Query 032663
Match_columns 136
No_of_seqs 175 out of 696
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 04:21:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032663.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/032663hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03090 auxin-responsive fami 100.0 2.2E-37 4.7E-42 224.0 9.8 93 3-116 8-103 (104)
2 PF02519 Auxin_inducible: Auxi 100.0 3.3E-32 7.1E-37 195.6 9.5 64 54-117 34-100 (100)
3 PLN03220 uncharacterized prote 100.0 1.6E-29 3.5E-34 182.9 8.9 84 8-114 10-101 (105)
4 PLN03219 uncharacterized prote 100.0 4.8E-28 1E-32 175.9 9.3 65 51-115 34-104 (108)
5 PF02214 BTB_2: BTB/POZ domain 95.0 0.028 6E-07 38.5 3.2 72 62-135 2-85 (94)
6 smart00225 BTB Broad-Complex, 63.4 16 0.00034 22.6 3.9 69 63-134 4-80 (90)
7 PF11822 DUF3342: Domain of un 58.7 25 0.00055 30.2 5.4 54 68-122 12-70 (317)
8 PF00651 BTB: BTB/POZ domain; 57.6 16 0.00035 24.4 3.4 58 61-119 13-74 (111)
9 smart00666 PB1 PB1 domain. Pho 47.4 37 0.0008 22.1 3.8 51 63-118 6-70 (81)
10 KOG2723 Uncharacterized conser 42.4 80 0.0017 25.8 5.7 76 58-135 8-94 (221)
11 KOG2716 Polymerase delta-inter 40.3 65 0.0014 26.5 4.9 65 62-129 8-77 (230)
12 PF12663 DUF3788: Protein of u 39.7 39 0.00085 25.0 3.3 61 56-117 66-130 (133)
13 PF14317 YcxB: YcxB-like prote 36.6 82 0.0018 18.7 3.9 32 57-89 28-59 (62)
14 PRK02899 adaptor protein; Prov 35.6 32 0.00068 27.3 2.3 21 82-102 39-62 (197)
15 KOG1665 AFH1-interacting prote 33.5 51 0.0011 27.8 3.3 40 95-134 50-94 (302)
16 cd05992 PB1 The PB1 domain is 33.5 90 0.002 20.0 4.0 53 62-118 4-70 (81)
17 PF12058 DUF3539: Protein of u 30.9 8.5 0.00018 27.4 -1.4 16 77-92 4-19 (88)
18 KOG3745 Exocyst subunit - Sec1 30.0 44 0.00095 32.1 2.6 54 81-134 659-715 (763)
19 COG5431 Uncharacterized metal- 29.4 66 0.0014 23.9 2.9 61 57-118 31-103 (117)
20 PRK02315 adaptor protein; Prov 29.0 52 0.0011 26.6 2.6 22 81-102 38-62 (233)
21 PF10945 DUF2629: Protein of u 27.0 42 0.00091 21.0 1.3 19 4-22 23-41 (44)
22 KOG2813 Predicted molecular ch 25.7 62 0.0013 28.5 2.6 54 61-115 274-330 (406)
23 cd06397 PB1_UP1 Uncharacterize 24.5 2E+02 0.0042 20.2 4.5 46 62-111 4-63 (82)
24 PF14788 EF-hand_10: EF hand; 22.3 64 0.0014 20.6 1.6 12 124-135 37-48 (51)
25 COG0623 FabI Enoyl-[acyl-carri 21.6 1.1E+02 0.0025 25.6 3.3 37 78-116 39-75 (259)
26 PF00017 SH2: SH2 domain; Int 21.3 51 0.0011 21.0 1.0 13 122-134 65-77 (77)
27 COG1759 5-formaminoimidazole-4 20.6 49 0.0011 29.0 1.0 66 54-119 88-186 (361)
No 1
>PLN03090 auxin-responsive family protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=224.02 Aligned_cols=93 Identities=28% Similarity=0.468 Sum_probs=81.7
Q ss_pred hhhhHHHHHHHHHhcCCCccccCCcccCcccccccccccccccccccCCCCCCCCCceEEEEEcCcceEEEEeccccCCH
Q 032663 3 KVGKLTKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKELHAVYVGKSRRQYYLTSDVICHP 82 (136)
Q Consensus 3 ki~~i~kLk~~lkKw~~~a~~~r~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~vpkG~~~VyVG~e~~RfvVp~~~L~hp 82 (136)
||.++++|||+||||+++++.+... ....+.+||+||||||||++++||+||++|||||
T Consensus 8 ki~~~~~~kq~l~r~~s~~~~~~~~---------------------~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP 66 (104)
T PLN03090 8 KLTQTAMLKQILKRCSSLGKKQGYD---------------------EDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHP 66 (104)
T ss_pred chhHHHHHHHHHHHHHHhcccCCcc---------------------cccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCH
Confidence 7889999999999999997654210 0124668999999999999999999999999999
Q ss_pred HHHHHHHHhC-C--CCCCCcEEEcCchHHHHHHHHHH
Q 032663 83 LFQELIERSG-G--FDDEGEVVVACEVVLFEHLLWML 116 (136)
Q Consensus 83 ~F~~LL~~ae-e--f~~~G~l~iPCd~~~Fe~ll~~l 116 (136)
+|++||++|| | |+++|+|+||||+++|++++|+|
T Consensus 67 ~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i 103 (104)
T PLN03090 67 EFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI 103 (104)
T ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence 9999999999 3 56889999999999999999998
No 2
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=99.97 E-value=3.3e-32 Score=195.64 Aligned_cols=64 Identities=48% Similarity=0.941 Sum_probs=60.8
Q ss_pred CCCCCceEEEEEcCcceEEEEeccccCCHHHHHHHHHhCC---CCCCCcEEEcCchHHHHHHHHHHh
Q 032663 54 NVNAKELHAVYVGKSRRQYYLTSDVICHPLFQELIERSGG---FDDEGEVVVACEVVLFEHLLWMLE 117 (136)
Q Consensus 54 ~~vpkG~~~VyVG~e~~RfvVp~~~L~hp~F~~LL~~aee---f~~~G~l~iPCd~~~Fe~ll~~l~ 117 (136)
.++|+|||+||||++++||+||++|||||+|++||++|+| |+++|+|+||||+++||+++|+|+
T Consensus 34 ~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le 100 (100)
T PF02519_consen 34 SDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE 100 (100)
T ss_pred CCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence 6789999999999999999999999999999999999994 568999999999999999999985
No 3
>PLN03220 uncharacterized protein; Provisional
Probab=99.96 E-value=1.6e-29 Score=182.87 Aligned_cols=84 Identities=23% Similarity=0.469 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCCccccCCcccCcccccccccccccccccccCCCCCCCCCceEEEEEcC----cceEEEEeccccCCHH
Q 032663 8 TKLKSAMKKLPSFPRLSRSTSINCSLMFTSAAADSDHHRKIVNGDNNVNAKELHAVYVGK----SRRQYYLTSDVICHPL 83 (136)
Q Consensus 8 ~kLk~~lkKw~~~a~~~r~~~~~~~~~~~s~s~~~~~~~~~~~~~~~~vpkG~~~VyVG~----e~~RfvVp~~~L~hp~ 83 (136)
.+.||++|+++ ++...+.. +..+.+||||||+||||+ |++||+||++|||||.
T Consensus 10 ~~~k~~~~~~~-~~~~~~~~----------------------~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~ 66 (105)
T PLN03220 10 NATKQILKLNS-LANRNRTS----------------------SSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPS 66 (105)
T ss_pred HHHHHHHHHHh-hccccccc----------------------ccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChH
Confidence 35699999998 55433221 012457999999999997 5899999999999999
Q ss_pred HHHHHHHhCC---CCC-CCcEEEcCchHHHHHHHH
Q 032663 84 FQELIERSGG---FDD-EGEVVVACEVVLFEHLLW 114 (136)
Q Consensus 84 F~~LL~~aee---f~~-~G~l~iPCd~~~Fe~ll~ 114 (136)
|++||++||| |++ +|+|+||||++.|++++.
T Consensus 67 F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~ 101 (105)
T PLN03220 67 FKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA 101 (105)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence 9999999993 566 699999999999999985
No 4
>PLN03219 uncharacterized protein; Provisional
Probab=99.95 E-value=4.8e-28 Score=175.95 Aligned_cols=65 Identities=28% Similarity=0.562 Sum_probs=58.6
Q ss_pred CCCCCCCCceEEEEEcC--cceEEEEeccccCCHHHHHHHHHhCC---CCC-CCcEEEcCchHHHHHHHHH
Q 032663 51 GDNNVNAKELHAVYVGK--SRRQYYLTSDVICHPLFQELIERSGG---FDD-EGEVVVACEVVLFEHLLWM 115 (136)
Q Consensus 51 ~~~~~vpkG~~~VyVG~--e~~RfvVp~~~L~hp~F~~LL~~aee---f~~-~G~l~iPCd~~~Fe~ll~~ 115 (136)
+.+.+||||||+||||+ |++||+||++|||||+|++||++||| |++ +|+|+||||++.|++||..
T Consensus 34 ~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~ 104 (108)
T PLN03219 34 TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS 104 (108)
T ss_pred CCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence 34568999999999997 59999999999999999999999993 555 6999999999999999875
No 5
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=95.00 E-value=0.028 Score=38.46 Aligned_cols=72 Identities=24% Similarity=0.346 Sum_probs=51.8
Q ss_pred EEEEcCcceEEEEeccccC-C--HHHHHHHHHh-C-C-CCCCCcEEEcCchHHHHHHHHHHhcC-C--CC---CccCHHH
Q 032663 62 AVYVGKSRRQYYLTSDVIC-H--PLFQELIERS-G-G-FDDEGEVVVACEVVLFEHLLWMLESS-T--GT---QLGSMQE 129 (136)
Q Consensus 62 ~VyVG~e~~RfvVp~~~L~-h--p~F~~LL~~a-e-e-f~~~G~l~iPCd~~~Fe~ll~~l~~~-~--~~---~~~sl~e 129 (136)
.+=||. ++|.++.+.|. + ..|..|+... . . -+.+|.+.|.++...|++||..++.+ . .+ ....+.+
T Consensus 2 ~lNVGG--~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~ 79 (94)
T PF02214_consen 2 RLNVGG--TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTGGKLPIPDEICLEELLE 79 (94)
T ss_dssp EEEETT--EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHTSSB---TTS-HHHHHH
T ss_pred EEEECC--EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhcCccCCCCchhHHHHHH
Confidence 345774 89999998887 4 4788888864 2 2 34679999999999999999999993 2 11 2344666
Q ss_pred HHhhcc
Q 032663 130 LVDFYT 135 (136)
Q Consensus 130 l~~fy~ 135 (136)
-++||.
T Consensus 80 Ea~fy~ 85 (94)
T PF02214_consen 80 EAEFYG 85 (94)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 777874
No 6
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=63.39 E-value=16 Score=22.64 Aligned_cols=69 Identities=20% Similarity=0.329 Sum_probs=46.4
Q ss_pred EEEcCcceEEEEeccccC--CHHHHHHHHHhCCCCCCCcEEEc-CchHHHHHHHHHHhcCCCCC-----ccCHHHHHhhc
Q 032663 63 VYVGKSRRQYYLTSDVIC--HPLFQELIERSGGFDDEGEVVVA-CEVVLFEHLLWMLESSTGTQ-----LGSMQELVDFY 134 (136)
Q Consensus 63 VyVG~e~~RfvVp~~~L~--hp~F~~LL~~aeef~~~G~l~iP-Cd~~~Fe~ll~~l~~~~~~~-----~~sl~el~~fy 134 (136)
+-||+ ++|-+.-.+|. .|.|+.++...........+.++ .+...|+.++..+..+ ... ...+-++++||
T Consensus 4 i~v~~--~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~-~~~~~~~~~~~l~~~a~~~ 80 (90)
T smart00225 4 LVVGG--KKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTG-KLDLPEENVEELLELADYL 80 (90)
T ss_pred EEECC--EEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCc-eeecCHHHHHHHHHHHHHH
Confidence 45664 78888877775 47889998754432234567665 6999999999999877 321 23344566665
No 7
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=58.73 E-value=25 Score=30.25 Aligned_cols=54 Identities=22% Similarity=0.441 Sum_probs=41.3
Q ss_pred cceEEEEeccccC--CHHHHHHHHH---hCCCCCCCcEEEcCchHHHHHHHHHHhcCCCC
Q 032663 68 SRRQYYLTSDVIC--HPLFQELIER---SGGFDDEGEVVVACEVVLFEHLLWMLESSTGT 122 (136)
Q Consensus 68 e~~RfvVp~~~L~--hp~F~~LL~~---aeef~~~G~l~iPCd~~~Fe~ll~~l~~~~~~ 122 (136)
.+|-|.-|.+.|- ..-|++.|.. ...--.+=.|.|.||+..|+.++.-++.. .|
T Consensus 12 ~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~-~p 70 (317)
T PF11822_consen 12 EKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGE-PP 70 (317)
T ss_pred cceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcC-CC
Confidence 4678999988884 4679999976 22222345799999999999999999887 44
No 8
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=57.61 E-value=16 Score=24.41 Aligned_cols=58 Identities=21% Similarity=0.383 Sum_probs=41.9
Q ss_pred EEEEEcCcceEEEEecccc--CCHHHHHHHHHhC-CCCCCCcEEEc-CchHHHHHHHHHHhcC
Q 032663 61 HAVYVGKSRRQYYLTSDVI--CHPLFQELIERSG-GFDDEGEVVVA-CEVVLFEHLLWMLESS 119 (136)
Q Consensus 61 ~~VyVG~e~~RfvVp~~~L--~hp~F~~LL~~ae-ef~~~G~l~iP-Cd~~~Fe~ll~~l~~~ 119 (136)
+.+.||+ .++|-+.-.+| ..|.|+.++.... .-.....|.++ ++...|+.++..+-.+
T Consensus 13 ~~i~v~d-~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~ 74 (111)
T PF00651_consen 13 VTIRVGD-GKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTG 74 (111)
T ss_dssp EEEEETT-TEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHS
T ss_pred EEEEECC-CEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCC
Confidence 4566776 68999998888 4599999998882 21111246655 7899999999998765
No 9
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=47.36 E-value=37 Score=22.06 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=34.4
Q ss_pred EEEcCcceEEEEeccccCCHHHHHHHHHhCC-C------------CCCC-cEEEcCchHHHHHHHHHHhc
Q 032663 63 VYVGKSRRQYYLTSDVICHPLFQELIERSGG-F------------DDEG-EVVVACEVVLFEHLLWMLES 118 (136)
Q Consensus 63 VyVG~e~~RfvVp~~~L~hp~F~~LL~~aee-f------------~~~G-~l~iPCd~~~Fe~ll~~l~~ 118 (136)
|+-|++.+||.||. ...|.+|..+... | +.+| .++|.+|. .++.++.+...
T Consensus 6 ~~~~~~~~~~~~~~----~~s~~dL~~~i~~~~~~~~~~~~l~Y~Dedgd~v~l~sd~-Dl~~a~~~~~~ 70 (81)
T smart00666 6 LRYGGETRRLSVPR----DISFEDLRSKVAKRFGLDNQSFTLKYQDEDGDLVSLTSDE-DLEEAIEEYDS 70 (81)
T ss_pred EEECCEEEEEEECC----CCCHHHHHHHHHHHhCCCCCCeEEEEECCCCCEEEecCHH-HHHHHHHHHHH
Confidence 34477799999986 6678888888662 1 1334 78888876 45556666554
No 10
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=42.43 E-value=80 Score=25.84 Aligned_cols=76 Identities=16% Similarity=0.217 Sum_probs=53.3
Q ss_pred CceEEEEEcCcceEEEEeccccCCHHHHHHHHHhCC-C----CCCCcEEEcCchHHHHHHHHHHhcCCCC------CccC
Q 032663 58 KELHAVYVGKSRRQYYLTSDVICHPLFQELIERSGG-F----DDEGEVVVACEVVLFEHLLWMLESSTGT------QLGS 126 (136)
Q Consensus 58 kG~~~VyVG~e~~RfvVp~~~L~hp~F~~LL~~aee-f----~~~G~l~iPCd~~~Fe~ll~~l~~~~~~------~~~s 126 (136)
.+++...||. .=|...+.-|-+-.=..|.++..+ . +..|...|.=|-.+|+|||..|+..... ....
T Consensus 8 ~~~v~lnvGG--~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fIDRDG~lFRyvL~~LRt~~l~lpe~f~e~~~ 85 (221)
T KOG2723|consen 8 PDVVELNVGG--AIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFIDRDGFLFRYVLDYLRTKALLLPEDFAEVER 85 (221)
T ss_pred CCceeeccCC--eEEEeeccceeechHHHHHhhcCCCCCccccccccEEEcCCcchHHHHHHHhcccccccchhhhhHHH
Confidence 4566777774 566666655555455666666663 2 2678899999999999999999884221 2456
Q ss_pred HHHHHhhcc
Q 032663 127 MQELVDFYT 135 (136)
Q Consensus 127 l~el~~fy~ 135 (136)
|-+.+|||.
T Consensus 86 L~rEA~f~~ 94 (221)
T KOG2723|consen 86 LVREAEFFQ 94 (221)
T ss_pred HHHHHHHHc
Confidence 888899985
No 11
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=40.28 E-value=65 Score=26.49 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=42.9
Q ss_pred EEEEcCcceEEEEeccccC--CHHHHHHHHHhCC--CCCCCcEEEcCchHHHHHHHHHHhcCCCCC-ccCHHH
Q 032663 62 AVYVGKSRRQYYLTSDVIC--HPLFQELIERSGG--FDDEGEVVVACEVVLFEHLLWMLESSTGTQ-LGSMQE 129 (136)
Q Consensus 62 ~VyVG~e~~RfvVp~~~L~--hp~F~~LL~~aee--f~~~G~l~iPCd~~~Fe~ll~~l~~~~~~~-~~sl~e 129 (136)
-..||. ..|.--.+-|- +-.|..+++---+ -+..|.|.|.=+.-.|+-||..|+.+ |.. .++.+|
T Consensus 8 kLnvGG--~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFIDRSpKHF~~ILNfmRdG-dv~LPe~~ke 77 (230)
T KOG2716|consen 8 KLNVGG--TIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFIDRSPKHFDTILNFMRDG-DVDLPESEKE 77 (230)
T ss_pred EEecCC--eEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEecCChhHHHHHHHhhhcc-cccCccchHH
Confidence 356764 46665544444 3445565554332 44679999999999999999999987 543 444444
No 12
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=39.69 E-value=39 Score=25.05 Aligned_cols=61 Identities=16% Similarity=0.212 Sum_probs=40.4
Q ss_pred CCCceEEEEE--cC-cceEEEEeccccCCHHHHHHHHHhCCCCCCCcEEEc-CchHHHHHHHHHHh
Q 032663 56 NAKELHAVYV--GK-SRRQYYLTSDVICHPLFQELIERSGGFDDEGEVVVA-CEVVLFEHLLWMLE 117 (136)
Q Consensus 56 vpkG~~~VyV--G~-e~~RfvVp~~~L~hp~F~~LL~~aeef~~~G~l~iP-Cd~~~Fe~ll~~l~ 117 (136)
+.+|+|.|-| |+ ++.-|.-- ..-=+|-.|++.+.+.-++.++.|.+. -+...|+.|..+|.
T Consensus 66 p~~g~F~~~iv~g~ke~~~~e~~-~~~~s~~~~~~~~~~~~~~~GkWl~~~V~~~~~l~Di~~Li~ 130 (133)
T PF12663_consen 66 PEEGYFTVMIVIGKKEREKFEEL-LPDLSPYVQELYDEAKTYGDGKWLMIEVRSEEDLEDIKKLIA 130 (133)
T ss_pred ecCCcEEEEEEECchHHHHHHHH-HhhcCHHHHHHHHhCCCCCCCcEEEEEeCChhhHHHHHHHHh
Confidence 4688887765 65 22222110 112367889999999888877888876 47778888888774
No 13
>PF14317 YcxB: YcxB-like protein
Probab=36.61 E-value=82 Score=18.66 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=24.8
Q ss_pred CCceEEEEEcCcceEEEEeccccCCHHHHHHHH
Q 032663 57 AKELHAVYVGKSRRQYYLTSDVICHPLFQELIE 89 (136)
Q Consensus 57 pkG~~~VyVG~e~~RfvVp~~~L~hp~F~~LL~ 89 (136)
-+.++.+|+++ ..-++||-+.++.-...++.+
T Consensus 28 ~~~~~~l~~~~-~~~~~iPk~~f~~~e~~~f~~ 59 (62)
T PF14317_consen 28 TKDYFYLYLGK-NQAFIIPKRAFSEEEKEEFRE 59 (62)
T ss_pred eCCEEEEEECC-CeEEEEEHHHCCHhHHHHHHH
Confidence 47788999987 599999999998555555543
No 14
>PRK02899 adaptor protein; Provisional
Probab=35.60 E-value=32 Score=27.29 Aligned_cols=21 Identities=29% Similarity=0.877 Sum_probs=16.6
Q ss_pred HHHHHHHHHhC---CCCCCCcEEE
Q 032663 82 PLFQELIERSG---GFDDEGEVVV 102 (136)
Q Consensus 82 p~F~~LL~~ae---ef~~~G~l~i 102 (136)
-+|.++|++|. +|..+|||+|
T Consensus 39 ~lF~~mm~Ea~~e~~F~~~~pl~~ 62 (197)
T PRK02899 39 QLFRDMMQEANKELGFEADGPIAV 62 (197)
T ss_pred HHHHHHHHHhhhccCcccCCeEEE
Confidence 46777799999 4888899875
No 15
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=33.50 E-value=51 Score=27.83 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=29.5
Q ss_pred CCCCcEEEcCchHHHHHHHHHHhcCC-----CCCccCHHHHHhhc
Q 032663 95 DDEGEVVVACEVVLFEHLLWMLESST-----GTQLGSMQELVDFY 134 (136)
Q Consensus 95 ~~~G~l~iPCd~~~Fe~ll~~l~~~~-----~~~~~sl~el~~fy 134 (136)
++.|..-|.-+...||+|+..|+.+. |+.-..+-|-++||
T Consensus 50 d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff 94 (302)
T KOG1665|consen 50 DKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFF 94 (302)
T ss_pred ccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHH
Confidence 36799999999999999998887763 22334455667776
No 16
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=33.47 E-value=90 Score=19.99 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=34.2
Q ss_pred EEEEcCcceEEEEeccccCCHHHHHHHHHhCC-C------------CCCC-cEEEcCchHHHHHHHHHHhc
Q 032663 62 AVYVGKSRRQYYLTSDVICHPLFQELIERSGG-F------------DDEG-EVVVACEVVLFEHLLWMLES 118 (136)
Q Consensus 62 ~VyVG~e~~RfvVp~~~L~hp~F~~LL~~aee-f------------~~~G-~l~iPCd~~~Fe~ll~~l~~ 118 (136)
-|+-+++.+||.+|. .++.|.+|..+-.. | +.+| .++|.+| ..|+.++....+
T Consensus 4 K~~~~~~~~~~~~~~---~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~d~v~l~sd-~Dl~~a~~~~~~ 70 (81)
T cd05992 4 KVKYGGEIRRFVVVS---RSISFEDLRSKIAEKFGLDAVSFKLKYPDEDGDLVTISSD-EDLEEAIEEARR 70 (81)
T ss_pred EEEecCCCEEEEEec---CCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCCCEEEeCCH-HHHHHHHHHHhh
Confidence 355555689999998 66777777777552 1 1343 4667666 466667776654
No 17
>PF12058 DUF3539: Protein of unknown function (DUF3539); InterPro: IPR021926 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved NHP sequence motif. ; PDB: 3N5B_B 2XKO_C 2XG8_F.
Probab=30.91 E-value=8.5 Score=27.38 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=11.9
Q ss_pred cccCCHHHHHHHHHhC
Q 032663 77 DVICHPLFQELIERSG 92 (136)
Q Consensus 77 ~~L~hp~F~~LL~~ae 92 (136)
.|||||.|.-|-.-+-
T Consensus 4 ~YLNHPtFGlLy~Vc~ 19 (88)
T PF12058_consen 4 TYLNHPTFGLLYRVCP 19 (88)
T ss_dssp -EEEETTTEEEEEEEE
T ss_pred ccccCCccchheeeee
Confidence 5999999988766544
No 18
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.03 E-value=44 Score=32.07 Aligned_cols=54 Identities=15% Similarity=0.362 Sum_probs=38.7
Q ss_pred CHHHHHHHHHhCC--CCCCCcEEEcCchHHHHHHHHHHhcCC-CCCccCHHHHHhhc
Q 032663 81 HPLFQELIERSGG--FDDEGEVVVACEVVLFEHLLWMLESST-GTQLGSMQELVDFY 134 (136)
Q Consensus 81 hp~F~~LL~~aee--f~~~G~l~iPCd~~~Fe~ll~~l~~~~-~~~~~sl~el~~fy 134 (136)
.-+|+.|++-... |...|++.+-||+..|...+.-+...+ .+.-..|.+|..+|
T Consensus 659 ~rlf~~l~~hl~~~~~s~~Gal~licDvn~y~~~i~~~~~~~vl~~F~tL~~L~nLl 715 (763)
T KOG3745|consen 659 TRLFRLLLSHLQQFKVSTAGALLLICDVNEYRTFIHSLGQPSVLPYFKTLKALANLL 715 (763)
T ss_pred HHHHHHHHHHHHHheeccccceeeeccHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 3457777777774 668999999999999999887665542 22345566666655
No 19
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=29.36 E-value=66 Score=23.88 Aligned_cols=61 Identities=26% Similarity=0.296 Sum_probs=40.1
Q ss_pred CCceEEEEEcCcceEEEEeccccCCHHHHHHHHHhC-C---------CC-CCCcEE-EcCchHHHHHHHHHHhc
Q 032663 57 AKELHAVYVGKSRRQYYLTSDVICHPLFQELIERSG-G---------FD-DEGEVV-VACEVVLFEHLLWMLES 118 (136)
Q Consensus 57 pkG~~~VyVG~e~~RfvVp~~~L~hp~F~~LL~~ae-e---------f~-~~G~l~-iPCd~~~Fe~ll~~l~~ 118 (136)
.++-|-||||++ +-|++-..|-+.|.|.-=+-.-. . .. ..|.++ |.-..+.|..|+.-+-.
T Consensus 31 ~~~~~fVyvG~~-rdYIl~~gfCSCp~~~~svvl~Gk~~C~Hi~glk~A~~~gk~~~I~~y~~d~~~Il~e~ys 103 (117)
T COG5431 31 SKVKFFVYVGKE-RDYILEGGFCSCPDFLGSVVLKGKSPCAHIIGLKVAKITGKYDYIDAYYVDYPDILREKYS 103 (117)
T ss_pred ceEEEEEEEccc-cceEEEcCcccCHHHHhHhhhcCcccchhhhheeeeeecCcEEEEEEecccHHHHHHHHHh
Confidence 356689999985 78999999999999873222221 1 11 344444 67777777777765533
No 20
>PRK02315 adaptor protein; Provisional
Probab=28.96 E-value=52 Score=26.60 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=17.8
Q ss_pred CHHHHHHHHHhC---CCCCCCcEEE
Q 032663 81 HPLFQELIERSG---GFDDEGEVVV 102 (136)
Q Consensus 81 hp~F~~LL~~ae---ef~~~G~l~i 102 (136)
+-+|.++|++|. +|..+|||+|
T Consensus 38 e~fF~~mm~Ea~~e~~F~~~~pl~~ 62 (233)
T PRK02315 38 EEFFYSMMDEVDEEDDFADEGPLWF 62 (233)
T ss_pred HHHHHHHHHHhccccCcccCCeEEE
Confidence 357999999999 4888888875
No 21
>PF10945 DUF2629: Protein of unknown function (DUF2629); InterPro: IPR024487 Some members in this family of proteins are annotated as YhjR however currently no function is known.
Probab=27.04 E-value=42 Score=20.96 Aligned_cols=19 Identities=16% Similarity=0.490 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHhcCCCcc
Q 032663 4 VGKLTKLKSAMKKLPSFPR 22 (136)
Q Consensus 4 i~~i~kLk~~lkKw~~~a~ 22 (136)
|...-+|.++++||.-++-
T Consensus 23 Isr~e~l~~~~~RWPLLaE 41 (44)
T PF10945_consen 23 ISREERLNQALQRWPLLAE 41 (44)
T ss_pred HHHHHHHHHHHHHChhHHH
Confidence 4455689999999987653
No 22
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=25.68 E-value=62 Score=28.51 Aligned_cols=54 Identities=17% Similarity=0.227 Sum_probs=42.3
Q ss_pred EEEEEcCcceEEEEeccccCCHHHHHHHHHhCC---CCCCCcEEEcCchHHHHHHHHH
Q 032663 61 HAVYVGKSRRQYYLTSDVICHPLFQELIERSGG---FDDEGEVVVACEVVLFEHLLWM 115 (136)
Q Consensus 61 ~~VyVG~e~~RfvVp~~~L~hp~F~~LL~~aee---f~~~G~l~iPCd~~~Fe~ll~~ 115 (136)
.+||--.+.+||| ...+++..+=.+||.+||| |..+....+||...-|+.+-.|
T Consensus 274 ~vV~wKn~~krkV-Sehr~~~~iPeell~~AeG~~~f~~en~~iypis~~~~~Dv~~~ 330 (406)
T KOG2813|consen 274 IVVYWKNEKKRKV-SEHRTESEIPEELLFQAEGKRIFEEENDYIYPISQYQEEDVNKM 330 (406)
T ss_pred EEEEeechhhhhh-hhhcccccCcHHHHHhhhcchhhhhccceEEeccccchhhHHHH
Confidence 4556555677775 6678887788999999998 8877789999999888876443
No 23
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=24.46 E-value=2e+02 Score=20.24 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=33.1
Q ss_pred EEEEcCcceEEEEeccccCCHHHHHHHHHhCC-C------------CCC-CcEEEcCchHHHHH
Q 032663 62 AVYVGKSRRQYYLTSDVICHPLFQELIERSGG-F------------DDE-GEVVVACEVVLFEH 111 (136)
Q Consensus 62 ~VyVG~e~~RfvVp~~~L~hp~F~~LL~~aee-f------------~~~-G~l~iPCd~~~Fe~ 111 (136)
-|--|...|||.+|. .|.+.+|-++-++ | +.+ ..|||.=+.++.+.
T Consensus 4 Kv~~~g~~RRf~~~~----~pt~~~L~~kl~~Lf~lp~~~~~vtYiDeD~D~ITlssd~eL~d~ 63 (82)
T cd06397 4 KSSFLGDTRRIVFPD----IPTWEALASKLENLYNLPEIKVGVTYIDNDNDEITLSSNKELQDF 63 (82)
T ss_pred EEEeCCceEEEecCC----CccHHHHHHHHHHHhCCChhHeEEEEEcCCCCEEEecchHHHHHH
Confidence 344455689999998 8899999888874 2 233 47888877776664
No 24
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=22.32 E-value=64 Score=20.61 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=10.1
Q ss_pred ccCHHHHHhhcc
Q 032663 124 LGSMQELVDFYT 135 (136)
Q Consensus 124 ~~sl~el~~fy~ 135 (136)
...-+|+++||.
T Consensus 37 ~Le~~Ef~~Fy~ 48 (51)
T PF14788_consen 37 RLEGEEFEEFYK 48 (51)
T ss_dssp EBEHHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 577899999994
No 25
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=21.56 E-value=1.1e+02 Score=25.64 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=26.4
Q ss_pred ccCCHHHHHHHHHhCCCCCCCcEEEcCchHHHHHHHHHH
Q 032663 78 VICHPLFQELIERSGGFDDEGEVVVACEVVLFEHLLWML 116 (136)
Q Consensus 78 ~L~hp~F~~LL~~aeef~~~G~l~iPCd~~~Fe~ll~~l 116 (136)
|.+.-+.+.+-+.+++++. .+.+|||+..=+++-.+.
T Consensus 39 y~~e~l~krv~~la~~~~s--~~v~~cDV~~d~~i~~~f 75 (259)
T COG0623 39 YQGERLEKRVEELAEELGS--DLVLPCDVTNDESIDALF 75 (259)
T ss_pred eccHHHHHHHHHHHhhccC--CeEEecCCCCHHHHHHHH
Confidence 4555567777788887766 699999997666655443
No 26
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=21.30 E-value=51 Score=21.02 Aligned_cols=13 Identities=31% Similarity=0.710 Sum_probs=9.7
Q ss_pred CCccCHHHHHhhc
Q 032663 122 TQLGSMQELVDFY 134 (136)
Q Consensus 122 ~~~~sl~el~~fy 134 (136)
....+|.||++||
T Consensus 65 ~~F~sl~~LV~~y 77 (77)
T PF00017_consen 65 KKFPSLSDLVEHY 77 (77)
T ss_dssp SEBSSHHHHHHHH
T ss_pred CcCCCHHHHHHhC
Confidence 3467788888887
No 27
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=20.58 E-value=49 Score=28.98 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=40.3
Q ss_pred CCCCCceEEEEEcCc--ceEEEEecc----cc----CCHHHHHHHHHhC----C-CC-----------------CCCcEE
Q 032663 54 NVNAKELHAVYVGKS--RRQYYLTSD----VI----CHPLFQELIERSG----G-FD-----------------DEGEVV 101 (136)
Q Consensus 54 ~~vpkG~~~VyVG~e--~~RfvVp~~----~L----~hp~F~~LL~~ae----e-f~-----------------~~G~l~ 101 (136)
--+|.|-|++|||-+ -..|.||.- .| ..-.-..||++|. + |. .+-+-.
T Consensus 88 I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR~lLrwE~~~~~~~~lLekAgi~~P~~~~~PeeIdr~VIVK~pgAkggRGyF 167 (361)
T COG1759 88 IFIPHGSFVAYVGYDGIENEFEVPMFGNRELLRWEEDRKLEYKLLEKAGLRIPKKYKSPEEIDRPVIVKLPGAKGGRGYF 167 (361)
T ss_pred EEecCCceEEEecchhhhhcccCcccccHhHhhhhcchhhHHHHHHHcCCCCCcccCChHHcCCceEEecCCccCCceEE
Confidence 358999999999943 356777741 00 2233467999998 1 43 122455
Q ss_pred EcCchHHHHHHHH-HHhcC
Q 032663 102 VACEVVLFEHLLW-MLESS 119 (136)
Q Consensus 102 iPCd~~~Fe~ll~-~l~~~ 119 (136)
+.-+...|..-.. +++++
T Consensus 168 iA~s~eef~ek~e~l~~~g 186 (361)
T COG1759 168 IASSPEEFYEKAERLLKRG 186 (361)
T ss_pred EEcCHHHHHHHHHHHHHcC
Confidence 6677777765554 55544
Done!