=+.+++.++..|+++++.+. ++...+-.+.++|+.+...|+.+.+
T Consensus 75 ~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 75 QKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443 2234445555555555555555544
No 169
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=89.04 E-value=2.5 Score=31.22 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
+..+.+|..+++.++++++.|..+...|+.|-+.|+|+
T Consensus 49 ~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 49 AADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445555555555555555555555555555555554
No 170
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=88.96 E-value=2.7 Score=33.80 Aligned_cols=19 Identities=37% Similarity=0.548 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 032660 38 EDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrd 56 (136)
..+.+++.+|+...-||++
T Consensus 127 ~~~e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 127 KELESEIKELEMKILELQR 145 (190)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444
No 171
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=88.89 E-value=3.3 Score=28.84 Aligned_cols=47 Identities=28% Similarity=0.442 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHH
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKA------EKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~------EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+|-.+.+|+++++.+-..|+.+.+ ...-+...|..||.++-+||.|+
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~~~cD~L~iqRmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIATGCDALRIQRMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 445555566666655555555432 23345567788888888998886
No 172
>PRK02119 hypothetical protein; Provisional
Probab=88.84 E-value=6 Score=27.34 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
..+...+.+|....+-.+..+.+|...--+.+.+...|+.+...|-++++.+.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556666666666666666777776666666666777777777777776654
No 173
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=88.79 E-value=2.8 Score=32.60 Aligned_cols=10 Identities=40% Similarity=0.551 Sum_probs=3.9
Q ss_pred HhHHHHHHHH
Q 032660 60 RLKADKEKLE 69 (136)
Q Consensus 60 ~Lk~eke~Le 69 (136)
.|+++|+.|+
T Consensus 55 eLk~~i~~lq 64 (155)
T PF06810_consen 55 ELKKQIEELQ 64 (155)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 174
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.56 E-value=2.9 Score=41.53 Aligned_cols=60 Identities=10% Similarity=0.243 Sum_probs=31.2
Q ss_pred HHHHHHHH------HHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 16 LSDVVRMM------EQLRTEAQKLKQSTE-----DLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 16 L~DAir~l------kqLr~e~~~Lk~~n~-----~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|.|-+.++ +++..++..|..++. .++.+.++|..+.|+|.-+++.+..++.+|+.|+..+
T Consensus 1017 l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l 1087 (1311)
T TIGR00606 1017 LQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHF 1087 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777 455555555554443 2334444444444444444444445555566655553
No 175
>PRK14153 heat shock protein GrpE; Provisional
Probab=88.53 E-value=1.6 Score=35.58 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=34.3
Q ss_pred HHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 28 TEAQKLKQS--TEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 28 ~e~~~Lk~~--n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
.+++.||++ +..+.+++..|+.+..+|++...++.+|.+++....+
T Consensus 24 ~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~ 71 (194)
T PRK14153 24 EEAEELKEEPEDSTADSETEKCREEIESLKEQLFRLAAEFDNFRKRTA 71 (194)
T ss_pred HHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677764 4577778888888888888888888888887765433
No 176
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=88.53 E-value=2 Score=28.98 Aligned_cols=35 Identities=23% Similarity=0.500 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 40 LQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 40 L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|+.++..++..-+-+|.|++.++.+++++++-++.
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555666555554
No 177
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.40 E-value=2.9 Score=34.50 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELR 55 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELr 55 (136)
...|-.+.+.+..+-..|+.+..++..++..|+
T Consensus 35 a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~ 67 (246)
T PF00769_consen 35 AEELEEKLKQAEEEAEELEQKRQEAEEEKQRLE 67 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 178
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=88.21 E-value=0.15 Score=43.13 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=0.0
Q ss_pred cccccCCCCCc
Q 032660 102 KLVPFIGYPGV 112 (136)
Q Consensus 102 k~~p~~~ypg~ 112 (136)
|=+|++..|..
T Consensus 210 kdipip~lppl 220 (243)
T PF08961_consen 210 KDIPIPNLPPL 220 (243)
T ss_dssp -----------
T ss_pred ccCcCCCCCCC
Confidence 33677766543
No 179
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=88.19 E-value=2.2 Score=38.98 Aligned_cols=47 Identities=32% Similarity=0.478 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
.++|..|.+.|+.++..|...+++|..|-.+|-.+...++.+++++.
T Consensus 178 ~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~ 224 (447)
T KOG2751|consen 178 EEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLN 224 (447)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777776666665555555555555544444
No 180
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.18 E-value=6.7 Score=27.08 Aligned_cols=53 Identities=32% Similarity=0.475 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
=-..|..+-.++...+..|+..++++..+.++|......+..+++.|+..++.
T Consensus 20 EGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 20 EGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33566667777777777777777777777777777777778888887776654
No 181
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=88.18 E-value=1.2 Score=37.53 Aligned_cols=40 Identities=25% Similarity=0.503 Sum_probs=18.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCC
Q 032660 33 LKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPS 79 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p 79 (136)
|+..++.|++..+++..|.+ .++.|+++++.+++.+..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 43 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKI-------RLERELERLRSEIERLRSPP 43 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhCCC
Confidence 33344444444444444444 44444444555555544443
No 182
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=88.13 E-value=3.2 Score=34.46 Aligned_cols=53 Identities=13% Similarity=0.269 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
-+.+-||..+++.|+.++..|+-.+.++.-+.+.+.++-..|-.+++++-.++
T Consensus 53 ~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~ 105 (263)
T PRK10803 53 SQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG 105 (263)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566888888888888888888888888888888888888888888776544
No 183
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=88.11 E-value=3.9 Score=38.98 Aligned_cols=48 Identities=29% Similarity=0.420 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
-+++.+|..+..++.+....++...++++.++++|+++...|+.++++
T Consensus 514 ~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~ 561 (771)
T TIGR01069 514 NVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERN 561 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555444444444444444444445555555544444444443
No 184
>PRK03918 chromosome segregation protein; Provisional
Probab=88.09 E-value=4.2 Score=37.72 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 45 KELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 45 ~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
..+..+.++++.+...|+.+++.++.++..
T Consensus 669 ~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~ 698 (880)
T PRK03918 669 LELSRELAGLRAELEELEKRREEIKKTLEK 698 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444443333
No 185
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=88.04 E-value=2.4 Score=32.61 Aligned_cols=33 Identities=30% Similarity=0.423 Sum_probs=22.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 032660 33 LKQSTEDLQEKIKELKAEKNELRDEKQRLKADK 65 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ek 65 (136)
++.++..-..-|-.|+.|+|-|.||+-.|+.|.
T Consensus 87 fe~s~~qsLq~i~~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 87 FESSHLQSLQHIFELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 334443334446778888888888888887764
No 186
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=88.03 E-value=3.5 Score=27.88 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
|...+.+|....+-++..+.+|...--+...+..+|+.++..|..+++.+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555555555555555555555555555555565554
No 187
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=87.99 E-value=2.7 Score=34.71 Aligned_cols=47 Identities=30% Similarity=0.384 Sum_probs=34.5
Q ss_pred chhhhHHHHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032660 11 DKATILSDVVRMME-------QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 11 DKAsIL~DAir~lk-------qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
+|-+++.+--++++ ....||..||+.|.+|+++.++|...++-|-|+
T Consensus 31 ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDdd 84 (195)
T PF10226_consen 31 EKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDD 84 (195)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 45555555555544 455788899999999999999998888877664
No 188
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.96 E-value=4.2 Score=36.35 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
..+.|++++-++.++|.....+|+.=+++|+.++.+|+.+-..|+.++
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ni 269 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNI 269 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 445566666666666666666666666666666666666666655543
No 189
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=87.95 E-value=1.9 Score=28.66 Aligned_cols=45 Identities=24% Similarity=0.309 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
.|+.=..+||++-+.=.-+......+.++|+.||..|+++.++++
T Consensus 5 Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 5 RLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred HHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445566666655555567777888888899999998888765
No 190
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=87.94 E-value=3.5 Score=29.47 Aligned_cols=50 Identities=26% Similarity=0.473 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.++++|..-+.+|......-.+..+.- +++.+|-+.|..+..+|.++|-.
T Consensus 8 ~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~ 57 (89)
T PF13747_consen 8 AALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQ 57 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHh
Confidence 356777777777777665544443322 45555555555555555555443
No 191
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=87.80 E-value=5.6 Score=33.95 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 032660 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
..+-.-|...+.+++++.+....|+.+......|+++|+++....+.-.++
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344445555555555555555555555555555555555544443333333
No 192
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=87.79 E-value=2.1 Score=32.60 Aligned_cols=42 Identities=31% Similarity=0.444 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032660 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
..|+=+|......|......+|.|-=.||.|++.|-.=||+|
T Consensus 62 ItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 62 ITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 334445555666666666666666666666666666666555
No 193
>smart00340 HALZ homeobox associated leucin zipper.
Probab=87.78 E-value=2.2 Score=27.73 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC-CCCCCCC
Q 032660 41 QEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA-PSGFLPH 84 (136)
Q Consensus 41 ~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~-~p~f~ph 84 (136)
+-+..+||.=.+.|-|||.+|+.|. ++|+++.. ||-||++
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~----~eLralk~~~~~~m~~ 44 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEV----QELRALKLSPPLYMQH 44 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcccCCcccccC
No 194
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=87.78 E-value=4.7 Score=27.29 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=32.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 032660 33 LKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
|.+.+..|+..+-++..-..+|-+.-.....+|++|+.+++.|..
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~ 46 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRE 46 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777777777777777777777654
No 195
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.74 E-value=6.7 Score=32.54 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 032660 16 LSDVVRMMEQLRTE 29 (136)
Q Consensus 16 L~DAir~lkqLr~e 29 (136)
|.|...-...|..|
T Consensus 34 L~e~~kE~~~L~~E 47 (230)
T PF10146_consen 34 LEEYRKEMEELLQE 47 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444433
No 196
>PLN02320 seryl-tRNA synthetase
Probab=87.64 E-value=5.6 Score=36.66 Aligned_cols=53 Identities=25% Similarity=0.382 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH---------HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIK---------ELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~---------~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.++|..|++.|+.+...+..+++ +|..|-.+|+++...|+.+...++.++..+
T Consensus 102 ~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 102 MLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666655553 455555666666666666666666666663
No 197
>PRK14160 heat shock protein GrpE; Provisional
Probab=87.56 E-value=2.9 Score=34.49 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=27.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032660 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
+..|++++..|.+++..|+.+..+|++...++.+|.++....
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR 97 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKR 97 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666677777778888877766543
No 198
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=87.55 E-value=4.3 Score=34.61 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.-+...+.+++..+.+...+++++..|+.+.++...|+..|+.+++..+..|..
T Consensus 228 ~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 228 AELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345666677777777777777777777777777777788888777777777765
No 199
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=87.44 E-value=4.1 Score=34.24 Aligned_cols=53 Identities=17% Similarity=0.397 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
...|+.++++...+++....++.+...|+.+...+..|.+.+...+.+++.++
T Consensus 30 ~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 30 RKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544444444444444444444
No 200
>PRK14127 cell division protein GpsB; Provisional
Probab=87.43 E-value=4.1 Score=30.54 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 44 IKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
...|..|..+|++|+.+|+.+++.++.++...
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34445555566666666666666666666643
No 201
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=87.41 E-value=4.2 Score=31.14 Aligned_cols=36 Identities=25% Similarity=0.496 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~ 59 (136)
-.+..++..|..++..+..+|.+|.....-|.++--
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld 52 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELD 52 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433333333333
No 202
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.40 E-value=3.6 Score=40.91 Aligned_cols=55 Identities=18% Similarity=0.273 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
|+..+.-..+|..++.+|+.++..+.+++++++.+...|+.+...+.++.+++..
T Consensus 876 l~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1311)
T TIGR00606 876 IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELIS 930 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 3445666667777777777777777777766666666666666666665555443
No 203
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=87.37 E-value=4 Score=36.09 Aligned_cols=57 Identities=25% Similarity=0.422 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQE---KIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~e---e~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
...-+.+||.|.+++-+++..+.. +..+|+.|-++|+++...|+.+...++.++..+
T Consensus 40 l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 40 LQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678889998888888876432 356799999999999999999999999998884
No 204
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=87.33 E-value=3.5 Score=32.30 Aligned_cols=48 Identities=33% Similarity=0.572 Sum_probs=32.4
Q ss_pred HHHHHHHHHhhHHHHHH-------------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 27 RTEAQKLKQSTEDLQEK-------------IKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee-------------~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|.||=+||..-.+|... -++|..+|++|+.|.-.|+.|.+++..++.+
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da 106 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDA 106 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777766554 3566777777777777777777766666655
No 205
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=87.32 E-value=3.6 Score=28.67 Aligned_cols=33 Identities=24% Similarity=0.489 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 37 TEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 37 n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
+..+..++..++.|.+.|++|+..|+.|+.+|.
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444444444444444444443
No 206
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=87.31 E-value=1.7 Score=36.61 Aligned_cols=40 Identities=28% Similarity=0.442 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKAD 64 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~e 64 (136)
.|+.+++.|++.+..++.+.+.++.|.+++|++...++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (364)
T TIGR01242 3 ELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSP 42 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4667888899999999999999998888888877655543
No 207
>PRK04406 hypothetical protein; Provisional
Probab=87.24 E-value=8 Score=26.95 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
.|...+..|....+-++..|.+|...--+.+.+...|+.+...|-++++.+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566677777777777777777777666677777777777777777777654
No 208
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=87.23 E-value=4.4 Score=30.97 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+-.++..|.+....|..++..||+-.-+|-+||..|.-|-++|...|-
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~ 53 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLG 53 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhC
Confidence 334555555666666666666666666666666666666666655443
No 209
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=87.21 E-value=5.6 Score=34.58 Aligned_cols=58 Identities=28% Similarity=0.537 Sum_probs=23.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 12 KATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 12 KAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
|-.+|-+.+.-+++.|. .|......+.++..+|..+..|+++.-..|+++...|..++
T Consensus 14 K~~~lk~~~~e~~ekR~---El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev 71 (294)
T COG1340 14 KRKQLKEEIEELKEKRD---ELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEV 71 (294)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555442 22333333333333333333344444444444444444333
No 210
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=87.18 E-value=5.7 Score=30.90 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 47 LKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 47 L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
++.|..+|++|....+.|.+.|..|.+.
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 211
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=87.16 E-value=6.1 Score=31.81 Aligned_cols=47 Identities=28% Similarity=0.445 Sum_probs=20.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 28 TEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.++.+|+.....|++....++.+|.+.-.|..+|+++.+.|++++..
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444433333334444444455555555555544443
No 212
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=87.13 E-value=6.1 Score=31.46 Aligned_cols=27 Identities=48% Similarity=0.642 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032660 40 LQEKIKELKAEKNELRDEKQRLKADKE 66 (136)
Q Consensus 40 L~ee~~~L~~EKnELrdEk~~Lk~eke 66 (136)
+..++..|+.|+++|+.+...|+...+
T Consensus 125 l~~~i~~L~~e~~~L~~~~~~l~~~~e 151 (189)
T PF10211_consen 125 LEEEIEELEEEKEELEKQVQELKNKCE 151 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 213
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=87.10 E-value=5.5 Score=36.59 Aligned_cols=20 Identities=10% Similarity=0.302 Sum_probs=8.4
Q ss_pred HHHHHhHHHHHHHHHHHHhc
Q 032660 56 DEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 56 dEk~~Lk~eke~Le~qlk~~ 75 (136)
.++..++.+..+.+.+++.+
T Consensus 269 ~ei~~le~e~~e~~~~l~~l 288 (650)
T TIGR03185 269 RQLKEIEAARKANRAQLREL 288 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 214
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=87.06 E-value=6.9 Score=26.43 Aligned_cols=48 Identities=21% Similarity=0.404 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+++.+|......|..++..|..+-|-||.+-...|.|-.|-++.|--
T Consensus 2 ~akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 2 NAKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357888999999999999999999999999999999888877766643
No 215
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.97 E-value=4.3 Score=40.06 Aligned_cols=62 Identities=26% Similarity=0.368 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
|..+=--+++.|..+++.||..+..|+-++++|+.|-.++-.+++.|+.+-+.|+.||.-.+
T Consensus 658 ~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~ 719 (970)
T KOG0946|consen 658 IQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIIS 719 (970)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44444455666677777777777777777888887777777888888888888888887543
No 216
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=86.96 E-value=7.3 Score=33.27 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHhc
Q 032660 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK-------ADKEKLEQQVKAM 75 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk-------~eke~Le~qlk~~ 75 (136)
++.+...-+.+++.++..|+.+..+|..+|+.-+.|..-.+.....|+ .|-|+||.+|+.+
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~l 237 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 344555566677777777777777777777777777666666666665 3778888888763
No 217
>PRK15396 murein lipoprotein; Provisional
Probab=86.93 E-value=5.5 Score=28.27 Aligned_cols=43 Identities=23% Similarity=0.482 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
|.+|.++++.|+.....|..++.. +|.+-..-+.|-+|-++.|
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~-------~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNA-------MRSDVQAAKDDAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555554444 4444444444444444433
No 218
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.69 E-value=2.2 Score=35.55 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 40 LQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 40 L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|+++...++++.+-|++|-.....+.++++.+..+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~a 183 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDA 183 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555444444
No 219
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=86.69 E-value=1.7 Score=30.57 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032660 36 STEDLQEKIKELKAEKNELRDEKQRLKADKE 66 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke 66 (136)
+...|+++++.|+.++..+++++..+++++.
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~ 101 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIA 101 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555544444
No 220
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=86.63 E-value=3.2 Score=30.46 Aligned_cols=39 Identities=26% Similarity=0.530 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKAD 64 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~e 64 (136)
|..+++.|++.+..++++++.|+.+..++.+|...||.|
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555666666666666666666666665655555554
No 221
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=86.52 E-value=8.4 Score=26.50 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
.+..++.|+.-++++.+....++++...+..|-+++-.+-..+..+...
T Consensus 17 l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 17 LIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666666655555555555544433
No 222
>PRK02119 hypothetical protein; Provisional
Probab=86.46 E-value=4.4 Score=28.04 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=30.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 29 EAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
++..+.+....|+..+-....-..+|-+.-.....+|++|+.|++.|
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L 49 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM 49 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666665
No 223
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.42 E-value=2.9 Score=38.99 Aligned_cols=38 Identities=26% Similarity=0.483 Sum_probs=16.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 32 KLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
.|++++..+...++.|..|+..|+.|+.+|..++.++-
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 33344444444444444444444444444444444333
No 224
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=86.29 E-value=5.5 Score=30.49 Aligned_cols=59 Identities=19% Similarity=0.389 Sum_probs=46.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 17 SDVVRMM-EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 17 ~DAir~l-kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+++++-- +.|..+++.|-...+...|-++..+.|-+|+|++-..++.|++.+++-+..|
T Consensus 56 s~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~L 115 (126)
T PF07889_consen 56 SESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGL 115 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4444433 3577788888888888888888888899999999999999888888776664
No 225
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.25 E-value=6.5 Score=35.69 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=8.0
Q ss_pred HHHhHHHHHHHHHHHHhc
Q 032660 58 KQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 58 k~~Lk~eke~Le~qlk~~ 75 (136)
...++.+|+.++..++.+
T Consensus 89 l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 89 LKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHhhHHHHHHHHHHH
Confidence 334444444444444444
No 226
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.24 E-value=4 Score=38.47 Aligned_cols=52 Identities=29% Similarity=0.514 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH-----------------HHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELK-----------------AEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~-----------------~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
.|.+|.+|+++-.++++.|+.++.+|+ .|+|+|..+...++.++++|.+.+.
T Consensus 295 ~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 295 KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666554443 4666776666666666666665443
No 227
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=86.20 E-value=3.5 Score=29.42 Aligned_cols=45 Identities=18% Similarity=0.382 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
.+.-.=...|++..+.+..+++.++.+..++.++-..|+.++.++
T Consensus 59 ~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 59 QEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666666666666666666666666666665554
No 228
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=86.18 E-value=1.1 Score=30.78 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032660 27 RTEAQKLKQSTEDLQEKIKELKAEKNELR 55 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELr 55 (136)
|.|++-||+.+..|++.+..|+.|-+=||
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 229
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=86.05 E-value=9.1 Score=30.11 Aligned_cols=51 Identities=24% Similarity=0.468 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
+|+.-..++..++..|+.....+...+..|+....+|+.....++++++.|
T Consensus 88 ~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 88 EALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555444444444444444444444444433333
No 230
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=86.04 E-value=2.2 Score=35.66 Aligned_cols=59 Identities=22% Similarity=0.344 Sum_probs=47.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 11 DKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 11 DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
+=.+||.=-+.==...|....+|++++..++.++..|+.|.+.||.+|..|=..+-=|+
T Consensus 76 ~~~siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 76 GDSSILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667765555556789999999999999999999999999999999999975554444
No 231
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=85.81 E-value=1.5 Score=39.31 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
.-.||.|-.+||+||+.|..|...|+
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE 59 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLE 59 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666655553
No 232
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=85.80 E-value=9.3 Score=26.29 Aligned_cols=56 Identities=13% Similarity=0.303 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
|-..-+.+++++.-+++++++...+..++..+-.+-|++-++-..-....+.+-+.
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~ 76 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEA 76 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44555667777777777777777777777777777777776655544444444333
No 233
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=85.78 E-value=10 Score=27.63 Aligned_cols=45 Identities=16% Similarity=0.378 Sum_probs=24.8
Q ss_pred HHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 31 QKLKQSTEDLQEKIKEL--KAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L--~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.+.......++.+++.| ..+-+.|+-+-+.++-++..++.+++.+
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33355555555555555 5555555555555555555555555554
No 234
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=85.69 E-value=1.3 Score=34.36 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDL 40 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L 40 (136)
..+-.++||.|+++|++|+.++
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~i 59 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAI 59 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHHHHHHHcC
Confidence 3344556666666666655443
No 235
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.62 E-value=5.6 Score=36.78 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~ 59 (136)
++++.+-.......|+.+++.+..|++++||++.
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~ 406 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENK 406 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444445555555555555444
No 236
>PRK00846 hypothetical protein; Provisional
Probab=85.50 E-value=11 Score=26.78 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
++...+..|....+-.+.-|.+|...--+.+.+..+|+.++..|-.+|+.+.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666666666777777777777777777777777777787764
No 237
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=85.50 E-value=4.9 Score=28.73 Aligned_cols=55 Identities=22% Similarity=0.283 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.--++++..+.++..+...+++.+-.|..||+-=..+--.+...++.|..+++.+
T Consensus 10 ~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L 64 (96)
T PF08647_consen 10 QAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKL 64 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3345666666666666666666666666666655555555555555555555554
No 238
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=85.50 E-value=3.4 Score=34.85 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhH
Q 032660 51 KNELRDEKQRLK 62 (136)
Q Consensus 51 KnELrdEk~~Lk 62 (136)
.+.|++||.+|+
T Consensus 92 ~~~l~~EN~~Lr 103 (284)
T COG1792 92 VESLEEENKRLK 103 (284)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 239
>PRK00295 hypothetical protein; Provisional
Probab=85.45 E-value=9.3 Score=26.00 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
...+.+|....+-.+..|.+|...--+...+...|+.+...|.++++.+.
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34466666666666666666666666666666777777777777777764
No 240
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=85.41 E-value=6.8 Score=28.42 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEK 51 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EK 51 (136)
-++--+.=++.+++.+|++|++++..|+.||
T Consensus 16 ~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek 46 (87)
T PF10883_consen 16 LILAYLWWKVKKAKKQNAKLQKENEQLKTEK 46 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666665555555443
No 241
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.41 E-value=5.3 Score=36.91 Aligned_cols=38 Identities=34% Similarity=0.450 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 36 STEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+++.|+-.++-|..|-.|||...++||+.+++|....+
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~q 335 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQ 335 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45555555666666666666666666666666655443
No 242
>PRK02224 chromosome segregation protein; Provisional
Probab=85.38 E-value=6.8 Score=36.59 Aligned_cols=47 Identities=34% Similarity=0.504 Sum_probs=20.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 28 TEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+++.+..+...+++++..+..+.++++++...++..+++++.++..
T Consensus 251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~ 297 (880)
T PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDD 297 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443333
No 243
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=85.17 E-value=3.4 Score=38.62 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
|+++-.+|+.||++|..++.++++++.|....++|
T Consensus 372 In~qf~tIe~Lk~~n~~~~~kl~~~e~~L~r~~~~ 406 (557)
T PF01763_consen 372 INNQFDTIEDLKEENQDLEKKLRELESELSRYREE 406 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444444444444443
No 244
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=85.16 E-value=7.6 Score=28.68 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=25.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032660 32 KLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
.+...+..++..+..+.+|-..|..++..|++++.+|++.
T Consensus 47 ~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 47 NGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444555566666666666666666666666666666665
No 245
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=85.14 E-value=3.2 Score=36.10 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.|+||=+ |-|++-+.|..+++.|+.+-.+||+.-.+|+.||..|.+-+..
T Consensus 238 AAtRYRq-------KkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 238 AATRYRQ-------KKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777744 4455666666777777777777777777777777777766554
No 246
>PRK02793 phi X174 lysis protein; Provisional
Probab=85.10 E-value=10 Score=26.10 Aligned_cols=51 Identities=20% Similarity=0.204 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+...+.+|....+-.+..|.+|...--+.+.+...|+.+...|-++++.+.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556677777777777777777777777777777777777777777777764
No 247
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=85.09 E-value=2.8 Score=33.01 Aligned_cols=29 Identities=21% Similarity=0.522 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 46 ELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 46 ~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+..|+.+|+.....|+++...|+..++.
T Consensus 86 ~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 86 QWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44455555555555555555555544444
No 248
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.00 E-value=3.8 Score=34.78 Aligned_cols=31 Identities=19% Similarity=0.430 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELR 55 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELr 55 (136)
+|+.++.++.+...+|+.|++.+...-|..+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444
No 249
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=84.91 E-value=4 Score=40.87 Aligned_cols=54 Identities=24% Similarity=0.445 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
-|..|+.++.+|+++...+.++++....|+...+.+...|+..|+....+|+.+
T Consensus 409 evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 409 EVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888999999999999999999999889889999999998888888775
No 250
>PRK14148 heat shock protein GrpE; Provisional
Probab=84.89 E-value=4.2 Score=33.06 Aligned_cols=40 Identities=28% Similarity=0.488 Sum_probs=32.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 34 KQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 34 k~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
..+++.|++++..|+.|..+|++...++.+|.+++....+
T Consensus 39 ~~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 39 EEQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888888899999999999999999999888765433
No 251
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=84.83 E-value=7.1 Score=34.21 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032660 13 ATILSDVVRMMEQLRTEAQKLKQSTED-----LQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 13 AsIL~DAir~lkqLr~e~~~Lk~~n~~-----L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
+-|.++.+...-+||.+.+++-+.+-. -++++.++-...-|||.|..+|+.+++.|+.+
T Consensus 255 ak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~~ 318 (320)
T TIGR01834 255 AKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEAN 318 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 568899999999999999887765443 36888999999999999999999998888754
No 252
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=84.68 E-value=5.3 Score=29.53 Aligned_cols=42 Identities=36% Similarity=0.533 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
+.|.+|..+.+.|+.+.+.|+.++..|....+|++.=+..|+
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777666655444443
No 253
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=84.55 E-value=1.6 Score=29.65 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=17.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHh
Q 032660 52 NELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 52 nELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.||.+....|++||+|++.++..
T Consensus 24 ~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 24 EELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777778888888888877765
No 254
>PRK04325 hypothetical protein; Provisional
Probab=84.50 E-value=6.4 Score=27.21 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=22.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 31 QKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+.+.+.+..|+..+-....-..+|-+.-.....+|++|+.|++.|
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L 49 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL 49 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555544
No 255
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=84.47 E-value=13 Score=28.25 Aligned_cols=16 Identities=25% Similarity=0.551 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhHHHH
Q 032660 26 LRTEAQKLKQSTEDLQ 41 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ 41 (136)
|.....+|+.++..|.
T Consensus 32 l~~~~~~l~~e~~~l~ 47 (136)
T PF04871_consen 32 LEQENKRLEAEEKELK 47 (136)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 256
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=84.44 E-value=5.8 Score=34.39 Aligned_cols=52 Identities=29% Similarity=0.457 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
-.||.+|.-|.+. -..|.++.++|+.+|..|..|+...+.....|..+|+.+
T Consensus 90 ~lml~RL~~EL~~----Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l 141 (355)
T PF09766_consen 90 QLMLARLEFELEQ----RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSL 141 (355)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4577778777654 446778888888888888888888888888888888875
No 257
>PRK02224 chromosome segregation protein; Provisional
Probab=84.34 E-value=7.7 Score=36.23 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 032660 17 SDVVRMMEQLRTEAQKLKQST 37 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n 37 (136)
.++.+=+..|+.++++|++..
T Consensus 533 e~~~~~~~~l~~e~~~l~~~~ 553 (880)
T PRK02224 533 EEKRERAEELRERAAELEAEA 553 (880)
T ss_pred HhHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555544444
No 258
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=84.33 E-value=3.7 Score=29.43 Aligned_cols=48 Identities=33% Similarity=0.549 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCC
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPS 79 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p 79 (136)
+..++.++++-++.+..+|...+.|...|-|+.. ..+-+-+++|+..|
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN---------~EIv~~VR~~~mtp 50 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAEN---------LEIVQMVRSMKMTP 50 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHcCCCH
Confidence 4678889999999999999999988887776532 22334566665544
No 259
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=84.31 E-value=8.5 Score=33.59 Aligned_cols=55 Identities=25% Similarity=0.404 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIK---ELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~---~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
-.+++.|..++++|.++.+.|.++.. ..+..+++|.++..++..+|++++.-++.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788888888888888888887643 34456677778888888888888776554
No 260
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=84.25 E-value=4.6 Score=38.38 Aligned_cols=36 Identities=36% Similarity=0.515 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDE 57 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdE 57 (136)
=.+||-.|+.+|+.+....+|.++.|+.|..|||..
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888888888888888888777764
No 261
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=84.24 E-value=18 Score=28.39 Aligned_cols=47 Identities=26% Similarity=0.444 Sum_probs=30.8
Q ss_pred HHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032660 16 LSDVVRMM---EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 16 L~DAir~l---kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
|..++..| .++..+|+.|++++..|.+.++.+-.+..+.|.+...+-
T Consensus 14 L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 14 LSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444 456677777777777777777777777777776665543
No 262
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=84.16 E-value=6.6 Score=33.08 Aligned_cols=63 Identities=27% Similarity=0.438 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHhccCCCCCCC
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELR-------DEKQRLKADKEKLEQQVKAMSAPSGFLP 83 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELr-------dEk~~Lk~eke~Le~qlk~~~~~p~f~p 83 (136)
+-|.+|+.+.+..+.+.+.+-.|.+.-+++|.+|. ++.-+++.++.+||.-+.++.+.=|.+.
T Consensus 46 ~dve~l~~e~E~~~k~l~de~~E~r~~~~tke~lk~l~~~~~~~f~a~~edi~rlE~~i~~lgaRwGils 115 (231)
T COG5493 46 QDVEELRKETEQRQKELADEKLEVRKQKATKEDLKLLQRFQEEEFRATKEDIKRLETIITGLGARWGILS 115 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 57788899999999988887777777777777776 6777899999999988888766544443
No 263
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=84.11 E-value=6.8 Score=31.79 Aligned_cols=50 Identities=26% Similarity=0.373 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKE--LKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~--L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|+.++++.|+++.+.|++=.+. =..+.-+++.|..+.+.|||.++.|++.
T Consensus 136 D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~ 187 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKY 187 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444454444444444432211 0122334444555555555555555554
No 264
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=84.10 E-value=1.7 Score=30.61 Aligned_cols=37 Identities=32% Similarity=0.412 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 38 EDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
....++++.|+.+..+|++++..+..++.-++.+++.
T Consensus 66 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 66 ESDSPELKELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666666666666666554
No 265
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=84.00 E-value=12 Score=28.79 Aligned_cols=51 Identities=29% Similarity=0.482 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+..+..+...++.++...++.+..+..+.+.+..+...++.+..+|..+.-
T Consensus 86 l~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~ 136 (177)
T PF13870_consen 86 LHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGG 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444444444444444444444444444444444444444444444433
No 266
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=83.97 E-value=4.8 Score=37.61 Aligned_cols=51 Identities=31% Similarity=0.474 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHH---HhHHHHHHHHHHH
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKI-KELKAEKNELRDEKQ---RLKADKEKLEQQV 72 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~-~~L~~EKnELrdEk~---~Lk~eke~Le~ql 72 (136)
-|..||+|+-+|..-.+.|...- ++|+.=+.+|.+||. .|+-|+++|..-+
T Consensus 570 s~delr~qi~el~~ive~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka~ 624 (627)
T KOG4348|consen 570 SLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAV 624 (627)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHh
Confidence 47899999999999999998764 788888999999986 6888888887544
No 267
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=83.91 E-value=6.3 Score=28.50 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=35.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHH---------H-HHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 28 TEAQKLKQSTEDLQEKIKELK---------A-EKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~---------~-EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.||+.|.+........+..+. . .+.+|.+|+..|+...++.|.||+.+
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~L 62 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLL 62 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 466666666666665554433 2 56788899999999999999999986
No 268
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=83.87 E-value=10 Score=30.67 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 44 IKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+++|..+-.++-..+..++....+|++|++.+
T Consensus 177 L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l 208 (221)
T PF05700_consen 177 LRYLEQRWKELVSKNLEIEVACEELEQEIEQL 208 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455444555555555556666666665543
No 269
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=83.77 E-value=7 Score=35.19 Aligned_cols=44 Identities=23% Similarity=0.337 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
.+|..=+.+++++|..|+-...+++.|++|-.+|.+.|-.|..+
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE 173 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAE 173 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 44555566777788888888888888888888888888655443
No 270
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=83.72 E-value=8.4 Score=34.05 Aligned_cols=57 Identities=25% Similarity=0.422 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH---HH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQ---EK-IKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~---ee-~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.+.-+.+||.|-+++-+++..+. ++ ..+|+.+-.+|+++...|+.+...++.++..+
T Consensus 42 ~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 42 LLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557788888888888776643 22 67889999999999999999999999988884
No 271
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=83.68 E-value=16 Score=28.80 Aligned_cols=56 Identities=29% Similarity=0.462 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+.-.-+..|..+++.+......|...++.|+....+++.++..|++....-+.+.+
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~ 150 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKK 150 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666666666666666666666666666666666665555544
No 272
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=83.63 E-value=13 Score=29.75 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
..+..|..++..++.....|+..++.|+.+..+++..+..|.+.....+.+.+.
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~ 152 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDV 152 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666666666666665555554443
No 273
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.61 E-value=5.7 Score=33.75 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHh
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK----ADKEKLEQQVKA 74 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk----~eke~Le~qlk~ 74 (136)
.+|++..+|.+++.++|++...|..|.+.|...-.+.+ +..--||.++..
T Consensus 47 ~~~~r~~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~ 100 (247)
T COG3879 47 VRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEK 100 (247)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHH
Confidence 45666778888888888888888888888887777777 444455555555
No 274
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=83.57 E-value=5.7 Score=36.74 Aligned_cols=52 Identities=12% Similarity=0.221 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 24 EQLRTEAQKLKQSTEDLQEK----IKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee----~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+++.+|.+.++++|..|.+. +..|+....-+.+.+.....+|..||.||+-+
T Consensus 392 ~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 392 KKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444455555555444 23444444455566667777888899998874
No 275
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=83.29 E-value=16 Score=28.34 Aligned_cols=56 Identities=16% Similarity=0.340 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+.-+......++.|.+......++...|...+++|-+|+.+|..=.+.|...|+-+
T Consensus 20 l~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF 75 (157)
T PF04136_consen 20 LDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYF 75 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44456667778888889999999999999999999999999999988888877763
No 276
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=83.24 E-value=13 Score=26.11 Aligned_cols=56 Identities=20% Similarity=0.365 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELK-----AEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~-----~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
=..+|+.|+.|...|+-++..|+++.+.+. ..+++|..+...|-..+|.=..|+-.
T Consensus 15 Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~ 75 (79)
T PF06657_consen 15 LSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999998887765 35555555555555555555555543
No 277
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=83.22 E-value=18 Score=27.38 Aligned_cols=61 Identities=20% Similarity=0.379 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHH--HHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 15 ILSDVVRMMEQLRTEA--QKLKQ--STEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 15 IL~DAir~lkqLr~e~--~~Lk~--~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|++.-+.++.++-.++ +|||+ .-..|.+..+.=..++..|.......+.|.|||..|+.++
T Consensus 42 iv~~~~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq~~I~Ek~~eLERl~~E~~sL 106 (120)
T PF14931_consen 42 IVKGFIEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQALIAEKKMELERLRSEYESL 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666654443 45554 3334445555555666666666666667777777766653
No 278
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=83.19 E-value=6.6 Score=28.34 Aligned_cols=40 Identities=20% Similarity=0.378 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032660 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNEL 54 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnEL 54 (136)
|.-|--.++.+|..+++.+......|+....+|..+-.++
T Consensus 61 v~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred heecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444443333333
No 279
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=83.16 E-value=7.3 Score=30.46 Aligned_cols=42 Identities=29% Similarity=0.484 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKAD 64 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~e 64 (136)
+..|..++++|++....|++.+.+|.....+++.+.+.+-.+
T Consensus 96 ie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 96 IEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567889999999999999999999988888887766543
No 280
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.15 E-value=6.1 Score=40.66 Aligned_cols=64 Identities=19% Similarity=0.292 Sum_probs=55.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 11 DKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 11 DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|=..+|++.-.+.-.|+.++++++++...+.+..+....+.+....+...+++.+..++++++.
T Consensus 975 ~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E 1038 (1486)
T PRK04863 975 DAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQE 1038 (1486)
T ss_pred HHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999988888888877777666655
No 281
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=83.00 E-value=3.6 Score=32.27 Aligned_cols=51 Identities=25% Similarity=0.414 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 24 EQLRTEAQKLKQSTE----DLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~----~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+||.|..-||+... +...|++.|..-=..+.+--..|+++-|+-++++++
T Consensus 58 ~qlq~dl~tLretfsNFssst~aEvqaL~S~G~sl~~kVtSLea~lEkqqQeLkA 112 (138)
T PF03954_consen 58 SQLQRDLRTLRETFSNFSSSTLAEVQALSSQGGSLQDKVTSLEAKLEKQQQELKA 112 (138)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHhccccHHhHcccHHHHHHHHHHHHhh
Confidence 589999999999877 566678888888888889999999999999999988
No 282
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=82.94 E-value=9.1 Score=37.73 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhhHH
Q 032660 25 QLRTEAQKLKQSTED 39 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~ 39 (136)
++..+++.|+.+.+.
T Consensus 734 ~~~~~~~~l~~~~~~ 748 (1163)
T COG1196 734 QLQSRLEELEEELEE 748 (1163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 283
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=82.88 E-value=3 Score=31.39 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032660 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
..+..+||..|..|+||.+.|+-+.+=|.|..+..
T Consensus 71 ~~e~~rlkkk~~~LeEENNlLklKievLLDMLtet 105 (108)
T cd07429 71 GREVLRLKKKNQQLEEENNLLKLKIEVLLDMLAET 105 (108)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888787766543
No 284
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.87 E-value=4.8 Score=38.67 Aligned_cols=46 Identities=33% Similarity=0.505 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHhHHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELK-------AEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~-------~EKnELrdEk~~Lk~eke~Le 69 (136)
.+|+...+.|..+...|.++++++| ++-+||.+||-.|+.++..|.
T Consensus 65 ~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk 117 (717)
T PF09730_consen 65 QELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLK 117 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555444 345666667766666655554
No 285
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=82.87 E-value=9.7 Score=26.22 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=10.5
Q ss_pred HHHHhHHHHHHHHHHHHh
Q 032660 57 EKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 57 Ek~~Lk~eke~Le~qlk~ 74 (136)
.....+...+||..+++.
T Consensus 65 ~~~~~k~~~~KL~~df~~ 82 (102)
T PF14523_consen 65 NDRQQKLQREKLSRDFKE 82 (102)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 334445666677666665
No 286
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=82.80 E-value=12 Score=32.79 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHH
Q 032660 15 ILSDVVRMMEQLRTEAQKLKQSTEDL 40 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L 40 (136)
.++++..-+.+|++++.+++.....+
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555556666665555555543
No 287
>PRK04406 hypothetical protein; Provisional
Probab=82.78 E-value=9.4 Score=26.58 Aligned_cols=40 Identities=13% Similarity=0.259 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
-|.+|...+.-+...++.|.+.+-....+...|+.+...|
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555544444444444444444444
No 288
>PLN02678 seryl-tRNA synthetase
Probab=82.78 E-value=8.8 Score=34.70 Aligned_cols=57 Identities=28% Similarity=0.354 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQ---EKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~---ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.+.-+.+||.|.+++-+++..+. ++..+|..|-++|++|...|+.+...+++++..+
T Consensus 45 l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 45 RQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557788888888888776533 4567888888889999999999999999888884
No 289
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=82.50 E-value=9 Score=37.02 Aligned_cols=60 Identities=18% Similarity=0.354 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
||-|-.|++.-.+.|.-+|+.....|+++|.++.....||+.+.-.-+.|.++|+..+.+
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 355555555555666666666666666666666555555555555555555555555444
No 290
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=82.46 E-value=9.3 Score=38.59 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.+|-+++..+..|.+...+||+.+.+.......+...+.+|+.++..|+.|-.-|..||+.+
T Consensus 495 k~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~L 556 (1195)
T KOG4643|consen 495 KSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSL 556 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 57888999999999999999998888888877777777777777777777777776666654
No 291
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.26 E-value=11 Score=30.15 Aligned_cols=36 Identities=31% Similarity=0.519 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~ 59 (136)
.-||.+.+..+..|..|.+++..|+.+-+.|++|..
T Consensus 84 ~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 84 ALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777777777777666655543
No 292
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=82.23 E-value=7.1 Score=31.93 Aligned_cols=49 Identities=24% Similarity=0.400 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKE-----LKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~-----L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+....+|.-|.-.+..|+++|.. +..+.|.|.-|...++.+.|-++-+|
T Consensus 108 ~s~~~ei~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~emeL 161 (181)
T PF04645_consen 108 KSIKKEIEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIREMEL 161 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555432 33444555555555555555555443
No 293
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.13 E-value=7.1 Score=37.55 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQE 42 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~e 42 (136)
|++|.++..-+.+|+.|..
T Consensus 44 k~~~~~~~~~~~e~~rl~~ 62 (717)
T PF09730_consen 44 KQLRQELSNVQAENERLSQ 62 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444433333333333333
No 294
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=82.02 E-value=7.5 Score=26.17 Aligned_cols=46 Identities=15% Similarity=0.344 Sum_probs=27.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 31 QKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
.+|..+..++...+..++.|-.+++++...++.-+.+|=.-+..++
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs 48 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666666666666777767666666655555543
No 295
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=81.95 E-value=8.7 Score=32.21 Aligned_cols=55 Identities=20% Similarity=0.384 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
|....+.-..-+|.+..+=.....+......+|..||..|+.+++.|++|+..+.
T Consensus 195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~ 249 (269)
T KOG3119|consen 195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLR 249 (269)
T ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444445567777778888888888888888888877753
No 296
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=81.91 E-value=12 Score=25.40 Aligned_cols=45 Identities=11% Similarity=0.314 Sum_probs=33.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 31 QKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|.+.++.....+.+..++....|-...+..|..++++|+.++..+
T Consensus 14 Q~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 14 QAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777777777777888888888888888877653
No 297
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=81.83 E-value=0.44 Score=34.96 Aligned_cols=43 Identities=28% Similarity=0.418 Sum_probs=0.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 32 KLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+|..+.-++-.++..|..+-+.|+.|...|+.+.+.|+.|...
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ----------------------------------------HT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444444444555555555555555555555555555443
No 298
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=81.80 E-value=5.4 Score=28.82 Aligned_cols=38 Identities=39% Similarity=0.448 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
.+|..+.+.|+++.+.|+..+..|....++++.=+..|
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888887776665444
No 299
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=81.72 E-value=5.8 Score=35.86 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKAD 64 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~e 64 (136)
++|+.+.+++..+...++.++++++.+.+++..+...|+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~q 197 (563)
T TIGR00634 157 NEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQ 197 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444333
No 300
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=81.54 E-value=14 Score=24.96 Aligned_cols=45 Identities=13% Similarity=0.396 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.+++.++.+++.....+++.+..|+ .....++.++.+++.+|..+
T Consensus 2 ~~i~e~l~~ie~~l~~~~~~i~~lE-------~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDNHEERIDKLE-------KRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555444444443 44445555555666555554
No 301
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=81.36 E-value=11 Score=27.32 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
|.+|.++++.|+.....++.+++.++..-..-.+|=.+--
T Consensus 26 vdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN 65 (85)
T PRK09973 26 VNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRAN 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777766665554444444333
No 302
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=81.30 E-value=8.7 Score=34.45 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQE 42 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~e 42 (136)
+...-.-|++++.....|..++++|.+
T Consensus 214 l~~~~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 214 LQKILEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334455555555555555555555
No 303
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=81.29 E-value=9.8 Score=33.22 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=6.8
Q ss_pred CccccccCCC
Q 032660 111 GVAMWQFMPP 120 (136)
Q Consensus 111 g~~mWq~~pp 120 (136)
|.|++-.+|-
T Consensus 453 glpvLg~iP~ 462 (498)
T TIGR03007 453 GLPVLGVIPM 462 (498)
T ss_pred CCCeEEecCC
Confidence 6677776665
No 304
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=81.29 E-value=8.1 Score=32.11 Aligned_cols=43 Identities=21% Similarity=0.470 Sum_probs=21.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 31 QKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
.+|+.....|+.+...+.....+|+.|+..|...+..|+..|+
T Consensus 211 ~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l~ 253 (254)
T PF15458_consen 211 ERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELLK 253 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444444444444444555555555555555555553
No 305
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=81.26 E-value=0.76 Score=33.02 Aligned_cols=43 Identities=30% Similarity=0.468 Sum_probs=15.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 032660 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ql 72 (136)
+..|-.++..|..++.+|+.+.++|+++...++...+.|++.|
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 4455555555555555555555555555555555555555544
No 306
>PRK14127 cell division protein GpsB; Provisional
Probab=81.22 E-value=5.2 Score=29.99 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~ 59 (136)
+|.++-.+.+.|-++|..|++++..|+.+..+++.+..
T Consensus 31 FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 31 FLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444444455555555555555555444444444443
No 307
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=81.22 E-value=9.8 Score=30.77 Aligned_cols=59 Identities=24% Similarity=0.285 Sum_probs=33.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032660 11 DKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 11 DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
++-..|+.+.|-. +..+.+..++-....++-+.+-+..+.+++.+...|+.++...+++
T Consensus 117 N~C~e~~~~~~~~--~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 117 NTCAELGKEYREE--LEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred cHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455555544433 3344444455555555556666666777777777777777666553
No 308
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=81.12 E-value=17 Score=25.88 Aligned_cols=49 Identities=33% Similarity=0.389 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|.+|+.++......+.+....+..+-.-|.+.+.+|..||.+=.+++.+
T Consensus 1 L~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa 49 (96)
T PF08647_consen 1 LQTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFA 49 (96)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666666666666666554
No 309
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=81.12 E-value=3.5 Score=39.00 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=39.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCCC
Q 032660 34 KQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSGF 81 (136)
Q Consensus 34 k~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p~f 81 (136)
|+-...|+..+++|-.|...||.|+..||.+++.|+.+=+.+.++.+|
T Consensus 301 KEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~ 348 (655)
T KOG4343|consen 301 KEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPK 348 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCc
Confidence 445568899999999999999999999999999999877766655443
No 310
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=81.01 E-value=13 Score=30.26 Aligned_cols=47 Identities=28% Similarity=0.451 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
-..+..|-.+|..+...|..+.+.|...+..|++.|+.|+.|..=++
T Consensus 158 ~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~e 204 (206)
T PF14988_consen 158 TRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYLE 204 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888889999999999999999999999999999988876554
No 311
>PF13514 AAA_27: AAA domain
Probab=80.99 E-value=13 Score=36.40 Aligned_cols=64 Identities=23% Similarity=0.416 Sum_probs=49.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 11 DKATILSDVVRMMEQLRTEAQKLKQS---TEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 11 DKAsIL~DAir~lkqLr~e~~~Lk~~---n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
++-..|..++.-+++++.++++.... +..+..+...+..+.++|+.+...|+.+..+|+...+.
T Consensus 147 g~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~ 213 (1111)
T PF13514_consen 147 GRKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRA 213 (1111)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778999999999999999888764 45566667777778888888888888887777765444
No 312
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=80.96 E-value=7.1 Score=34.33 Aligned_cols=61 Identities=15% Similarity=0.317 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-cCCCCCCCC
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM-SAPSGFLPH 84 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~-~~~p~f~ph 84 (136)
|=|++-|+....+..++......++.+-++|-....+-|.|.|++.+.|.++ ++.|.||-.
T Consensus 108 kvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdE 169 (338)
T KOG3647|consen 108 KVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDE 169 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3345555555555566666666677777777777777777777777777776 446666654
No 313
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=80.95 E-value=3.2 Score=29.81 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=21.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 032660 35 QSTEDLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 35 ~~n~~L~ee~~~L~~EKnELrdEk~ 59 (136)
++.+.|.-+++-++.|+||||+-..
T Consensus 19 k~lE~L~~eL~~it~ERnELr~~L~ 43 (84)
T PF04822_consen 19 KELERLKFELQKITKERNELRDILA 43 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888889999999999999876
No 314
>PRK14161 heat shock protein GrpE; Provisional
Probab=80.93 E-value=5.8 Score=31.70 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032660 13 ATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNE 53 (136)
Q Consensus 13 AsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnE 53 (136)
-+|+.=+-..|.-++.++++|+++.+.|.+....+.+|-.-
T Consensus 11 ~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN 51 (178)
T PRK14161 11 QTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDN 51 (178)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555555555444444444333
No 315
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=80.86 E-value=11 Score=31.33 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
|--.++..|.++.+..+....+|.+.+...+
T Consensus 78 ~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K 108 (203)
T KOG3433|consen 78 DRKSVLQELESQLATGSQKKATLGESIENRK 108 (203)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 3344667777777777777777776654333
No 316
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=80.86 E-value=11 Score=38.06 Aligned_cols=40 Identities=20% Similarity=0.413 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
+.+++.+++...++...+++++..|+.++.+|+.+...|+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 285 LGRARDELETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444444444444444444444433
No 317
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=80.78 E-value=15 Score=29.68 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=8.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 032660 29 EAQKLKQSTEDLQEKIKELKAE 50 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~~E 50 (136)
++.+|...|+.|+.+.+.|+.+
T Consensus 112 e~~kl~~~~e~L~~e~~~L~~~ 133 (170)
T PRK13923 112 QIGKLQEEEEKLSWENQTLKQE 133 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 318
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=80.67 E-value=18 Score=31.76 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 032660 44 IKELKAEKN 52 (136)
Q Consensus 44 ~~~L~~EKn 52 (136)
|..|..|+.
T Consensus 144 i~~Le~e~~ 152 (310)
T PF09755_consen 144 IERLEKEKS 152 (310)
T ss_pred HHHHHHHHH
Confidence 334433333
No 319
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=80.57 E-value=15 Score=33.58 Aligned_cols=59 Identities=15% Similarity=0.379 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.++...-+.+|..++..++++...+.+.+..|..+-.+.|+.-..++..+..+...++.
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k 436 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEK 436 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555555544
No 320
>PF08738 Gon7: Gon7 family; InterPro: IPR014849 In Saccharomyces cerevisiae Gon7 is a member of the KEOPS protein complex. A protein complex proposed to be involved in transcription and promoting telomere uncapping and telomere elongation [].
Probab=80.47 E-value=8.9 Score=28.54 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHH
Q 032660 21 RMMEQLRTEAQKLKQSTE-DLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~-~L~ee~~~L~~EKnELrdEk~ 59 (136)
.+|.+||.++-.|.+.+. -|.++.++-|..+....+++.
T Consensus 54 t~L~~LR~~lt~lQddIN~fLTeRMe~dK~~~~~~~~~~~ 93 (103)
T PF08738_consen 54 TYLSELRAQLTTLQDDINEFLTERMEEDKARDAQAGEEKS 93 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhh
Confidence 788899999988887644 677777776666666555544
No 321
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=80.45 E-value=9.4 Score=27.66 Aligned_cols=11 Identities=45% Similarity=0.652 Sum_probs=4.2
Q ss_pred HHHHHHHHHHh
Q 032660 51 KNELRDEKQRL 61 (136)
Q Consensus 51 KnELrdEk~~L 61 (136)
-..||+|+.+|
T Consensus 53 N~rL~ee~rrl 63 (86)
T PF12711_consen 53 NIRLREELRRL 63 (86)
T ss_pred HHHHHHHHHHH
Confidence 33344443333
No 322
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=80.29 E-value=6.2 Score=27.46 Aligned_cols=36 Identities=28% Similarity=0.355 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032660 12 KATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKN 52 (136)
Q Consensus 12 KAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKn 52 (136)
-.-|..|+..++. +.+|.+.+.-|++||.-|++|.+
T Consensus 14 ~~~i~~d~Lslls-----V~El~eRIalLq~EIeRlkAe~~ 49 (65)
T COG5509 14 GHEIGNDALSLLS-----VAELEERIALLQAEIERLKAELA 49 (65)
T ss_pred ccccchhHHHHhh-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677755543 45555566666666665555544
No 323
>COG2841 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.25 E-value=10 Score=26.98 Aligned_cols=51 Identities=20% Similarity=0.388 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--------HHHHHHHHHHHhHHHHHHH
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKA--------EKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~--------EKnELrdEk~~Lk~eke~L 68 (136)
|.|..||.=-+--.+|=+++..|-..|+.... |-..|+.+|..||-||..+
T Consensus 7 ~~is~Lk~~dahF~rLfd~hn~LDd~I~~~E~n~~~~s~~ev~~LKKqkL~LKDEi~~~ 65 (72)
T COG2841 7 DLISKLKANDAHFARLFDKHNELDDRIKRAEGNRQPGSDAEVSNLKKQKLQLKDEIASI 65 (72)
T ss_pred HHHHHHhccchHHHHHHHHHhHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444344445555555666666665543 6666777777777666544
No 324
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=80.23 E-value=15 Score=24.66 Aligned_cols=25 Identities=12% Similarity=0.368 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDL 40 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L 40 (136)
|+.+.+-+.+...++..|......+
T Consensus 7 l~~~~~~~~~~~~~l~~L~~~~~~~ 31 (123)
T PF02050_consen 7 LAEAQQELQEAEEQLEQLQQERQEY 31 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 325
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.14 E-value=13 Score=32.45 Aligned_cols=37 Identities=38% Similarity=0.621 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 38 EDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.|+++++.|..|-+.||.|-+.|+.+....|.+-+.
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqq 199 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQ 199 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHH
Confidence 5677777777777777777777777777666655433
No 326
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=80.12 E-value=16 Score=30.41 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
+=...|+..++..|..++.-++...+|+.+.|-|+++-..|+.|..+++
T Consensus 95 qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~ 143 (203)
T KOG3433|consen 95 QKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQ 143 (203)
T ss_pred hhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455566666666666666667888888888887777777777765
No 327
>PRK04863 mukB cell division protein MukB; Provisional
Probab=80.10 E-value=12 Score=38.49 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=16.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 33 LKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.++...++++++.|+.+.+++..+...++++...+++++..
T Consensus 381 leeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~ 422 (1486)
T PRK04863 381 NEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQA 422 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444444444444333
No 328
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=80.09 E-value=8.2 Score=36.32 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHhccC
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEK----QRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk----~~Lk~eke~Le~qlk~~~~ 77 (136)
|-+++--++++.+ +|...++.++.+.-+.-.+.+++++++ .+-+.|+|+||.+|..++.
T Consensus 485 Lee~i~~~~~~i~---El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL 547 (622)
T COG5185 485 LEEDIKNLKHDIN---ELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDLNL 547 (622)
T ss_pred HHHHhhhHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6666655555544 455667777777766667777777654 4667899999999998764
No 329
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=80.03 E-value=17 Score=26.05 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=12.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032660 30 AQKLKQSTEDLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 30 ~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~ 59 (136)
...|+.....-++||..|+.=-..||.+..
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~KLi 36 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGKLI 36 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444333
No 330
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=80.01 E-value=17 Score=27.45 Aligned_cols=9 Identities=11% Similarity=0.342 Sum_probs=4.7
Q ss_pred hhHHHHHHH
Q 032660 14 TILSDVVRM 22 (136)
Q Consensus 14 sIL~DAir~ 22 (136)
.+|||++-+
T Consensus 77 ell~E~fiF 85 (134)
T PF07047_consen 77 ELLGEAFIF 85 (134)
T ss_pred HHHHHHHHH
Confidence 456665543
No 331
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=79.99 E-value=9.9 Score=34.95 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRD-EKQRLKADKEKLE 69 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd-Ek~~Lk~eke~Le 69 (136)
-+.+++|+.++++++++.+.++++++++..+...+.. -...|..++++.+
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 264 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAE 264 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666554443333 3334444444444
No 332
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=79.98 E-value=7.4 Score=33.42 Aligned_cols=52 Identities=21% Similarity=0.396 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+++|..++..|+.++..+++. ..++...+|+..++..|+.+.+.|+.+++.+
T Consensus 177 i~~l~~~l~~~~~~~~~~~~~-~~~~~~~~e~~~r~~~lr~~~~~l~~el~~a 228 (264)
T PF07246_consen 177 ISNLTNELSNLRNDIDKFQER-EDEKILHEELEARESGLRNESKWLEHELSDA 228 (264)
T ss_pred HHHhhhhHHHhhchhhhhhhh-hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 455666666666654444333 4556666667666676777777777776653
No 333
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=79.97 E-value=11 Score=25.84 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 44 IKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+..+..+.+.|+.+...+..+..+++.+|+
T Consensus 71 ~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 71 IEKLEKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 334
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=79.94 E-value=13 Score=34.04 Aligned_cols=54 Identities=30% Similarity=0.454 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.-|+|.+..+.+++.....+.+++.++..|..+|+-....|....-.|+.++..
T Consensus 439 ~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 439 ESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777777777777777777776666777777777776665
No 335
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=79.92 E-value=10 Score=25.55 Aligned_cols=33 Identities=15% Similarity=0.366 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 41 QEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 41 ~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
++++..++..-|+++++-..|+...+..+.+++
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~ 37 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIK 37 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444433
No 336
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=79.85 E-value=8.5 Score=27.77 Aligned_cols=37 Identities=22% Similarity=0.475 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 39 DLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 39 ~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.|.+++.++..+...|.+....|+..+.+++.+|+.+
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555556666666666653
No 337
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=79.77 E-value=5.7 Score=32.80 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032660 36 STEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
+|+.|..++..+..|.+.|++|+..|+.
T Consensus 126 ENe~Lh~~ie~~~eEi~~lk~en~~L~e 153 (200)
T PF07412_consen 126 ENEKLHKEIEQKDEEIAKLKEENEELKE 153 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 338
>PRK10698 phage shock protein PspA; Provisional
Probab=79.71 E-value=22 Score=29.00 Aligned_cols=53 Identities=17% Similarity=0.280 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
.-+.+|+.+++........|+..+..|+....+++..+..|.+....-+.+.+
T Consensus 99 ~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~ 151 (222)
T PRK10698 99 DLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRD 151 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666655555444433
No 339
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=79.70 E-value=10 Score=31.43 Aligned_cols=22 Identities=23% Similarity=0.453 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKI 44 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~ 44 (136)
|..|+.--++|+++|..|.+-+
T Consensus 57 IR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 57 IRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556666655554
No 340
>PRK00295 hypothetical protein; Provisional
Probab=79.67 E-value=12 Score=25.47 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
|.+|...+.-+...++.|.+.+-....+...|+.+...|......++
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66777777777777777777777777777777766666665555554
No 341
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=79.55 E-value=8.9 Score=33.45 Aligned_cols=52 Identities=21% Similarity=0.443 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
..|.+.++.+++.+..|++.+.+++..-.++..+...|+..++.||+..+.-
T Consensus 140 ~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRn 191 (370)
T PF02994_consen 140 ESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRN 191 (370)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 4577778888888888888888888777777777778888888888887773
No 342
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=79.44 E-value=6.8 Score=35.91 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 032660 47 LKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 47 L~~EKnELrdEk~~Lk~eke~ 67 (136)
+..|+.+|.+|..+|-+++++
T Consensus 181 ~~~e~~~l~~eE~~L~q~lk~ 201 (447)
T KOG2751|consen 181 LLKELKNLKEEEERLLQQLEE 201 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 343
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=79.37 E-value=8.4 Score=27.23 Aligned_cols=30 Identities=27% Similarity=0.457 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 40 LQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 40 L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
|++.++.+..+..+++++...+...++++.
T Consensus 89 l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 118 (120)
T PF02996_consen 89 LEEQLEKLEKELAELQAQIEQLEQTLQQLY 118 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333444444444444444444443
No 344
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=79.29 E-value=18 Score=30.59 Aligned_cols=39 Identities=28% Similarity=0.382 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 032660 39 DLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 39 ~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
..++++..|..+-++|.++...|++++..-+.||+.|+.
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444444444444444444445555555555555555543
No 345
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.25 E-value=9.9 Score=38.36 Aligned_cols=60 Identities=25% Similarity=0.425 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
-+.|+...+.+|-.++.+|+.+...|.++-..++++..+.-.+|..|+-++..|++|+..
T Consensus 259 ~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~ 318 (1200)
T KOG0964|consen 259 ALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITG 318 (1200)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhh
Confidence 355666667777777777777777777777777777666666687777777777777654
No 346
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=79.23 E-value=5.8 Score=39.69 Aligned_cols=61 Identities=30% Similarity=0.408 Sum_probs=37.0
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------HH--HHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 7 PPKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKI-------KE--LKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 7 p~K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~-------~~--L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+|+-|.++ ||||-.||++||....+-++++ +| ...|+++..+....|+.+++.++.+|+.
T Consensus 397 NQkl~K~~l-------lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~ 466 (1041)
T KOG0243|consen 397 NQKLMKKTL-------LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKD 466 (1041)
T ss_pred chHHHHHHH-------HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667665 4566666666666666655542 44 5556666666666666666666666655
No 347
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=79.13 E-value=10 Score=29.72 Aligned_cols=31 Identities=32% Similarity=0.565 Sum_probs=12.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032660 33 LKQSTEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
|+.++..|+.+++.|+.|-.+++-|-..++.
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k~ 109 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYKS 109 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333333333333333
No 348
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=79.08 E-value=9.7 Score=32.95 Aligned_cols=41 Identities=37% Similarity=0.430 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKAD 64 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~e 64 (136)
..|+.|-+.|++-|+.|..+.++|..|..+||+|...||..
T Consensus 107 ~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 107 EILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 45777888888888888888888888888888777777654
No 349
>PRK14151 heat shock protein GrpE; Provisional
Probab=79.04 E-value=6.1 Score=31.49 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 38 EDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
..|++++..|+.|..||++...++.+|.+++.
T Consensus 23 ~~l~~~i~~le~e~~el~d~~lR~~Ae~eN~r 54 (176)
T PRK14151 23 DDLTARVQELEEQLAAAKDQSLRAAADLQNVR 54 (176)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555443
No 350
>PRK14158 heat shock protein GrpE; Provisional
Probab=78.85 E-value=7.7 Score=31.54 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 37 TEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 37 n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
+..|++++.+|+.|..+|++...++.+|.+++.
T Consensus 42 ~~~le~~l~~le~e~~el~d~~lR~~AefeN~R 74 (194)
T PRK14158 42 IKELEEALAAKEAEAAANWDKYLRERADLENYR 74 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555555443
No 351
>PF12938 M_domain: M domain of GW182
Probab=78.84 E-value=6.9 Score=33.04 Aligned_cols=57 Identities=21% Similarity=0.358 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+.-+|+||..+|.+|...-..|+........|-..+--+...+|.+|-.|++||-+
T Consensus 147 qtL~LLnQLLq~I~~Lq~~Q~~L~~~~~~~~~~~~q~~~~I~~~kqqI~~lqnQIa~ 203 (235)
T PF12938_consen 147 QTLTLLNQLLQQIKRLQQQQQNLQRQGNASGQEEQQLAVQINKTKQQIQQLQNQIAA 203 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999998888776676654444555666666777888888888888873
No 352
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=78.70 E-value=5.7 Score=28.36 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 032660 27 RTEAQKLKQSTEDLQEKIKELKAEKNEL 54 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnEL 54 (136)
..+.++|+.....+++++..|..+..++
T Consensus 79 ~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 79 KKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333333333
No 353
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=78.69 E-value=13 Score=34.51 Aligned_cols=56 Identities=27% Similarity=0.308 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|--.+.-|...+|.|..+|..|++.+-.|+.-..+|.+|++++..++|-+-.|+..
T Consensus 295 asle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~ 350 (502)
T KOG0982|consen 295 ASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLIC 350 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 34456677888899999999999999999999999999998888777777655543
No 354
>PRK04654 sec-independent translocase; Provisional
Probab=78.68 E-value=23 Score=29.62 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 032660 20 VRMMEQLRTEAQKLKQST 37 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n 37 (136)
-++|+.+|..++..+++.
T Consensus 33 Gk~irk~R~~~~~vk~El 50 (214)
T PRK04654 33 GLWVRRARMQWDSVKQEL 50 (214)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544
No 355
>PRK14143 heat shock protein GrpE; Provisional
Probab=78.64 E-value=7.5 Score=32.51 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAE 50 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~E 50 (136)
+|..++.+|++++..|.+....+.+|
T Consensus 71 ~l~~el~~l~~e~~elkd~~lR~~Ad 96 (238)
T PRK14143 71 QLEQELESLKQELEELNSQYMRIAAD 96 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333
No 356
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=78.54 E-value=12 Score=26.54 Aligned_cols=31 Identities=23% Similarity=0.527 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
|...++.|+++...|++++..+..+.++++.
T Consensus 92 l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 92 LKKRLETLEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 357
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=78.47 E-value=28 Score=26.68 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 12 KATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIK-----ELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 12 KAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~-----~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|.-++.+--.-+.++-.|.+.|.-+-..+..+.+ .+..=+.-...|++.+...+..|..|++.+
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv 86 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQV 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444432 333334556667777777777777777664
No 358
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=78.42 E-value=13 Score=35.10 Aligned_cols=56 Identities=32% Similarity=0.506 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKE---LKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~---L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
...+.++-.++..||.+|..|.+.|++ +..-..+||+.+..|+.+--++++-+++|
T Consensus 263 ~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~m 321 (622)
T COG5185 263 EKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAM 321 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 356788899999999999999988754 44556677777777777766666655555
No 359
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=78.35 E-value=5.1 Score=28.54 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=11.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH
Q 032660 32 KLKQSTEDLQEKIKELKAEKNE 53 (136)
Q Consensus 32 ~Lk~~n~~L~ee~~~L~~EKnE 53 (136)
.|.++|..|.++++.|++|..+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555444333
No 360
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=78.32 E-value=20 Score=25.61 Aligned_cols=48 Identities=25% Similarity=0.481 Sum_probs=39.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 28 TEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.+-++|-.+...||+....|...-.+.++|...|++|-+-|++=+..+
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888888888888888888888888877774
No 361
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=78.26 E-value=19 Score=33.22 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 032660 27 RTEAQKLKQSTEDLQEKI 44 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~ 44 (136)
..++++|+++|..|.++.
T Consensus 54 E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 54 ELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555554
No 362
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=78.24 E-value=6.6 Score=28.02 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Q 032660 44 IKELKAEKNELRDEKQRLKADKE 66 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke 66 (136)
+..|....++++.+|..|..++.
T Consensus 82 ~~~L~~~l~~l~~eN~~L~~~i~ 104 (109)
T PF03980_consen 82 REQLNARLQELEEENEALAEEIQ 104 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 363
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=78.12 E-value=22 Score=25.39 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 44 IKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
......|...|+.+...|++++.+++.+++.
T Consensus 76 ~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 76 KEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888888888888776
No 364
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=78.11 E-value=11 Score=30.82 Aligned_cols=42 Identities=31% Similarity=0.479 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHhHHH
Q 032660 23 MEQLRTEAQKLKQSTED-----LQEKIKELKAEKNELRDEKQRLKAD 64 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~-----L~ee~~~L~~EKnELrdEk~~Lk~e 64 (136)
+..|+.+|.+|..++.+ +.+++..|+.|.|++-.|+...+-|
T Consensus 114 i~~L~~kI~~L~~~in~~~k~~~n~~i~slk~EL~d~iKe~e~~eme 160 (181)
T PF04645_consen 114 IEILRLKISSLQKEINKNKKKDLNEEIESLKSELNDLIKEREIREME 160 (181)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888887765 6678888888888888888766654
No 365
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=78.03 E-value=13 Score=32.62 Aligned_cols=48 Identities=25% Similarity=0.432 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
.+|+..+..|+.+|..|..+....+.+.+.|.+|+..|+..--+++..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~ 70 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAK 70 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777777777777777777776666555555443
No 366
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=77.99 E-value=12 Score=27.18 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 38 EDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 38 ~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
..+...++.|+...++|.++...++.++..++..+.
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 90 EFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444445555554444443
No 367
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=77.92 E-value=7.3 Score=24.61 Aligned_cols=37 Identities=38% Similarity=0.495 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
|-.+|.++......=..+++.||.+|=.|+||..++.
T Consensus 11 Ld~~I~~~e~~~~~~d~~l~~LKk~kL~LKDei~~ll 47 (49)
T PF04325_consen 11 LDKEIHRLEKRPEPDDEELERLKKEKLRLKDEIYRLL 47 (49)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444444455556666666665555544
No 368
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=77.88 E-value=17 Score=36.20 Aligned_cols=59 Identities=22% Similarity=0.460 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELK-AEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~-~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
++.+..-+++.+.++++|+.+...++.++...+ .++..++.+...|..++..++++++.
T Consensus 644 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~e~~~ 703 (1201)
T PF12128_consen 644 ITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLKQELEE 703 (1201)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666665555555543322 22344444444555555555544443
No 369
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=77.83 E-value=16 Score=31.98 Aligned_cols=52 Identities=25% Similarity=0.397 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+..|..++.+-.+++...+++|-.|..+.-+|+.....+-.|.|+|.++|..
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555555555544443
No 370
>PRK14139 heat shock protein GrpE; Provisional
Probab=77.82 E-value=8 Score=31.24 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKN 52 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKn 52 (136)
..|..++++|++++..|.+....+.+|-.
T Consensus 35 ~~l~~~l~~le~e~~elkd~~lR~~Aefe 63 (185)
T PRK14139 35 PALEAELAEAEAKAAELQDSFLRAKAETE 63 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555554444444444444433
No 371
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=77.75 E-value=21 Score=33.53 Aligned_cols=53 Identities=17% Similarity=0.351 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
.+--..|.+|+.++..+.++...|..+++.+..|.++.+.++..|+.+..-.+
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~ 383 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKK 383 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345677788888888888888888888888888888888777777766443
No 372
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=77.66 E-value=14 Score=27.27 Aligned_cols=43 Identities=30% Similarity=0.434 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
+.+++.|...+..|++++..|..+.++|+.....++.=++-|+
T Consensus 5 ~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~ 47 (140)
T PRK03947 5 EQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLE 47 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888888888887777776665
No 373
>PRK14162 heat shock protein GrpE; Provisional
Probab=77.60 E-value=8.3 Score=31.35 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 43 KIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 43 e~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
++..|+.+..+|++...++.+|.+++.
T Consensus 47 ~l~~l~~e~~elkd~~lR~~AEfeN~r 73 (194)
T PRK14162 47 EIADLKAKNKDLEDKYLRSQAEIQNMQ 73 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444433
No 374
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=77.59 E-value=17 Score=30.96 Aligned_cols=71 Identities=18% Similarity=0.275 Sum_probs=46.0
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 2 LEPGRPPKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKI----KELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 2 LeP~rp~K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~----~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+||++....+|.++|+= ++......++++-..+.+..+.+ .+|..-+++|+..+..|....+++..-++.+
T Consensus 61 ~dp~~~~~~~~~~~l~k---lf~k~~~~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L 135 (333)
T PF05816_consen 61 LDPSELKDEKKKGFLGK---LFGKAKNSLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQEL 135 (333)
T ss_pred CChhhhhhhhhhhHHHH---hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777434556677775 55555666666666666666664 4566667777777777777777666655553
No 375
>PRK09343 prefoldin subunit beta; Provisional
Probab=77.47 E-value=10 Score=28.08 Aligned_cols=45 Identities=16% Similarity=0.363 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 31 QKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+...+-...|.+++.+++.+...|...+..|+..+.+++.+|+.+
T Consensus 67 qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 67 VDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 376
>PRK14011 prefoldin subunit alpha; Provisional
Probab=77.37 E-value=22 Score=27.54 Aligned_cols=53 Identities=26% Similarity=0.466 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.||+.+ +...++.|.+....|.+.++++..+.++|+.+ |......++++.+.
T Consensus 86 ~~eA~~~---~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~---L~~k~~~~~~~~~~ 138 (144)
T PRK14011 86 VSEVIED---FKKSVEELDKTKKEGNKKIEELNKEITKLRKE---LEKRAQAIEQRQAQ 138 (144)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Confidence 3456555 55788888999999999999999999999877 44445556555443
No 377
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=77.30 E-value=6.4 Score=30.02 Aligned_cols=59 Identities=19% Similarity=0.392 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
-||+..-.|-+.|-.+|-...-.||....+|.+.-....+|+..|++|-.-|-|=++-+
T Consensus 45 l~a~e~~~d~~EEKaRlItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 45 LDAVEAENDVEEEKARLITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred ccccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 47888889999999999999999999999999999999999999999988888777774
No 378
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=77.27 E-value=28 Score=26.10 Aligned_cols=62 Identities=27% Similarity=0.449 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 032660 16 LSDVVRMMEQLRTEAQK---LKQSTEDLQEKIKELKA--EKNELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~---Lk~~n~~L~ee~~~L~~--EKnELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
|.+|-++|-.|+..+.+ ++.+...+.++++..+. +.+.++.+-..+..++..+=++++.+.+
T Consensus 5 l~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~Gv 71 (120)
T PF09969_consen 5 LEEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEELGV 71 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 45666666655554444 44444455444444433 4455555555555555555555555543
No 379
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=77.25 E-value=21 Score=27.34 Aligned_cols=49 Identities=18% Similarity=0.360 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 21 RMMEQLRTEAQKLKQSTE-----DLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~-----~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
+=+.||.-|.+++-+++. .+..=...+..||+++.+-+..|..+++.++
T Consensus 34 ~el~QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~qv~ 87 (131)
T PF11068_consen 34 QELQQLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQVQ 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777777777764 5555557777788888777777777776655
No 380
>PF15294 Leu_zip: Leucine zipper
Probab=77.22 E-value=16 Score=31.45 Aligned_cols=36 Identities=31% Similarity=0.564 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHHHHHH
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKI-------KELKAEKNELRD 56 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~-------~~L~~EKnELrd 56 (136)
..+.+|+.|.++||+...+++... ..|+.+.++||+
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999998887777654 445555555555
No 381
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=77.21 E-value=25 Score=25.52 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
..-...|+.++..++.++-.+...+++|..|.-+|.+++..-.. -+++.++++.
T Consensus 9 ~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~ 62 (106)
T PF05837_consen 9 QQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEK 62 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHH
Confidence 34455566666666666666666666666666666665554444 2333444443
No 382
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=77.09 E-value=24 Score=25.22 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKA---EKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~---EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+.+|+..++.|+..+..|+.-.+.+.. +-.+|.+=-..|-.=.-+||.++|
T Consensus 44 ~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 44 AAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444443333222222 333333333334444444444443
No 383
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=76.96 E-value=16 Score=25.61 Aligned_cols=31 Identities=26% Similarity=0.525 Sum_probs=13.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 032660 28 TEAQKLKQSTEDLQEKIKELKAEKNELRDEK 58 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk 58 (136)
..+..|..+++.|....+....|-..++++.
T Consensus 3 kdv~~l~~EkeeL~~klk~~qeel~~~k~~~ 33 (69)
T PF08912_consen 3 KDVANLAKEKEELNNKLKKQQEELQKLKEEE 33 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443
No 384
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=76.85 E-value=6.3 Score=37.48 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 032660 26 LRTEAQKLKQ 35 (136)
Q Consensus 26 Lr~e~~~Lk~ 35 (136)
|..++++||.
T Consensus 423 LE~dvkkLra 432 (697)
T PF09726_consen 423 LEADVKKLRA 432 (697)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 385
>PRK14154 heat shock protein GrpE; Provisional
Probab=76.84 E-value=7.8 Score=31.94 Aligned_cols=26 Identities=12% Similarity=0.295 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEK 51 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EK 51 (136)
|..+++.|++++..|.+....+.+|-
T Consensus 57 l~~el~~le~e~~elkd~~lRl~ADf 82 (208)
T PRK14154 57 LEGQLTRMERKVDEYKTQYLRAQAEM 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333333
No 386
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=76.83 E-value=13 Score=28.61 Aligned_cols=30 Identities=37% Similarity=0.594 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
||-|+ ..|-+.-+.|++.+..|.+.|+-|+
T Consensus 33 Daqrl-eel~~knqqLreQqk~L~e~i~~LE 62 (120)
T PF10482_consen 33 DAQRL-EELFSKNQQLREQQKTLHENIKVLE 62 (120)
T ss_pred cHHHH-HHHHcccHHHHHHHHHHHHHHHHHH
Confidence 44333 5555555666666666666554443
No 387
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=76.79 E-value=19 Score=28.99 Aligned_cols=53 Identities=25% Similarity=0.462 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH--------HHHHHHHHHHhc
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKA--------DKEKLEQQVKAM 75 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~--------eke~Le~qlk~~ 75 (136)
|.-|+.+..+.++.+..++.++++...|..-++++...|+. |.++|+.+|..+
T Consensus 70 vr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~ 130 (194)
T PF15619_consen 70 VRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQL 130 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
No 388
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=76.77 E-value=0.79 Score=38.79 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
...+..|..||.-.+.|.++.+.|..|...|+.||++|
T Consensus 125 EEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 125 EEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333333333333444444
No 389
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=76.30 E-value=18 Score=28.31 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=37.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 29 EAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
++++|+++...+.++|+.-+....||......+|.=+.|=++-...
T Consensus 2 ~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knLv~RN~~~~~~ 47 (142)
T PF08781_consen 2 ECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNLVQRNRQLEQS 47 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 6788999999999999998888899998888888877765544444
No 390
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=76.30 E-value=18 Score=34.48 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 12 KATILSDVVRMMEQLRTEAQKLKQSTEDLQ----EKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 12 KAsIL~DAir~lkqLr~e~~~Lk~~n~~L~----ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|+.-+.-...+|.+.-+++++|-.++..++ +++...+.+.+.|..+.....++++.|+.+|+.
T Consensus 276 ~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~ 342 (629)
T KOG0963|consen 276 KIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS 342 (629)
T ss_pred cCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444455555555555544444333 334445555666666666666666666665554
No 391
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=76.26 E-value=12 Score=31.17 Aligned_cols=50 Identities=28% Similarity=0.479 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032660 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKE 66 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke 66 (136)
=+|++++ ..|+..+..|+.+...+...+..|..||-+|...+..|...+.
T Consensus 204 P~L~~~~---~rL~~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l~ 253 (254)
T PF15458_consen 204 PSLSECL---ERLRESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELLK 253 (254)
T ss_pred CchhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566655 8888889999999999999999999999999988888877653
No 392
>PRK14147 heat shock protein GrpE; Provisional
Probab=76.01 E-value=8.2 Score=30.62 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032660 43 KIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 43 e~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
++..|+.|..+|++...++.+|.++.
T Consensus 26 ~l~~l~~e~~elkd~~lR~~Ad~eN~ 51 (172)
T PRK14147 26 EVESLRSEIALVKADALRERADLENQ 51 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444443
No 393
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=76.00 E-value=16 Score=30.76 Aligned_cols=41 Identities=27% Similarity=0.471 Sum_probs=28.3
Q ss_pred HHhhHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 34 KQSTEDLQEKIKEL-KAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 34 k~~n~~L~ee~~~L-~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+....+++.+...+ +.|-.-||.|+..|+.|+|++.++|..
T Consensus 100 ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 100 KVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444432 345556899999999999999998877
No 394
>PF13166 AAA_13: AAA domain
Probab=75.85 E-value=17 Score=33.07 Aligned_cols=47 Identities=19% Similarity=0.416 Sum_probs=23.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 29 EAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+++.++.....++.++..++.+.++|+.+....+.-.++++..|+.+
T Consensus 425 ~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 425 EINSLEKKLKKAKEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34444444444444444444444555544444444455555555554
No 395
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=75.83 E-value=5.7 Score=36.01 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQE 42 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~e 42 (136)
+.+|..|+.|..+++.+...|+.
T Consensus 285 ~~lI~~Le~qLa~~~aeL~~L~~ 307 (434)
T PRK15178 285 YQLIAGFETQLAEAKAEYAQLMV 307 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555543
No 396
>PRK02793 phi X174 lysis protein; Provisional
Probab=75.83 E-value=18 Score=24.89 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
-|.+|..++.-+...++.|.+-+-....+...|+.+...|......+
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666666666666666665555555555555555554444443
No 397
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=75.83 E-value=6.7 Score=33.31 Aligned_cols=26 Identities=15% Similarity=0.516 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELK 48 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~ 48 (136)
+.+|..+...|+++|..|+++++.+.
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~ 59 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQ 59 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333
No 398
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=75.78 E-value=4.2 Score=28.31 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 51 KNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 51 KnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
-.||.+....|.+||+||+.|+..
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468889999999999999999876
No 399
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=75.73 E-value=19 Score=27.61 Aligned_cols=51 Identities=29% Similarity=0.335 Sum_probs=31.2
Q ss_pred CchhhhHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 032660 10 TDKATILSDVV---RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQR 60 (136)
Q Consensus 10 ~DKAsIL~DAi---r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~ 60 (136)
|||-.|..--. .-|..|-.|+..||+-...|-||...|..|-.-||+....
T Consensus 1 mdKkeiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 1 MDKKEIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 46666543222 2345566677777777777777777777666666666554
No 400
>PRK00736 hypothetical protein; Provisional
Probab=75.67 E-value=16 Score=24.87 Aligned_cols=49 Identities=12% Similarity=0.252 Sum_probs=29.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 28 TEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
..+.+|....+-.+..+.+|...--+-..+...|+.+...|-.+++.+.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555556666665555555666666666666666666653
No 401
>PRK15396 murein lipoprotein; Provisional
Probab=75.58 E-value=21 Score=25.28 Aligned_cols=39 Identities=13% Similarity=0.360 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 36 STEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.+.|..++..|+.+-+.|..+-..++++...-+.+-..
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~r 64 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777777777777777777666555443
No 402
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=75.52 E-value=36 Score=26.41 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 15 ILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
-+.++-+.++..+..+..++..+..|....+.-..+--.||++.....+.-.+-|++++.
T Consensus 27 ~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~r 86 (135)
T TIGR03495 27 DLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIER 86 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888888888888888888777777777888777666555555555554
No 403
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=75.50 E-value=26 Score=26.64 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 032660 21 RMMEQLRTEAQKLKQ 35 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~ 35 (136)
...+.|+.+++.|+.
T Consensus 34 ~~~~~l~~e~~~l~~ 48 (136)
T PF04871_consen 34 QENKRLEAEEKELKE 48 (136)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555555554
No 404
>PRK00736 hypothetical protein; Provisional
Probab=75.45 E-value=23 Score=24.10 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
|.+|...+.-+...++.|.+.+-.-..+...|+.+...|......++
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677777777777777777766666666666666666655544443
No 405
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=75.41 E-value=17 Score=30.10 Aligned_cols=53 Identities=23% Similarity=0.362 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHhc
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNE---------LRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnE---------LrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+..|-.++.+|.+...+|+.++.++.+|..+ ++++.+.|+.+--.....|+.+
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666544 4556666666655555555554
No 406
>PF13166 AAA_13: AAA domain
Probab=75.39 E-value=26 Score=31.90 Aligned_cols=37 Identities=22% Similarity=0.487 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 37 TEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 37 n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
...++.++..++.+++.+..+...++.++..|+.++.
T Consensus 419 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 455 (712)
T PF13166_consen 419 IKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLK 455 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444555555555555555544
No 407
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=75.18 E-value=41 Score=27.76 Aligned_cols=53 Identities=19% Similarity=0.381 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
.|+..++--...-.......+....|-..|+.|+.....+...|+.|++.+..
T Consensus 130 ~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 130 RLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333344555566666666666666666667776666543
No 408
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=75.15 E-value=22 Score=31.45 Aligned_cols=52 Identities=17% Similarity=0.361 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 23 MEQLRTEAQKLKQSTED----LQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~----L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|.+|..|+.++-++.+. |..+...+....+.|++++..+-.|.+.|++|++.
T Consensus 10 i~~li~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyre 65 (328)
T PF15369_consen 10 IANLIKELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRE 65 (328)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34555555555444433 33444556666777778888888888888877654
No 409
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=75.13 E-value=31 Score=31.83 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=9.7
Q ss_pred HHHhHHHHHHHHHHHHhc
Q 032660 58 KQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 58 k~~Lk~eke~Le~qlk~~ 75 (136)
+..|..-.++|..|++.+
T Consensus 101 ~~~l~~~~~~L~~~F~~L 118 (475)
T PRK10361 101 IRQMINSEQRLSEQFENL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455555566666654
No 410
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=75.12 E-value=16 Score=25.97 Aligned_cols=30 Identities=37% Similarity=0.454 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 46 ELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 46 ~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.+-..-.||-.|.+.|+.|+-+||+++-.+
T Consensus 51 ~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 51 SLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566788899999999999999988664
No 411
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.07 E-value=9.2 Score=38.01 Aligned_cols=54 Identities=26% Similarity=0.443 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+.--+.+++.+....+....++..|.++..|+.+-+..|--|+..|++|++.+-
T Consensus 467 ~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q 520 (1118)
T KOG1029|consen 467 ITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQ 520 (1118)
T ss_pred cchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 344456677777777777788888888888888888889899999999988864
No 412
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=75.07 E-value=29 Score=25.16 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032660 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNE 53 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnE 53 (136)
+|++=..==+++++.|+++|.++|+.|..|..-.+.|.+.
T Consensus 16 ~i~~y~~~k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 16 LILAYLWWKVKKAKKQNAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566667889999999999999999888777666543
No 413
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=75.02 E-value=12 Score=26.45 Aligned_cols=29 Identities=34% Similarity=0.547 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNE 53 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnE 53 (136)
+|..+.+.|+.+...|+..+..|....+|
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e 31 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTE 31 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444444333
No 414
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=74.97 E-value=13 Score=30.63 Aligned_cols=51 Identities=35% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------------------------------hHHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQR------------------------------LKADKEKLEQQV 72 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~------------------------------Lk~eke~Le~ql 72 (136)
|.....|+++.+.+.+.|++++..|..|..+||++... |..+.++|..+|
T Consensus 68 LE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL 147 (202)
T PF06818_consen 68 LEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAEL 147 (202)
T ss_pred HHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHH
Q ss_pred H
Q 032660 73 K 73 (136)
Q Consensus 73 k 73 (136)
.
T Consensus 148 ~ 148 (202)
T PF06818_consen 148 Q 148 (202)
T ss_pred H
No 415
>PRK14155 heat shock protein GrpE; Provisional
Probab=74.74 E-value=7.4 Score=31.94 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEK 51 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EK 51 (136)
..|..++++|++++..|++....+.+|-
T Consensus 16 ~~l~~~l~~le~e~~elkd~~lR~~Aef 43 (208)
T PRK14155 16 DDAAQEIEALKAEVAALKDQALRYAAEA 43 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 416
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=74.73 E-value=21 Score=38.06 Aligned_cols=50 Identities=14% Similarity=0.331 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADK 65 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ek 65 (136)
+.-.-+.+++|.+++.+|.++.+........++..+++|..|-..|+.+.
T Consensus 1092 ~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~L 1141 (1930)
T KOG0161|consen 1092 VAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEEL 1141 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444333
No 417
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=74.72 E-value=6.8 Score=27.12 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
++|++.|++|+..|+.|...+.+-+....+|--
T Consensus 1 erL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~ 33 (67)
T PF10506_consen 1 ERLKRRIEELKSQNEMLSSTLEERKQQSEELSM 33 (67)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999888888777643
No 418
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=74.71 E-value=20 Score=31.02 Aligned_cols=46 Identities=20% Similarity=0.362 Sum_probs=20.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 29 EAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
++..|.+.+..|+.++++...|..-++.....|+.+...|..||+.
T Consensus 120 ~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~ 165 (302)
T PF09738_consen 120 KLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQ 165 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333333334444455555555555543
No 419
>PRK14145 heat shock protein GrpE; Provisional
Probab=74.71 E-value=7.9 Score=31.61 Aligned_cols=38 Identities=32% Similarity=0.431 Sum_probs=22.3
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032660 33 LKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
...++..|++++..++.+..+|++...++.+|.++...
T Consensus 43 ~~~e~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rk 80 (196)
T PRK14145 43 TVDEIEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRK 80 (196)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666666666666666666665543
No 420
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=74.68 E-value=12 Score=27.04 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
+|..+.+.|+.+.+.|+.++..|...++|+..
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~ 34 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQ 34 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666555555555433
No 421
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=74.63 E-value=0.91 Score=33.31 Aligned_cols=43 Identities=26% Similarity=0.479 Sum_probs=1.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 032660 25 QLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 25 qLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
+|-.+..++-+++..|+.++..|..|..+|+++...|+.+...
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~ 45 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEELEELEEQEVE 45 (118)
T ss_dssp ----------------------------------------HT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4555556666666666666666666666666666666655544
No 422
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=74.60 E-value=18 Score=31.55 Aligned_cols=47 Identities=32% Similarity=0.396 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
..|..|+.+|++....|++.+.+.+...+.|..-...|..||..-++
T Consensus 320 ~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~ 366 (384)
T PF03148_consen 320 YGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNN 366 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999988876664
No 423
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=74.57 E-value=0.98 Score=41.99 Aligned_cols=56 Identities=34% Similarity=0.526 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
|-++.|.+||.+...|.+.+..++.+++.++.+..+|..|+..|+.++++++..+.
T Consensus 340 ~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~ 395 (722)
T PF05557_consen 340 DLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLE 395 (722)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778887777777777777777777777776666666666666655554433
No 424
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=74.56 E-value=25 Score=30.58 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=23.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 33 LKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|+..+.++.+++.+.+...++|+++...|+.++++++.++..
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555555555555555555566666555555444
No 425
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=74.37 E-value=30 Score=29.96 Aligned_cols=31 Identities=23% Similarity=0.377 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 44 IKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
...+.+||+||+.+-+.|..+..-|.+++..
T Consensus 216 q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r 246 (289)
T COG4985 216 QQHYVAEKSELQKRLAQLQTELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3567789999999999999999988888877
No 426
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=74.34 E-value=24 Score=27.43 Aligned_cols=36 Identities=25% Similarity=0.443 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQE---KIKELKAEKNELRDEK 58 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~e---e~~~L~~EKnELrdEk 58 (136)
++.|.+|+......+..|.. .+.+|+.+..+|+.++
T Consensus 29 ~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~ 67 (155)
T PF06810_consen 29 RDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKN 67 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 33444444444444444443 3344444444444433
No 427
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=74.24 E-value=1 Score=42.07 Aligned_cols=49 Identities=33% Similarity=0.546 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQ 71 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~q 71 (136)
+.++..++++|.++...+.+..++|..+.++|.+++..|+.+++.++.+
T Consensus 69 i~~le~~l~~le~~l~e~~~~~e~L~~~~~~L~E~~~~L~~~~~~l~~~ 117 (759)
T PF01496_consen 69 IDELEEELEELEEELRELNENLEKLEEELNELEEEKNVLEEEIEFLEEL 117 (759)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 428
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=74.12 E-value=38 Score=30.46 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKA 49 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~ 49 (136)
-..++-+..|++++|+.+..|++++..|+.
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~ 240 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKE 240 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555544
No 429
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=74.08 E-value=18 Score=26.71 Aligned_cols=40 Identities=30% Similarity=0.487 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
.+||.+.|=-+++-+-|.-++-+|..+...|+.|.+++|+
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888887777777777666555555555444444
No 430
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=74.02 E-value=9.8 Score=29.46 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=11.6
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Q 032660 31 QKLKQSTEDLQEKIKELKAEKNE 53 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L~~EKnE 53 (136)
.+...+...|+.|+++|+.|.|.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~ 58 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNA 58 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHHHc
Confidence 34445555555555555555543
No 431
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.91 E-value=27 Score=30.59 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.+.+++...+++|..++.++.+..+.-+. +|....++|..-...|...+++++.++..+
T Consensus 129 ~~~~~~~~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei~~I 187 (300)
T KOG2629|consen 129 DQFDKAAKSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLESEINTI 187 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 45677778888888888888776665555 333333444343346667777777776663
No 432
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=73.84 E-value=23 Score=36.42 Aligned_cols=60 Identities=25% Similarity=0.398 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHH--------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQ--------EKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~--------ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
--+.++-.+.++|...+.+|+.+...|+ .++++....-.+.++++..|+++.-.++.+++
T Consensus 458 ~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele 525 (1317)
T KOG0612|consen 458 QAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELE 525 (1317)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677778877777776666666 33444443334444444444444444444443
No 433
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=73.82 E-value=33 Score=25.94 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+..|++=+.+|+.++.+++... +++|..++ ..+.++...|+.+|+.|+..|+.
T Consensus 5 a~~al~ki~~l~~~~~~i~~~~---~~~I~~i~---~~~~~~~~~l~~~i~~l~~~l~~ 57 (149)
T PF07352_consen 5 ADWALRKIAELQREIARIEAEA---NDEIARIK---EWYEAEIAPLQNRIEYLEGLLQA 57 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777777643 44444443 34456777888888888888877
No 434
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=73.70 E-value=27 Score=24.21 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 032660 15 ILSDVVRMMEQLRTEAQKLKQS 36 (136)
Q Consensus 15 IL~DAir~lkqLr~e~~~Lk~~ 36 (136)
|+.|..+.+.++-...+.++++
T Consensus 7 ~~d~~~~~~~~~~~~~~~~~~e 28 (79)
T PF04380_consen 7 IFDDLAKQISEALPAAQGPREE 28 (79)
T ss_pred HHHHHHHHHHHHHHhhhhhHHH
Confidence 4555555555555544444444
No 435
>PRK00846 hypothetical protein; Provisional
Probab=73.68 E-value=29 Score=24.58 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=28.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 31 QKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+.+.+.+..|+..+-....=..+|-+.-.....+|++|+.|++.|.
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 54 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666666666654
No 436
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=73.58 E-value=23 Score=37.78 Aligned_cols=59 Identities=19% Similarity=0.401 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+.|=-..+.+|..++.+|...+..|.++........+++...++.|..+.+.|..++.-
T Consensus 1085 ~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee 1143 (1930)
T KOG0161|consen 1085 LEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEE 1143 (1930)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666666666666666666666666666777777666666554
No 437
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=73.52 E-value=33 Score=28.59 Aligned_cols=60 Identities=17% Similarity=0.349 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 16 LSDVVRMMEQLR--TEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 16 L~DAir~lkqLr--~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|+.|.+.|+++. ++|++||.++..++.+.++.+.+..+.+..-..--+.-...|.++..+
T Consensus 18 i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~L 79 (207)
T PF05546_consen 18 IFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNEL 79 (207)
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788886 689999999999999888888777777766665555555555555553
No 438
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=73.49 E-value=40 Score=26.04 Aligned_cols=60 Identities=17% Similarity=0.426 Sum_probs=44.3
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 15 ILSDVVRMM-EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 15 IL~DAir~l-kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+.|++.-+ .++...+...-.-+..++.++..++.|...|++.+.+.+..+++|.+=|..
T Consensus 26 ~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~ 86 (162)
T PF05565_consen 26 AIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLD 86 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666553 345666666666777788888888888888888888888888888876554
No 439
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=73.46 E-value=7.5 Score=31.79 Aligned_cols=35 Identities=26% Similarity=0.491 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 39 DLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 39 ~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
.|+.+..+|+.+...|+.++.+|+.|...|..++.
T Consensus 109 qlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~ 143 (198)
T KOG0483|consen 109 QLEKDYESLKRQLESLRSENDRLQSEVQELVAELS 143 (198)
T ss_pred hhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444
No 440
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=73.37 E-value=18 Score=29.89 Aligned_cols=34 Identities=35% Similarity=0.541 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~ 59 (136)
++..+.+|+.+...|+.+|.+++..++.|...++
T Consensus 111 ~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~ 144 (225)
T COG1842 111 AEEQVEKLKKQLAALEQKIAELRAKKEALKARKA 144 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443333
No 441
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=73.30 E-value=24 Score=32.58 Aligned_cols=56 Identities=20% Similarity=0.345 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.|--+.|++.++.-++.+.+.-+++-+....|+|.-|.|.+.-..|++-.++++..
T Consensus 72 gVfqlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~ 127 (499)
T COG4372 72 GVFQLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAA 127 (499)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888888888888888888888887777777777776666665544
No 442
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=73.20 E-value=41 Score=26.49 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 52 NELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 52 nELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
..++.|+..|.+.++.|+.+.+.+.
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888887764
No 443
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=73.16 E-value=24 Score=32.33 Aligned_cols=56 Identities=21% Similarity=0.402 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
-|||-+|-++.++.+...+++....+.+...+-|+++|-+.|+-..+.|-++-+.+
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~L 486 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTREL 486 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46778888888888888888888888888888888888888888888777765543
No 444
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=72.93 E-value=22 Score=29.47 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 37 TEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 37 n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
...|+..+..|+.|..+||-....+..++++++++-+.
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~ 93 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 93 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666554333
No 445
>PRK01156 chromosome segregation protein; Provisional
Probab=72.91 E-value=34 Score=32.34 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=13.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032660 29 EAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 29 e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
++..++.....|..++..++.+.+++..+...|+
T Consensus 205 ~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~ 238 (895)
T PRK01156 205 QIADDEKSHSITLKEIERLSIEYNNAMDDYNNLK 238 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444343333333333
No 446
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=72.86 E-value=13 Score=33.65 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 032660 36 STEDLQEKIKELKAEKNELRDEKQRLKADKE 66 (136)
Q Consensus 36 ~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke 66 (136)
++..|++|...||+|-|+|+-|-.+|++|-.
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555555555556555555555555555444
No 447
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=72.81 E-value=26 Score=35.52 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=4.7
Q ss_pred hHHHHHHHHHHHH
Q 032660 61 LKADKEKLEQQVK 73 (136)
Q Consensus 61 Lk~eke~Le~qlk 73 (136)
|+.+++.++.++.
T Consensus 309 le~~~~~l~~~~~ 321 (1353)
T TIGR02680 309 LEREADALRTRLE 321 (1353)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 448
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=72.78 E-value=37 Score=25.38 Aligned_cols=49 Identities=18% Similarity=0.369 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 27 RTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 27 r~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
++....|++....-...++.+..|..-|.=.|..|...++.|+.++...
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555555677788888888888889999999999988853
No 449
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=72.75 E-value=30 Score=32.80 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 032660 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
+-|+|+=.-++-++-|.+.|++-.....+.-+.+++|-.||.|..+.+....+.-|.+||.+..
T Consensus 240 sql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 240 SQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566666667777777777777666666777888888888888888888888888888888643
No 450
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=72.74 E-value=5.7 Score=29.26 Aligned_cols=38 Identities=34% Similarity=0.567 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
.+++.+++..++.....++++...-.+|.++++++..|
T Consensus 79 ~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l 116 (133)
T PF06148_consen 79 SQFREEVESVRDELDNTQEEIEDKLEERKELREEKALL 116 (133)
T ss_dssp HHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444445555555555433
No 451
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=72.58 E-value=14 Score=32.08 Aligned_cols=11 Identities=0% Similarity=0.166 Sum_probs=4.1
Q ss_pred HHHHHHHHHHh
Q 032660 64 DKEKLEQQVKA 74 (136)
Q Consensus 64 eke~Le~qlk~ 74 (136)
+....+.++..
T Consensus 142 ~L~~~~~~l~q 152 (301)
T PF06120_consen 142 ELAVAQERLEQ 152 (301)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 452
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=72.47 E-value=22 Score=29.81 Aligned_cols=39 Identities=28% Similarity=0.582 Sum_probs=17.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 032660 31 QKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLE 69 (136)
Q Consensus 31 ~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le 69 (136)
+.|.+..+.|..+.+.|..|..-|..|++.|.+|++..+
T Consensus 41 ~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~ 79 (228)
T PRK06800 41 EELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQ 79 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444
No 453
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=72.46 E-value=26 Score=23.43 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHH
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDL 40 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L 40 (136)
+.+..++.++|+.++.....+...+
T Consensus 21 ~~~i~~~~~~L~~~i~~~~~eLr~~ 45 (87)
T PF08700_consen 21 IKEIRQLENKLRQEIEEKDEELRKL 45 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666555554443
No 454
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=72.30 E-value=28 Score=28.21 Aligned_cols=66 Identities=21% Similarity=0.319 Sum_probs=55.2
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 9 KTDKATILSDVVRMMEQLRTEAQKLKQSTED--LQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 9 K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~--L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
-.|...=..|.-.=|+.|+.+.++|.+-.++ =-+++-++..|.++.|.|...++.++..|++++..
T Consensus 127 ~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 127 SEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 4566666778888899999999998885442 35667889999999999999999999999999987
No 455
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=72.14 E-value=6.4 Score=35.48 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 032660 47 LKAEKNELRDEKQRLKADK 65 (136)
Q Consensus 47 L~~EKnELrdEk~~Lk~ek 65 (136)
|+.|+.-++||.+.|+.++
T Consensus 279 l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 279 LKQERDHLQEEIQLLERQI 297 (511)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 456
>PLN02320 seryl-tRNA synthetase
Probab=72.01 E-value=28 Score=32.16 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=10.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHhc
Q 032660 53 ELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 53 ELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
+|.+|-..|+.++..||.+++.+
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~ 156 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKL 156 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555544443
No 457
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=71.99 E-value=23 Score=28.20 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 41 QEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 41 ~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
.+++..++.|.+++.+.....+.+-+.+-..++
T Consensus 142 ~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k 174 (216)
T cd07627 142 QEKLNSLLSELEEAERRASELKKEFEEVSELIK 174 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777776666666665554443
No 458
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=71.91 E-value=4.6 Score=26.12 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=9.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q 032660 33 LKQSTEDLQEKIKELKAEKNEL 54 (136)
Q Consensus 33 Lk~~n~~L~ee~~~L~~EKnEL 54 (136)
++.++.+++.+++.++.|.++|
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444443
No 459
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.90 E-value=25 Score=33.59 Aligned_cols=56 Identities=23% Similarity=0.459 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHH------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032660 13 ATILSDVVRMMEQ------------LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 13 AsIL~DAir~lkq------------Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
-.+|++|++++.. +...+..|+.+.+.-.++++++..|++.|++.-..|...+|++
T Consensus 538 l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 538 LELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888776642 2223334555666666666666666666655555554444443
No 460
>PRK10865 protein disaggregation chaperone; Provisional
Probab=71.89 E-value=30 Score=33.41 Aligned_cols=17 Identities=35% Similarity=0.354 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 032660 20 VRMMEQLRTEAQKLKQS 36 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~ 36 (136)
-+.+.+|..|++.|+.+
T Consensus 416 er~l~~L~~E~e~l~~e 432 (857)
T PRK10865 416 DRRIIQLKLEQQALMKE 432 (857)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555555555443
No 461
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.86 E-value=22 Score=36.55 Aligned_cols=57 Identities=30% Similarity=0.450 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHH--------HHHHH---HHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhc
Q 032660 19 VVRMMEQLRTEAQKLKQSTED--------LQEKI---KELKAEKNELRDEKQR-LKADKEKLEQQVKAM 75 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~--------L~ee~---~~L~~EKnELrdEk~~-Lk~eke~Le~qlk~~ 75 (136)
+.|++++||.|+++|+...+. |+|.+ ..|-.|.+---|||.+ ++..-..++.+|..|
T Consensus 362 narvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~~ 430 (1714)
T KOG0241|consen 362 NARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLESM 430 (1714)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999887665 33333 3344444444455543 333333444555554
No 462
>PHA00489 scaffolding protein
Probab=71.85 E-value=18 Score=27.03 Aligned_cols=45 Identities=27% Similarity=0.396 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
+-+..|.|||.-.-..-.+++.|.+....|++||..|.--|+.|=
T Consensus 24 ErTeaLqqlr~~ygSf~sEy~elT~a~eKl~aek~DLivsNskLF 68 (101)
T PHA00489 24 ERTEALQQLRESYGSFHSEYEELTEALEKLTAEKEDLIVSNSKLF 68 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 445667777777777777777777777777777777776666653
No 463
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=71.65 E-value=13 Score=34.44 Aligned_cols=29 Identities=24% Similarity=0.523 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 032660 49 AEKNELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 49 ~EKnELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
+.|+..+.-+..|+++++.++++++.+..
T Consensus 230 ~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 230 ADKQKIKSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 44444555556666677777777766543
No 464
>PTZ00464 SNF-7-like protein; Provisional
Probab=71.65 E-value=37 Score=27.79 Aligned_cols=31 Identities=10% Similarity=0.288 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 032660 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKEL 47 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L 47 (136)
.-+.||| +.||..+..|.+.+..|..+....
T Consensus 14 ~t~~d~~---~~l~~r~~~l~kKi~~ld~E~~~a 44 (211)
T PTZ00464 14 PTLEDAS---KRIGGRSEVVDARINKIDAELMKL 44 (211)
T ss_pred CCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477877 777777777777777777664443
No 465
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=71.52 E-value=12 Score=27.27 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 032660 42 EKIKELKAEKNELRDEKQ 59 (136)
Q Consensus 42 ee~~~L~~EKnELrdEk~ 59 (136)
++++.|+.|..+|+.|+.
T Consensus 78 ~ei~~L~~el~~L~~E~d 95 (121)
T PRK09413 78 KQIKELQRLLGKKTMENE 95 (121)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 466
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=71.51 E-value=38 Score=31.71 Aligned_cols=56 Identities=14% Similarity=0.332 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
=++-+....+.+....+++..|.......+.+|.-+.+|...++..+.+||.+|..
T Consensus 425 Lt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T 480 (518)
T PF10212_consen 425 LTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET 480 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444556666667777777777777777777777777777777777766554
No 467
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=71.50 E-value=25 Score=26.41 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 032660 46 ELKAEKNELRDEKQ 59 (136)
Q Consensus 46 ~L~~EKnELrdEk~ 59 (136)
.|+.+..+++++..
T Consensus 149 ~l~~~i~~~e~~~~ 162 (218)
T cd07596 149 ELEEELEEAESALE 162 (218)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 468
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=71.45 E-value=23 Score=32.67 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEK 51 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EK 51 (136)
.+.++.++++|.++++.|++++.+|..+.
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l 586 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKL 586 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555566666666666666665554443
No 469
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=71.41 E-value=36 Score=31.62 Aligned_cols=58 Identities=31% Similarity=0.530 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 17 SDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 17 ~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
+...+-|+++.+.+++|.+.+..+.+.+..-+.+-.+|-++-..|+.+++.++.+-+.
T Consensus 41 ~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~l 98 (618)
T PF06419_consen 41 SPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKL 98 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888888888887776666666667777777777666655443
No 470
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.38 E-value=22 Score=35.40 Aligned_cols=62 Identities=29% Similarity=0.406 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCCCC
Q 032660 19 VVRMMEQLRTEAQKLKQS-------TEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSAPSG 80 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~-------n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~~p~ 80 (136)
+-.++.+|....+++|.. .+.|.+..++|+.|..||.+|-+.+-+++..|..|+.-+..+=|
T Consensus 648 ~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 648 AEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555555555555544 44555566677777777777777777777777777766555433
No 471
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=71.37 E-value=49 Score=29.32 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 51 KNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 51 KnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+.++.+|...|+.++++++.+|+.+-
T Consensus 77 ~~~~~~e~~~l~~~l~~~e~~l~~~l 102 (359)
T PRK00591 77 REMAKEELKELEERLEELEEELKILL 102 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666788899999999999888643
No 472
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.16 E-value=19 Score=34.10 Aligned_cols=44 Identities=25% Similarity=0.419 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032660 20 VRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 20 ir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
.-||+++.+.-+.+....+.|.+|+.....|..-|+.++..||.
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566665554444444444444444444444444444444443
No 473
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=71.07 E-value=16 Score=35.23 Aligned_cols=45 Identities=18% Similarity=0.316 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
+||.+++.+|-.+++-|+.|....++-|--|.+.+..|+.|+.++
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~ 369 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKA 369 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666666665555554444444444444444333
No 474
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=70.98 E-value=35 Score=32.95 Aligned_cols=62 Identities=23% Similarity=0.374 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMSA 77 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~~ 77 (136)
..|+-+-+.+|+.+.++..+..+.++..+.++..|..-++.-..+|..|.++|...+..+..
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35777888899999999999999999999999999888888888999999999988888654
No 475
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=70.96 E-value=31 Score=29.83 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 26 LRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 26 Lr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
|...+..|+.++....-+...+|.....|+.|...|+.++.....-++-
T Consensus 124 ~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 124 LEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455554444444555555566666666666666666666554
No 476
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=70.96 E-value=19 Score=27.24 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=8.5
Q ss_pred HHHHHHhccCCC
Q 032660 68 LEQQVKAMSAPS 79 (136)
Q Consensus 68 Le~qlk~~~~~p 79 (136)
++-.+++|++.|
T Consensus 70 veRkmr~Les~p 81 (109)
T PF11690_consen 70 VERKMRALESHP 81 (109)
T ss_pred HHHHHHhccCCh
Confidence 367777777766
No 477
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=70.90 E-value=1.3 Score=32.28 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 032660 54 LRDEKQRLKADKEKLEQQV 72 (136)
Q Consensus 54 LrdEk~~Lk~eke~Le~ql 72 (136)
.+++...|+.++++++.++
T Consensus 183 ~~~~l~~l~~~l~~~~~~i 201 (202)
T PF13476_consen 183 KQKELEQLEEELEKLEKEI 201 (202)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3344445555555555544
No 478
>PRK14163 heat shock protein GrpE; Provisional
Probab=70.86 E-value=14 Score=30.59 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Q 032660 44 IKELKAEKNELRDEKQRLKADKEKL 68 (136)
Q Consensus 44 ~~~L~~EKnELrdEk~~Lk~eke~L 68 (136)
+..|+.|..+|+|...++.+|.+++
T Consensus 49 l~~l~~e~~el~d~~lR~~AEfeN~ 73 (214)
T PRK14163 49 LDQVRTALGERTADLQRLQAEYQNY 73 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444433
No 479
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=70.77 E-value=14 Score=35.08 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032660 14 TILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 14 sIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
-|..+++++|+|.-....+.-.-.+.. .+.+-|++|..-||+|++.|+.
T Consensus 623 dirNl~~ell~Qfhm~~~Ems~llery-~eNe~l~aelk~lreenq~lr~ 671 (673)
T KOG4378|consen 623 DIRNLALELLLQFHMFMREMSRLLERY-NENEMLKAELKFLREENQTLRC 671 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhhhhhhc
Confidence 467788888888877655443322222 2234477888888888887753
No 480
>COG1422 Predicted membrane protein [Function unknown]
Probab=70.76 E-value=16 Score=30.28 Aligned_cols=26 Identities=12% Similarity=0.335 Sum_probs=13.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Q 032660 28 TEAQKLKQSTEDLQEKIKELKAEKNE 53 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnE 53 (136)
.+.++++++-..+|++.++.+.++|+
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~ 97 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDM 97 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 44555555555555555555554443
No 481
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=70.72 E-value=23 Score=34.88 Aligned_cols=48 Identities=21% Similarity=0.447 Sum_probs=35.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 28 TEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 28 ~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.|-..-.+..+.|.++...++....+++-+|-+|..+||+|-+++++|
T Consensus 209 kermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL 256 (916)
T KOG0249|consen 209 KERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQL 256 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 344444556667777778888888888888888888888888777765
No 482
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=70.65 E-value=53 Score=26.26 Aligned_cols=56 Identities=20% Similarity=0.407 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
+++.-|.+=+....+|..-|.-|.+........-..|.+|..+|..+-+++..+|.
T Consensus 64 ~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 64 EALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34433443344455566677778777777777777777777777777666655554
No 483
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=70.62 E-value=31 Score=23.60 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 032660 22 MMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRD 56 (136)
Q Consensus 22 ~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrd 56 (136)
.|.++...++.|..+...|.+.++.+..+-.++.+
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888777777766
No 484
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=70.60 E-value=26 Score=32.54 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 23 MEQLRTEAQKLKQSTED-LQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~-L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
|.+|+.+++.|+..... +..-+..+..+...++.....|+.++.++++++..++
T Consensus 318 v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~ 372 (754)
T TIGR01005 318 VVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAG 372 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
No 485
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=70.57 E-value=25 Score=32.21 Aligned_cols=55 Identities=22% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH------------------------------------HHHHHHHHHHHHHHHHHhHHH
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEK------------------------------------IKELKAEKNELRDEKQRLKAD 64 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee------------------------------------~~~L~~EKnELrdEk~~Lk~e 64 (136)
.+...||.-|++--.||+.|+-. .+-.-.||+-||.|+-.|..|
T Consensus 285 elar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~ke 364 (442)
T PF06637_consen 285 ELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKE 364 (442)
T ss_pred HHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhc
Q 032660 65 KEKLEQQVKAM 75 (136)
Q Consensus 65 ke~Le~qlk~~ 75 (136)
.|..+.|+..+
T Consensus 365 Leekkreleql 375 (442)
T PF06637_consen 365 LEEKKRELEQL 375 (442)
T ss_pred HHHHHHHHHHH
No 486
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=70.57 E-value=32 Score=34.96 Aligned_cols=57 Identities=26% Similarity=0.405 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.-|+-.-.|.++.++|...++.|++++..+...+-+|++.--.|..|.++|+.+...
T Consensus 398 e~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t 454 (1195)
T KOG4643|consen 398 ELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETST 454 (1195)
T ss_pred HHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556667777888888888888888888888888888888888888887766
No 487
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=70.40 E-value=32 Score=33.44 Aligned_cols=58 Identities=22% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
|..+-..+.+.+.++.++.++...+..++.+|+..-.-..-+...|...||+|+.+|+
T Consensus 352 le~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ 409 (775)
T PF10174_consen 352 LEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLR 409 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=70.32 E-value=25 Score=30.73 Aligned_cols=49 Identities=29% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 032660 19 VVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEK 67 (136)
Q Consensus 19 Air~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~ 67 (136)
|+||=+.=|.|-+.|-.+.+.|+.+.++||..-.+|.-|.+.||.=+..
T Consensus 239 AtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 239 ATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=70.30 E-value=40 Score=28.78 Aligned_cols=62 Identities=26% Similarity=0.366 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 032660 12 KATILSDVVRMMEQLRTEAQKLKQ-STEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVK 73 (136)
Q Consensus 12 KAsIL~DAir~lkqLr~e~~~Lk~-~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk 73 (136)
|-.||+.++.-.-+-.-.+=..+. +|..++.++.--..+.++|.++...|++|.+.|..+.+
T Consensus 162 ~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 162 KEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 490
>PRK14146 heat shock protein GrpE; Provisional
Probab=70.28 E-value=14 Score=30.45 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 35 QSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 35 ~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.....|++++..|+.+..+|+|...++.+|.++.......
T Consensus 54 ~~~~~l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~k 93 (215)
T PRK14146 54 ETETSLQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQ 93 (215)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=70.27 E-value=19 Score=36.32 Aligned_cols=54 Identities=30% Similarity=0.451 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAMS 76 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~~ 76 (136)
+..|+.++++...+++..+..+..++.|..++..+....+..+++||.++..|.
T Consensus 652 ~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~ 705 (1072)
T KOG0979|consen 652 LRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLD 705 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
No 492
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=70.25 E-value=21 Score=31.87 Aligned_cols=46 Identities=22% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRL 61 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~L 61 (136)
+.+-..++.-.+.+..+|..+...|..++++++.+.++|+.+...|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 126 LKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 493
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=70.22 E-value=40 Score=25.21 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 032660 23 MEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKA 74 (136)
Q Consensus 23 lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~ 74 (136)
.+++..+++...+.++.++...+.|..==....+|....|+++++|...|..
T Consensus 9 ~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~a 60 (125)
T PF03245_consen 9 RDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAA 60 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHc
No 494
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=70.22 E-value=7.7 Score=36.84 Aligned_cols=42 Identities=36% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLK 62 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk 62 (136)
+|+--|...+++|-.+|+.|..|.-.|+....+|.-|+..||
T Consensus 302 Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~k 343 (655)
T KOG4343|consen 302 EYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLK 343 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccc
No 495
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=70.20 E-value=18 Score=32.73 Aligned_cols=52 Identities=27% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.||+.+-++|+++.-..++=+-..+.+.+-|..=..+++.|.-+||-||.++
T Consensus 102 ~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l 153 (401)
T PF06785_consen 102 EQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDAL 153 (401)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHH
No 496
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=70.19 E-value=30 Score=34.91 Aligned_cols=58 Identities=22% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 18 DVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 18 DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
.....|++|-.|++-+++....+++..-..-..+++|.+++..||..+.+-..++..+
T Consensus 445 ~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~ 502 (1041)
T KOG0243|consen 445 EMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESL 502 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=70.16 E-value=37 Score=30.86 Aligned_cols=60 Identities=23% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 032660 16 LSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKADKEKLEQQVKAM 75 (136)
Q Consensus 16 L~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~eke~Le~qlk~~ 75 (136)
|..+..=+..|+..+..|+.+.+....++..++..-.........|+.++.++..+|..+
T Consensus 297 L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~ 356 (522)
T PF05701_consen 297 LEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAA 356 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHH
No 498
>PRK01203 prefoldin subunit alpha; Provisional
Probab=70.15 E-value=17 Score=27.99 Aligned_cols=40 Identities=10% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 032660 24 EQLRTEAQKLKQSTEDLQEKIKELKAEKNELRDEKQRLKA 63 (136)
Q Consensus 24 kqLr~e~~~Lk~~n~~L~ee~~~L~~EKnELrdEk~~Lk~ 63 (136)
.+|..|++-|+++.+.|++++..|+...+++.+-+..|+.
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 499
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=70.08 E-value=56 Score=29.04 Aligned_cols=78 Identities=24% Similarity=0.352 Sum_probs=0.0
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHhccCC
Q 032660 3 EPGRPPKTDKATILSDVVRMMEQLRTEAQKLKQSTEDLQEKIKELKA----EKNELRDEKQRLKADKEKLEQQVKAMSAP 78 (136)
Q Consensus 3 eP~rp~K~DKAsIL~DAir~lkqLr~e~~~Lk~~n~~L~ee~~~L~~----EKnELrdEk~~Lk~eke~Le~qlk~~~~~ 78 (136)
+|+-.....|+..+.--..-|+.+-...++++.....+.+-..-++. -+.++.+|...|+.++++++.+|+.+-.+
T Consensus 25 ~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~~D~e~~~~a~~e~~~l~~~~~~~e~~l~~~ll~ 104 (360)
T TIGR00019 25 DPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQLKVLLLP 104 (360)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q ss_pred CC
Q 032660 79 SG 80 (136)
Q Consensus 79 p~ 80 (136)
++
T Consensus 105 ~~ 106 (360)
T TIGR00019 105 KD 106 (360)
T ss_pred CC
No 500
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=70.08 E-value=27 Score=32.84 Aligned_cols=50 Identities=28% Similarity=0.412 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHH
Q 032660 21 RMMEQLRTEAQKLKQSTEDLQEKIK-ELKAEKNELRDEKQRLKADKEKLEQ 70 (136)
Q Consensus 21 r~lkqLr~e~~~Lk~~n~~L~ee~~-~L~~EKnELrdEk~~Lk~eke~Le~ 70 (136)
+.+++|+.++++++++.+.++++++ .++....+|+.-...++.++++.+.
T Consensus 229 e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~ 279 (759)
T PF01496_consen 229 EAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAWYEYLRKEKEIYEA 279 (759)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!