Query 032664
Match_columns 136
No_of_seqs 159 out of 652
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 06:32:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/032664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/032664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 6.2E-61 2.1E-65 355.6 7.3 136 1-136 1-136 (136)
2 2yfv_A Histone H3-like centrom 100.0 1.1E-48 3.9E-53 276.8 6.5 96 37-132 2-100 (100)
3 3nqu_A Histone H3-like centrom 100.0 3.3E-48 1.1E-52 288.1 7.4 110 24-135 24-136 (140)
4 3r45_A Histone H3-like centrom 100.0 2E-48 6.7E-53 293.1 6.0 112 22-135 38-152 (156)
5 2hue_B Histone H3; mini beta s 100.0 9.7E-38 3.3E-42 211.5 7.2 77 60-136 1-77 (77)
6 3nqj_A Histone H3-like centrom 100.0 2.9E-37 1E-41 211.3 7.3 75 61-135 2-78 (82)
7 2l5a_A Histone H3-like centrom 100.0 9E-34 3.1E-38 225.3 7.1 76 60-135 9-87 (235)
8 2ly8_A Budding yeast chaperone 99.9 7E-27 2.4E-31 170.0 8.1 73 62-134 1-114 (121)
9 1b67_A Protein (histone HMFA); 99.8 3.3E-21 1.1E-25 126.4 5.3 64 63-131 3-66 (68)
10 1ku5_A HPHA, archaeal histon; 99.7 1.2E-18 4.1E-23 114.9 5.5 64 62-130 6-69 (70)
11 1n1j_A NF-YB; histone-like PAI 99.6 2.4E-16 8.1E-21 109.1 6.0 74 57-133 3-76 (93)
12 2nqb_D Histone H2B; nucleosome 99.3 4.2E-12 1.4E-16 92.2 7.2 65 64-132 31-99 (123)
13 1tzy_B Histone H2B; histone-fo 99.3 4.2E-12 1.4E-16 92.5 7.1 65 64-132 34-102 (126)
14 1tzy_D Histone H4-VI; histone- 99.3 5.4E-12 1.8E-16 88.8 5.7 72 58-134 25-96 (103)
15 2yfw_B Histone H4, H4; cell cy 99.3 5E-12 1.7E-16 89.1 5.3 72 58-134 25-96 (103)
16 1id3_B Histone H4; nucleosome 99.3 6.3E-12 2.1E-16 88.6 5.8 69 61-134 27-95 (102)
17 2hue_C Histone H4; mini beta s 99.2 6.1E-12 2.1E-16 85.6 4.1 69 61-134 9-77 (84)
18 1f1e_A Histone fold protein; a 99.2 2.2E-11 7.7E-16 91.5 5.8 69 58-131 78-146 (154)
19 3b0c_T CENP-T, centromere prot 99.2 7.3E-11 2.5E-15 84.2 7.3 70 60-134 5-74 (111)
20 3b0c_W CENP-W, centromere prot 99.1 6.8E-11 2.3E-15 78.9 5.8 66 62-131 4-69 (76)
21 1taf_B TFIID TBP associated fa 99.1 2.5E-10 8.4E-15 75.6 6.0 65 62-131 6-70 (70)
22 1f1e_A Histone fold protein; a 99.0 2.7E-10 9.2E-15 85.6 5.5 68 63-134 5-72 (154)
23 1taf_A TFIID TBP associated fa 99.0 1.6E-09 5.5E-14 71.3 7.1 62 70-132 5-66 (68)
24 3v9r_A MHF1, uncharacterized p 98.9 5E-09 1.7E-13 72.4 6.5 66 65-130 11-78 (90)
25 2byk_B Chrac-14; nucleosome sl 98.8 7.7E-09 2.6E-13 75.4 7.5 72 59-133 6-77 (128)
26 4dra_A Centromere protein S; D 98.8 6.2E-09 2.1E-13 74.6 6.8 61 68-130 33-93 (113)
27 1jfi_B DR1 protein, transcript 98.8 6.1E-09 2.1E-13 79.9 6.9 73 57-133 10-82 (179)
28 3b0b_B CENP-S, centromere prot 98.8 7.9E-09 2.7E-13 73.4 5.7 65 66-130 19-85 (107)
29 2jss_A Chimera of histone H2B. 98.8 2.2E-08 7.5E-13 77.2 8.6 69 64-132 1-69 (192)
30 3vh5_A CENP-S; histone fold, c 98.7 2E-08 6.7E-13 74.3 6.2 65 66-130 19-85 (140)
31 1n1j_B NF-YC; histone-like PAI 98.6 7.7E-08 2.6E-12 66.7 6.9 80 49-130 4-83 (97)
32 4g92_C HAPE; transcription fac 98.5 1.6E-07 5.6E-12 67.4 6.6 70 60-130 36-105 (119)
33 2r10_A Chromatin structure-rem 98.5 1.6E-08 5.6E-13 84.2 -0.1 50 3-52 3-52 (361)
34 2f8n_G Core histone macro-H2A. 98.3 7.5E-07 2.6E-11 64.2 6.0 67 60-130 20-86 (120)
35 2nqb_C Histone H2A; nucleosome 98.3 8E-07 2.7E-11 64.3 5.5 67 60-130 21-87 (123)
36 2l5a_A Histone H3-like centrom 98.3 1.8E-06 6.3E-11 68.5 7.6 54 81-134 175-228 (235)
37 1tzy_A Histone H2A-IV; histone 98.3 9.9E-07 3.4E-11 64.3 5.5 67 60-130 23-89 (129)
38 1h3o_B Transcription initiatio 98.3 2.7E-06 9.4E-11 56.9 6.9 66 61-130 4-69 (76)
39 2f8n_K Histone H2A type 1; nuc 98.2 1.2E-06 4.2E-11 65.3 5.0 68 59-130 41-108 (149)
40 1jfi_A Transcription regulator 98.2 1.4E-06 4.9E-11 60.4 5.0 65 65-130 11-75 (98)
41 1f66_C Histone H2A.Z; nucleoso 98.2 1.5E-06 5.2E-11 63.3 4.8 68 60-130 25-92 (128)
42 1id3_C Histone H2A.1; nucleoso 98.2 1.2E-06 4.2E-11 64.0 4.1 67 60-130 23-89 (131)
43 2jss_A Chimera of histone H2B. 98.0 7.9E-06 2.7E-10 62.8 5.7 68 60-130 103-170 (192)
44 2byk_A Chrac-16; nucleosome sl 97.9 2.5E-05 8.5E-10 57.6 5.9 66 64-130 18-84 (140)
45 2x4w_B Histone H3.2; transcrip 97.2 0.00014 4.8E-09 38.4 1.5 23 26-48 4-26 (26)
46 3a1b_A DNA (cytosine-5)-methyl 92.3 0.027 9.1E-07 42.2 0.2 21 2-22 1-21 (159)
47 4dra_E Centromere protein X; D 91.9 0.88 3E-05 30.5 7.3 59 70-128 16-76 (84)
48 3avr_B Histone H3; cupin super 91.8 0.074 2.5E-06 27.7 1.5 25 18-42 1-25 (26)
49 3b0b_C CENP-X, centromere prot 90.7 1.2 4E-05 29.6 7.0 59 70-128 12-72 (81)
50 3ksy_A SOS-1, SON of sevenless 81.4 3 0.0001 38.6 6.7 66 60-130 102-167 (1049)
51 1r4v_A Hypothetical protein AQ 81.3 1.8 6E-05 32.6 4.2 71 55-130 17-89 (171)
52 1wwi_A Hypothetical protein TT 78.5 2.4 8.3E-05 31.2 4.1 63 62-129 2-64 (148)
53 3uk6_A RUVB-like 2; hexameric 73.8 15 0.00052 28.5 7.9 51 81-131 275-329 (368)
54 2ly8_A Budding yeast chaperone 72.2 3.4 0.00012 29.4 3.4 29 81-109 61-89 (121)
55 3k1j_A LON protease, ATP-depen 69.0 23 0.00078 30.3 8.6 50 82-131 312-374 (604)
56 1g8p_A Magnesium-chelatase 38 67.6 21 0.0007 27.3 7.4 51 81-131 264-321 (350)
57 1h3o_A Transcription initiatio 66.6 4.6 0.00016 26.4 2.9 52 63-115 3-54 (75)
58 3v9r_B MHF2, uncharacterized p 66.2 4 0.00014 27.5 2.6 66 63-131 2-75 (88)
59 3kw6_A 26S protease regulatory 57.7 5.6 0.00019 24.8 2.0 30 101-130 42-71 (78)
60 1bh9_B TAFII28; histone fold, 54.9 43 0.0015 22.1 7.5 65 63-132 17-82 (89)
61 2v1u_A Cell division control p 48.9 60 0.0021 24.7 7.1 50 81-130 219-274 (387)
62 2c9o_A RUVB-like 1; hexameric 43.9 75 0.0026 25.9 7.3 51 82-132 383-437 (456)
63 2qby_A CDC6 homolog 1, cell di 43.9 1E+02 0.0035 23.3 8.5 49 81-129 215-269 (386)
64 3bos_A Putative DNA replicatio 40.5 80 0.0027 22.1 6.2 48 81-129 190-240 (242)
65 2chg_A Replication factor C sm 39.7 83 0.0029 21.4 6.1 47 82-130 178-224 (226)
66 1njg_A DNA polymerase III subu 36.5 52 0.0018 22.7 4.6 47 82-129 202-248 (250)
67 1ixz_A ATP-dependent metallopr 35.4 35 0.0012 25.0 3.7 30 100-129 224-253 (254)
68 2dzn_B 26S protease regulatory 34.0 45 0.0016 20.7 3.6 27 104-130 40-66 (82)
69 3vlf_B 26S protease regulatory 33.0 48 0.0016 21.1 3.6 30 101-130 40-69 (88)
70 2qby_B CDC6 homolog 3, cell di 30.6 1.8E+02 0.006 22.2 7.2 47 82-130 216-268 (384)
71 3aji_B S6C, proteasome (prosom 29.4 56 0.0019 20.2 3.4 29 102-130 41-69 (83)
72 1lv7_A FTSH; alpha/beta domain 28.4 51 0.0017 24.2 3.5 31 100-130 220-250 (257)
73 2krk_A 26S protease regulatory 27.0 69 0.0024 20.3 3.6 73 40-130 7-79 (86)
74 1iy2_A ATP-dependent metallopr 25.6 64 0.0022 24.1 3.7 30 100-129 248-277 (278)
75 1jr3_D DNA polymerase III, del 24.0 1.1E+02 0.0037 23.5 4.8 61 69-131 148-208 (343)
76 1fnn_A CDC6P, cell division co 23.3 2.4E+02 0.0083 21.3 8.5 49 82-130 212-272 (389)
77 3qb5_K Translin-associated pro 22.8 1.5E+02 0.005 23.4 5.4 26 82-107 113-138 (290)
78 2eqb_B RAB guanine nucleotide 22.5 86 0.0029 21.2 3.4 30 89-118 48-77 (97)
79 4b4t_I 26S protease regulatory 22.2 79 0.0027 26.7 3.9 32 99-130 390-421 (437)
80 3ksy_A SOS-1, SON of sevenless 22.0 88 0.003 28.9 4.4 38 66-107 21-58 (1049)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=6.2e-61 Score=355.59 Aligned_cols=136 Identities=97% Similarity=1.327 Sum_probs=93.7
Q ss_pred CCcccccccccCCCCCCCchhhhhhhccCCCCCCCCCCccccCCCchhhHHHhhhhhhhhhhhhcCchhHHHHHHHhhhc
Q 032664 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
Q Consensus 1 MartK~~a~ks~g~kaprk~~~~k~~~~~~p~~~~~~k~~r~~pg~~~l~EIr~~q~st~llipk~pF~RlVreI~~~~~ 80 (136)
||||||++++++||++|+|++++++++++.|..+++++++||+||+++|+|||+||+||+||||++||+|||+||++++.
T Consensus 1 MARtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~ 80 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHC
T ss_pred CCCCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcccC
Q 032664 81 TDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~~~ 136 (136)
+++|||++|+++|||++|+|||+||||+|+||+||||||||++|||||++|||+++
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 136 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCC
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999864
No 2
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=1.1e-48 Score=276.78 Aligned_cols=96 Identities=64% Similarity=0.982 Sum_probs=66.9
Q ss_pred CCccccCCCchhhHHHhhhhhhhhhhhhcCchhHHHHHHHhhhcc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032664 37 KKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 113 (136)
Q Consensus 37 ~k~~r~~pg~~~l~EIr~~q~st~llipk~pF~RlVreI~~~~~~---~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~ 113 (136)
++++||+||+++|+|||+||+||+|||||+||+||||||.+++.+ ++|||++|+++||||+|+|||+||||+|+||+
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999976 89999999999999999999999999999999
Q ss_pred hcCccccChhhHHHHHHHh
Q 032664 114 HAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 114 HakRvTi~~~Diqla~ri~ 132 (136)
||||||||++|||||++||
T Consensus 82 HAkRvTi~~kDiqLa~rir 100 (100)
T 2yfv_A 82 HAKRITIMRKDMQLARRIR 100 (100)
T ss_dssp HTTCSEECHHHHHHHHHCC
T ss_pred HcCCccCCHHHHHHHHHhC
Confidence 9999999999999999986
No 3
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=3.3e-48 Score=288.11 Aligned_cols=110 Identities=57% Similarity=0.850 Sum_probs=72.8
Q ss_pred hhhccCCCCCCCCCCcc-ccCCCchhhHHHhhhhhhhhhhhhcCchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHH
Q 032664 24 KAARKSAPATGGVKKPH-RFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVAALQEAAEAY 100 (136)
Q Consensus 24 k~~~~~~p~~~~~~k~~-r~~pg~~~l~EIr~~q~st~llipk~pF~RlVreI~~~~~--~~~r~~~~Al~aLqea~E~~ 100 (136)
+++++++|..|++++++ +|+||+ |+|||+||+||+|||||+||+|||+||.+++. .++|||++|+++||||+|+|
T Consensus 24 ~aa~~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEay 101 (140)
T 3nqu_A 24 PGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAF 101 (140)
T ss_dssp -------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHH
Confidence 56778888888776654 899998 99999999999999999999999999999997 58999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCccccChhhHHHHHHHhccc
Q 032664 101 LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 101 lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~~ 135 (136)
||+||||+|+||+||||||||++|||||++|||+.
T Consensus 102 Lv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 102 LVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999975
No 4
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=2e-48 Score=293.08 Aligned_cols=112 Identities=56% Similarity=0.825 Sum_probs=74.0
Q ss_pred hhhhhccCCCCCCCCCCc-cccCCCchhhHHHhhhhhhhhhhhhcCchhHHHHHHHhhhc--ccccccHHHHHHHHHHHH
Q 032664 22 ATKAARKSAPATGGVKKP-HRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVAALQEAAE 98 (136)
Q Consensus 22 ~~k~~~~~~p~~~~~~k~-~r~~pg~~~l~EIr~~q~st~llipk~pF~RlVreI~~~~~--~~~r~~~~Al~aLqea~E 98 (136)
+++++++++|..|+++++ +||+||+ |+|||+||+||+|||||+||+|||+||.++|. .++|||++|+++||||+|
T Consensus 38 ~~~aa~ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaE 115 (156)
T 3r45_A 38 PTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAE 115 (156)
T ss_dssp ---------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHH
Confidence 566788899988888766 7899998 99999999999999999999999999999997 589999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhccc
Q 032664 99 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 99 ~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~~ 135 (136)
+|||+||||+|+||+||||||||++|||||++|||+.
T Consensus 116 ayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~~ 152 (156)
T 3r45_A 116 AFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 152 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcccc
Confidence 9999999999999999999999999999999999974
No 5
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=100.00 E-value=9.7e-38 Score=211.50 Aligned_cols=77 Identities=94% Similarity=1.268 Sum_probs=74.0
Q ss_pred hhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcccC
Q 032664 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
Q Consensus 60 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~~~ 136 (136)
++||||+||+||||||++++.+++|||++|+++|||++|+||++||||+|+||+||||||||++|||||++|||+++
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 77 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 77 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC-
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999863
No 6
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-37 Score=211.30 Aligned_cols=75 Identities=64% Similarity=0.956 Sum_probs=71.5
Q ss_pred hhhhcCchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhccc
Q 032664 61 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 61 llipk~pF~RlVreI~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~~ 135 (136)
|||||+||+||||||.+++. .++|||++|+++|||++|+|||+||||+|+||+||||||||++|||||++|||++
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 78999999999999999997 6899999999999999999999999999999999999999999999999999985
No 7
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-34 Score=225.28 Aligned_cols=76 Identities=68% Similarity=1.027 Sum_probs=72.3
Q ss_pred hhhhhcCchhHHHHHHHhhhcc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhccc
Q 032664 60 ELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
Q Consensus 60 ~llipk~pF~RlVreI~~~~~~---~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~~ 135 (136)
.+||||+||+||||||++++.+ ++|||++|+.|||||+|+|||+||||+|+||+||||||||++|||||++|||++
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~ 87 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF 87 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence 5999999999999999999975 899999999999999999999999999999999999999999999999999985
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.94 E-value=7e-27 Score=169.98 Aligned_cols=73 Identities=58% Similarity=0.867 Sum_probs=69.1
Q ss_pred hhhcCchhHHHHHHHhhhcc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------------------
Q 032664 62 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIH------------------------ 114 (136)
Q Consensus 62 lipk~pF~RlVreI~~~~~~---~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~H------------------------ 114 (136)
||||+||+||||||++++.+ ++|||++|+.+||||+|+|||+||||+|+||+|
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~ 80 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSF 80 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHH
Confidence 69999999999999999986 899999999999999999999999999999886
Q ss_pred --------------cCccccChhhHHHHHHHhcc
Q 032664 115 --------------AKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 115 --------------akRvTi~~~Diqla~ri~~~ 134 (136)
++|+||+..||.+|.+..|.
T Consensus 81 l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 81 LESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 58999999999999998885
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.83 E-value=3.3e-21 Score=126.37 Aligned_cols=64 Identities=28% Similarity=0.344 Sum_probs=61.7
Q ss_pred hhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032664 63 IRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 63 ipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 131 (136)
||++||.||++++ ++.+||.+|+++||+++|.|++.||++|+.||.|+||+||+++||++|++.
T Consensus 3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 7999999999999 789999999999999999999999999999999999999999999999864
No 10
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.75 E-value=1.2e-18 Score=114.93 Aligned_cols=64 Identities=30% Similarity=0.361 Sum_probs=61.5
Q ss_pred hhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 62 lipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
.||++||.||+++. +..|||++|+++|||++|.|+.++++||+.+|.|+||+||+++||+||.+
T Consensus 6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 48999999999997 78999999999999999999999999999999999999999999999975
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.64 E-value=2.4e-16 Score=109.06 Aligned_cols=74 Identities=16% Similarity=0.233 Sum_probs=65.1
Q ss_pred hhhhhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhc
Q 032664 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
Q Consensus 57 ~st~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~ 133 (136)
+++++.||+++|.|++++++. .+.+|+.+|..+||+++|.|+..|+++|+.+|.|++|+||+.+||..|++-.|
T Consensus 3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~ 76 (93)
T 1n1j_A 3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 76 (93)
T ss_dssp ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTT
T ss_pred CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 356789999999999999943 46899999999999999999999999999999999999999999999987443
No 12
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=99.31 E-value=4.2e-12 Score=92.18 Aligned_cols=65 Identities=25% Similarity=0.366 Sum_probs=59.2
Q ss_pred hcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHH----HHHHhhcCccccChhhHHHHHHHh
Q 032664 64 RKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDT----NLCAIHAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 64 pk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a----~~~a~HakRvTi~~~Diqla~ri~ 132 (136)
++..|..||+.|+.++++|.+|+++|+..| ++|++++||.. ..++.|++|.||+.+|||.|++|.
T Consensus 31 ~~esy~~YIyKVLKQVhpd~gISskAm~Im----nSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 31 RKESYAIYIYTVLKQVHPDTGISSKAMSIM----NSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp CCCCSHHHHHHHHHHHCTTCEECHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHhCCCCCcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 567899999999999999999999999999 77777777765 889999999999999999999985
No 13
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=99.31 E-value=4.2e-12 Score=92.49 Aligned_cols=65 Identities=26% Similarity=0.374 Sum_probs=59.6
Q ss_pred hcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHH----HHHHhhcCccccChhhHHHHHHHh
Q 032664 64 RKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDT----NLCAIHAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 64 pk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a----~~~a~HakRvTi~~~Diqla~ri~ 132 (136)
++..|..||+.|+.++++|.+|+++|+..| ++|++++||.. ..++.|++|.||+.+|||.|++|.
T Consensus 34 ~~esy~~YIyKVLKQVhpd~gISskAm~Im----nSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 34 RKESYSIYVYKVLKQVHPDTGISSKAMGIM----NSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp CCCCCHHHHHHHHHHHCTTCEECHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCCCCCcCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 668899999999999999999999999999 77777777765 889999999999999999999985
No 14
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.26 E-value=5.4e-12 Score=88.82 Aligned_cols=72 Identities=22% Similarity=0.228 Sum_probs=65.3
Q ss_pred hhhhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032664 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 58 st~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~ 134 (136)
+..--||+.+..||.+.. +..||+.+|.++|++..|.|+.++.++|..+|.|++|.||++.||++|.+-.|+
T Consensus 25 ~~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~ 96 (103)
T 1tzy_D 25 DNIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_dssp CGGGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred hhcccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCC
Confidence 333449999999998876 567999999999999999999999999999999999999999999999997775
No 15
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.26 E-value=5e-12 Score=89.06 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=62.8
Q ss_pred hhhhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032664 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 58 st~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~ 134 (136)
+..--||+.+..||.+.. +..||+.+|.++|++..|.|+.++.++|..+|.|++|.||+++||++|.+-.|+
T Consensus 25 ~~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~ 96 (103)
T 2yfw_B 25 DNIQGITKPAIRRLARRG-----GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGR 96 (103)
T ss_dssp -----CCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred hhhccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 333449999999998876 567999999999999999999999999999999999999999999999998775
No 16
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.26 E-value=6.3e-12 Score=88.58 Aligned_cols=69 Identities=23% Similarity=0.271 Sum_probs=64.9
Q ss_pred hhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032664 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 61 llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~ 134 (136)
.-||+.|..||.+.. +..+++.+|.++|++..|.|+.++.+||+.+|.|++|.||+..||.+|.+-.|+
T Consensus 27 ~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~ 95 (102)
T 1id3_B 27 QGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 95 (102)
T ss_dssp GGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 449999999999887 778999999999999999999999999999999999999999999999998775
No 17
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.22 E-value=6.1e-12 Score=85.58 Aligned_cols=69 Identities=23% Similarity=0.246 Sum_probs=64.3
Q ss_pred hhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032664 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 61 llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~ 134 (136)
.-||+.+..||.+.. +..+++.+|.++|++..|.|+.++.+||..+|.|++|.||+..||.+|.+-.|+
T Consensus 9 ~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~ 77 (84)
T 2hue_C 9 QGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 77 (84)
T ss_dssp CSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred CCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 458999999999877 779999999999999999999999999999999999999999999999987765
No 18
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.18 E-value=2.2e-11 Score=91.51 Aligned_cols=69 Identities=19% Similarity=0.082 Sum_probs=65.2
Q ss_pred hhhhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032664 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 58 st~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 131 (136)
.-++.||++|..||+|+. +..|+|.+|.++|+++.|.|+..+.++|+..|.|++|.||+++||++|.+.
T Consensus 78 ~~~l~lP~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 78 YDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp CCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 456789999999999998 789999999999999999999999999999999999999999999999875
No 19
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.16 E-value=7.3e-11 Score=84.24 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=61.1
Q ss_pred hhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032664 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 60 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~ 134 (136)
++-||+....||+++. +..+++.++.++|+++++.|+.++..|++..|.||+|.||+.+||.++.+--|.
T Consensus 5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 4678999999988887 789999999999999999999999999999999999999999999999986654
No 20
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.14 E-value=6.8e-11 Score=78.87 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=61.4
Q ss_pred hhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032664 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 62 lipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 131 (136)
.+|+++..|+++++. ++.+++.+|.++|++++|.|+..|-.+|+..|.|.+|.||+.+||+.|.+.
T Consensus 4 ~LP~A~V~rI~K~~~----p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 4 TVPRGTLRKIIKKHK----PHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp CCCHHHHHHHHHHHC----TTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred cccccHHHHHHHHhC----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 589999999988874 478999999999999999999999999999999999999999999999875
No 21
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=99.07 E-value=2.5e-10 Score=75.60 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=60.2
Q ss_pred hhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032664 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 62 lipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 131 (136)
.+|..|+.++...+ |-.+++.+|..+|-+-.|.++-++.++|..++.|+||.||+..||.+|.++
T Consensus 6 ~lp~~~v~~iaes~-----Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 6 SISAESMKVIAESI-----GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp CCCHHHHHHHHHHT-----TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 47889999988887 778999999999999999999999999999999999999999999999763
No 22
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.02 E-value=2.7e-10 Score=85.60 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=63.0
Q ss_pred hhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032664 63 IRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 63 ipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~ 134 (136)
||++|..||+|+.+ ++.|+|.+|-++|++++|.|+..+-.+|+..|.|++|.||++.||..+..-+|-
T Consensus 5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~ 72 (154)
T 1f1e_A 5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMV 72 (154)
T ss_dssp CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccc
Confidence 79999999998875 569999999999999999999999999999999999999999999999876653
No 23
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.97 E-value=1.6e-09 Score=71.26 Aligned_cols=62 Identities=23% Similarity=0.416 Sum_probs=54.8
Q ss_pred HHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHh
Q 032664 70 RLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 70 RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~ 132 (136)
++|..|+.+. +..++++++...|-|.+|.|..+++++|..+|.||+|.||..+||+||...+
T Consensus 5 ~~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 4555555543 5579999999999999999999999999999999999999999999999865
No 24
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.86 E-value=5e-09 Score=72.36 Aligned_cols=66 Identities=26% Similarity=0.201 Sum_probs=55.4
Q ss_pred cCchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 65 KLPFQRLVREIAQDFK--TDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 65 k~pF~RlVreI~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
|+.+.--|-+|+++.. .+..++++++.+|-|.++.|+.++.+|+...|.||||.||+++||.|+.|
T Consensus 11 Kaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 11 KARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3444455555655552 24789999999999999999999999999999999999999999999975
No 25
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=98.85 E-value=7.7e-09 Score=75.38 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=62.0
Q ss_pred hhhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhc
Q 032664 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
Q Consensus 59 t~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~ 133 (136)
.++.+|.++..|++++++. ...+++.+|..+|++++|.|+..|-..|+..|.|.+|.||+.+||..|+.-.|
T Consensus 6 ~d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp -----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 3578999999999998843 46899999999999999999999999999999999999999999999987654
No 26
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.84 E-value=6.2e-09 Score=74.57 Aligned_cols=61 Identities=31% Similarity=0.431 Sum_probs=52.6
Q ss_pred hhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 68 FQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 68 F~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
..|+|++...+ .+..++++++.+|-|.++.|+.++..|+..+|.||||.||+++||.|+.|
T Consensus 33 V~rIvke~gae--r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 33 VGCLCEEVALD--KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHH--HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHH--cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 44555555332 24669999999999999999999999999999999999999999999976
No 27
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.83 E-value=6.1e-09 Score=79.91 Aligned_cols=73 Identities=15% Similarity=0.281 Sum_probs=65.9
Q ss_pred hhhhhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhc
Q 032664 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
Q Consensus 57 ~st~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~ 133 (136)
...++.+|+++..|++++++. +.+|+.+|.++|+++++.|+..|-..|+..|.|.+|.||+.+||-.|..-.|
T Consensus 10 ~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~Lg 82 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG 82 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred chhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcC
Confidence 455788999999999999953 6899999999999999999999999999999999999999999999987554
No 28
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.78 E-value=7.9e-09 Score=73.40 Aligned_cols=65 Identities=28% Similarity=0.321 Sum_probs=53.7
Q ss_pred CchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 66 LPFQRLVREIAQDFK--TDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 66 ~pF~RlVreI~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
..+.--|-.|+++.. .+.+++++++.+|-|.++.|+.++..|+...|.||||.||+.+||.|+.|
T Consensus 19 aal~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~R 85 (107)
T 3b0b_B 19 AAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLAR 85 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence 333333444444432 35799999999999999999999999999999999999999999999986
No 29
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.78 E-value=2.2e-08 Score=77.22 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=58.5
Q ss_pred hcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHh
Q 032664 64 RKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 64 pk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~ 132 (136)
++..|..||+.|+.+++++.+|+.+|+..|-...++++..|..+|..++.|.+|.||+++|||.|+++.
T Consensus 1 ~~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 1 RKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp CCSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 357899999999999999999999999999555555555555556889999999999999999999874
No 30
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.72 E-value=2e-08 Score=74.31 Aligned_cols=65 Identities=29% Similarity=0.348 Sum_probs=55.0
Q ss_pred CchhHHHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 66 LPFQRLVREIAQDFK--TDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 66 ~pF~RlVreI~~~~~--~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
+...--|-.|+++.. .+..++++++.+|-|.++.|+.++..|+..+|.||+|.||++.||.|+.|
T Consensus 19 aAl~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 19 AAVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 334444555555542 46789999999999999999999999999999999999999999999986
No 31
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.64 E-value=7.7e-08 Score=66.73 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=55.0
Q ss_pred hHHHhhhhhhhhhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHH
Q 032664 49 LREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128 (136)
Q Consensus 49 l~EIr~~q~st~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla 128 (136)
+.||+..- ..+.--..+|.+|+ +.|++.-...-+++.+|..+|..++|.|+..|.+.|+.+|.+.+|.||+++||++|
T Consensus 4 ~~~~~~~~-~~~~~~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~A 81 (97)
T 1n1j_B 4 MEEIRNLT-VKDFRVQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA 81 (97)
T ss_dssp -----------------CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHhcc-cCCcCCCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 45666542 11222344555554 55655444446899999999999999999999999999999999999999999999
Q ss_pred HH
Q 032664 129 RR 130 (136)
Q Consensus 129 ~r 130 (136)
++
T Consensus 82 v~ 83 (97)
T 1n1j_B 82 IT 83 (97)
T ss_dssp HT
T ss_pred Hh
Confidence 75
No 32
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.54 E-value=1.6e-07 Score=67.39 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=62.4
Q ss_pred hhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
++-.+.+|.+| |+.|++.-....+++.+|..+|+.++|.|+..|.+.|+.+|...+|.||+++||..|+.
T Consensus 36 d~k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 36 DYKIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp CSSCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred ccccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 34456789988 68888866666799999999999999999999999999999999999999999999985
No 33
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.48 E-value=1.6e-08 Score=84.20 Aligned_cols=50 Identities=40% Similarity=0.507 Sum_probs=12.5
Q ss_pred cccccccccCCCCCCCchhhhhhhccCCCCCCCCCCccccCCCchhhHHH
Q 032664 3 RTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREI 52 (136)
Q Consensus 3 rtK~~a~ks~g~kaprk~~~~k~~~~~~p~~~~~~k~~r~~pg~~~l~EI 52 (136)
||||+|++++||++|++++++++++++.|..++++++|||+||++++.|-
T Consensus 3 ~tk~tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~ 52 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE 52 (361)
T ss_dssp ------------------------------------CCSSCCSCCBCCCS
T ss_pred cccccccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence 89999999999999999999999988888888889999999999997765
No 34
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.34 E-value=7.5e-07 Score=64.20 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=61.2
Q ss_pred hhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
.|.+|-.+|.|++++- ....|++.+|-..|-.+.|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 20 gLqfPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKG----HPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp TCSSCHHHHHHHHHHH----SSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 5778999999998876 225699999999999999999999999999999999999999999999986
No 35
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.31 E-value=8e-07 Score=64.31 Aligned_cols=67 Identities=25% Similarity=0.251 Sum_probs=60.6
Q ss_pred hhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
+|.+|-.+|.|++++- ....|++++|-..|-.+.|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 21 gL~fPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp TCSSCHHHHHHHHHHT----TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 5778888888888664 245699999999999999999999999999999999999999999999986
No 36
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.29 E-value=1.8e-06 Score=68.53 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=51.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHHhcc
Q 032664 81 TDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 134 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~~~ 134 (136)
+..|+|.++.+.+.++.|.|+.++..||+.+|-||+|.||++.||.+|.+..|.
T Consensus 175 GVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr 228 (235)
T 2l5a_A 175 GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 228 (235)
T ss_dssp TCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCC
Confidence 678999999999999999999999999999999999999999999999997764
No 37
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.28 E-value=9.9e-07 Score=64.33 Aligned_cols=67 Identities=25% Similarity=0.249 Sum_probs=60.8
Q ss_pred hhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
+|.+|-.+|.|++++- ....|++++|-..|-.+.|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKG----NYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp TCSSCHHHHHHHHHHT----TSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ceeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 5778999998888764 245699999999999999999999999999999999999999999999986
No 38
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=98.27 E-value=2.7e-06 Score=56.88 Aligned_cols=66 Identities=24% Similarity=0.351 Sum_probs=59.3
Q ss_pred hhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 61 llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
-+++|.-.+.||++| .+...+.+++-+.|.+.|+.|+.+..+.+..+|.|.+--||.++|+||...
T Consensus 4 ~vl~k~~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 4 MVLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp CSSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred ccccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 345777777788777 567899999999999999999999999999999999999999999999875
No 39
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.22 E-value=1.2e-06 Score=65.33 Aligned_cols=68 Identities=25% Similarity=0.252 Sum_probs=61.0
Q ss_pred hhhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 59 t~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
..|.+|-.+|.|++++- ....|++.+|-..|-.+.|.+..+++|.|...|.|+++.+|+++||++|.+
T Consensus 41 agLqFPVgrI~R~LK~~----~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKG----NYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp HTCSSCHHHHHHHHHHT----TSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHcc----ccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 35778988888887664 345699999999999999999999999999999999999999999999986
No 40
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.22 E-value=1.4e-06 Score=60.43 Aligned_cols=65 Identities=14% Similarity=0.200 Sum_probs=52.2
Q ss_pred cCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 65 KLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 65 k~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
.+|.+|+ +.|++.-....+++.+|...|-.++|.|+..|.+.|+.+|.+.+|.||+++||++|++
T Consensus 11 ~fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 11 RFPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp CCCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred CCChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 4555554 5566644444699999999999999999999999999999999999999999999874
No 41
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.20 E-value=1.5e-06 Score=63.25 Aligned_cols=68 Identities=19% Similarity=0.148 Sum_probs=60.4
Q ss_pred hhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
+|.+|-.+|.|++++-- ....|++++|-..|-.+.|.+..+++|.|...|.|.++.+|+++||+||.+
T Consensus 25 gLqfPV~ri~R~Lk~~~---~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRT---TSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp TCSSCHHHHHHHHHHTS---CSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcc---cchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 57789999999987761 013599999999999999999999999999999999999999999999986
No 42
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.18 E-value=1.2e-06 Score=64.01 Aligned_cols=67 Identities=27% Similarity=0.264 Sum_probs=59.9
Q ss_pred hhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
.|.+|-.+|.|++++- ....|++.+|-..|-.+.|.+..+++|.|...|.|.++.+|+++||+||.+
T Consensus 23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRG----NYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp TCSSCHHHHHHHHHTT----CSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CeecCHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 4778888888887653 245699999999999999999999999999999999999999999999986
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.00 E-value=7.9e-06 Score=62.84 Aligned_cols=68 Identities=25% Similarity=0.204 Sum_probs=60.3
Q ss_pred hhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
+|.+|-.++.|++++-. ....|++.+|...|-...|.+..+++|.|...|.|+++.||+++||++|.+
T Consensus 103 gl~fPv~ri~R~lk~~~---~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHA---TGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SCCSCHHHHHHHHHHTT---CSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcC---ccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 67888888888887641 123699999999999999999999999999999999999999999999986
No 44
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.86 E-value=2.5e-05 Score=57.57 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=50.3
Q ss_pred hcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCccccChhhHHHHHH
Q 032664 64 RKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCA-IHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 64 pk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a-~HakRvTi~~~Diqla~r 130 (136)
..+|.+|+ +.|++.-...-.++.+|..+++.|+|-|+..|.+.|+.+| ...+|.||+.+||..|+.
T Consensus 18 ~~LPlaRI-KrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 18 TFLPLSRV-RTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp ------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred CCCCHHHH-HHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 34555554 6776655445689999999999999999999999999999 999999999999999986
No 45
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=97.16 E-value=0.00014 Score=38.36 Aligned_cols=23 Identities=70% Similarity=1.027 Sum_probs=18.1
Q ss_pred hccCCCCCCCCCCccccCCCchh
Q 032664 26 ARKSAPATGGVKKPHRFRPGTVA 48 (136)
Q Consensus 26 ~~~~~p~~~~~~k~~r~~pg~~~ 48 (136)
++++.|..+++++++||+||++|
T Consensus 4 ark~~p~~~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 4 ARKSAPATGGVXKPHRYRXXXXX 26 (26)
T ss_pred cccCCCCCCccccccccccccCC
Confidence 44566667778889999999975
No 46
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=92.34 E-value=0.027 Score=42.22 Aligned_cols=21 Identities=95% Similarity=1.164 Sum_probs=12.6
Q ss_pred CcccccccccCCCCCCCchhh
Q 032664 2 ARTKQTARKSTGGKAPRKQLA 22 (136)
Q Consensus 2 artK~~a~ks~g~kaprk~~~ 22 (136)
|||||+|+|++|+|++.+++.
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~r 21 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQLR 21 (159)
T ss_dssp CEEEECCCC-------CHHHH
T ss_pred CccccccccccCCCcchHHHH
Confidence 799999999999999999873
No 47
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=91.85 E-value=0.88 Score=30.48 Aligned_cols=59 Identities=12% Similarity=0.109 Sum_probs=46.2
Q ss_pred HHHHHHHhhh-c-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHH
Q 032664 70 RLVREIAQDF-K-TDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128 (136)
Q Consensus 70 RlVreI~~~~-~-~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla 128 (136)
.+|.+|++.. . ..++++.+|+.++++..+-|++.-...|..-|---+-.+|.++|++-+
T Consensus 16 ~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki 76 (84)
T 4dra_E 16 ELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKV 76 (84)
T ss_dssp HHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 3445555433 3 679999999999999999999999999877776566778999998743
No 48
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=91.82 E-value=0.074 Score=27.66 Aligned_cols=25 Identities=84% Similarity=1.044 Sum_probs=18.3
Q ss_pred CchhhhhhhccCCCCCCCCCCcccc
Q 032664 18 RKQLATKAARKSAPATGGVKKPHRF 42 (136)
Q Consensus 18 rk~~~~k~~~~~~p~~~~~~k~~r~ 42 (136)
+++++++++++++|..++++++||.
T Consensus 1 rK~la~Kaarks~p~~~g~kk~hR~ 25 (26)
T 3avr_B 1 RKQLATKAARXSAPATGGVKKPXXX 25 (26)
T ss_pred CcccccccccCCCCCCccccccCCC
Confidence 3667777777777877887777763
No 49
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=90.73 E-value=1.2 Score=29.61 Aligned_cols=59 Identities=8% Similarity=0.057 Sum_probs=45.5
Q ss_pred HHHHHHHhhh-c-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHH
Q 032664 70 RLVREIAQDF-K-TDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 128 (136)
Q Consensus 70 RlVreI~~~~-~-~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla 128 (136)
.+|..|++.. . ...+|+.+|+.++.+..+-|++.-+..|..-|.--+-..|.++|++-+
T Consensus 12 ~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki 72 (81)
T 3b0b_C 12 ETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKV 72 (81)
T ss_dssp HHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHH
Confidence 3444444443 2 578999999999999999999999999888775556678888888743
No 50
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=81.41 E-value=3 Score=38.65 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=53.6
Q ss_pred hhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 60 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 60 ~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
+|.+|-.-..|+++.. ...|+.+.|-.-|--..|....+++|-|...|...++..|+++|+++|.+
T Consensus 102 ~l~~pv~~~~~~l~~~-----~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEV-----LGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SCSSCHHHHHHHHHHH-----HCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred CccccHHHHHHHhhcc-----cccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 3555555555555222 34699999999998888999999999999999999999999999999985
No 51
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=81.26 E-value=1.8 Score=32.64 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=58.5
Q ss_pred hhhhhhh--hhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 55 YQKSTEL--LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 55 ~q~st~l--lipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
|.+-.+. +|+-.-|.+|.|+. .++-+..+-+.-+-+..|.-+-+||+-+..-|...+|-.|.+.|+-+...
T Consensus 17 ~~~~~~Mm~vmg~~kferlFR~a-----agLDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPITKG 89 (171)
T 1r4v_A 17 YSKIETMLRPKGFDKLDHYFRTE-----LDIDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNITKA 89 (171)
T ss_dssp ----CCTTSCTTHHHHHHHHHHH-----HCCCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCCHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHH-----hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHH
Confidence 4444445 78888899999998 56788888899999999999999999999999999999999999754443
No 52
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=78.52 E-value=2.4 Score=31.18 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=52.5
Q ss_pred hhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032664 62 LIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
Q Consensus 62 lipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ 129 (136)
+|+-.-|.++.|+. .++-+..+-+.-+-+..|.-+-+||+-+..-|...+|-.|.+.|+-+..
T Consensus 2 vm~~~~~e~lFR~a-----a~LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPITk 64 (148)
T 1wwi_A 2 LMKVAEFERLFRQA-----AGLDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAK 64 (148)
T ss_dssp CSCHHHHHHHHHHH-----HCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCCH
T ss_pred cCCHHHHHHHHHHH-----hccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccH
Confidence 34556688898888 4566777778888899999999999999999999999999999975443
No 53
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=73.75 E-value=15 Score=28.45 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=44.6
Q ss_pred ccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032664 81 TDLRFQSSAVAALQEAAE----AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E----~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 131 (136)
.+..|+.++++.|.+.++ .++.++++.+...|...++.+|+..|++-+...
T Consensus 275 ~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 275 EDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp TTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 456799999999998887 488899999999998889999999999988765
No 54
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=72.20 E-value=3.4 Score=29.37 Aligned_cols=29 Identities=10% Similarity=0.219 Sum_probs=27.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHH
Q 032664 81 TDLRFQSSAVAALQEAAEAYLVGLFEDTN 109 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E~~lv~lfe~a~ 109 (136)
+..|+|.++.+.+.++.|.|+.++..|++
T Consensus 61 GvkRIS~~iy~e~r~vl~~~l~~i~rdav 89 (121)
T 2ly8_A 61 GSKRISGLIYEEVRAVLKSFLESVIRDSV 89 (121)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999984
No 55
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=69.05 E-value=23 Score=30.34 Aligned_cols=50 Identities=18% Similarity=0.172 Sum_probs=42.5
Q ss_pred cccccHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032664 82 DLRFQSSAVAALQEAA-------------EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~-------------E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 131 (136)
...|+.+|+..|.+.+ ...|.++.+.|..+|...++-.|+.+|++-|...
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4689999999987754 5677889999998898889999999999998754
No 56
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=67.55 E-value=21 Score=27.33 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=42.6
Q ss_pred ccccccHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032664 81 TDLRFQSSAVAALQEAAEA-------YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E~-------~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 131 (136)
..+.|+.++++.|.+.+.. .+..+.+.+..+|.-.++-+|+..|+..|..+
T Consensus 264 ~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 264 PKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 3568999999999887764 56788888888888889999999999987765
No 57
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=66.62 E-value=4.6 Score=26.40 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=38.3
Q ss_pred hhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032664 63 IRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHA 115 (136)
Q Consensus 63 ipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~Ha 115 (136)
+...|.++=+.+|+..+ +=.-+++++...+.-|+|..|-+|+|.....|.|-
T Consensus 3 L~~~~Lqkri~~I~~k~-gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R 54 (75)
T 1h3o_A 3 LLQAPLQRRILEIGKKH-GITELHPDVVSYVSHATQQRLQNLVEKISETAQQK 54 (75)
T ss_dssp SCHHHHHHHHHHHHHTT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cccHHHHHHHHHHHHhc-CCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567777788887653 33468899999999999999999999988777763
No 58
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=66.18 E-value=4 Score=27.55 Aligned_cols=66 Identities=9% Similarity=0.172 Sum_probs=38.9
Q ss_pred hhcCchhHHHHHHHhhh-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCccccChhhHHHHHHH
Q 032664 63 IRKLPFQRLVREIAQDF-KTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIH-------AKRVTIMPKDIQLARRI 131 (136)
Q Consensus 63 ipk~pF~RlVreI~~~~-~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~H-------akRvTi~~~Diqla~ri 131 (136)
||+.-..||+. ..| ..++||+.+|+.++++..+-|+..-.-.|+.-.-- .+-..|...|..-+..+
T Consensus 2 ip~~llaRIL~---~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkiaGl 75 (88)
T 3v9r_B 2 LSKEALIKILS---QNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIVGL 75 (88)
T ss_dssp CCSHHHHHHHT---TTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHHHH
T ss_pred CCHHHHHHHHH---HHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHHHH
Confidence 44444445544 223 47899999999999887777776655555221111 11257888888765544
No 59
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=57.73 E-value=5.6 Score=24.79 Aligned_cols=30 Identities=20% Similarity=0.483 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 101 LVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 101 lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
|..+..+|.+.|+...+..|+..|+.-|..
T Consensus 42 i~~l~~eA~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 42 VKGVCTEAGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 555677778888888999999999998865
No 60
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=54.89 E-value=43 Score=22.14 Aligned_cols=65 Identities=18% Similarity=0.236 Sum_probs=50.8
Q ss_pred hhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CccccChhhHHHHHHHh
Q 032664 63 IRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHA-KRVTIMPKDIQLARRIR 132 (136)
Q Consensus 63 ipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~Ha-kRvTi~~~Diqla~ri~ 132 (136)
++|....+|+..+ .+..++.+.+.+|.-.+-.|+-+|-|.|..+.-.- ..--|.|..|+.|.+-.
T Consensus 17 f~k~~vKrl~~~~-----~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl 82 (89)
T 1bh9_B 17 FPKAAIKRLIQSI-----TGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRL 82 (89)
T ss_dssp CCHHHHHHHHHHH-----HSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-----cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 5565556666555 35688999999999999999999999997766654 35589999999997643
No 61
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=48.89 E-value=60 Score=24.71 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=39.9
Q ss_pred ccccccHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 81 TDLRFQSSAVAALQEAAE------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E------~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
.+..|+.++++.+.+.+. -++.++++.+...|...+.-+|+..|+.-+..
T Consensus 219 ~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 219 NPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp CTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 346788999999988887 56778888888888777888899999887654
No 62
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=43.89 E-value=75 Score=25.92 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=42.9
Q ss_pred cccccHHHHHHHHHHH-H---HHHHHHHHHHHHHHhhcCccccChhhHHHHHHHh
Q 032664 82 DLRFQSSAVAALQEAA-E---AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 132 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~-E---~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri~ 132 (136)
...++.+++..+-..+ + -...++++.+..+|.-.++-+|+.+|++-|..+-
T Consensus 383 ~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 383 GINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp TCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 4678999999887776 4 4678888999889988899999999999988764
No 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=43.87 E-value=1e+02 Score=23.28 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=37.5
Q ss_pred ccccccHHHHHHHHHHHH------HHHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032664 81 TDLRFQSSAVAALQEAAE------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E------~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ 129 (136)
....++.+++..+.+.+. .++.++++.+...+...+..+|+.+|++.+.
T Consensus 215 ~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~ 269 (386)
T 2qby_A 215 KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAK 269 (386)
T ss_dssp CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Confidence 356889999999888877 2456677777777776677789999988654
No 64
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=40.55 E-value=80 Score=22.10 Aligned_cols=48 Identities=8% Similarity=0.082 Sum_probs=34.7
Q ss_pred ccccccHHHHHHHHHHHH---HHHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032664 81 TDLRFQSSAVAALQEAAE---AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
Q Consensus 81 ~~~r~~~~Al~aLqea~E---~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ 129 (136)
.+..++.++++.|.+.++ ..+.++++.+...+...++ +|+..|++-+.
T Consensus 190 ~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~-~It~~~v~~~l 240 (242)
T 3bos_A 190 RGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQR-KLTIPFVKEML 240 (242)
T ss_dssp TTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTC-CCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHh
Confidence 356799999999888776 4556666666666655554 69999988765
No 65
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=39.66 E-value=83 Score=21.39 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=31.8
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 82 DLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
+..++.+++..|.+.+.-.+-.+......++..+ -+|+.+|++-+..
T Consensus 178 ~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 178 GVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4568899988887776644444444444555555 4888999987764
No 66
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=36.53 E-value=52 Score=22.70 Aligned_cols=47 Identities=15% Similarity=0.155 Sum_probs=30.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032664 82 DLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ 129 (136)
...++.++++.|.+.++-..-.+...+..++..+.. +|+.+|++-+.
T Consensus 202 ~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~-~i~~~~v~~~~ 248 (250)
T 1njg_A 202 HIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDG-QVSTQAVSAML 248 (250)
T ss_dssp TCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTS-SBCHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCc-eecHHHHHHHh
Confidence 467889999888887764443333333334445443 89999987654
No 67
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=35.36 E-value=35 Score=25.01 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032664 100 YLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
Q Consensus 100 ~lv~lfe~a~~~a~HakRvTi~~~Diqla~ 129 (136)
-|..+.+.|...|...++.+|+.+|++-+.
T Consensus 224 dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 224 DLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 466777778778887788899999988653
No 68
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=34.04 E-value=45 Score=20.73 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=20.7
Q ss_pred HHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 104 LFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 104 lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
+-.+|.+.|+...+..|+..|+.-|..
T Consensus 40 l~~eAa~~ai~~~~~~i~~~df~~Al~ 66 (82)
T 2dzn_B 40 IMQEAGLRAVRKNRYVILQSDLEEAYA 66 (82)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 345666777777888999999988765
No 69
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=32.98 E-value=48 Score=21.06 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 101 LVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 101 lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
|..|..+|.+.|++..+..|+.+|+.-|..
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVD 69 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 445566677788888889999999998875
No 70
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=30.60 E-value=1.8e+02 Score=22.19 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=34.4
Q ss_pred cccccHHHHHHHHHHHH---H---HHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 82 DLRFQSSAVAALQEAAE---A---YLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~E---~---~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
+..|+.++++.+.+.+. - ++.++++.+..+|. +..+|+.+|+..+..
T Consensus 216 ~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~ 268 (384)
T 2qby_B 216 KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIV 268 (384)
T ss_dssp TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHH
Confidence 46788999988888776 2 45667777776666 556788899887653
No 71
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=29.39 E-value=56 Score=20.16 Aligned_cols=29 Identities=17% Similarity=0.411 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 102 VGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 102 v~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
..+..+|.+.|+...+..|+..|+.-|..
T Consensus 41 ~~l~~eA~~~a~~~~~~~i~~~df~~Al~ 69 (83)
T 3aji_B 41 NSICQESGMLAVRENRYIVLAKDFEKAYK 69 (83)
T ss_dssp HHHHHHHHHGGGTSCCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCcCHHHHHHHHH
Confidence 34456677778888889999999988764
No 72
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=28.40 E-value=51 Score=24.18 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 100 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 100 ~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
-|..+.+.|...|...++.+|+.+|+.-|..
T Consensus 220 dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 220 DLANLVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 4667778888888888889999999998775
No 73
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=26.98 E-value=69 Score=20.33 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=40.5
Q ss_pred cccCCCchhhHHHhhhhhhhhhhhhcCchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 032664 40 HRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVT 119 (136)
Q Consensus 40 ~r~~pg~~~l~EIr~~q~st~llipk~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvT 119 (136)
+...|....-.+|=+..-....+-+-..|..|+ . ....||..-|.+| -.+|.+.|+...+..
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA----~---~T~G~SGADL~~l-----------~~eAa~~alr~~~~~ 68 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIA----E---LMPGASGAEVKGV-----------CTEAGMYALRERRVH 68 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHH----H---TCSSCCHHHHHHH-----------HHHHHHHHHHTTCSE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHH----H---HcCCCCHHHHHHH-----------HHHHHHHHHHHcCCC
Confidence 345677777777743222111111233344443 2 1235665555444 445556666667889
Q ss_pred cChhhHHHHHH
Q 032664 120 IMPKDIQLARR 130 (136)
Q Consensus 120 i~~~Diqla~r 130 (136)
|+.+|+.-|..
T Consensus 69 I~~~df~~Al~ 79 (86)
T 2krk_A 69 VTQEDFEMAVA 79 (86)
T ss_dssp ECHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999988874
No 74
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=25.59 E-value=64 Score=24.08 Aligned_cols=30 Identities=30% Similarity=0.317 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhcCccccChhhHHHHH
Q 032664 100 YLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 129 (136)
Q Consensus 100 ~lv~lfe~a~~~a~HakRvTi~~~Diqla~ 129 (136)
-|..+.+.|...|...++.+|+.+|+.-|.
T Consensus 248 dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 248 DLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 456677777777777777889999987653
No 75
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=23.98 E-value=1.1e+02 Score=23.52 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=40.3
Q ss_pred hHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccChhhHHHHHHH
Q 032664 69 QRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 131 (136)
Q Consensus 69 ~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~a~~~a~HakRvTi~~~Diqla~ri 131 (136)
...|++++.+ .+..++.+|+..|-+.++.=+-.+......++.+++.-+|+.+||+-+...
T Consensus 148 ~~~l~~~~~~--~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 148 PRWVAARAKQ--LNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHH--TTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhh
Confidence 3444454432 457899999999988777555555555555666554458999998766543
No 76
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=23.32 E-value=2.4e+02 Score=21.28 Aligned_cols=49 Identities=10% Similarity=0.277 Sum_probs=37.8
Q ss_pred cccccHHHHHHHHHHH---------H---HHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 82 DLRFQSSAVAALQEAA---------E---AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~---------E---~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
+..|+.++++.+.+.+ + .++.++++.+...|...+.-+|+.+|+.-+..
T Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 212 EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3478999999998888 3 34677777777777777778899999887654
No 77
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=22.77 E-value=1.5e+02 Score=23.43 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=18.9
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHH
Q 032664 82 DLRFQSSAVAALQEAAEAYLVGLFED 107 (136)
Q Consensus 82 ~~r~~~~Al~aLqea~E~~lv~lfe~ 107 (136)
.++|...--.+|||.+|++.-.-|=.
T Consensus 113 ~yry~~~~s~~lQEyVEA~sf~~yL~ 138 (290)
T 3qb5_K 113 MHQFHRAITTGLQEYVEAVSFQHFIK 138 (290)
T ss_dssp STTTGGGTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46787666679999999876655543
No 78
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.47 E-value=86 Score=21.23 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 032664 89 AVAALQEAAEAYLVGLFEDTNLCAIHAKRV 118 (136)
Q Consensus 89 Al~aLqea~E~~lv~lfe~a~~~a~HakRv 118 (136)
....+..-.|..-..||+.||.+..-+++.
T Consensus 48 ~~~~ie~ElEeLTasLFeEAN~MVa~ar~e 77 (97)
T 2eqb_B 48 EADKLNKEVEDLTASLFDEANNMVADARKE 77 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777999999999999998887654
No 79
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.17 E-value=79 Score=26.71 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhhcCccccChhhHHHHHH
Q 032664 99 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
Q Consensus 99 ~~lv~lfe~a~~~a~HakRvTi~~~Diqla~r 130 (136)
+-|..|..+|.+.|+..++..|+.+|+.-|..
T Consensus 390 ADI~~l~~eA~~~Air~~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 390 ADIQAMCTEAGLLALRERRMQVTAEDFKQAKE 421 (437)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 34566677788889999999999999998864
No 80
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=21.97 E-value=88 Score=28.91 Aligned_cols=38 Identities=11% Similarity=0.169 Sum_probs=33.5
Q ss_pred CchhHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHH
Q 032664 66 LPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFED 107 (136)
Q Consensus 66 ~pF~RlVreI~~~~~~~~r~~~~Al~aLqea~E~~lv~lfe~ 107 (136)
.-|.--+|+|++++++++.+..+|++-+ |.++..|+-.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 58 (1049)
T 3ksy_A 21 GLLVPALKKVQGQVHPTLESNDDALQYV----EELILQLLNM 58 (1049)
T ss_dssp SSSHHHHHHHHHHHCTTSBCCHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCccHhHHHHH----HHHHHHHHHH
Confidence 4577889999999999999999999998 9888888754
Done!