BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 032663
         (136 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Z90|A Chain A, Crystal Structure Of The Second Dps From Mycobacterium
           Smegmatis
 pdb|2Z90|B Chain B, Crystal Structure Of The Second Dps From Mycobacterium
           Smegmatis
 pdb|2Z90|C Chain C, Crystal Structure Of The Second Dps From Mycobacterium
           Smegmatis
 pdb|2Z90|D Chain D, Crystal Structure Of The Second Dps From Mycobacterium
           Smegmatis
          Length = 161

 Score = 31.2 bits (69), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 12  SAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKI---VNGDNNVNAKELHAVYVGKS 68
           +A   LP FP   RST+    L+ T   A  D  R++   V+ ++   A  LH +  G  
Sbjct: 89  AATTTLPEFPAFERSTADVVDLITTRINATVDTIRRVHDAVDAEDPSTADLLHGLIDGLE 148

Query: 69  RRQYYLTSD 77
           ++ + + S+
Sbjct: 149 KQAWLIRSE 157


>pdb|4GDI|A Chain A, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
           YELLOW-Shouldered BatGUATEMALA1642009
 pdb|4GDI|B Chain B, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
           YELLOW-Shouldered BatGUATEMALA1642009
 pdb|4GDI|C Chain C, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
           YELLOW-Shouldered BatGUATEMALA1642009
 pdb|4GDI|D Chain D, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
           YELLOW-Shouldered BatGUATEMALA1642009
 pdb|4GDI|E Chain E, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
           YELLOW-Shouldered BatGUATEMALA1642009
 pdb|4GDI|F Chain F, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
           YELLOW-Shouldered BatGUATEMALA1642009
          Length = 373

 Score = 27.3 bits (59), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 90  RSGGFDDEGEVVVACEVVLFEHLLWMLESSTGTQLGSMQELVDF 133
           RSG F  +G+++  C+ + F    W+        LG +QEL  F
Sbjct: 320 RSGFFQPKGDLISGCQRICF----WLEIEDQTVGLGMIQELSTF 359


>pdb|4FVK|A Chain A, Structural And Functional Characterization Of
           Neuraminidase-Like Molecule N10 Derived From Bat
           Influenza A Virus
 pdb|4FVK|B Chain B, Structural And Functional Characterization Of
           Neuraminidase-Like Molecule N10 Derived From Bat
           Influenza A Virus
          Length = 376

 Score = 27.3 bits (59), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 90  RSGGFDDEGEVVVACEVVLFEHLLWMLESSTGTQLGSMQELVDF 133
           RSG F  +G+++  C+ + F    W+        LG +QEL  F
Sbjct: 323 RSGFFQPKGDLISGCQRICF----WLEIEDQTVGLGMIQELSTF 362


>pdb|4GEZ|A Chain A, Structure Of A Neuraminidase-Like Protein From
           ABATGUATEMALA1642009
 pdb|4GEZ|B Chain B, Structure Of A Neuraminidase-Like Protein From
           ABATGUATEMALA1642009
 pdb|4GEZ|C Chain C, Structure Of A Neuraminidase-Like Protein From
           ABATGUATEMALA1642009
 pdb|4GEZ|D Chain D, Structure Of A Neuraminidase-Like Protein From
           ABATGUATEMALA1642009
 pdb|4GEZ|E Chain E, Structure Of A Neuraminidase-Like Protein From
           ABATGUATEMALA1642009
 pdb|4GEZ|F Chain F, Structure Of A Neuraminidase-Like Protein From
           ABATGUATEMALA1642009
 pdb|4GEZ|G Chain G, Structure Of A Neuraminidase-Like Protein From
           ABATGUATEMALA1642009
 pdb|4GEZ|H Chain H, Structure Of A Neuraminidase-Like Protein From
           ABATGUATEMALA1642009
 pdb|4GEZ|I Chain I, Structure Of A Neuraminidase-Like Protein From
           ABATGUATEMALA1642009
 pdb|4GEZ|J Chain J, Structure Of A Neuraminidase-Like Protein From
           ABATGUATEMALA1642009
 pdb|4GEZ|K Chain K, Structure Of A Neuraminidase-Like Protein From
           ABATGUATEMALA1642009
 pdb|4GEZ|L Chain L, Structure Of A Neuraminidase-Like Protein From
           ABATGUATEMALA1642009
          Length = 378

 Score = 27.3 bits (59), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 90  RSGGFDDEGEVVVACEVVLFEHLLWMLESSTGTQLGSMQELVDF 133
           RSG F  +G+++  C+ + F    W+        LG +QEL  F
Sbjct: 325 RSGFFQPKGDLISGCQRICF----WLEIEDQTVGLGMIQELSTF 364


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,895,146
Number of Sequences: 62578
Number of extensions: 145877
Number of successful extensions: 260
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 257
Number of HSP's gapped (non-prelim): 7
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)